RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14259
(79 letters)
>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal
region. This family is an alignment of the region to
the N-terminal side of the active site. The Prosite
motif does not correspond to this Pfam entry.
Length = 348
Score = 55.0 bits (133), Expect = 1e-10
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 22 PYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSEVVSNGVPDWLYQ 76
+Q+ W+P + LA+V + ++Y AT ++ ++++ GS + NG+ DW+Y+
Sbjct: 43 GKIQYAKWSPDGHKLAYVRDNNLYVRELATGKET-QITSDGSNGIFNGLADWVYE 96
>gnl|CDD|237887 PRK15046, PRK15046, 2-aminoethylphosphonate ABC transporter
substrate-binding protein; Provisional.
Length = 349
Score = 28.5 bits (64), Expect = 0.23
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 28 SWAP-VDNALAFVYNRDVYYSPSATLQDI 55
++AP V+N L+F+YN V + AT D+
Sbjct: 127 TYAPFVNNYLSFIYNPKVLKTAPATWADL 155
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism].
Length = 313
Score = 26.6 bits (59), Expect = 1.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 36 LAFVYNRDVYYSPSATLQDIYRLSNTGSEVV 66
L +NRD + + L+ G E+V
Sbjct: 125 LGLTWNRDNLFGDGCYERTGGGLTPFGKELV 155
>gnl|CDD|132271 TIGR03227, PhnS, 2-aminoethylphosphonate ABC transporter,
periplasmic 2-aminoethylphosphonate binding protein.
This ABC transporter periplasmic substrate binding
protein component is found in a region of the salmonella
typhimurium LT2 genome responsible for the catabolism of
2-aminoethylphosphonate via the phnWX pathway
(GenProp0238). The protein contains a match to pfam01547
for the "Bacterial extracellular solute-binding protein"
domain.
Length = 367
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 28 SWAP-VDNALAFVYNRDVYYSPSATLQDI 55
WAP V N +F N + S A+ D+
Sbjct: 132 LWAPFVKNYFSFAINPKLLKSAPASFADL 160
>gnl|CDD|234324 TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This
protein is designated Asp2 because, along with SecY2,
SecA2, and other proteins it is part of the accessory
secretory protein system. The system is involved in the
export of serine-rich glycoproteins important for
virulence in a number of Gram-positive species,
including Streptococcus gordonii and Staphylococcus
aureus. This protein family is assigned to transport
rather than glycosylation function, but the specific
molecular role is unknown [Protein fate, Protein and
peptide secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 511
Score = 26.5 bits (59), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 35 ALAFVYNRDVYYSPSATLQDIYRLSNTGSEVVSNGVP 71
A+A++ N D Y P+A + LS G++V+S G+P
Sbjct: 448 AIAYMKNDD--YDPTAFQDLLPYLSKQGAQVMSKGIP 482
>gnl|CDD|223891 COG0821, gcpE, 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate
synthase [Lipid metabolism].
Length = 361
Score = 26.0 bits (58), Expect = 1.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 50 ATLQDIYRLSNTGSEVVSNGVPD 72
AT+ I L G ++V VPD
Sbjct: 37 ATVAQIKALERAGCDIVRVTVPD 59
>gnl|CDD|233052 TIGR00612, ispG_gcpE, 1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase. This protein of previously
unknown biochemical function has now been identified as
an enzyme of the non-mevalonate pathway of IPP
biosynthesis. Chlamydial members of the family have a
long insert. The family is largely restricted to
Bacteria, where it is widely but not universally
distributed. No homology can be detected between the
GcpE family and other proteins [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 346
Score = 25.5 bits (56), Expect = 2.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 50 ATLQDIYRLSNTGSEVVSNGVPD 72
AT+ I RL G E+V VPD
Sbjct: 35 ATVAQIRRLEEAGCEIVRVTVPD 57
>gnl|CDD|234737 PRK00366, ispG, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Reviewed.
Length = 360
Score = 25.0 bits (56), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 50 ATLQDIYRLSNTGSEVVSNGVPD 72
AT+ I RL+ G E+V VPD
Sbjct: 43 ATVAQIKRLARAGCEIVRVAVPD 65
>gnl|CDD|218143 pfam04551, GcpE, GcpE protein. In a variety of organisms,
including plants and several eubacteria, isoprenoids
are synthesised by the mevalonate-independent
2-C-methyl-D-erythritol 4-phosphate (MEP) pathway.
Although different enzymes of this pathway have been
described, the terminal biosynthetic steps of the MEP
pathway have not been fully elucidated. GcpE gene of
Escherichia coli is involved in this pathway.
Length = 345
Score = 25.2 bits (56), Expect = 4.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 42 RDVYYSPSATLQDIYRLSNTGSEVVSNGVPD 72
RDV AT+ I RL G ++V VPD
Sbjct: 28 RDVE----ATVAQIKRLEEAGCDIVRVAVPD 54
>gnl|CDD|225555 COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase
[Carbohydrate transport and metabolism].
Length = 229
Score = 24.9 bits (55), Expect = 5.4
Identities = 6/26 (23%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 41 NRDVYYSPSATLQDIYRLSNTGSEVV 66
+ V +P TL+++ L+ G++++
Sbjct: 79 DSPVRITP--TLKEVDALAEAGADII 102
>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target
protein. Members of this protein family are restricted
to the Proteobacteria. Each contains a C-terminal
sortase-recognition motif, transmembrane domain, and
basic residues cluster at the the C-terminus, and is
encoded adjacent to a sortase gene. This protein is
frequently the only sortase target in its genome, which
is as unusual its occurrence in Gram-negative rather
than Gram-positive genomes. Many bacteria with this
system are marine. In addition to the LPXTG signal,
members carry a vault protein inter-alpha-trypsin
inhibitor domain (pfam08487) and a von Willebrand factor
type A domain (pfam00092).
Length = 596
Score = 24.7 bits (54), Expect = 7.1
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 46 YSPSATLQDIYRLSNTGSEVVSNGVPD 72
Y P +T+ + ++N+G + + VPD
Sbjct: 133 YIPGSTVNTVTDVNNSGWAIPTTQVPD 159
>gnl|CDD|185198 PRK15298, PRK15298, fimbrial outer membrane usher protein StiC;
Provisional.
Length = 848
Score = 24.3 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 28 SWAPVDNALAFVYNRDVY 45
SW PV L++ YN++ Y
Sbjct: 536 SWGPVSYTLSYSYNKNTY 553
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,026,366
Number of extensions: 303885
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 14
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)