RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14259
(79 letters)
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 56.8 bits (137), Expect = 2e-11
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 6 LPIRAEKQQNINDHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSE- 64
+P + + + LQ+ W P L F++ ++YY Q I R+ +TG E
Sbjct: 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI-RVVSTGKEG 156
Query: 65 VVSNGVPDWLYQ 76
V+ NG+ DWLY+
Sbjct: 157 VIYNGLSDWLYE 168
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 53.9 bits (130), Expect = 2e-10
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 19 HEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSEVVSNGVPDWLYQ 76
H + +P ++F+ R+++ A+ + + +L+ GS + NG+ +++
Sbjct: 149 HGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQM-QLTADGSTTIGNGIAEFVAD 205
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 53.7 bits (129), Expect = 2e-10
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 18 DHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSE-VVSNGVPDWLYQ 76
+ +Q++ W+PV + LA+VY ++Y ++++ G E + NG+PDW+Y+
Sbjct: 106 NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPG-DPPFQITFNGRENKIFNGIPDWVYE 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 51.0 bits (122), Expect = 2e-09
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 18 DHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSE-VVSNGVPDWLYQ 76
+ Q ++W+PV + LA+V+N D+Y L R++ TG E ++ NG+ DW+Y+
Sbjct: 108 ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYE 166
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 39.7 bits (93), Expect = 2e-05
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 8 IRAEKQQNINDHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQD----IYRLSNTGS 63
+ A K + D + ++PV + +A+V N ++Y + L + ++ G+
Sbjct: 108 MLARKVTYLFDTNEE-TASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGT 166
Query: 64 EVVSNGVPDWLYQ 76
E + G ++Q
Sbjct: 167 ETLVYG--QAVHQ 177
>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;
oxidoreductase, isoprenoid biosynthesis, non-mevalonate
PATH; 2.50A {Thermus thermophilus}
Length = 406
Score = 27.2 bits (61), Expect = 0.40
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 42 RDVYYSPSATLQDIYRLSNTGSEVVSNGVPD 72
RDV AT + L GSE+V V D
Sbjct: 35 RDV----EATTAQVLELHRAGSEIVRLTVND 61
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
protein, non-mevalonate pathway, terpene biosynt
isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Length = 366
Score = 26.4 bits (59), Expect = 0.99
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 42 RDVYYSPSATLQDIYRLSNTGSEVVSNGVPD 72
DV ATL I RL G E+V VP
Sbjct: 43 HDV----EATLNQIKRLYEAGCEIVRVAVPH 69
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 25.5 bits (55), Expect = 2.3
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 39 VYNRDVYYSPSATLQDIYRLSNTGS--EVVSNGVP-------DWLY 75
VY ++Y + + N G+ + ++ G ++Y
Sbjct: 232 VYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCNINVTSQYVY 277
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 24.8 bits (53), Expect = 3.5
Identities = 6/61 (9%), Positives = 19/61 (31%)
Query: 6 LPIRAEKQQNINDHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSEV 65
+ + K I + + + +A+ + + +Q I+ G ++
Sbjct: 405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464
Query: 66 V 66
Sbjct: 465 F 465
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 24.6 bits (54), Expect = 4.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 35 ALAFVYNRDVYYSPSATLQDIYRLS 59
AL+ +YN+D+ +P T ++I L
Sbjct: 112 ALSLIYNKDLLPNPPKTWEEIPALD 136
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 24.4 bits (52), Expect = 5.0
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 10 AEKQQNINDHEAPYLQHISWAPVDNALAFVYN 41
A++ +N Y + +P+D+ +A + N
Sbjct: 74 AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN 105
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 23.5 bits (51), Expect = 8.6
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 28 SWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSEVVSNGVPDW 73
+W+P L +Y A +TG + N
Sbjct: 48 NWSPDGKYLLLNSEGLLYRLSLAGD-PSPEKVDTGFATICNNDHGI 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,190,973
Number of extensions: 54162
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 15
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)