RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14259
         (79 letters)



>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein
           6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 465

 Score = 33.8 bits (76), Expect = 0.001
 Identities = 19/71 (26%), Positives = 32/71 (45%)

Query: 6   LPIRAEKQQNINDHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNTGSEV 65
           +P    +  +  +     LQ+  W P    L F++  ++YY      Q I  +S     V
Sbjct: 98  IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGV 157

Query: 66  VSNGVPDWLYQ 76
           + NG+ DWLY+
Sbjct: 158 IYNGLSDWLYE 168


>d1kaca_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
           adenovirus type 12 [TaxId: 28282]}
          Length = 185

 Score = 23.6 bits (51), Expect = 3.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 25  QHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNT 61
           Q +S   V N L F+ N   Y  P+A+      +S T
Sbjct: 94  QSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLT 130


>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 22.6 bits (47), Expect = 7.1
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 1   MIESRLPIRAEKQQNINDHEAPYLQHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSN 60
           +      I A  +  +++              D     +    VY   +A L + YR  +
Sbjct: 100 LERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYR--D 157

Query: 61  TGSEVVSNGVPDWLYQ 76
               V + G  D ++ 
Sbjct: 158 QLKTVDAVGTMDEVFA 173


>d1qhva_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
           adenovirus type 2 [TaxId: 10515]}
          Length = 195

 Score = 22.5 bits (48), Expect = 7.8
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 25  QHISWAPVDNALAFVYNRDVYYSPSATLQDIYRLSNT 61
              +  P  NA+ F+ N   Y    +       +S  
Sbjct: 97  NSTNANPYTNAVGFMPNLLAYPKTQSQTAKNNIVSQV 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,559
Number of extensions: 10226
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)