RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14258
(440 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 131 bits (331), Expect = 3e-36
Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 31/265 (11%)
Query: 75 SFLTFAQ----EAIYFCTHYMEH--CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 128
+ L FAQ E + + M+ + + G+A D +++T P
Sbjct: 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPS 59
Query: 129 LERSLLDGTERFPMVTHKIVYPEA-------------------IYFCTHYMEHCMIAIDL 169
+ R+ L G E ++ + PE I + D
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
L PRGI DP G +++T W P +E S +DGT R + + P G+T D +
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289
+ WVD + +N R+ + +G +Q + +T + NL+ T W+ S+I ++
Sbjct: 180 QLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237
Query: 290 NSDDYETI--ANFSRPFAIHIYHRQ 312
S + +T +R + I I Q
Sbjct: 238 ISKEMDTFHPHKQTRLYGITIALSQ 262
Score = 65.7 bits (159), Expect = 1e-12
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIM--PITDLKRPSVIDYHEKEEYIYYAELTSYV 379
T LL+A+ I+ L +R+ + K + + ++ +Y+ +++
Sbjct: 2 THLLFAQTG--KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS 59
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
I R + G +I + + EG+A+D + ++WTD+ + I VAK+ R +
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Score = 57.2 bits (137), Expect = 8e-10
Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 16/259 (6%)
Query: 185 YMFFTKWGATRPM-LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR 243
++ F + G + LER+ + TE + G+ D K VYW D I R
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 244 INYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFS 301
+ G + TI + + + I + +F T + I +
Sbjct: 63 ASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121
Query: 302 RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVI 361
+ + L + K T DG T + I+ +L P+ +
Sbjct: 122 VNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGL 172
Query: 362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421
+ + + + ++ E G+ V++ G+ + NLY+TD
Sbjct: 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTN 229
Query: 422 TINVAKISDFSIRKVLYKG 440
++ ++ +
Sbjct: 230 SVIAMDLAISKEMDTFHPH 248
Score = 40.6 bits (94), Expect = 2e-04
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 20/213 (9%)
Query: 236 TYLDF-----IDRINYDGTD-RKTIRKGFPVQNLYDIT-----VFENNLFVTSWRNQSII 284
T+L F I+R+ + +KT K F I + ++ T SI
Sbjct: 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT 344
R + + I + AL ++ +
Sbjct: 62 RAS---------LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112
Query: 345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGM 404
R V D Y + IE M G + ++ + G+
Sbjct: 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL 172
Query: 405 AVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
D ++ L W DAG + RKVL
Sbjct: 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 121 bits (304), Expect = 2e-32
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 28/241 (11%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPEAIYFC 156
NL + + S ++++ + M+ + LD + +++ I P+ +
Sbjct: 28 NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85
Query: 157 THYME-------------------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 197
+ N SKPR I +DP G+M++T WG T
Sbjct: 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAK 144
Query: 198 LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG 257
+++ L+G + + +VT I +P G+T+D + +YWVD+ L I I+ +G +RKTI +
Sbjct: 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204
Query: 258 FP-VQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
+ + + + VFE+ +F T N++I N+ D +A N P + ++H QP
Sbjct: 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264
Query: 316 D 316
Sbjct: 265 R 265
Score = 66.1 bits (160), Expect = 8e-13
Identities = 33/263 (12%), Positives = 82/263 (31%), Gaps = 22/263 (8%)
Query: 184 GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR 243
Y+FF R + + LD +E ++ + + + + + +YW D I
Sbjct: 2 AYLFF----TNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICS 56
Query: 244 INYDGTDRKTIRKGFPVQNLYD-----ITVFENNLFVTSWRNQSI-IRVNKFNSDDYETI 297
D + +++ + +N++ T ++ + K
Sbjct: 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 116
Query: 298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKR 357
N S+P AI + T + + + +++
Sbjct: 117 ENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENIQW 165
Query: 358 PSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTD 417
P+ I +Y+ + + I + G ++ +++ ++ + ++WTD
Sbjct: 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225
Query: 418 AGIGTINVAKISDFSIRKVLYKG 440
I A S +L +
Sbjct: 226 IINEAIFSANRLTGSDVNLLAEN 248
Score = 49.1 bits (116), Expect = 3e-07
Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 19/243 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPYGVTVD 225
NL + + S ++++ + M+ + LD + +++ I P G+ VD
Sbjct: 28 NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85
Query: 226 FPTKHVYWVDTYLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSII 284
+ ++YW D+ L + + G + R+ + ++ T W + I
Sbjct: 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 145
Query: 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT 344
+ N D ++ + + I L + K I + +G
Sbjct: 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSG-------RLYWVDSKLHSISSIDV--NGG 196
Query: 345 TEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG 403
+ I+ L P + E + +++ ++ + I ++ + + E
Sbjct: 197 NRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPED 254
Query: 404 MAV 406
M +
Sbjct: 255 MVL 257
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 38.6 bits (90), Expect = 4e-05
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 11 CVDADECLI-DGSCDQTCTNTHLSYTYT-DEGFSFQG 45
VD DEC D C NT SY G+ G
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 37.8 bits (88), Expect = 6e-05
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 13 DADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG 45
D DEC G C C N ++ + G
Sbjct: 1 DIDECENGGFCSGVCHNLPGTFECICGPDSALAG 34
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 36.3 bits (84), Expect = 3e-04
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 15 DECLIDGSCDQTCTNTHLSYT 35
DEC +C Q C N Y
Sbjct: 2 DECQDPDTCSQLCVNLEGGYK 22
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.4 bits (76), Expect = 0.003
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 10/44 (22%)
Query: 12 VDADECLI---------DGSCDQTCTNTHLSYTYT-DEGFSFQG 45
VD DEC C C N Y + G+ Q
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE 45
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 32.8 bits (75), Expect = 0.004
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 15 DECLID-GSCDQTCTNTHLSYT 35
+ECL + G C C + + Y
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYE 24
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human
(Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 31.4 bits (71), Expect = 0.014
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 15 DEC--LIDGSCDQTCTNTHLSYT 35
+EC +D C C N Y
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYF 23
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 34.8 bits (78), Expect = 0.015
Identities = 30/250 (12%), Positives = 66/250 (26%), Gaps = 18/250 (7%)
Query: 174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYW 233
P G+A+D +G ++ T G + + T + + + P G+ VD VY
Sbjct: 16 PSGVAVDS-AGNVYVTSEG-MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYV 72
Query: 234 VDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD 293
D + G + N+ + +
Sbjct: 73 TDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 132
Query: 294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT 353
+ P + + + + K + + ++
Sbjct: 133 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNR--------------VVKLEAESNNQVVLPF 178
Query: 354 DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNL 413
++ +Y E + + + V+ TG+ +AVD +
Sbjct: 179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTV 237
Query: 414 YWTDAGIGTI 423
Y D G +
Sbjct: 238 YVADRGNDRV 247
Score = 34.1 bits (76), Expect = 0.023
Identities = 12/197 (6%), Positives = 48/197 (24%), Gaps = 12/197 (6%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATR---PMLERSLLDGTERFPMVTHKIVYPEAIYFCTH 158
L +P+G+A+D + + V + +
Sbjct: 56 LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVAD 115
Query: 159 YMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVY 218
+ ++ + + + + + + + + ++ V
Sbjct: 116 RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV 175
Query: 219 PYGVTVDFPTKHVYWVDTYLDF-------IDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
+ P + + ++ T + + + V +
Sbjct: 176 LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT-GLNTPLAVAVDSD 234
Query: 272 -NLFVTSWRNQSIIRVN 287
++V N ++++
Sbjct: 235 RTVYVADRGNDRVVKLT 251
Score = 32.9 bits (73), Expect = 0.054
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 4/107 (3%)
Query: 142 MVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS 201
V + + ++ +++ P GIA+D + +
Sbjct: 152 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ---VVKL 208
Query: 202 LLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG 248
L T + + P V VD + VY D D + ++
Sbjct: 209 LAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLE 254
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 31.4 bits (71), Expect = 0.015
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 13 DADECLID-GSCDQTCTNTHLSYT 35
D +ECL C NT SY
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYI 25
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 30.9 bits (70), Expect = 0.020
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 13 DADECLID--GSCDQTCTNTHLSYTYT-DEGFSFQG 45
D DEC C NT S+ G+
Sbjct: 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 37
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 29.8 bits (67), Expect = 0.046
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 15 DECLI----DGSCDQTCTNTHLSYT 35
DEC + +CD C N +
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGGFY 26
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 29.5 bits (66), Expect = 0.063
Identities = 8/25 (32%), Positives = 8/25 (32%), Gaps = 4/25 (16%)
Query: 15 DECLID----GSCDQTCTNTHLSYT 35
DEC CD C N Y
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLGGYY 26
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 28.6 bits (64), Expect = 0.12
Identities = 11/36 (30%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 13 DADECLID--GSCDQTCTNTHLSYTYT-DEGFSFQG 45
D DEC D C NT SY G
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 36
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 30.8 bits (68), Expect = 0.29
Identities = 20/212 (9%), Positives = 47/212 (22%), Gaps = 9/212 (4%)
Query: 221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-------GFPVQNLYDITVFENNL 273
G+ D ++ +D + I +IN + + K + + V
Sbjct: 44 GLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 102
Query: 274 FVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAI 333
F ++ + D E ++ + + G +
Sbjct: 103 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 162
Query: 334 IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVV 393
+ + E + + + G +
Sbjct: 163 SPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 221
Query: 394 IDTGIYNVEGMAVDWMANNLYWTDAGIGTINV 425
+ +NLY G G + V
Sbjct: 222 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV 253
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos
taurus) [TaxId: 9913]}
Length = 51
Score = 27.9 bits (62), Expect = 0.35
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 17 CLID-GSCDQTCTNTHLSYT 35
C +D G CDQ C
Sbjct: 1 CSLDNGGCDQFCREERSEVR 20
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 27.5 bits (61), Expect = 0.43
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 17 CLID-GSCDQTCTNTHLSYT 35
C +D G CDQ C S
Sbjct: 3 CSLDNGDCDQFCHEEQNSVV 22
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 27.4 bits (61), Expect = 0.43
Identities = 5/20 (25%), Positives = 6/20 (30%), Gaps = 1/20 (5%)
Query: 17 CLID-GSCDQTCTNTHLSYT 35
C +D G C C
Sbjct: 2 CSLDNGGCTHYCLEEVGWRR 21
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 27.1 bits (60), Expect = 0.45
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 13 DADECLI--DGSCDQTCTNTHLSYTYT-DEGF 41
D DEC I D C NT + DEG+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGY 33
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 107
Score = 28.6 bits (64), Expect = 0.51
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 232 YWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQS 282
Y+ Y F D I Y+G + K V + + T N + + S
Sbjct: 28 YYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDS 78
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 29.3 bits (65), Expect = 0.86
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 14/133 (10%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
L I + P L+ + + VT+ +
Sbjct: 149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY------------YSPN 196
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
+ + GI + P Y++ + A + + + T V
Sbjct: 197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN 255
Query: 222 VTVDFPTKHVYWV 234
++VD P WV
Sbjct: 256 ISVD-PVTGDLWV 267
Score = 27.4 bits (60), Expect = 3.2
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 12/118 (10%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD------GTERFPMVTHKIV-----YP 219
L I + P L+ + + ++V +
Sbjct: 149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFA 208
Query: 220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYD-ITVFENNLFVT 276
G+ + K+VY + I T + L D I+V +
Sbjct: 209 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW 266
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum)
[TaxId: 3888]}
Length = 46
Score = 26.1 bits (57), Expect = 1.5
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 10/28 (35%)
Query: 2 TFRGPNKTQCVDADECLIDGSCDQTCTN 29
T+RG C + SCD C N
Sbjct: 9 TYRGV----------CFTNASCDDHCKN 26
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 27.7 bits (60), Expect = 3.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 269 FENNLFVTSWRNQSIIRVNKFNSD 292
+EN L V S + I R+ K +
Sbjct: 367 WENTLLVPSLKRGVIFRI-KLDPT 389
>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like
protein 6, DPP6, C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 258
Score = 27.0 bits (58), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 34 YTYTDE--GFSFQGVKTHLYETIEAFWEECF 62
Y DE F+ +K HLY +I F+ ECF
Sbjct: 226 QIYPDESHYFTSSSLKQHLYRSIINFFVECF 256
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 26.0 bits (56), Expect = 5.7
Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 5 GPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQG--VKTHLYETIEAFWEECF 62
GP TQCV C Q C + + + H + E CF
Sbjct: 13 GPGPTQCV---NCS-HFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCF 68
Query: 63 GP 64
G
Sbjct: 69 GS 70
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase
Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 25.5 bits (55), Expect = 5.9
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 5 GPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEG 40
GP QC+ G C C +
Sbjct: 13 GPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHE 48
>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 258
Score = 26.3 bits (56), Expect = 7.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 34 YTYTDE--GFSFQGVKTHLYETIEAFWEECFG 63
YTDE G + H+Y + F ++CF
Sbjct: 225 MWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 256
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus
opacus [TaxId: 37919]}
Length = 256
Score = 26.4 bits (58), Expect = 7.4
Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 68 EEWDEGLSFLTF---AQEAIYFCTHYMEHCMIAID 99
E++ + ++ A E + + E + ++
Sbjct: 28 PEYETIMQYMISVGEAGEWPLWLDAFFETTVDSVS 62
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 160
Score = 25.4 bits (55), Expect = 9.7
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 229 KHVYWVDTYLDFIDRI---NY 246
HV +++T + DR+ +
Sbjct: 129 GHVDFLETQISLYDRLGPQGF 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.441
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,821,917
Number of extensions: 91410
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 46
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)