BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1426
         (64 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
 pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
          Length = 371

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 1  MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIP-------NPGGYPVLML-HGLTVSSDC 52
          M    MI +W YP+EE++++TEDGYIL V RIP       N G  PV+ L HGL  S+  
Sbjct: 6  MNISQMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATN 65

Query: 53 WFLRTPKEDLG 63
          W    P   L 
Sbjct: 66 WISNLPNNSLA 76


>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With
          A Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With
          A Phosphonate Inhibitor
          Length = 377

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 1  MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIP-------NPGGYPVLML-HGLTVSSDC 52
          M    MI +W YP+EE++++TEDGYIL + RIP       N G  PV  L HGL  S+  
Sbjct: 14 MNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATN 73

Query: 53 WFLRTPKEDLG 63
          W    P   L 
Sbjct: 74 WISNLPNNSLA 84


>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
          Citri
 pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
          Citri
          Length = 313

 Score = 27.3 bits (59), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45
          P ++  +  +D + L   +  NP G PV+MLHG
Sbjct: 10 PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHG 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.144    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,267,345
Number of Sequences: 62578
Number of extensions: 79204
Number of successful extensions: 167
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 14,973,337
effective HSP length: 35
effective length of query: 29
effective length of database: 12,783,107
effective search space: 370710103
effective search space used: 370710103
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)