Query psy1426
Match_columns 64
No_of_seqs 117 out of 828
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 23:27:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04083 Abhydro_lipase: Parti 100.0 2.1E-31 4.6E-36 150.5 6.0 55 3-57 1-63 (63)
2 KOG2624|consensus 99.9 2.8E-27 6.1E-32 170.4 5.8 64 1-64 35-100 (403)
3 PLN02872 triacylglycerol lipas 99.8 5.1E-21 1.1E-25 136.8 6.2 62 3-64 33-101 (395)
4 PHA02857 monoglyceride lipase; 95.8 0.015 3.3E-07 38.2 3.9 37 19-55 5-43 (276)
5 PLN02511 hydrolase 95.8 0.025 5.4E-07 40.2 5.2 44 11-54 68-118 (388)
6 PLN02385 hydrolase; alpha/beta 95.5 0.037 8E-07 38.2 4.9 44 10-53 57-103 (349)
7 PRK10749 lysophospholipase L2; 95.2 0.033 7.1E-07 38.3 4.0 41 13-53 29-70 (330)
8 PRK03204 haloalkane dehalogena 94.8 0.047 1E-06 36.7 3.7 43 9-54 9-51 (286)
9 PRK05077 frsA fermentation/res 94.8 0.11 2.5E-06 37.4 5.9 50 4-53 158-211 (414)
10 PRK05855 short chain dehydroge 94.7 0.054 1.2E-06 38.8 4.0 39 17-55 5-43 (582)
11 PRK10985 putative hydrolase; P 94.6 0.084 1.8E-06 36.3 4.8 42 11-52 28-73 (324)
12 TIGR02240 PHA_depoly_arom poly 94.5 0.081 1.7E-06 34.9 4.3 35 20-54 7-42 (276)
13 PLN02298 hydrolase, alpha/beta 94.5 0.13 2.8E-06 34.9 5.4 47 4-50 22-72 (330)
14 PLN02824 hydrolase, alpha/beta 94.3 0.053 1.2E-06 36.0 3.2 34 21-55 14-47 (294)
15 PRK03592 haloalkane dehalogena 93.9 0.083 1.8E-06 35.1 3.4 33 21-55 13-45 (295)
16 PLN03084 alpha/beta hydrolase 93.8 0.12 2.5E-06 37.2 4.2 44 11-54 101-144 (383)
17 TIGR03056 bchO_mg_che_rel puta 93.7 0.078 1.7E-06 34.0 3.0 38 17-54 8-45 (278)
18 PLN02578 hydrolase 93.3 0.1 2.2E-06 36.3 3.1 43 11-55 62-104 (354)
19 TIGR03343 biphenyl_bphD 2-hydr 93.3 0.17 3.6E-06 33.0 4.0 39 16-54 8-47 (282)
20 TIGR01250 pro_imino_pep_2 prol 93.1 0.16 3.4E-06 32.2 3.6 35 20-54 7-42 (288)
21 PRK06489 hypothetical protein; 93.0 0.16 3.4E-06 35.3 3.7 17 38-54 70-86 (360)
22 TIGR01249 pro_imino_pep_1 prol 92.7 0.24 5.2E-06 33.5 4.2 38 15-52 5-42 (306)
23 PLN02211 methyl indole-3-aceta 92.5 0.087 1.9E-06 35.5 1.9 26 29-54 9-35 (273)
24 KOG1454|consensus 92.0 0.39 8.4E-06 33.9 4.7 45 16-60 27-81 (326)
25 PRK11126 2-succinyl-6-hydroxy- 91.5 0.097 2.1E-06 33.4 1.2 19 38-56 2-21 (242)
26 TIGR03101 hydr2_PEP hydrolase, 91.4 0.41 8.8E-06 33.0 4.2 35 16-50 2-38 (266)
27 PRK00870 haloalkane dehalogena 91.4 0.46 1E-05 31.8 4.4 44 11-54 16-63 (302)
28 TIGR03611 RutD pyrimidine util 90.6 0.22 4.8E-06 31.1 2.1 19 37-55 12-31 (257)
29 COG0429 Predicted hydrolase of 90.3 0.72 1.6E-05 33.6 4.8 41 12-52 47-90 (345)
30 PRK10349 carboxylesterase BioH 90.0 0.17 3.7E-06 32.8 1.3 21 35-55 10-31 (256)
31 PF12146 Hydrolase_4: Putative 89.8 0.34 7.3E-06 27.6 2.3 30 24-53 1-32 (79)
32 TIGR01738 bioH putative pimelo 89.3 0.24 5.3E-06 30.4 1.6 17 39-55 6-22 (245)
33 KOG4391|consensus 88.9 1 2.2E-05 31.9 4.5 48 8-55 48-96 (300)
34 PF12715 Abhydrolase_7: Abhydr 88.8 0.6 1.3E-05 34.5 3.5 43 8-50 82-128 (390)
35 PRK10673 acyl-CoA esterase; Pr 87.6 0.37 8E-06 30.8 1.6 17 38-54 17-33 (255)
36 PRK10162 acetyl esterase; Prov 87.1 1.6 3.5E-05 30.1 4.7 40 13-53 56-100 (318)
37 PRK11071 esterase YqiA; Provis 87.1 0.35 7.6E-06 31.2 1.3 16 39-54 3-18 (190)
38 TIGR02427 protocat_pcaD 3-oxoa 86.7 0.62 1.3E-05 28.6 2.2 18 37-54 12-30 (251)
39 KOG4178|consensus 86.4 1 2.3E-05 32.5 3.5 42 15-58 22-65 (322)
40 TIGR03695 menH_SHCHC 2-succiny 86.3 0.4 8.7E-06 29.3 1.2 17 39-55 3-19 (251)
41 PF06500 DUF1100: Alpha/beta h 86.1 2.8 6.1E-05 31.1 5.6 49 4-52 155-205 (411)
42 PF02230 Abhydrolase_2: Phosph 86.0 0.38 8.1E-06 31.1 1.0 22 34-55 10-32 (216)
43 cd04927 ACT_ACR-like_2 Second 85.8 3.5 7.7E-05 23.0 4.9 34 3-36 17-51 (76)
44 PRK11460 putative hydrolase; P 85.4 0.58 1.3E-05 30.9 1.7 21 35-55 13-34 (232)
45 TIGR01607 PST-A Plasmodium sub 85.3 1.1 2.4E-05 31.1 3.1 33 19-51 2-35 (332)
46 PRK14875 acetoin dehydrogenase 85.2 1.1 2.5E-05 30.3 3.1 19 37-55 131-149 (371)
47 PRK13604 luxD acyl transferase 85.2 1.7 3.7E-05 30.9 4.0 41 11-51 6-51 (307)
48 PLN02679 hydrolase, alpha/beta 84.9 0.83 1.8E-05 31.9 2.4 18 38-55 89-106 (360)
49 cd04900 ACT_UUR-like_1 ACT dom 84.5 4.4 9.5E-05 22.1 4.8 33 3-35 18-51 (73)
50 PRK00175 metX homoserine O-ace 84.3 1 2.2E-05 31.7 2.6 35 19-53 22-64 (379)
51 PLN02894 hydrolase, alpha/beta 83.5 4.4 9.5E-05 29.0 5.6 24 32-55 99-123 (402)
52 PF04270 Strep_his_triad: Stre 83.2 0.2 4.2E-06 27.4 -1.1 33 20-55 2-34 (53)
53 PLN02980 2-oxoglutarate decarb 83.2 3.4 7.3E-05 35.1 5.5 46 10-55 1340-1389(1655)
54 cd04928 ACT_TyrKc Uncharacteri 83.2 4.4 9.4E-05 22.8 4.4 33 3-35 18-51 (68)
55 TIGR01836 PHA_synth_III_C poly 83.0 1.6 3.5E-05 30.2 3.2 46 15-62 38-86 (350)
56 cd04926 ACT_ACR_4 C-terminal 82.9 5.9 0.00013 21.7 5.0 33 3-35 18-50 (72)
57 PLN02652 hydrolase; alpha/beta 82.7 2.7 5.8E-05 30.3 4.3 41 14-54 110-153 (395)
58 KOG2382|consensus 82.5 1.2 2.7E-05 32.0 2.4 20 37-56 51-71 (315)
59 PRK10115 protease 2; Provision 82.4 1.7 3.6E-05 33.6 3.3 43 10-52 412-460 (686)
60 PLN03087 BODYGUARD 1 domain co 82.3 2 4.3E-05 32.1 3.6 16 39-54 203-218 (481)
61 PRK04057 30S ribosomal protein 81.1 2.9 6.4E-05 28.2 3.8 30 4-33 86-116 (203)
62 PRK10566 esterase; Provisional 81.0 2.2 4.7E-05 27.4 3.0 26 29-54 15-44 (249)
63 TIGR03502 lipase_Pla1_cef extr 80.7 1 2.3E-05 35.8 1.7 38 18-55 421-467 (792)
64 PF01674 Lipase_2: Lipase (cla 80.1 1.2 2.6E-05 30.1 1.6 19 37-55 1-20 (219)
65 PF12697 Abhydrolase_6: Alpha/ 80.0 1.3 2.8E-05 26.6 1.7 16 40-55 1-16 (228)
66 COG2267 PldB Lysophospholipase 80.0 2.4 5.1E-05 29.4 3.1 41 13-53 8-50 (298)
67 KOG4409|consensus 79.3 2.7 5.9E-05 30.9 3.3 54 6-59 57-112 (365)
68 cd04925 ACT_ACR_2 ACT domain-c 78.9 7.9 0.00017 21.3 4.6 32 3-34 17-48 (74)
69 KOG1838|consensus 76.4 7.3 0.00016 29.0 4.9 40 12-51 91-139 (409)
70 PLN00021 chlorophyllase 75.7 5.8 0.00013 27.8 4.1 43 11-53 21-68 (313)
71 PF01015 Ribosomal_S3Ae: Ribos 75.4 3.8 8.3E-05 27.4 3.0 28 5-32 93-121 (194)
72 PF03959 FSH1: Serine hydrolas 74.7 1.2 2.6E-05 29.1 0.4 17 37-53 3-20 (212)
73 PF05057 DUF676: Putative seri 74.6 1.5 3.1E-05 29.0 0.8 15 40-54 7-21 (217)
74 TIGR02821 fghA_ester_D S-formy 73.9 6.1 0.00013 26.5 3.7 19 37-55 41-60 (275)
75 COG1890 RPS1A Ribosomal protei 72.3 3.6 7.9E-05 28.2 2.3 28 5-32 95-123 (214)
76 PRK08775 homoserine O-acetyltr 72.1 7.1 0.00015 26.8 3.8 28 23-51 44-71 (343)
77 cd04899 ACT_ACR-UUR-like_2 C-t 72.1 12 0.00027 19.5 4.5 33 3-35 17-49 (70)
78 PF07819 PGAP1: PGAP1-like pro 72.1 2.2 4.8E-05 28.5 1.2 17 37-53 4-20 (225)
79 KOG2551|consensus 71.4 2 4.3E-05 29.8 0.9 17 37-53 4-21 (230)
80 PRK07868 acyl-CoA synthetase; 69.9 6.3 0.00014 31.5 3.5 23 38-61 68-90 (994)
81 COG0400 Predicted esterase [Ge 68.8 4 8.6E-05 27.3 1.9 20 36-55 16-36 (207)
82 PLN02965 Probable pheophorbida 68.6 3.1 6.7E-05 27.1 1.3 17 39-55 5-21 (255)
83 cd00707 Pancreat_lipase_like P 66.6 3.7 8E-05 28.0 1.5 18 37-54 35-54 (275)
84 PLN02442 S-formylglutathione h 66.6 11 0.00023 25.7 3.7 21 36-56 45-66 (283)
85 KOG1455|consensus 66.6 14 0.00031 26.7 4.4 43 8-50 21-67 (313)
86 PF11197 DUF2835: Protein of u 66.2 12 0.00026 21.2 3.3 44 1-47 7-50 (68)
87 TIGR00976 /NonD putative hydro 65.6 9.4 0.0002 28.4 3.5 31 19-50 1-35 (550)
88 PRK07581 hypothetical protein; 65.4 12 0.00025 25.5 3.7 17 37-53 40-57 (339)
89 PF02089 Palm_thioest: Palmito 63.9 4.7 0.0001 28.5 1.6 14 37-50 5-18 (279)
90 TIGR01392 homoserO_Ac_trn homo 63.7 9.8 0.00021 26.2 3.1 13 39-51 33-45 (351)
91 PF06441 EHN: Epoxide hydrolas 62.0 16 0.00035 22.2 3.6 35 17-51 70-106 (112)
92 PF10503 Esterase_phd: Esteras 62.0 7 0.00015 26.4 2.1 19 37-55 15-34 (220)
93 PF00246 Peptidase_M14: Zinc c 62.0 43 0.00092 22.5 5.9 40 4-43 6-52 (279)
94 TIGR01840 esterase_phb esteras 61.8 4.5 9.8E-05 25.9 1.1 19 36-54 11-30 (212)
95 COG1506 DAP2 Dipeptidyl aminop 59.8 21 0.00046 27.2 4.5 46 7-52 358-409 (620)
96 cd04895 ACT_ACR_1 ACT domain-c 59.4 30 0.00066 19.5 4.7 33 3-35 18-50 (72)
97 PF12695 Abhydrolase_5: Alpha/ 58.8 5.3 0.00011 23.1 1.0 16 39-54 1-16 (145)
98 COG1647 Esterase/lipase [Gener 58.1 6.4 0.00014 27.5 1.4 16 37-52 15-30 (243)
99 COG0596 MhpC Predicted hydrola 57.6 6.2 0.00013 23.4 1.2 17 39-55 23-39 (282)
100 smart00596 PRE_C2HC PRE_C2HC d 57.2 33 0.00071 19.6 4.0 40 4-43 5-49 (69)
101 PF01206 TusA: Sulfurtransfera 55.9 23 0.0005 18.9 3.2 27 2-29 42-68 (70)
102 cd03421 SirA_like_N SirA_like_ 55.9 17 0.00037 19.5 2.7 25 2-28 40-64 (67)
103 PF12048 DUF3530: Protein of u 53.9 33 0.00073 24.0 4.5 45 7-51 55-101 (310)
104 KOG3551|consensus 53.1 12 0.00027 28.3 2.3 41 10-50 447-498 (506)
105 PF07137 VDE: Violaxanthin de- 52.5 34 0.00074 23.3 4.1 46 11-57 55-122 (198)
106 PF09565 RE_NgoFVII: NgoFVII r 52.0 20 0.00044 25.5 3.1 29 4-32 225-255 (296)
107 TIGR01363 strep_his_triad stre 51.4 16 0.00035 26.7 2.6 42 3-45 287-329 (348)
108 PF05448 AXE1: Acetyl xylan es 50.5 28 0.00061 24.5 3.7 43 11-53 53-99 (320)
109 PF04602 Arabinose_trans: Myco 50.4 5.2 0.00011 31.5 0.0 16 20-35 263-278 (656)
110 PF10681 Rot1: Chaperone for p 49.5 28 0.00061 23.9 3.4 26 21-46 39-71 (212)
111 PF00756 Esterase: Putative es 47.7 23 0.00049 22.8 2.7 23 17-46 10-33 (251)
112 KOG2564|consensus 47.6 24 0.00053 25.7 3.0 29 27-55 62-92 (343)
113 cd00312 Esterase_lipase Estera 47.3 27 0.00059 25.1 3.3 25 20-45 74-103 (493)
114 PRK00377 cbiT cobalt-precorrin 47.2 31 0.00067 22.0 3.2 40 4-45 155-195 (198)
115 PRK03381 PII uridylyl-transfer 46.8 50 0.0011 26.1 4.8 33 3-35 616-648 (774)
116 cd03422 YedF YedF is a bacteri 46.5 33 0.00073 18.7 2.9 27 2-29 41-67 (69)
117 PF14090 HTH_39: Helix-turn-he 45.8 49 0.0011 18.1 3.6 19 7-25 37-57 (70)
118 COG4099 Predicted peptidase [G 45.3 32 0.0007 25.4 3.3 15 37-51 189-205 (387)
119 KOG2110|consensus 45.2 52 0.0011 24.6 4.4 37 15-52 313-351 (391)
120 PLN02606 palmitoyl-protein thi 45.0 15 0.00033 26.3 1.7 16 36-51 25-40 (306)
121 KOG1445|consensus 44.8 28 0.00061 28.2 3.2 34 12-46 638-678 (1012)
122 PRK04940 hypothetical protein; 44.2 15 0.00033 24.3 1.4 13 40-52 2-14 (180)
123 PRK00275 glnD PII uridylyl-tra 43.4 54 0.0012 26.5 4.6 33 3-35 721-754 (895)
124 PF08108 Antimicrobial13: Halo 42.4 9 0.0002 15.7 0.1 10 41-50 2-11 (15)
125 KOG1793|consensus 42.3 4.2 9E-05 30.4 -1.5 24 40-63 207-230 (417)
126 cd03423 SirA SirA (also known 42.3 45 0.00098 18.0 3.0 18 2-19 41-58 (69)
127 cd08358 Glo_EDI_BRP_like_21 Th 42.3 49 0.0011 20.3 3.5 26 5-30 95-125 (127)
128 PF12733 Cadherin-like: Cadher 41.9 41 0.00089 18.6 2.9 21 11-31 61-87 (88)
129 PF00151 Lipase: Lipase; Inte 41.8 15 0.00032 26.1 1.2 19 37-55 70-91 (331)
130 cd01766 Ufm1 Urm1-like ubiquit 41.6 28 0.00061 20.5 2.1 37 6-46 35-71 (82)
131 KOG2112|consensus 40.9 17 0.00037 24.8 1.3 15 40-54 6-20 (206)
132 PRK07079 hypothetical protein; 40.5 91 0.002 22.6 5.1 35 5-39 52-86 (469)
133 PRK11768 serine/threonine prot 39.9 31 0.00068 23.9 2.6 17 15-31 40-58 (325)
134 PF12294 DUF3626: Protein of u 39.7 24 0.00052 25.4 1.9 27 4-35 210-236 (297)
135 TIGR03230 lipo_lipase lipoprot 39.1 17 0.00038 27.1 1.3 18 38-55 42-61 (442)
136 TIGR03100 hydr1_PEP hydrolase, 39.1 84 0.0018 20.9 4.5 29 19-47 7-36 (274)
137 KOG2541|consensus 38.3 21 0.00045 25.7 1.5 16 37-52 23-38 (296)
138 PRK11152 ilvM acetolactate syn 38.2 62 0.0013 18.4 3.2 25 3-27 20-45 (76)
139 PF07521 RMMBL: RNA-metabolisi 37.7 21 0.00046 17.9 1.1 6 40-45 35-40 (43)
140 COG2345 Predicted transcriptio 37.3 30 0.00064 23.7 2.1 29 4-33 138-166 (218)
141 PF00975 Thioesterase: Thioest 37.2 26 0.00057 22.0 1.7 17 38-54 1-17 (229)
142 PF14702 hGDE_central: central 37.1 1.4E+02 0.0031 20.7 5.5 42 5-49 14-56 (260)
143 PF05728 UPF0227: Uncharacteri 36.9 23 0.00049 23.2 1.4 13 40-52 2-14 (187)
144 PF05959 DUF884: Nucleopolyhed 36.1 26 0.00057 23.4 1.6 13 22-34 71-83 (186)
145 COG0412 Dienelactone hydrolase 35.7 90 0.002 20.9 4.2 36 15-50 3-40 (236)
146 PRK06446 hypothetical protein; 35.6 1.2E+02 0.0026 21.7 5.1 42 4-49 32-73 (436)
147 TIGR01693 UTase_glnD [Protein- 35.1 1E+02 0.0022 24.5 4.9 32 3-34 685-717 (850)
148 KOG2237|consensus 34.9 59 0.0013 26.1 3.6 41 8-48 435-481 (712)
149 cd06232 Peptidase_M14-like_5 P 34.8 1E+02 0.0023 21.5 4.4 42 2-45 3-46 (240)
150 TIGR01445 intein_Nterm intein 34.7 51 0.0011 17.8 2.5 18 12-29 56-73 (81)
151 PF06821 Ser_hydrolase: Serine 33.6 29 0.00062 22.2 1.5 15 40-54 1-16 (171)
152 PRK06437 hypothetical protein; 32.8 59 0.0013 17.7 2.5 27 1-28 21-47 (67)
153 PRK14639 hypothetical protein; 32.8 1.1E+02 0.0023 19.3 4.0 31 1-31 1-32 (140)
154 PRK11018 hypothetical protein; 32.3 77 0.0017 17.7 3.0 25 2-28 50-75 (78)
155 PRK10222 PTS system L-ascorbat 32.2 39 0.00085 19.4 1.8 19 1-19 5-23 (85)
156 cd04873 ACT_UUR-ACR-like ACT d 31.4 79 0.0017 16.0 4.5 33 3-35 17-49 (70)
157 cd00291 SirA_YedF_YeeD SirA, Y 30.9 86 0.0019 16.4 2.9 26 2-28 41-66 (69)
158 PF02767 DNA_pol3_beta_2: DNA 30.9 46 0.00099 19.5 2.0 19 16-34 38-56 (116)
159 PF14371 DUF4412: Domain of un 30.8 71 0.0015 17.6 2.7 11 10-20 10-20 (89)
160 KOG1546|consensus 30.7 49 0.0011 24.4 2.4 28 6-35 94-121 (362)
161 PF14120 YhzD: YhzD-like prote 30.6 82 0.0018 17.6 2.8 27 5-31 35-61 (61)
162 PF14451 Ub-Mut7C: Mut7-C ubiq 29.9 57 0.0012 18.8 2.2 34 2-35 34-67 (81)
163 PRK03381 PII uridylyl-transfer 29.6 1.4E+02 0.0031 23.7 4.9 34 3-36 724-757 (774)
164 PF09637 Med18: Med18 protein; 29.4 1.1E+02 0.0023 20.8 3.8 32 2-33 142-178 (250)
165 PRK00275 glnD PII uridylyl-tra 28.6 1.5E+02 0.0032 24.1 4.9 34 3-36 831-864 (895)
166 PRK07907 hypothetical protein; 28.3 1.9E+02 0.0041 20.8 5.1 39 4-45 51-90 (449)
167 PRK01759 glnD PII uridylyl-tra 28.3 1.5E+02 0.0033 23.8 4.9 32 3-34 694-726 (854)
168 COG4196 Uncharacterized protei 28.0 65 0.0014 25.5 2.7 29 17-45 213-251 (808)
169 PRK07522 acetylornithine deace 27.8 1.8E+02 0.004 20.0 4.8 24 4-27 32-55 (385)
170 COG2936 Predicted acyl esteras 26.6 1.2E+02 0.0025 23.7 3.9 33 9-42 14-49 (563)
171 cd01085 APP X-Prolyl Aminopept 26.5 34 0.00074 22.7 0.9 18 9-26 203-220 (224)
172 PRK03059 PII uridylyl-transfer 26.2 1.4E+02 0.003 24.1 4.4 30 3-32 695-725 (856)
173 PF03197 FRD2: Bacteriophage F 25.8 90 0.0019 19.2 2.6 30 2-32 1-30 (102)
174 cd04865 LigD_Pol_like_2 LigD_P 25.7 91 0.002 21.5 2.9 32 24-55 21-52 (228)
175 PF00863 Peptidase_C4: Peptida 25.6 69 0.0015 22.2 2.3 18 18-35 157-174 (235)
176 PRK14633 hypothetical protein; 25.3 1.7E+02 0.0036 18.6 4.0 28 4-31 11-38 (150)
177 PRK05231 homoserine kinase; Pr 24.8 81 0.0018 21.2 2.6 21 11-31 33-54 (319)
178 PF06877 RraB: Regulator of ri 24.7 1.3E+02 0.0027 17.2 3.1 30 3-32 41-73 (104)
179 cd03420 SirA_RHOD_Pry_redox Si 24.6 1.2E+02 0.0025 16.4 2.8 16 2-17 41-56 (69)
180 PF10994 DUF2817: Protein of u 24.4 2.8E+02 0.0061 20.1 5.6 55 3-57 12-107 (341)
181 cd04863 MtLigD_Pol_like MtLigD 24.4 1E+02 0.0022 21.3 3.0 32 24-55 21-52 (231)
182 cd04864 LigD_Pol_like_1 LigD_P 24.2 1E+02 0.0022 21.3 3.0 33 24-56 21-53 (228)
183 cd00560 PanC Pantoate-beta-ala 24.0 87 0.0019 22.0 2.6 26 3-28 158-186 (277)
184 PF10087 DUF2325: Uncharacteri 23.9 68 0.0015 18.3 1.8 31 3-35 15-45 (97)
185 PF13224 DUF4032: Domain of un 23.7 1.2E+02 0.0026 20.0 3.1 24 7-30 28-52 (165)
186 TIGR02778 ligD_pol DNA polymer 23.6 1E+02 0.0022 21.5 2.9 34 23-56 37-70 (245)
187 cd04861 LigD_Pol_like LigD_Pol 23.3 1.1E+02 0.0023 21.1 2.9 34 24-57 21-54 (227)
188 cd04862 PaeLigD_Pol_like PaeLi 22.9 1.1E+02 0.0024 21.0 3.0 33 24-56 21-53 (227)
189 COG2844 GlnD UTP:GlnB (protein 22.9 1.7E+02 0.0036 24.2 4.2 28 6-33 704-732 (867)
190 PF13670 PepSY_2: Peptidase pr 22.8 1.5E+02 0.0033 16.4 3.5 25 4-28 35-59 (83)
191 PF14830 Haemocyan_bet_s: Haem 22.6 56 0.0012 20.0 1.3 18 40-57 10-29 (103)
192 PF00462 Glutaredoxin: Glutare 22.5 75 0.0016 16.1 1.7 21 3-23 15-35 (60)
193 cd03418 GRX_GRXb_1_3_like Glut 22.2 17 0.00037 19.2 -1.0 43 3-45 16-59 (75)
194 PHA02264 hypothetical protein 22.2 53 0.0012 21.1 1.2 29 4-32 102-131 (152)
195 PRK06133 glutamate carboxypept 22.1 2.8E+02 0.006 19.7 4.9 17 4-20 67-83 (410)
196 PF09133 SANTA: SANTA (SANT As 22.1 79 0.0017 18.5 1.8 17 15-31 41-57 (93)
197 PF06309 Torsin: Torsin; Inte 22.1 53 0.0012 20.7 1.2 20 36-55 50-70 (127)
198 PF03462 PCRF: PCRF domain; I 22.1 1.9E+02 0.0041 17.3 3.9 29 6-34 75-105 (115)
199 KOG3483|consensus 21.7 1.2E+02 0.0025 18.0 2.5 36 7-46 47-82 (94)
200 PF06028 DUF915: Alpha/beta hy 21.7 56 0.0012 22.5 1.3 17 37-53 11-27 (255)
201 PRK05092 PII uridylyl-transfer 21.7 2.3E+02 0.0051 22.9 4.9 33 3-35 860-892 (931)
202 cd03870 M14_CPA Peptidase M14 21.7 3E+02 0.0064 19.3 5.5 41 6-46 19-62 (301)
203 PLN02733 phosphatidylcholine-s 21.5 60 0.0013 24.2 1.5 14 37-50 19-32 (440)
204 cd04897 ACT_ACR_3 ACT domain-c 21.4 1.7E+02 0.0037 16.5 4.1 33 3-35 18-50 (75)
205 PF13786 DUF4179: Domain of un 21.2 89 0.0019 17.4 1.9 28 9-36 54-81 (94)
206 PF02149 KA1: Kinase associate 21.1 1.4E+02 0.003 15.3 2.9 23 12-34 7-29 (47)
207 cd04866 LigD_Pol_like_3 LigD_P 20.9 1.3E+02 0.0028 20.7 2.9 33 24-56 21-53 (223)
208 PRK04374 PII uridylyl-transfer 20.8 2.6E+02 0.0055 22.7 4.9 37 3-39 707-744 (869)
209 PF11149 DUF2924: Protein of u 20.6 77 0.0017 20.2 1.7 16 12-27 91-107 (136)
210 COG2104 ThiS Sulfur transfer p 20.6 1.4E+02 0.0029 16.6 2.5 20 1-20 18-37 (68)
211 cd03027 GRX_DEP Glutaredoxin ( 20.4 22 0.00048 19.0 -0.7 21 3-23 17-37 (73)
212 cd07257 THT_oxygenase_C The C- 20.1 2.2E+02 0.0047 17.2 3.8 26 5-30 86-123 (153)
213 PRK07440 hypothetical protein; 20.0 1.5E+02 0.0032 16.3 2.6 20 1-20 20-39 (70)
No 1
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=99.97 E-value=2.1e-31 Score=150.50 Aligned_cols=55 Identities=51% Similarity=0.833 Sum_probs=40.3
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCCC-------Ccc-EEEecccccCcccceecC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG-------GYP-VLMLHGLTVSSDCWFLRT 57 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~-------~~p-VlL~HGl~~ss~~wv~~g 57 (64)
+.|+|+++||++|+|.|+|+|||+|+|||||.++ +|| |||||||++||++|++||
T Consensus 1 ~~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~wv~ng 63 (63)
T PF04083_consen 1 VPELIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDWVLNG 63 (63)
T ss_dssp HHHHHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGGCSS-
T ss_pred CHHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHHHcCC
Confidence 5799999999999999999999999999998775 455 999999999999999986
No 2
>KOG2624|consensus
Probab=99.94 E-value=2.8e-27 Score=170.35 Aligned_cols=64 Identities=48% Similarity=0.843 Sum_probs=60.5
Q ss_pred CCHHHHHhhcCCcceEEEEecCCCcEEEEEEecCC-CCcc-EEEecccccCcccceecCCCCCCCC
Q psy1426 1 MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP-GGYP-VLMLHGLTVSSDCWFLRTPKEDLGR 64 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~-~~~p-VlL~HGl~~ss~~wv~~gp~~SLa~ 64 (64)
+++.++++.+||++|+|.|+|+|||||++||||.+ .+|| |||||||++||+.|++|+|++||||
T Consensus 35 ~~~~~~i~~~gy~~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf 100 (403)
T KOG2624|consen 35 MDTPEIIEKYGYPVEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAF 100 (403)
T ss_pred ccHHHHHHHcCCceEEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHH
Confidence 46789999999999999999999999999999988 5667 9999999999999999999999997
No 3
>PLN02872 triacylglycerol lipase
Probab=99.83 E-value=5.1e-21 Score=136.78 Aligned_cols=62 Identities=39% Similarity=0.743 Sum_probs=55.3
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCCC------Ccc-EEEecccccCcccceecCCCCCCCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG------GYP-VLMLHGLTVSSDCWFLRTPKEDLGR 64 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~------~~p-VlL~HGl~~ss~~wv~~gp~~SLa~ 64 (64)
+.|+|+++|||+|+|.|+|+|||+|+++|||.++ ++| |+|+||++++++.|+.++|++||||
T Consensus 33 ~~~~i~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~ 101 (395)
T PLN02872 33 CAQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGF 101 (395)
T ss_pred HHHHHHHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHH
Confidence 3689999999999999999999999999998532 244 9999999999999999999899874
No 4
>PHA02857 monoglyceride lipase; Provisional
Probab=95.82 E-value=0.015 Score=38.15 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=26.8
Q ss_pred EecCCCcEEEEEEe-cCCCCcc-EEEecccccCccccee
Q psy1426 19 ILTEDGYILTVFRI-PNPGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 19 v~T~DGyiL~l~Ri-~~~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
..+.||+.|-..+. |....+| |||.||+.+++..|-.
T Consensus 5 ~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~ 43 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEE 43 (276)
T ss_pred eecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHH
Confidence 45679998887654 4334567 7777999999887753
No 5
>PLN02511 hydrolase
Probab=95.81 E-value=0.025 Score=40.23 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=32.6
Q ss_pred CCcceEEEEecCCCcEEEEEEecC-----CCCcc-EEEecccccCcc-cce
Q psy1426 11 NYPSEEHKILTEDGYILTVFRIPN-----PGGYP-VLMLHGLTVSSD-CWF 54 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~l~Ri~~-----~~~~p-VlL~HGl~~ss~-~wv 54 (64)
....+...++|+||-.+.+-.... +..+| |+|+||+..++. .|+
T Consensus 68 ~~~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~ 118 (388)
T PLN02511 68 AVRYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYV 118 (388)
T ss_pred CCceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHH
Confidence 345677789999999999866531 23567 999999988875 365
No 6
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=95.49 E-value=0.037 Score=38.18 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=32.2
Q ss_pred cCCcceEEEEecCCCcEEEEEEe-cCC-CCcc-EEEecccccCcccc
Q psy1426 10 WNYPSEEHKILTEDGYILTVFRI-PNP-GGYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 10 ~gy~~e~h~v~T~DGyiL~l~Ri-~~~-~~~p-VlL~HGl~~ss~~w 53 (64)
.|+..++....+.||..|-.... |.. +.+| |+|+||+.+++..|
T Consensus 57 ~~~~~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~ 103 (349)
T PLN02385 57 SGIKTEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFF 103 (349)
T ss_pred cCcceeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchH
Confidence 46778888888999998766554 322 3456 99999998887644
No 7
>PRK10749 lysophospholipase L2; Provisional
Probab=95.24 E-value=0.033 Score=38.32 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=28.0
Q ss_pred cceEEEEecCCCcEEEEEEecCCCCcc-EEEecccccCcccc
Q psy1426 13 PSEEHKILTEDGYILTVFRIPNPGGYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 13 ~~e~h~v~T~DGyiL~l~Ri~~~~~~p-VlL~HGl~~ss~~w 53 (64)
.-|+..+...||+.|..........++ |+|+||+.+++..|
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y 70 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKY 70 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHH
Confidence 335566667899987766644323344 99999998887655
No 8
>PRK03204 haloalkane dehalogenase; Provisional
Probab=94.77 E-value=0.047 Score=36.73 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=29.6
Q ss_pred hcCCcceEEEEecCCCcEEEEEEecCCCCccEEEecccccCcccce
Q psy1426 9 FWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 9 ~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv 54 (64)
.+.|+.+...+++ +|..+. -...+.+.||+|+||+.+++..|-
T Consensus 9 ~~~~~~~~~~~~~-~~~~i~--y~~~G~~~~iv~lHG~~~~~~~~~ 51 (286)
T PRK03204 9 PQLYPFESRWFDS-SRGRIH--YIDEGTGPPILLCHGNPTWSFLYR 51 (286)
T ss_pred CccccccceEEEc-CCcEEE--EEECCCCCEEEEECCCCccHHHHH
Confidence 3678888888888 455443 323344445999999988877773
No 9
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=94.76 E-value=0.11 Score=37.44 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=34.7
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEE-EecCC-CCcc-EEEecccccCc-ccc
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVF-RIPNP-GGYP-VLMLHGLTVSS-DCW 53 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~-Ri~~~-~~~p-VlL~HGl~~ss-~~w 53 (64)
.+-++..++++|+..+.++||..|.-+ .+|.+ +++| |++.||+-+.. +.|
T Consensus 158 ~~a~~~~~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~ 211 (414)
T PRK05077 158 EEAAKRLPGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYY 211 (414)
T ss_pred HHHHhhcCCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhH
Confidence 345667899999999999999666644 45653 3567 77777766543 445
No 10
>PRK05855 short chain dehydrogenase; Validated
Probab=94.67 E-value=0.054 Score=38.81 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=27.2
Q ss_pred EEEecCCCcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 17 HKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 17 h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
..+.+.||-.|..+....+.++||+|+||+.+++..|-.
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~ 43 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDG 43 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHH
Confidence 344566888887665433333459999999999988753
No 11
>PRK10985 putative hydrolase; Provisional
Probab=94.64 E-value=0.084 Score=36.26 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCcceEEEEecCCCcEEEEEEecCC---CCcc-EEEecccccCccc
Q psy1426 11 NYPSEEHKILTEDGYILTVFRIPNP---GGYP-VLMLHGLTVSSDC 52 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~l~Ri~~~---~~~p-VlL~HGl~~ss~~ 52 (64)
..+.+...++++||-.+.+.....+ ..+| |+++||+.+++..
T Consensus 28 ~~~~~~~~~~~~dg~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~ 73 (324)
T PRK10985 28 LFTPYWQRLELPDGDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNS 73 (324)
T ss_pred CCCcceeEEECCCCCEEEEecCCCCccCCCCCEEEEeCCCCCCCcC
Confidence 3456777899999988888776432 2457 9999999887553
No 12
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=94.51 E-value=0.081 Score=34.93 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=24.6
Q ss_pred ecCCCcEEEEEEecCCCC-ccEEEecccccCcccce
Q psy1426 20 LTEDGYILTVFRIPNPGG-YPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 20 ~T~DGyiL~l~Ri~~~~~-~pVlL~HGl~~ss~~wv 54 (64)
.+-||..+.......+.+ +||+|.||+.+++..|-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~ 42 (276)
T TIGR02240 7 IDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVF 42 (276)
T ss_pred eccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHH
Confidence 344777766655433333 56999999999999884
No 13
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=94.48 E-value=0.13 Score=34.93 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEEEe-cCC--CCcc-EEEecccccCc
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVFRI-PNP--GGYP-VLMLHGLTVSS 50 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri-~~~--~~~p-VlL~HGl~~ss 50 (64)
.+..+-.|.+.+...+++.||-.|-..+- |.+ +.++ |+|+||+..++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~ 72 (330)
T PLN02298 22 EEYYALKGIKGSKSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDI 72 (330)
T ss_pred HHHhhccCCccccceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCc
Confidence 44566678888888899999998876543 332 2456 99999997654
No 14
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=94.34 E-value=0.053 Score=36.03 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=24.0
Q ss_pred cCCCcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 21 TEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 21 T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
+-||+.+..... ..++.||+|+||+.+++..|-.
T Consensus 14 ~~~~~~i~y~~~-G~~~~~vlllHG~~~~~~~w~~ 47 (294)
T PLN02824 14 RWKGYNIRYQRA-GTSGPALVLVHGFGGNADHWRK 47 (294)
T ss_pred EEcCeEEEEEEc-CCCCCeEEEECCCCCChhHHHH
Confidence 337887765443 2234469999999999999954
No 15
>PRK03592 haloalkane dehalogenase; Provisional
Probab=93.92 E-value=0.083 Score=35.12 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=23.3
Q ss_pred cCCCcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 21 TEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 21 T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
|-||..+..... +.++||+|+||+.+++..|-.
T Consensus 13 ~~~g~~i~y~~~--G~g~~vvllHG~~~~~~~w~~ 45 (295)
T PRK03592 13 EVLGSRMAYIET--GEGDPIVFLHGNPTSSYLWRN 45 (295)
T ss_pred EECCEEEEEEEe--CCCCEEEEECCCCCCHHHHHH
Confidence 347876554443 345579999999999998853
No 16
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=93.76 E-value=0.12 Score=37.24 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=27.4
Q ss_pred CCcceEEEEecCCCcEEEEEEecCCCCccEEEecccccCcccce
Q psy1426 11 NYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv 54 (64)
|.+.-.+.-.+.|||.+-...-..+.+.||+|+||+.+++..|-
T Consensus 101 ~~~~~~~~~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~ 144 (383)
T PLN03084 101 GLKMGAQSQASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYR 144 (383)
T ss_pred cccccceeEEcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHH
Confidence 44433444456788877433321112334999999999998885
No 17
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=93.74 E-value=0.078 Score=34.04 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=26.0
Q ss_pred EEEecCCCcEEEEEEecCCCCccEEEecccccCcccce
Q psy1426 17 HKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 17 h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv 54 (64)
.+.++-||+.+-........+.+|++.||+..++..|-
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~ 45 (278)
T TIGR03056 8 SRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWR 45 (278)
T ss_pred cceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHH
Confidence 44556688887765542222334999999999988874
No 18
>PLN02578 hydrolase
Probab=93.29 E-value=0.1 Score=36.27 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=25.8
Q ss_pred CCcceEEEEecCCCcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 11 NYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
+++-+....-+.+|..+... ..+++.||+|+||+.+++..|-.
T Consensus 62 ~~~~~~~~~~~~~~~~i~Y~--~~g~g~~vvliHG~~~~~~~w~~ 104 (354)
T PLN02578 62 PFKKEGYNFWTWRGHKIHYV--VQGEGLPIVLIHGFGASAFHWRY 104 (354)
T ss_pred cccCCCceEEEECCEEEEEE--EcCCCCeEEEECCCCCCHHHHHH
Confidence 34433334334456444432 23445569999999999988854
No 19
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=93.27 E-value=0.17 Score=32.99 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=23.4
Q ss_pred EEEEecCCCcE-EEEEEecCCCCccEEEecccccCcccce
Q psy1426 16 EHKILTEDGYI-LTVFRIPNPGGYPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 16 ~h~v~T~DGyi-L~l~Ri~~~~~~pVlL~HGl~~ss~~wv 54 (64)
+..+.|.+|-. ..++....+.+.||+|+||+.+++..|-
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~g~~~~ivllHG~~~~~~~~~ 47 (282)
T TIGR03343 8 KFVKINEKGLSNFRIHYNEAGNGEAVIMLHGGGPGAGGWS 47 (282)
T ss_pred eEEEcccccccceeEEEEecCCCCeEEEECCCCCchhhHH
Confidence 34455566442 3344333344445999999988887773
No 20
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=93.13 E-value=0.16 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred ecCCCcEEEEEEecCCC-CccEEEecccccCcccce
Q psy1426 20 LTEDGYILTVFRIPNPG-GYPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 20 ~T~DGyiL~l~Ri~~~~-~~pVlL~HGl~~ss~~wv 54 (64)
.|-||..+...+..... +.||+++||...++..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~ 42 (288)
T TIGR01250 7 ITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYL 42 (288)
T ss_pred ecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHH
Confidence 34444445555543223 345999999877776553
No 21
>PRK06489 hypothetical protein; Provisional
Probab=92.97 E-value=0.16 Score=35.32 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.5
Q ss_pred ccEEEecccccCcccce
Q psy1426 38 YPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 38 ~pVlL~HGl~~ss~~wv 54 (64)
.||+|+||+.+++..|.
T Consensus 70 pplvllHG~~~~~~~~~ 86 (360)
T PRK06489 70 NAVLVLHGTGGSGKSFL 86 (360)
T ss_pred CeEEEeCCCCCchhhhc
Confidence 45999999999988875
No 22
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=92.68 E-value=0.24 Score=33.49 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=25.3
Q ss_pred eEEEEecCCCcEEEEEEecCCCCccEEEecccccCccc
Q psy1426 15 EEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDC 52 (64)
Q Consensus 15 e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~ 52 (64)
++-.+...||..+....-..+++.||+|+||..+++..
T Consensus 5 ~~~~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~ 42 (306)
T TIGR01249 5 VSGYLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTD 42 (306)
T ss_pred cCCeEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCC
Confidence 45567788887776555322235569999998776554
No 23
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=92.48 E-value=0.087 Score=35.49 Aligned_cols=26 Identities=27% Similarity=0.677 Sum_probs=18.8
Q ss_pred EEEecCCCCcc-EEEecccccCcccce
Q psy1426 29 VFRIPNPGGYP-VLMLHGLTVSSDCWF 54 (64)
Q Consensus 29 l~Ri~~~~~~p-VlL~HGl~~ss~~wv 54 (64)
+++|...+++| |+|+||+..++..|-
T Consensus 9 ~~~~~~~~~~p~vvliHG~~~~~~~w~ 35 (273)
T PLN02211 9 VTDMKPNRQPPHFVLIHGISGGSWCWY 35 (273)
T ss_pred cccccccCCCCeEEEECCCCCCcCcHH
Confidence 44453334456 999999999999883
No 24
>KOG1454|consensus
Probab=91.99 E-value=0.39 Score=33.88 Aligned_cols=45 Identities=33% Similarity=0.360 Sum_probs=28.6
Q ss_pred EEEEecCCCc-EEEEEEecCC---------CCccEEEecccccCcccceecCCCC
Q psy1426 16 EHKILTEDGY-ILTVFRIPNP---------GGYPVLMLHGLTVSSDCWFLRTPKE 60 (64)
Q Consensus 16 ~h~v~T~DGy-iL~l~Ri~~~---------~~~pVlL~HGl~~ss~~wv~~gp~~ 60 (64)
...++-..|. -..-.+++.. .+.||+++||+.+|+..|-.+-|..
T Consensus 27 ~~~i~~~~g~~~~~~~w~~~~~~~~~~~~~~~~pvlllHGF~~~~~~w~~~~~~L 81 (326)
T KOG1454|consen 27 STSIEIPWGPLTIRSKWIPNLDKYGSPGDKDKPPVLLLHGFGASSFSWRRVVPLL 81 (326)
T ss_pred ceEEEcccCCceeEEEEeccceeccCCCCCCCCcEEEeccccCCcccHhhhcccc
Confidence 3344444554 3334444444 2345999999999999998876543
No 25
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=91.55 E-value=0.097 Score=33.35 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=15.9
Q ss_pred cc-EEEecccccCcccceec
Q psy1426 38 YP-VLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 38 ~p-VlL~HGl~~ss~~wv~~ 56 (64)
+| |+|+||+.+++..|-..
T Consensus 2 ~p~vvllHG~~~~~~~w~~~ 21 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPV 21 (242)
T ss_pred CCEEEEECCCCCChHHHHHH
Confidence 45 99999999999998643
No 26
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=91.40 E-value=0.41 Score=33.00 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=27.1
Q ss_pred EEEEecCCCcEEEEEEecCCC-Ccc-EEEecccccCc
Q psy1426 16 EHKILTEDGYILTVFRIPNPG-GYP-VLMLHGLTVSS 50 (64)
Q Consensus 16 ~h~v~T~DGyiL~l~Ri~~~~-~~p-VlL~HGl~~ss 50 (64)
-..+++++|-....++.|... .+| |+++||+....
T Consensus 2 ~~~l~~~~g~~~~~~~~p~~~~~~~~VlllHG~g~~~ 38 (266)
T TIGR03101 2 PFFLDAPHGFRFCLYHPPVAVGPRGVVIYLPPFAEEM 38 (266)
T ss_pred CEEecCCCCcEEEEEecCCCCCCceEEEEECCCcccc
Confidence 457889999999999987653 356 88999987643
No 27
>PRK00870 haloalkane dehalogenase; Provisional
Probab=91.38 E-value=0.46 Score=31.76 Aligned_cols=44 Identities=32% Similarity=0.414 Sum_probs=28.0
Q ss_pred CCcceEEEEe--cCCCcEEEEEEecCCC--CccEEEecccccCcccce
Q psy1426 11 NYPSEEHKIL--TEDGYILTVFRIPNPG--GYPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 11 gy~~e~h~v~--T~DGyiL~l~Ri~~~~--~~pVlL~HGl~~ss~~wv 54 (64)
.||.....|+ .-||-...++-...+. ++||+|+||+.+++..|-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~ 63 (302)
T PRK00870 16 DYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYR 63 (302)
T ss_pred CCCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHH
Confidence 4555555554 3345555566555443 345999999998888875
No 28
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=90.56 E-value=0.22 Score=31.10 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=15.6
Q ss_pred Ccc-EEEecccccCccccee
Q psy1426 37 GYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~wv~ 55 (64)
++| |+|.||+.+++..|..
T Consensus 12 ~~~~iv~lhG~~~~~~~~~~ 31 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGSYWAP 31 (257)
T ss_pred CCCEEEEEcCCCcchhHHHH
Confidence 355 9999999999988853
No 29
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=90.28 E-value=0.72 Score=33.59 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=31.6
Q ss_pred CcceEEEEecCCCcEEEEEEec--CCCCcc-EEEecccccCccc
Q psy1426 12 YPSEEHKILTEDGYILTVFRIP--NPGGYP-VLMLHGLTVSSDC 52 (64)
Q Consensus 12 y~~e~h~v~T~DGyiL~l~Ri~--~~~~~p-VlL~HGl~~ss~~ 52 (64)
..-....|.|.||=..++.... ..+++| |++.|||-.+|.+
T Consensus 47 ~~~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s 90 (345)
T COG0429 47 VAYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNS 90 (345)
T ss_pred cccceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCCcC
Confidence 3445567889999988887774 345788 9999999999873
No 30
>PRK10349 carboxylesterase BioH; Provisional
Probab=89.97 E-value=0.17 Score=32.76 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=16.6
Q ss_pred CCCcc-EEEecccccCccccee
Q psy1426 35 PGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 35 ~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
+++.| |+|+||+.+++..|-.
T Consensus 10 G~g~~~ivllHG~~~~~~~w~~ 31 (256)
T PRK10349 10 GQGNVHLVLLHGWGLNAEVWRC 31 (256)
T ss_pred CCCCCeEEEECCCCCChhHHHH
Confidence 34455 9999999999999853
No 31
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=89.79 E-value=0.34 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCCC-cc-EEEecccccCcccc
Q psy1426 24 GYILTVFRIPNPGG-YP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 24 GyiL~l~Ri~~~~~-~p-VlL~HGl~~ss~~w 53 (64)
|..|-..+.+..++ |. |++.||+...+..|
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry 32 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRY 32 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHH
Confidence 45566666544443 66 89999998887643
No 32
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=89.33 E-value=0.24 Score=30.44 Aligned_cols=17 Identities=12% Similarity=0.473 Sum_probs=14.6
Q ss_pred cEEEecccccCccccee
Q psy1426 39 PVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv~ 55 (64)
||+++||+.+++..|-.
T Consensus 6 ~iv~~HG~~~~~~~~~~ 22 (245)
T TIGR01738 6 HLVLIHGWGMNAEVFRC 22 (245)
T ss_pred eEEEEcCCCCchhhHHH
Confidence 49999999999998843
No 33
>KOG4391|consensus
Probab=88.91 E-value=1 Score=31.87 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=41.8
Q ss_pred hhcCCcceEEEEecCCCcEEEEEEecCCCCcc-EEEecccccCccccee
Q psy1426 8 RFWNYPSEEHKILTEDGYILTVFRIPNPGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 8 ~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
+.+|.|.|...+.|.|.-.|.-|.+...+.+| +|..|+-..|...++.
T Consensus 48 ~~~n~pye~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~ 96 (300)
T KOG4391|consen 48 KEFNMPYERIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLP 96 (300)
T ss_pred cccCCCceEEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhh
Confidence 45789999999999999999999998777888 9999999988876554
No 34
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=88.77 E-value=0.6 Score=34.45 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=26.9
Q ss_pred hhcCCcceEEEEecCCCcEEEEEEe-cCC--CCcc-EEEecccccCc
Q psy1426 8 RFWNYPSEEHKILTEDGYILTVFRI-PNP--GGYP-VLMLHGLTVSS 50 (64)
Q Consensus 8 ~~~gy~~e~h~v~T~DGyiL~l~Ri-~~~--~~~p-VlL~HGl~~ss 50 (64)
++-||..|...+.+.++.....+=+ |.+ ++-| ||++||=....
T Consensus 82 qrdGY~~EKv~f~~~p~~~vpaylLvPd~~~~p~PAVL~lHgHg~~K 128 (390)
T PF12715_consen 82 QRDGYTREKVEFNTTPGSRVPAYLLVPDGAKGPFPAVLCLHGHGGGK 128 (390)
T ss_dssp EETTEEEEEEEE--STTB-EEEEEEEETT--S-EEEEEEE--TT--H
T ss_pred ecCCeEEEEEEEEccCCeeEEEEEEecCCCCCCCCEEEEeCCCCCCc
Confidence 5679999999999999999887744 665 2446 99999865443
No 35
>PRK10673 acyl-CoA esterase; Provisional
Probab=87.59 E-value=0.37 Score=30.81 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.3
Q ss_pred ccEEEecccccCcccce
Q psy1426 38 YPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 38 ~pVlL~HGl~~ss~~wv 54 (64)
.||+++||+.+++..|-
T Consensus 17 ~~iv~lhG~~~~~~~~~ 33 (255)
T PRK10673 17 SPIVLVHGLFGSLDNLG 33 (255)
T ss_pred CCEEEECCCCCchhHHH
Confidence 34999999999988774
No 36
>PRK10162 acetyl esterase; Provisional
Probab=87.11 E-value=1.6 Score=30.12 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=24.7
Q ss_pred cceEEEEecCCCc-EEEEEEecCCCCcc-EEEecc---cccCcccc
Q psy1426 13 PSEEHKILTEDGY-ILTVFRIPNPGGYP-VLMLHG---LTVSSDCW 53 (64)
Q Consensus 13 ~~e~h~v~T~DGy-iL~l~Ri~~~~~~p-VlL~HG---l~~ss~~w 53 (64)
.+|+..|.+.||- .+.+|+ |.....| |++.|| ...+.+.|
T Consensus 56 ~~~~~~i~~~~g~i~~~~y~-P~~~~~p~vv~~HGGg~~~g~~~~~ 100 (318)
T PRK10162 56 ATRAYMVPTPYGQVETRLYY-PQPDSQATLFYLHGGGFILGNLDTH 100 (318)
T ss_pred eEEEEEEecCCCceEEEEEC-CCCCCCCEEEEEeCCcccCCCchhh
Confidence 4678889898883 233333 4334457 889999 33444444
No 37
>PRK11071 esterase YqiA; Provisional
Probab=87.09 E-value=0.35 Score=31.17 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.5
Q ss_pred cEEEecccccCcccce
Q psy1426 39 PVLMLHGLTVSSDCWF 54 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv 54 (64)
||+++||+.+|+.+|-
T Consensus 3 ~illlHGf~ss~~~~~ 18 (190)
T PRK11071 3 TLLYLHGFNSSPRSAK 18 (190)
T ss_pred eEEEECCCCCCcchHH
Confidence 5999999999999885
No 38
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=86.73 E-value=0.62 Score=28.62 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=15.1
Q ss_pred Ccc-EEEecccccCcccce
Q psy1426 37 GYP-VLMLHGLTVSSDCWF 54 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~wv 54 (64)
++| +++.||+.+++..|-
T Consensus 12 ~~~~li~~hg~~~~~~~~~ 30 (251)
T TIGR02427 12 GAPVLVFINSLGTDLRMWD 30 (251)
T ss_pred CCCeEEEEcCcccchhhHH
Confidence 566 899999999998884
No 39
>KOG4178|consensus
Probab=86.43 E-value=1 Score=32.45 Aligned_cols=42 Identities=33% Similarity=0.567 Sum_probs=31.2
Q ss_pred eEEEEecCCCcEEEEEEecCC-CCcc-EEEecccccCcccceecCC
Q psy1426 15 EEHKILTEDGYILTVFRIPNP-GGYP-VLMLHGLTVSSDCWFLRTP 58 (64)
Q Consensus 15 e~h~v~T~DGyiL~l~Ri~~~-~~~p-VlL~HGl~~ss~~wv~~gp 58 (64)
-+|...|-+| +.+|-...+ ...| |||.||+=.++.+|--..+
T Consensus 22 ~~hk~~~~~g--I~~h~~e~g~~~gP~illlHGfPe~wyswr~q~~ 65 (322)
T KOG4178|consen 22 ISHKFVTYKG--IRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQIP 65 (322)
T ss_pred cceeeEEEcc--EEEEEEeecCCCCCEEEEEccCCccchhhhhhhh
Confidence 4677888888 666655444 3568 9999999999999965543
No 40
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=86.27 E-value=0.4 Score=29.30 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.5
Q ss_pred cEEEecccccCccccee
Q psy1426 39 PVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv~ 55 (64)
+|+++||+..++..|-.
T Consensus 3 ~vv~~hG~~~~~~~~~~ 19 (251)
T TIGR03695 3 VLVFLHGFLGSGADWQA 19 (251)
T ss_pred EEEEEcCCCCchhhHHH
Confidence 49999999999998854
No 41
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=86.08 E-value=2.8 Score=31.12 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=36.2
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEEEecCCC-Ccc-EEEecccccCccc
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG-GYP-VLMLHGLTVSSDC 52 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~-~~p-VlL~HGl~~ss~~ 52 (64)
.+-++..+|++|+..|.-+++-+-...|+|.+. +.| |++.=|+=+-.++
T Consensus 155 ~~Aa~l~~~~i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD 205 (411)
T PF06500_consen 155 EKAAKLSDYPIEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQED 205 (411)
T ss_dssp HHHHHHSSSEEEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGG
T ss_pred HHHHHhCCCCcEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHH
Confidence 346788999999999999999999999999864 456 6676776655544
No 42
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=85.96 E-value=0.38 Score=31.15 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=13.1
Q ss_pred CCCCcc-EEEecccccCccccee
Q psy1426 34 NPGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 34 ~~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
.++.+| |+++||+.++.+.|..
T Consensus 10 ~~~~~~lvi~LHG~G~~~~~~~~ 32 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSEDLFAL 32 (216)
T ss_dssp SST-SEEEEEE--TTS-HHHHHH
T ss_pred CCCCceEEEEECCCCCCcchhHH
Confidence 344667 9999999999876643
No 43
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.84 E-value=3.5 Score=23.02 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.5
Q ss_pred HHHHHhhcCCcceEEEEec-CCCcEEEEEEecCCC
Q psy1426 3 TDDMIRFWNYPSEEHKILT-EDGYILTVFRIPNPG 36 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T-~DGyiL~l~Ri~~~~ 36 (64)
+...+..+|..+..-+|.| .||+.+..|.+..+.
T Consensus 17 i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 17 VTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred HHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 4567889999999988885 999999999996543
No 44
>PRK11460 putative hydrolase; Provisional
Probab=85.36 E-value=0.58 Score=30.92 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.1
Q ss_pred CCCcc-EEEecccccCccccee
Q psy1426 35 PGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 35 ~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
.+.+| |++.||+.+|...|..
T Consensus 13 ~~~~~~vIlLHG~G~~~~~~~~ 34 (232)
T PRK11460 13 KPAQQLLLLFHGVGDNPVAMGE 34 (232)
T ss_pred CCCCcEEEEEeCCCCChHHHHH
Confidence 34556 9999999999887643
No 45
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=85.28 E-value=1.1 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=24.9
Q ss_pred EecCCCcEEEEEEecCCCCcc-EEEecccccCcc
Q psy1426 19 ILTEDGYILTVFRIPNPGGYP-VLMLHGLTVSSD 51 (64)
Q Consensus 19 v~T~DGyiL~l~Ri~~~~~~p-VlL~HGl~~ss~ 51 (64)
+++.||..|..++-.....|. |++.||+...+.
T Consensus 2 ~~~~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~ 35 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKNAIGIIVLIHGLKSHLR 35 (332)
T ss_pred ccCCCCCeEEEeeeeccCCeEEEEEECCCchhhh
Confidence 568899988777654333455 999999998886
No 46
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=85.25 E-value=1.1 Score=30.31 Aligned_cols=19 Identities=32% Similarity=0.882 Sum_probs=15.5
Q ss_pred CccEEEecccccCccccee
Q psy1426 37 GYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 37 ~~pVlL~HGl~~ss~~wv~ 55 (64)
+.||+|+||+.+++..|..
T Consensus 131 ~~~vl~~HG~~~~~~~~~~ 149 (371)
T PRK14875 131 GTPVVLIHGFGGDLNNWLF 149 (371)
T ss_pred CCeEEEECCCCCccchHHH
Confidence 3459999999999998864
No 47
>PRK13604 luxD acyl transferase; Provisional
Probab=85.15 E-value=1.7 Score=30.94 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCcceEEEEecCCCcEEEEEEecCC----CCcc-EEEecccccCcc
Q psy1426 11 NYPSEEHKILTEDGYILTVFRIPNP----GGYP-VLMLHGLTVSSD 51 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~l~Ri~~~----~~~p-VlL~HGl~~ss~ 51 (64)
.+....|.+.++||..|.-+-++++ ++++ |++.||+..+..
T Consensus 6 ~~~~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~ 51 (307)
T PRK13604 6 SFKTIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMD 51 (307)
T ss_pred cccchhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChH
Confidence 4556789999999999998888664 2445 899999998764
No 48
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=84.89 E-value=0.83 Score=31.91 Aligned_cols=18 Identities=39% Similarity=0.691 Sum_probs=15.5
Q ss_pred ccEEEecccccCccccee
Q psy1426 38 YPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 38 ~pVlL~HGl~~ss~~wv~ 55 (64)
.||+|+||+.+++..|-.
T Consensus 89 p~lvllHG~~~~~~~w~~ 106 (360)
T PLN02679 89 PPVLLVHGFGASIPHWRR 106 (360)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999864
No 49
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.46 E-value=4.4 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=26.9
Q ss_pred HHHHHhhcCCcceEEEEecC-CCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTE-DGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~-DGyiL~l~Ri~~~ 35 (64)
+...+..+|..+..-++.|- ||+.+..|.+..+
T Consensus 18 i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~ 51 (73)
T cd04900 18 IAGALDQLGLNILDARIFTTRDGYALDTFVVLDP 51 (73)
T ss_pred HHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC
Confidence 45678899999999887655 9999999999543
No 50
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=84.25 E-value=1 Score=31.75 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=21.8
Q ss_pred EecCCCcEEEE----EEecCC---CCcc-EEEecccccCcccc
Q psy1426 19 ILTEDGYILTV----FRIPNP---GGYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 19 v~T~DGyiL~l----~Ri~~~---~~~p-VlL~HGl~~ss~~w 53 (64)
+++++|-.+.= |+.... ..+| |+|+||+.+++..|
T Consensus 22 ~~~~~g~~~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~ 64 (379)
T PRK00175 22 LPLESGAVLPPVELAYETYGTLNADRSNAVLICHALTGDHHVA 64 (379)
T ss_pred eeccCCCCcCCceEEEEeccccCCCCCCEEEEeCCcCCchhhc
Confidence 34567776652 222221 1245 99999999999854
No 51
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=83.52 E-value=4.4 Score=29.01 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=17.2
Q ss_pred ecCCCCcc-EEEecccccCccccee
Q psy1426 32 IPNPGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 32 i~~~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
++..+.+| |+|+||...++..|..
T Consensus 99 ~~~~~~~p~vvllHG~~~~~~~~~~ 123 (402)
T PLN02894 99 FDSKEDAPTLVMVHGYGASQGFFFR 123 (402)
T ss_pred ecCCCCCCEEEEECCCCcchhHHHH
Confidence 34334445 9999999998887753
No 52
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=83.24 E-value=0.2 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=16.0
Q ss_pred ecCCCcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 20 LTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 20 ~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
+|+|||+..-..|-......+..-|| +...|+.
T Consensus 2 ~t~DGyvFdp~dI~~~~~~gy~vpHg---dH~HyI~ 34 (53)
T PF04270_consen 2 TTSDGYVFDPADIISETGDGYVVPHG---DHFHYIP 34 (53)
T ss_dssp B-TTS-B--GGG--EE-SSEEEEEET---TEEEEEE
T ss_pred cCCCCceeCHHHccccCCCeEEeeCC---CcccCCc
Confidence 68999987755554433334777786 4445544
No 53
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=83.19 E-value=3.4 Score=35.07 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=26.7
Q ss_pred cCCcceEEEEec-CCCcEEEEEEecCC--C-CccEEEecccccCccccee
Q psy1426 10 WNYPSEEHKILT-EDGYILTVFRIPNP--G-GYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 10 ~gy~~e~h~v~T-~DGyiL~l~Ri~~~--~-~~pVlL~HGl~~ss~~wv~ 55 (64)
-|-.+..+.+.. .||....++--..+ . +.||+|+||+.+++..|..
T Consensus 1340 ~~~~l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~w~~ 1389 (1655)
T PLN02980 1340 KEEQVRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDWIP 1389 (1655)
T ss_pred ccCCCceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCHHHHHH
Confidence 345555555554 35533333221222 2 3349999999999999853
No 54
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.15 E-value=4.4 Score=22.84 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=25.5
Q ss_pred HHHHHhhcCCcceEEE-EecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHK-ILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~-v~T~DGyiL~l~Ri~~~ 35 (64)
+...+..+|..+-.-+ .+|.|||.|..|.+...
T Consensus 18 iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~ 51 (68)
T cd04928 18 LSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW 51 (68)
T ss_pred HHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC
Confidence 3556788899987744 45889999999999543
No 55
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=82.99 E-value=1.6 Score=30.15 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=26.9
Q ss_pred eEEEEecCCCcEEEEEEecCC---CCccEEEecccccCcccceecCCCCCC
Q psy1426 15 EEHKILTEDGYILTVFRIPNP---GGYPVLMLHGLTVSSDCWFLRTPKEDL 62 (64)
Q Consensus 15 e~h~v~T~DGyiL~l~Ri~~~---~~~pVlL~HGl~~ss~~wv~~gp~~SL 62 (64)
+...|-..+++.|--|+ |.. .+.|||++||+..++..|... +.+|+
T Consensus 38 ~~~~v~~~~~~~l~~~~-~~~~~~~~~pvl~v~~~~~~~~~~d~~-~~~~~ 86 (350)
T TIGR01836 38 PKEVVYREDKVVLYRYT-PVKDNTHKTPLLIVYALVNRPYMLDLQ-EDRSL 86 (350)
T ss_pred CCceEEEcCcEEEEEec-CCCCcCCCCcEEEeccccccceeccCC-CCchH
Confidence 34445556666555554 321 245799999998776555443 35554
No 56
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.93 E-value=5.9 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+...+..+|..+..-.+.|.+++.+..+|+...
T Consensus 18 i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~ 50 (72)
T cd04926 18 VTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA 50 (72)
T ss_pred HHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC
Confidence 456788999999888888999999999999543
No 57
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=82.66 E-value=2.7 Score=30.33 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=26.9
Q ss_pred ceEEEEecCCCcEEEEEEe-c-CCCCcc-EEEecccccCcccce
Q psy1426 14 SEEHKILTEDGYILTVFRI-P-NPGGYP-VLMLHGLTVSSDCWF 54 (64)
Q Consensus 14 ~e~h~v~T~DGyiL~l~Ri-~-~~~~~p-VlL~HGl~~ss~~wv 54 (64)
.++-.+...||..|-...- | .+..+| |+++||+.+++..|.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~ 153 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYL 153 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHH
Confidence 4555666777776654433 2 233455 999999998877663
No 58
>KOG2382|consensus
Probab=82.47 E-value=1.2 Score=31.97 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=16.9
Q ss_pred Ccc-EEEecccccCcccceec
Q psy1426 37 GYP-VLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~wv~~ 56 (64)
+.| ++++|||+.|..+|-.-
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv 71 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSV 71 (315)
T ss_pred CCCceEEecccccCCCCHHHH
Confidence 445 99999999999999754
No 59
>PRK10115 protease 2; Provisional
Probab=82.42 E-value=1.7 Score=33.60 Aligned_cols=43 Identities=28% Similarity=0.200 Sum_probs=32.2
Q ss_pred cCCcceEEEEecCCCcEEEEEEe--cC---CCCcc-EEEecccccCccc
Q psy1426 10 WNYPSEEHKILTEDGYILTVFRI--PN---PGGYP-VLMLHGLTVSSDC 52 (64)
Q Consensus 10 ~gy~~e~h~v~T~DGyiL~l~Ri--~~---~~~~p-VlL~HGl~~ss~~ 52 (64)
..|.+|...+++.||..+-+.-+ |. .+++| +|+.||-...+..
T Consensus 412 ~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~ 460 (686)
T PRK10115 412 ANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASID 460 (686)
T ss_pred cccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCC
Confidence 47799999999999999886444 22 23458 8899997777753
No 60
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=82.28 E-value=2 Score=32.15 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=14.3
Q ss_pred cEEEecccccCcccce
Q psy1426 39 PVLMLHGLTVSSDCWF 54 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv 54 (64)
||+|+||+..++..|-
T Consensus 203 ~VVLlHG~~~s~~~W~ 218 (481)
T PLN03087 203 DVLFIHGFISSSAFWT 218 (481)
T ss_pred eEEEECCCCccHHHHH
Confidence 4999999999998885
No 61
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=81.09 E-value=2.9 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=22.4
Q ss_pred HHHHhhcCCcceEE-EEecCCCcEEEEEEec
Q psy1426 4 DDMIRFWNYPSEEH-KILTEDGYILTVFRIP 33 (64)
Q Consensus 4 ~~~i~~~gy~~e~h-~v~T~DGyiL~l~Ri~ 33 (64)
..|++++-=.+|.+ .|.|.|||.|.++=|-
T Consensus 86 rSlVrk~~S~Ie~~vdvkTkDGy~lRv~~i~ 116 (203)
T PRK04057 86 RSLVRRRTSKIDAIVDVTTKDGYKVRVKPVA 116 (203)
T ss_pred HhHhccCceeEEEEEEEEcCCCCEEEEEEEE
Confidence 44677776666655 5789999999988763
No 62
>PRK10566 esterase; Provisional
Probab=81.01 E-value=2.2 Score=27.45 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=17.1
Q ss_pred EEEecCC---CCcc-EEEecccccCcccce
Q psy1426 29 VFRIPNP---GGYP-VLMLHGLTVSSDCWF 54 (64)
Q Consensus 29 l~Ri~~~---~~~p-VlL~HGl~~ss~~wv 54 (64)
++.+|.+ ++.| |++.||...++..|.
T Consensus 15 ~~~~p~~~~~~~~p~vv~~HG~~~~~~~~~ 44 (249)
T PRK10566 15 LHAFPAGQRDTPLPTVFFYHGFTSSKLVYS 44 (249)
T ss_pred EEEcCCCCCCCCCCEEEEeCCCCcccchHH
Confidence 4444543 2357 999999988876553
No 63
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=80.66 E-value=1 Score=35.81 Aligned_cols=38 Identities=26% Similarity=0.515 Sum_probs=28.1
Q ss_pred EEecCCCcEEEEEEecCC--------CCcc-EEEecccccCccccee
Q psy1426 18 KILTEDGYILTVFRIPNP--------GGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 18 ~v~T~DGyiL~l~Ri~~~--------~~~p-VlL~HGl~~ss~~wv~ 55 (64)
.+.+.||+.+...|.-.+ .++| |+++||+..+...|..
T Consensus 421 ~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~ 467 (792)
T TIGR03502 421 LLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALA 467 (792)
T ss_pred EEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHH
Confidence 677889988876663211 2356 9999999999998854
No 64
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=80.08 E-value=1.2 Score=30.12 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=11.1
Q ss_pred CccEEEecccccC-ccccee
Q psy1426 37 GYPVLMLHGLTVS-SDCWFL 55 (64)
Q Consensus 37 ~~pVlL~HGl~~s-s~~wv~ 55 (64)
++||+|+||...+ ...|-.
T Consensus 1 ~~PVVlVHG~~~~~~~~w~~ 20 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYSNWST 20 (219)
T ss_dssp S--EEEE--TTTTTCGGCCH
T ss_pred CCCEEEECCCCcchhhCHHH
Confidence 4699999999994 457754
No 65
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=80.04 E-value=1.3 Score=26.58 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=12.7
Q ss_pred EEEecccccCccccee
Q psy1426 40 VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 40 VlL~HGl~~ss~~wv~ 55 (64)
|+|+||+..++..|..
T Consensus 1 vv~~hG~~~~~~~~~~ 16 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDP 16 (228)
T ss_dssp EEEE-STTTTGGGGHH
T ss_pred eEEECCCCCCHHHHHH
Confidence 7899999999988853
No 66
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=80.02 E-value=2.4 Score=29.43 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=31.5
Q ss_pred cceEEEEecCCCcEEEEEEecCCCCc-c-EEEecccccCcccc
Q psy1426 13 PSEEHKILTEDGYILTVFRIPNPGGY-P-VLMLHGLTVSSDCW 53 (64)
Q Consensus 13 ~~e~h~v~T~DGyiL~l~Ri~~~~~~-p-VlL~HGl~~ss~~w 53 (64)
...+....+.||-.+.+++....... . |++.||+...+..|
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry 50 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRY 50 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHH
Confidence 34566778889999999888665332 4 99999999988754
No 67
>KOG4409|consensus
Probab=79.33 E-value=2.7 Score=30.88 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHhhcCCcceEEEEecCCCcEEEEEEecC--CCCccEEEecccccCcccceecCCC
Q psy1426 6 MIRFWNYPSEEHKILTEDGYILTVFRIPN--PGGYPVLMLHGLTVSSDCWFLRTPK 59 (64)
Q Consensus 6 ~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~--~~~~pVlL~HGl~~ss~~wv~~gp~ 59 (64)
+.+..+-+.+.-.|...++=..-...... ..++|++|+||+.++...|+.|-++
T Consensus 57 il~~~~v~~~~~~v~i~~~~~iw~~~~~~~~~~~~plVliHGyGAg~g~f~~Nf~~ 112 (365)
T KOG4409|consen 57 ILSSVPVPYSKKYVRIPNGIEIWTITVSNESANKTPLVLIHGYGAGLGLFFRNFDD 112 (365)
T ss_pred hhhhcCCCcceeeeecCCCceeEEEeecccccCCCcEEEEeccchhHHHHHHhhhh
Confidence 44555556666666655443322222221 1256799999999999999998654
No 68
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.94 E-value=7.9 Score=21.31 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPN 34 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~ 34 (64)
+...+..+|..+..-++.|.||+.+.++.+..
T Consensus 17 i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 17 VFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred HHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 56788999999999999999999999999854
No 69
>KOG1838|consensus
Probab=76.43 E-value=7.3 Score=29.02 Aligned_cols=40 Identities=38% Similarity=0.452 Sum_probs=31.7
Q ss_pred CcceEEEEecCCCcEEEEEEecCC--------CCcc-EEEecccccCcc
Q psy1426 12 YPSEEHKILTEDGYILTVFRIPNP--------GGYP-VLMLHGLTVSSD 51 (64)
Q Consensus 12 y~~e~h~v~T~DGyiL~l~Ri~~~--------~~~p-VlL~HGl~~ss~ 51 (64)
...+.--++|+||=.+++-..... ..+| |+++||+-.+|.
T Consensus 91 ~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~ 139 (409)
T KOG1838|consen 91 VEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH 139 (409)
T ss_pred CcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh
Confidence 445667789999999999998432 2458 999999998886
No 70
>PLN00021 chlorophyllase
Probab=75.69 E-value=5.8 Score=27.80 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCcceEEEEecC----CCcEEEEEEecCCCCcc-EEEecccccCcccc
Q psy1426 11 NYPSEEHKILTE----DGYILTVFRIPNPGGYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 11 gy~~e~h~v~T~----DGyiL~l~Ri~~~~~~p-VlL~HGl~~ss~~w 53 (64)
-|+++.-.|... -+..+.+++=...++.| |++.||...+...|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~p~~v~~P~~~g~~PvVv~lHG~~~~~~~y 68 (313)
T PLN00021 21 KFPVELITVDESSRPSPPKPLLVATPSEAGTYPVLLFLHGYLLYNSFY 68 (313)
T ss_pred CceeEEEEecCCCcCCCCceEEEEeCCCCCCCCEEEEECCCCCCcccH
Confidence 366666666642 45666666632334557 89999999887655
No 71
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=75.37 E-value=3.8 Score=27.36 Aligned_cols=28 Identities=39% Similarity=0.748 Sum_probs=18.5
Q ss_pred HHHhhcCCcceE-EEEecCCCcEEEEEEe
Q psy1426 5 DMIRFWNYPSEE-HKILTEDGYILTVFRI 32 (64)
Q Consensus 5 ~~i~~~gy~~e~-h~v~T~DGyiL~l~Ri 32 (64)
.|++++-=.+|. ..|.|.|||.|.++=+
T Consensus 93 Slvrk~~s~Ie~~~dvkT~DGy~lRvf~i 121 (194)
T PF01015_consen 93 SLVRKWQSRIEAIVDVKTKDGYLLRVFCI 121 (194)
T ss_dssp HC--TTC-EEEEEEEEEETTTEEEEEEEE
T ss_pred cceeecceEEEEEEEEEcCCCcEEEEEEE
Confidence 455666555654 4678999999988776
No 72
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=74.70 E-value=1.2 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=8.6
Q ss_pred Ccc-EEEecccccCcccc
Q psy1426 37 GYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~w 53 (64)
+|+ ||.+||..+|++.+
T Consensus 3 ~k~riLcLHG~~~na~if 20 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIF 20 (212)
T ss_dssp ---EEEEE--TT--HHHH
T ss_pred CCceEEEeCCCCcCHHHH
Confidence 356 99999999998765
No 73
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=74.55 E-value=1.5 Score=28.95 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.5
Q ss_pred EEEecccccCcccce
Q psy1426 40 VLMLHGLTVSSDCWF 54 (64)
Q Consensus 40 VlL~HGl~~ss~~wv 54 (64)
|+++|||.++..+|-
T Consensus 7 vV~vHGL~G~~~d~~ 21 (217)
T PF05057_consen 7 VVFVHGLWGNPADMR 21 (217)
T ss_pred EEEeCCCCCCHHHHH
Confidence 899999999998884
No 74
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=73.91 E-value=6.1 Score=26.50 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=16.0
Q ss_pred Ccc-EEEecccccCccccee
Q psy1426 37 GYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~wv~ 55 (64)
+.| |+|.||..++.+.|..
T Consensus 41 ~~P~vvllHG~~~~~~~~~~ 60 (275)
T TIGR02821 41 PVPVLWYLSGLTCTHENFMI 60 (275)
T ss_pred CCCEEEEccCCCCCccHHHh
Confidence 467 8999999999998853
No 75
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=72.33 E-value=3.6 Score=28.24 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=20.6
Q ss_pred HHHhhcCCcce-EEEEecCCCcEEEEEEe
Q psy1426 5 DMIRFWNYPSE-EHKILTEDGYILTVFRI 32 (64)
Q Consensus 5 ~~i~~~gy~~e-~h~v~T~DGyiL~l~Ri 32 (64)
.+++++--.++ ...|.|.|||++.++-+
T Consensus 95 slVRR~~SrIdai~dVkTkDGy~~RV~~~ 123 (214)
T COG1890 95 SLVRRRTSRIDAIVDVKTKDGYVLRVKAM 123 (214)
T ss_pred HHHhcccceeeeEEEEEecCCcEEEEEEE
Confidence 45666666664 45789999999988766
No 76
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=72.15 E-value=7.1 Score=26.85 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=13.7
Q ss_pred CCcEEEEEEecCCCCccEEEecccccCcc
Q psy1426 23 DGYILTVFRIPNPGGYPVLMLHGLTVSSD 51 (64)
Q Consensus 23 DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~ 51 (64)
+|..|... .....+.|++|+||.++++.
T Consensus 44 ~~~~l~y~-~~G~~~~p~vll~g~~~~~~ 71 (343)
T PRK08775 44 EDLRLRYE-LIGPAGAPVVFVAGGISAHR 71 (343)
T ss_pred CCceEEEE-EeccCCCCEEEEecCCCccc
Confidence 66665533 22223457555555555544
No 77
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.12 E-value=12 Score=19.54 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=28.0
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+...+..+|..+..-.+.|.+++.+.++.+...
T Consensus 17 i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 17 VTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred HHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 466788999999999999988899999998644
No 78
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=72.06 E-value=2.2 Score=28.48 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=13.8
Q ss_pred CccEEEecccccCcccc
Q psy1426 37 GYPVLMLHGLTVSSDCW 53 (64)
Q Consensus 37 ~~pVlL~HGl~~ss~~w 53 (64)
+.||+++||+..|...|
T Consensus 4 g~pVlFIhG~~Gs~~q~ 20 (225)
T PF07819_consen 4 GIPVLFIHGNAGSYKQV 20 (225)
T ss_pred CCEEEEECcCCCCHhHH
Confidence 56899999998887654
No 79
>KOG2551|consensus
Probab=71.41 E-value=2 Score=29.78 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.2
Q ss_pred Ccc-EEEecccccCcccc
Q psy1426 37 GYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~w 53 (64)
+++ ||++||+.+|...|
T Consensus 4 ~k~rvLcLHGfrQsg~~F 21 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVF 21 (230)
T ss_pred CCceEEEecchhhccHHH
Confidence 356 99999999998765
No 80
>PRK07868 acyl-CoA synthetase; Validated
Probab=69.92 E-value=6.3 Score=31.46 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=18.6
Q ss_pred ccEEEecccccCcccceecCCCCC
Q psy1426 38 YPVLMLHGLTVSSDCWFLRTPKED 61 (64)
Q Consensus 38 ~pVlL~HGl~~ss~~wv~~gp~~S 61 (64)
.||||+||+..++..|-... ++|
T Consensus 68 ~plllvhg~~~~~~~~d~~~-~~s 90 (994)
T PRK07868 68 PPVLMVHPMMMSADMWDVTR-DDG 90 (994)
T ss_pred CcEEEECCCCCCccceecCC-ccc
Confidence 46999999999999998763 444
No 81
>COG0400 Predicted esterase [General function prediction only]
Probab=68.82 E-value=4 Score=27.35 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.6
Q ss_pred CCcc-EEEecccccCccccee
Q psy1426 36 GGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 36 ~~~p-VlL~HGl~~ss~~wv~ 55 (64)
+..| |+|+||+..+..+++.
T Consensus 16 p~~~~iilLHG~Ggde~~~~~ 36 (207)
T COG0400 16 PAAPLLILLHGLGGDELDLVP 36 (207)
T ss_pred CCCcEEEEEecCCCChhhhhh
Confidence 3567 9999999988777665
No 82
>PLN02965 Probable pheophorbidase
Probab=68.62 E-value=3.1 Score=27.09 Aligned_cols=17 Identities=24% Similarity=0.786 Sum_probs=14.4
Q ss_pred cEEEecccccCccccee
Q psy1426 39 PVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv~ 55 (64)
.|+|+||+..++..|-.
T Consensus 5 ~vvllHG~~~~~~~w~~ 21 (255)
T PLN02965 5 HFVFVHGASHGAWCWYK 21 (255)
T ss_pred EEEEECCCCCCcCcHHH
Confidence 38999999999988854
No 83
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=66.64 E-value=3.7 Score=28.01 Aligned_cols=18 Identities=33% Similarity=0.842 Sum_probs=14.5
Q ss_pred Ccc-EEEecccccCc-ccce
Q psy1426 37 GYP-VLMLHGLTVSS-DCWF 54 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss-~~wv 54 (64)
.+| |+++||+.++. ..|.
T Consensus 35 ~~p~vilIHG~~~~~~~~~~ 54 (275)
T cd00707 35 SRPTRFIIHGWTSSGEESWI 54 (275)
T ss_pred CCCcEEEEcCCCCCCCCcHH
Confidence 456 99999999988 5775
No 84
>PLN02442 S-formylglutathione hydrolase
Probab=66.56 E-value=11 Score=25.65 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=16.6
Q ss_pred CCcc-EEEecccccCcccceec
Q psy1426 36 GGYP-VLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 36 ~~~p-VlL~HGl~~ss~~wv~~ 56 (64)
++.| |++.||..++.+.|...
T Consensus 45 ~~~Pvv~~lHG~~~~~~~~~~~ 66 (283)
T PLN02442 45 GKVPVLYWLSGLTCTDENFIQK 66 (283)
T ss_pred CCCCEEEEecCCCcChHHHHHh
Confidence 3678 88999999888888653
No 85
>KOG1455|consensus
Probab=66.56 E-value=14 Score=26.68 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=29.0
Q ss_pred hhcCCcceEEEEecCCC-cEEEEEEecCCCCcc---EEEecccccCc
Q psy1426 8 RFWNYPSEEHKILTEDG-YILTVFRIPNPGGYP---VLMLHGLTVSS 50 (64)
Q Consensus 8 ~~~gy~~e~h~v~T~DG-yiL~l~Ri~~~~~~p---VlL~HGl~~ss 50 (64)
...+-..++-.+++.+| ...+-...|....+| |++.||+...+
T Consensus 21 ~~~~~~~~~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~ 67 (313)
T KOG1455|consen 21 GDGGVTYSESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHS 67 (313)
T ss_pred CCCccceeeeeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccc
Confidence 33455566778889999 555566666443233 99999987765
No 86
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=66.24 E-value=12 Score=21.20 Aligned_cols=44 Identities=11% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCHHHHHhhcCCcceEEEEecCCCcEEEEEEecCCCCccEEEecccc
Q psy1426 1 MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLT 47 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~ 47 (64)
++..|+...|.=......|+|+||-.|. +|...-+|.+-+.|+-
T Consensus 7 is~~~~l~~Y~G~a~~V~v~s~~Gr~v~---~Pa~~lRpFvt~~Gv~ 50 (68)
T PF11197_consen 7 ISYQEFLAYYQGAASKVVVRSDDGRRVQ---FPARHLRPFVTHDGVH 50 (68)
T ss_pred cCHHHHHHhccccccEEEEEecCCcEEE---EeHHHCcceecCCCce
Confidence 3567788888888999999999999885 4655556766666653
No 87
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=65.56 E-value=9.4 Score=28.38 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.6
Q ss_pred EecCCCcEEEE--EEecCC-CCcc-EEEecccccCc
Q psy1426 19 ILTEDGYILTV--FRIPNP-GGYP-VLMLHGLTVSS 50 (64)
Q Consensus 19 v~T~DGyiL~l--~Ri~~~-~~~p-VlL~HGl~~ss 50 (64)
|++.||..|.. +| |.+ ++.| |++.||...++
T Consensus 1 i~~~DG~~L~~~~~~-P~~~~~~P~Il~~~gyg~~~ 35 (550)
T TIGR00976 1 VPMRDGTRLAIDVYR-PAGGGPVPVILSRTPYGKDA 35 (550)
T ss_pred CcCCCCCEEEEEEEe-cCCCCCCCEEEEecCCCCch
Confidence 57889998874 44 543 3567 88899998765
No 88
>PRK07581 hypothetical protein; Validated
Probab=65.39 E-value=12 Score=25.54 Aligned_cols=17 Identities=6% Similarity=-0.211 Sum_probs=12.0
Q ss_pred Ccc-EEEecccccCcccc
Q psy1426 37 GYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~w 53 (64)
+.| |||.||...++..|
T Consensus 40 ~~~~vll~~~~~~~~~~~ 57 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDN 57 (339)
T ss_pred CCCEEEEeCCCCCCcccc
Confidence 345 78888888776665
No 89
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=63.95 E-value=4.7 Score=28.51 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=6.8
Q ss_pred CccEEEecccccCc
Q psy1426 37 GYPVLMLHGLTVSS 50 (64)
Q Consensus 37 ~~pVlL~HGl~~ss 50 (64)
.+||++.|||.+++
T Consensus 5 ~~PvViwHGmGD~~ 18 (279)
T PF02089_consen 5 PLPVVIWHGMGDSC 18 (279)
T ss_dssp S--EEEE--TT--S
T ss_pred CCcEEEEEcCcccc
Confidence 57899999999875
No 90
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=63.70 E-value=9.8 Score=26.24 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=11.3
Q ss_pred cEEEecccccCcc
Q psy1426 39 PVLMLHGLTVSSD 51 (64)
Q Consensus 39 pVlL~HGl~~ss~ 51 (64)
+|+|.||+..|+.
T Consensus 33 ~vll~Hg~~~~~~ 45 (351)
T TIGR01392 33 AVLVCHALTGDAH 45 (351)
T ss_pred EEEEcCCcCcchh
Confidence 4999999999874
No 91
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=62.00 E-value=16 Score=22.20 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=16.5
Q ss_pred EEEecCCCcEEEEEEecCC--CCccEEEecccccCcc
Q psy1426 17 HKILTEDGYILTVFRIPNP--GGYPVLMLHGLTVSSD 51 (64)
Q Consensus 17 h~v~T~DGyiL~l~Ri~~~--~~~pVlL~HGl~~ss~ 51 (64)
|..++=||-.+-.-++.++ +..|+||.||-=+|--
T Consensus 70 hf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf~ 106 (112)
T PF06441_consen 70 HFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSFL 106 (112)
T ss_dssp EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--GG
T ss_pred CeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccHH
Confidence 4444446666655554433 2457999999765543
No 92
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=61.97 E-value=7 Score=26.37 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=15.3
Q ss_pred Ccc-EEEecccccCccccee
Q psy1426 37 GYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss~~wv~ 55 (64)
+.| |+++||-.++++.+..
T Consensus 15 ~~PLVv~LHG~~~~a~~~~~ 34 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAEDFAA 34 (220)
T ss_pred CCCEEEEeCCCCCCHHHHHh
Confidence 458 9999999999887654
No 93
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=61.96 E-value=43 Score=22.48 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHhhcCCcceEEEEe-cCCCcEEEEEEecCC-----CCcc-EEEe
Q psy1426 4 DDMIRFWNYPSEEHKIL-TEDGYILTVFRIPNP-----GGYP-VLML 43 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~-T~DGyiL~l~Ri~~~-----~~~p-VlL~ 43 (64)
.++.+++.--++...+. |..|..|-+.+|... ..|| |++.
T Consensus 6 ~~l~~~~p~~v~~~~iG~S~~Gr~i~~~~i~~~~~~~~~~k~~v~i~ 52 (279)
T PF00246_consen 6 DALAARYPDIVRLESIGKSYEGRPIYALTIGSNSNGSDPGKPTVLII 52 (279)
T ss_dssp HHHHHHSTTTEEEEEEEE-TTS-EEEEEEESSSTTTTSTTSEEEEEE
T ss_pred HHHHHHCCCcEEEEEeeECCCCCeEEEEEeecccccccccccceEEE
Confidence 34556666556666555 889999999999764 4678 7773
No 94
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=61.79 E-value=4.5 Score=25.91 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.1
Q ss_pred CCcc-EEEecccccCcccce
Q psy1426 36 GGYP-VLMLHGLTVSSDCWF 54 (64)
Q Consensus 36 ~~~p-VlL~HGl~~ss~~wv 54 (64)
+++| |+++||...++..|.
T Consensus 11 ~~~P~vv~lHG~~~~~~~~~ 30 (212)
T TIGR01840 11 GPRALVLALHGCGQTASAYV 30 (212)
T ss_pred CCCCEEEEeCCCCCCHHHHh
Confidence 3568 999999998877664
No 95
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=59.78 E-value=21 Score=27.17 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=30.8
Q ss_pred HhhcCCcceEEEEecCCCcEEEE-EEecCCC----Ccc-EEEecccccCccc
Q psy1426 7 IRFWNYPSEEHKILTEDGYILTV-FRIPNPG----GYP-VLMLHGLTVSSDC 52 (64)
Q Consensus 7 i~~~gy~~e~h~v~T~DGyiL~l-~Ri~~~~----~~p-VlL~HGl~~ss~~ 52 (64)
.+...++.|...+.+.||=.+.- ...|.+. +.| |++.||==.++..
T Consensus 358 ~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~ 409 (620)
T COG1506 358 KKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVG 409 (620)
T ss_pred cccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccc
Confidence 34567788999999999966653 3445442 238 9999996444333
No 96
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.44 E-value=30 Score=19.50 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+.+....+|..+..-+|.|..+.....|-+...
T Consensus 18 i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~ 50 (72)
T cd04895 18 AVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ 50 (72)
T ss_pred HHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC
Confidence 567888999999999999999999999999644
No 97
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=58.82 E-value=5.3 Score=23.13 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.9
Q ss_pred cEEEecccccCcccce
Q psy1426 39 PVLMLHGLTVSSDCWF 54 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv 54 (64)
||++.||...+...|.
T Consensus 1 ~vv~~HG~~~~~~~~~ 16 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQ 16 (145)
T ss_dssp EEEEECTTTTTTHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4889999999877653
No 98
>COG1647 Esterase/lipase [General function prediction only]
Probab=58.09 E-value=6.4 Score=27.53 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.2
Q ss_pred CccEEEecccccCccc
Q psy1426 37 GYPVLMLHGLTVSSDC 52 (64)
Q Consensus 37 ~~pVlL~HGl~~ss~~ 52 (64)
++.|||+||+..++.+
T Consensus 15 ~~AVLllHGFTGt~~D 30 (243)
T COG1647 15 NRAVLLLHGFTGTPRD 30 (243)
T ss_pred CEEEEEEeccCCCcHH
Confidence 4569999999998864
No 99
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=57.61 E-value=6.2 Score=23.43 Aligned_cols=17 Identities=41% Similarity=0.843 Sum_probs=15.5
Q ss_pred cEEEecccccCccccee
Q psy1426 39 PVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 39 pVlL~HGl~~ss~~wv~ 55 (64)
++++.||...++..|..
T Consensus 23 ~i~~~hg~~~~~~~~~~ 39 (282)
T COG0596 23 PLVLLHGFPGSSSVWRP 39 (282)
T ss_pred eEEEeCCCCCchhhhHH
Confidence 69999999999998876
No 100
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.17 E-value=33 Score=19.62 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=27.2
Q ss_pred HHHHhhcCCcc-eEEEEecCC-CcEEEEEEe---cCCCCccEEEe
Q psy1426 4 DDMIRFWNYPS-EEHKILTED-GYILTVFRI---PNPGGYPVLML 43 (64)
Q Consensus 4 ~~~i~~~gy~~-e~h~v~T~D-GyiL~l~Ri---~~~~~~pVlL~ 43 (64)
.+-.+++||++ ..|...+.| ++.+.||-+ |....+.||-+
T Consensus 5 ~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~i 49 (69)
T smart00596 5 EEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILNI 49 (69)
T ss_pred HHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEee
Confidence 45567899998 677778888 788888877 33334445533
No 101
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=55.93 E-value=23 Score=18.94 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=17.9
Q ss_pred CHHHHHhhcCCcceEEEEecCCCcEEEE
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDGYILTV 29 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DGyiL~l 29 (64)
++..+++..||.+.+..- ..+.|.+.+
T Consensus 42 di~~~~~~~g~~~~~~~~-~~~~~~i~I 68 (70)
T PF01206_consen 42 DIPRWCEENGYEVVEVEE-EGGEYRILI 68 (70)
T ss_dssp HHHHHHHHHTEEEEEEEE-SSSSEEEEE
T ss_pred HHHHHHHHCCCEEEEEEE-eCCEEEEEE
Confidence 467789999998655544 555555544
No 102
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=55.89 E-value=17 Score=19.45 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=16.4
Q ss_pred CHHHHHhhcCCcceEEEEecCCCcEEE
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDGYILT 28 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DGyiL~ 28 (64)
++..+++..||.++... .++.|.+.
T Consensus 40 ~i~~~~~~~G~~~~~~~--~~~~~~i~ 64 (67)
T cd03421 40 NVSRFAESRGYEVSVEE--KGGEFEIT 64 (67)
T ss_pred HHHHHHHHcCCEEEEEe--cCCEEEEE
Confidence 46778999999995443 23345443
No 103
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=53.93 E-value=33 Score=24.00 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=33.1
Q ss_pred HhhcCCcceEEEEecCCCcEEEEEEecCCC-Ccc-EEEecccccCcc
Q psy1426 7 IRFWNYPSEEHKILTEDGYILTVFRIPNPG-GYP-VLMLHGLTVSSD 51 (64)
Q Consensus 7 i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~-~~p-VlL~HGl~~ss~ 51 (64)
++++=-.-|...++..|.=.|.|+|=...+ .+. |+++||...+.+
T Consensus 55 l~~~lp~~e~~~L~~~~~~flaL~~~~~~~~~~G~vIilp~~g~~~d 101 (310)
T PF12048_consen 55 LERYLPADEVQWLQAGEERFLALWRPANSAKPQGAVIILPDWGEHPD 101 (310)
T ss_pred HHhhCCHhhcEEeecCCEEEEEEEecccCCCCceEEEEecCCCCCCC
Confidence 344444478888889999999999954333 234 999999988875
No 104
>KOG3551|consensus
Probab=53.09 E-value=12 Score=28.32 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=28.2
Q ss_pred cCCcceEEEEecCCCcEEEEEEec--CC--------CCcc-EEEecccccCc
Q psy1426 10 WNYPSEEHKILTEDGYILTVFRIP--NP--------GGYP-VLMLHGLTVSS 50 (64)
Q Consensus 10 ~gy~~e~h~v~T~DGyiL~l~Ri~--~~--------~~~p-VlL~HGl~~ss 50 (64)
+-|++|..+...+||-.+----+- .+ ..|| ||.+|-+++.-
T Consensus 447 ~q~pFEkLkmSsDDG~r~LyLDFGg~dGEiqLDLhscpKpiVFIlHsfLSAK 498 (506)
T KOG3551|consen 447 WQHPFEKLKMSSDDGARMLYLDFGGPDGEIQLDLHSCPKPIVFILHSFLSAK 498 (506)
T ss_pred hhChHHHhccccCCCceEEEEecCCCCccEEeeeccCCCcEEEEehhhhhhh
Confidence 567889999999998654322221 11 2689 99999998754
No 105
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=52.49 E-value=34 Score=23.30 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=28.5
Q ss_pred CCcceEEEEecCCCcEEE---EEEecCCC----------------Ccc-EEEeccc--ccCcccceecC
Q psy1426 11 NYPSEEHKILTEDGYILT---VFRIPNPG----------------GYP-VLMLHGL--TVSSDCWFLRT 57 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~---l~Ri~~~~----------------~~p-VlL~HGl--~~ss~~wv~~g 57 (64)
-|+|+.|.+.+++|= |. .+||+.+. ..| +|.-|+- |-.-++|-..+
T Consensus 55 ~FdCQ~h~F~~~~~k-l~~~~~wRi~~pdggf~~r~~~q~fvqD~~~Pg~lyn~dneyL~yqddWyIl~ 122 (198)
T PF07137_consen 55 TFDCQLHEFHTEKDK-LVGKINWRIPTPDGGFFTRSAVQRFVQDPSQPGILYNHDNEYLHYQDDWYILG 122 (198)
T ss_dssp TTSEEEEEEEEETTE-EEEEEEEEEE-TTS-EEEEEEEEEEEE-SS-TTEEEE---GGG-EEEEEEEEE
T ss_pred ccccccceeecCCCe-EEEEEEEEeecCCCCceeccceeEeeeCCCCCceEEecCCeeEEeeeeEEEEe
Confidence 479999999998883 33 57886541 356 8888853 45556776654
No 106
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=52.01 E-value=20 Score=25.47 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=23.5
Q ss_pred HHHHhhcCCc--ceEEEEecCCCcEEEEEEe
Q psy1426 4 DDMIRFWNYP--SEEHKILTEDGYILTVFRI 32 (64)
Q Consensus 4 ~~~i~~~gy~--~e~h~v~T~DGyiL~l~Ri 32 (64)
.++.+.-+|| -+.+.|.|+||+++....=
T Consensus 225 ~~i~~~~~fP~~~~~f~~itddG~~~~~~~~ 255 (296)
T PF09565_consen 225 KEIHRNPFFPQKKKPFTVITDDGWIFEAKVC 255 (296)
T ss_pred HHHhcCCCCCCCCCceEEEcCCCcEEEEEec
Confidence 3466778899 7889999999999988553
No 107
>TIGR01363 strep_his_triad streptococcal histidine triad protein. This model represents the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Three repeats are found in the seed alignment. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice.
Probab=51.35 E-value=16 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHh-hcCCcceEEEEecCCCcEEEEEEecCCCCccEEEecc
Q psy1426 3 TDDMIR-FWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45 (64)
Q Consensus 3 ~~~~i~-~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HG 45 (64)
+..+.+ .+|-|... +..|+|||+..--.|.......++.-||
T Consensus 287 i~~llkqLy~kPls~-r~~tsDGyvFdpa~I~s~ta~G~vVpHG 329 (348)
T TIGR01363 287 IKSLLDQLYRLPLSY-RHVESDGLIFDPAQITSRTARGVAVPHG 329 (348)
T ss_pred HHHHHHHHhcCCccc-cccCCCceeEChhhcccccCCeEEeecC
Confidence 334433 37777776 7779999999877776555555777777
No 108
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=50.51 E-value=28 Score=24.55 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCcceEEEEecCCCcEEE-EEEecC-C-CCcc-EEEecccccCcccc
Q psy1426 11 NYPSEEHKILTEDGYILT-VFRIPN-P-GGYP-VLMLHGLTVSSDCW 53 (64)
Q Consensus 11 gy~~e~h~v~T~DGyiL~-l~Ri~~-~-~~~p-VlL~HGl~~ss~~w 53 (64)
+..+....+++.||..+. -+-+|. . ++.| |+..||-..++..|
T Consensus 53 ~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~~ 99 (320)
T PF05448_consen 53 GVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGDP 99 (320)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGGH
T ss_pred CEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCCc
Confidence 445556666677777776 334466 2 3567 78889998887655
No 109
>PF04602 Arabinose_trans: Mycobacterial cell wall arabinan synthesis protein; InterPro: IPR007680 Arabinosyltransferase is involved in arabinogalactan (AG) biosynthesis pathway in mycobacteria. AG is a component of the macromolecular assembly of the mycolyl-AG-peptidoglycan complex of the cell wall. This enzyme has important clinical applications as it is believed to be the target of the antimycobacterial drug Ethambutol [].; GO: 0016763 transferase activity, transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0016021 integral to membrane; PDB: 3BYW_A.
Probab=50.41 E-value=5.2 Score=31.48 Aligned_cols=16 Identities=44% Similarity=0.827 Sum_probs=0.0
Q ss_pred ecCCCcEEEEEEecCC
Q psy1426 20 LTEDGYILTVFRIPNP 35 (64)
Q Consensus 20 ~T~DGyiL~l~Ri~~~ 35 (64)
+.+|||+|+|-|....
T Consensus 263 TsDDGYiltmaR~a~~ 278 (656)
T PF04602_consen 263 TSDDGYILTMARVAEH 278 (656)
T ss_dssp ----------------
T ss_pred CCCcceeeEEEeecCc
Confidence 5789999999998644
No 110
>PF10681 Rot1: Chaperone for protein-folding within the ER, fungal; InterPro: IPR019623 This conserved fungal family is an essential molecular chaperone in the endoplasmic reticulum. Molecular chaperones transiently interact with unfolded proteins to inhibit their self-aggregation and to support their folding and/or assembly. Rot1 is a general chaperone with some substrate specificity, its substrates being the structurally unrelated Kre5 Kre6 Big1 Atg22, which are type I, type II, and polytopic membrane proteins. The dependencies of each for Rot1 do not share similarities. However, their folding does require BiP, and one of these proteins was simultaneously associated with both Rot1 and BiP. In addition, Rot1 may cooperate with BiP/Kar2 in the folding of Kre6 [].
Probab=49.50 E-value=28 Score=23.92 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=17.4
Q ss_pred cCCCcE-EEEEEecCCCC-----cc-EEEeccc
Q psy1426 21 TEDGYI-LTVFRIPNPGG-----YP-VLMLHGL 46 (64)
Q Consensus 21 T~DGyi-L~l~Ri~~~~~-----~p-VlL~HGl 46 (64)
|+|||- -+.||.-..+. +. +..|||-
T Consensus 39 T~DG~~EeA~Yr~~~Np~~p~C~~a~l~wQHGt 71 (212)
T PF10681_consen 39 TEDGYFEEAQYRVTSNPTNPSCPTAVLIWQHGT 71 (212)
T ss_pred cCCCeeeEEEEEEccCCCCCCCCceEEEEecce
Confidence 778864 55889865432 23 6799994
No 111
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=47.69 E-value=23 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=15.7
Q ss_pred EEEecCCCcEEEEEEecCCCCcc-EEEeccc
Q psy1426 17 HKILTEDGYILTVFRIPNPGGYP-VLMLHGL 46 (64)
Q Consensus 17 h~v~T~DGyiL~l~Ri~~~~~~p-VlL~HGl 46 (64)
..|.+.+|| ...++.| |+|+||.
T Consensus 10 ~~VylP~~y-------~~~~~~PvlylldG~ 33 (251)
T PF00756_consen 10 VWVYLPPGY-------DPSKPYPVLYLLDGQ 33 (251)
T ss_dssp EEEEECTTG-------GTTTTEEEEEEESHT
T ss_pred EEEEECCCC-------CCCCCCEEEEEccCC
Confidence 445566666 4445678 8899997
No 112
>KOG2564|consensus
Probab=47.63 E-value=24 Score=25.74 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEEe-cCCCCcc-EEEecccccCccccee
Q psy1426 27 LTVFRI-PNPGGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 27 L~l~Ri-~~~~~~p-VlL~HGl~~ss~~wv~ 55 (64)
...|+- |..+..| .+|+||-..|+-+|-.
T Consensus 62 ~n~Y~t~~~~t~gpil~l~HG~G~S~LSfA~ 92 (343)
T KOG2564|consen 62 FNVYLTLPSATEGPILLLLHGGGSSALSFAI 92 (343)
T ss_pred EEEEEecCCCCCccEEEEeecCcccchhHHH
Confidence 334442 3334567 6789999999888853
No 113
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=47.35 E-value=27 Score=25.09 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=19.8
Q ss_pred ecCCCcEEEEEEecCC----CCcc-EEEecc
Q psy1426 20 LTEDGYILTVFRIPNP----GGYP-VLMLHG 45 (64)
Q Consensus 20 ~T~DGyiL~l~Ri~~~----~~~p-VlL~HG 45 (64)
.+||--.|.+++ |.. ++.| ++++||
T Consensus 74 ~sEdcl~l~i~~-p~~~~~~~~~pv~v~ihG 103 (493)
T cd00312 74 GSEDCLYLNVYT-PKNTKPGNSLPVMVWIHG 103 (493)
T ss_pred CCCcCCeEEEEe-CCCCCCCCCCCEEEEEcC
Confidence 589999999999 542 3568 789999
No 114
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=47.19 E-value=31 Score=22.05 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEE-EEecCCCCccEEEecc
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTV-FRIPNPGGYPVLMLHG 45 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l-~Ri~~~~~~pVlL~HG 45 (64)
.+.+++.||.+|..++....|+.++- +++. ...||++..|
T Consensus 155 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~npv~~~~~ 195 (198)
T PRK00377 155 LSALENIGFNLEITEVIIAKGMKTKVGTAMM--TRNPIFIISG 195 (198)
T ss_pred HHHHHHcCCCeEEEEEehhhcccccCCcEee--cCCCEEEEEE
Confidence 45678899999999999888886653 3332 2368888765
No 115
>PRK03381 PII uridylyl-transferase; Provisional
Probab=46.80 E-value=50 Score=26.14 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=29.0
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+...+...|..+..-++.|.||+.+.++.+...
T Consensus 616 i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~ 648 (774)
T PRK03381 616 AAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR 648 (774)
T ss_pred HHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 456788999999999999999999999999653
No 116
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=46.54 E-value=33 Score=18.66 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=18.0
Q ss_pred CHHHHHhhcCCcceEEEEecCCCcEEEE
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDGYILTV 29 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DGyiL~l 29 (64)
|++.+++..||.+....- +.+.|.+.+
T Consensus 41 ni~~~~~~~g~~v~~~~~-~~~~~~~~i 67 (69)
T cd03422 41 NIPIDARNHGYKVLAIEQ-SGPTIRYLI 67 (69)
T ss_pred HHHHHHHHcCCEEEEEEe-cCCEEEEEE
Confidence 467899999999976442 334555544
No 117
>PF14090 HTH_39: Helix-turn-helix domain
Probab=45.80 E-value=49 Score=18.09 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=13.8
Q ss_pred HhhcCCcceEEEEe--cCCCc
Q psy1426 7 IRFWNYPSEEHKIL--TEDGY 25 (64)
Q Consensus 7 i~~~gy~~e~h~v~--T~DGy 25 (64)
++..||+++++.+. |++|-
T Consensus 37 LR~~G~~I~t~~~~~~~~~g~ 57 (70)
T PF14090_consen 37 LRKKGYPIVTEWVTVPTEDGR 57 (70)
T ss_pred HHHcCCeeeEEEEEeeccCCC
Confidence 46889999888754 55665
No 118
>COG4099 Predicted peptidase [General function prediction only]
Probab=45.31 E-value=32 Score=25.44 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=12.0
Q ss_pred Cc-c-EEEecccccCcc
Q psy1426 37 GY-P-VLMLHGLTVSSD 51 (64)
Q Consensus 37 ~~-p-VlL~HGl~~ss~ 51 (64)
+. | |+++||-.+.+.
T Consensus 189 ky~PLvlfLHgagq~g~ 205 (387)
T COG4099 189 KYYPLVLFLHGAGQGGS 205 (387)
T ss_pred ccccEEEEEecCCCCCc
Confidence 44 9 999999887665
No 119
>KOG2110|consensus
Probab=45.20 E-value=52 Score=24.58 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=28.2
Q ss_pred eEEEEecCCCcEEEEEEecCCCCcc-EEEe-cccccCccc
Q psy1426 15 EEHKILTEDGYILTVFRIPNPGGYP-VLML-HGLTVSSDC 52 (64)
Q Consensus 15 e~h~v~T~DGyiL~l~Ri~~~~~~p-VlL~-HGl~~ss~~ 52 (64)
....|.|.||| +-+||+|.+++.+ +++- |.+..+.++
T Consensus 313 ~~v~vas~dG~-~y~y~l~~~~gGec~lik~h~~~~~~~t 351 (391)
T KOG2110|consen 313 PRVLVASYDGH-LYSYRLPPKEGGECALIKRHFLDGSIDT 351 (391)
T ss_pred CEEEEEEcCCe-EEEEEcCCCCCceeEEEEeeccCCcccc
Confidence 45678899998 7899998876666 6654 988877664
No 120
>PLN02606 palmitoyl-protein thioesterase
Probab=45.04 E-value=15 Score=26.33 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=12.1
Q ss_pred CCccEEEecccccCcc
Q psy1426 36 GGYPVLMLHGLTVSSD 51 (64)
Q Consensus 36 ~~~pVlL~HGl~~ss~ 51 (64)
...||++.|||.++..
T Consensus 25 ~~~PvViwHGlgD~~~ 40 (306)
T PLN02606 25 LSVPFVLFHGFGGECS 40 (306)
T ss_pred CCCCEEEECCCCcccC
Confidence 3578999999995543
No 121
>KOG1445|consensus
Probab=44.78 E-value=28 Score=28.22 Aligned_cols=34 Identities=29% Similarity=0.648 Sum_probs=25.1
Q ss_pred CcceEEEEecCCCcEEEEEEecCCC-----Ccc--EEEeccc
Q psy1426 12 YPSEEHKILTEDGYILTVFRIPNPG-----GYP--VLMLHGL 46 (64)
Q Consensus 12 y~~e~h~v~T~DGyiL~l~Ri~~~~-----~~p--VlL~HGl 46 (64)
|..|...|.|+|| ++.|+||+.+. ..| +|-.||=
T Consensus 638 FD~~rLAVa~ddg-~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 638 FDDERLAVATDDG-QINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CChHHeeecccCc-eEEEEEeccCCCCcccCCcceeeecccc
Confidence 5667888999998 57899998663 344 6666763
No 122
>PRK04940 hypothetical protein; Provisional
Probab=44.16 E-value=15 Score=24.34 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=11.4
Q ss_pred EEEecccccCccc
Q psy1426 40 VLMLHGLTVSSDC 52 (64)
Q Consensus 40 VlL~HGl~~ss~~ 52 (64)
++.+||+.+|+.+
T Consensus 2 IlYlHGF~SS~~S 14 (180)
T PRK04940 2 IIYLHGFDSTSPG 14 (180)
T ss_pred EEEeCCCCCCCCc
Confidence 5789999999887
No 123
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=43.41 E-value=54 Score=26.48 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHhhcCCcceEEEE-ecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKI-LTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v-~T~DGyiL~l~Ri~~~ 35 (64)
+...+...|+.+-.-+| +|.|||.|..|.+...
T Consensus 721 i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~ 754 (895)
T PRK00275 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754 (895)
T ss_pred HHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC
Confidence 45577889999977776 7889999999999543
No 124
>PF08108 Antimicrobial13: Halocidin family; InterPro: IPR012516 This family consists of the halocidin family of antimicrobial peptides. Halocidins are isolated from the haemocytes of the tunicate, Halocynthia aurantium (Sea peach). They are dimeric in structures, which are found via a disulphide linkage between cysteines of two different- sized monomers. Halocidins have been shown to have strong antimicrobial activities against a wide variety of pathogenic bacteria and could be ideal candidates as peptide antibiotics against multidrug-resistant bacteria [].; GO: 0042742 defense response to bacterium
Probab=42.40 E-value=9 Score=15.66 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=7.2
Q ss_pred EEecccccCc
Q psy1426 41 LMLHGLTVSS 50 (64)
Q Consensus 41 lL~HGl~~ss 50 (64)
+|.||+.+..
T Consensus 2 llhhglncak 11 (15)
T PF08108_consen 2 LLHHGLNCAK 11 (15)
T ss_pred ccccccchhh
Confidence 6789987653
No 125
>KOG1793|consensus
Probab=42.33 E-value=4.2 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.7
Q ss_pred EEEecccccCcccceecCCCCCCC
Q psy1426 40 VLMLHGLTVSSDCWFLRTPKEDLG 63 (64)
Q Consensus 40 VlL~HGl~~ss~~wv~~gp~~SLa 63 (64)
.||=||+|++--.|+-+.|+.||+
T Consensus 207 t~LDngvL~~lk~WLePLPD~SLP 230 (417)
T KOG1793|consen 207 TFLDNGVLDSLKEWLEPLPDGSLP 230 (417)
T ss_pred HHHhhhHHHHHHHHhccCCCCCCc
Confidence 789999999999999999999996
No 126
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=42.30 E-value=45 Score=18.03 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=14.2
Q ss_pred CHHHHHhhcCCcceEEEE
Q psy1426 2 RTDDMIRFWNYPSEEHKI 19 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v 19 (64)
|++.+++..||.+....-
T Consensus 41 di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 41 DIPKFCTFLGHELLAQET 58 (69)
T ss_pred HHHHHHHHcCCEEEEEEE
Confidence 567899999999976544
No 127
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=42.29 E-value=49 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHhhcCCcce-----EEEEecCCCcEEEEE
Q psy1426 5 DMIRFWNYPSE-----EHKILTEDGYILTVF 30 (64)
Q Consensus 5 ~~i~~~gy~~e-----~h~v~T~DGyiL~l~ 30 (64)
+.++..|+++. ...|+-.|||.+.+-
T Consensus 95 ~~l~~~Gv~~~~~~~~~~fi~DPDG~~ie~~ 125 (127)
T cd08358 95 SNAKKHNWPVTEVEDGVYEVKAPGGYKFYLI 125 (127)
T ss_pred HHHHHCCCceecCCCCEEEEECCCCCEEEEe
Confidence 45677888665 467888899988763
No 128
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=41.86 E-value=41 Score=18.61 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=13.8
Q ss_pred CCcc-eEEEEecCCC-----cEEEEEE
Q psy1426 11 NYPS-EEHKILTEDG-----YILTVFR 31 (64)
Q Consensus 11 gy~~-e~h~v~T~DG-----yiL~l~R 31 (64)
|-.. =+..|+.+|| |.|+++|
T Consensus 61 G~n~~i~i~Vta~dg~~~~tYti~V~R 87 (88)
T PF12733_consen 61 GENTVITITVTAEDGTTTKTYTITVTR 87 (88)
T ss_pred CCceEEEEEEEcCCCcEEEEEEEEEEe
Confidence 4343 4566777898 7777766
No 129
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=41.77 E-value=15 Score=26.12 Aligned_cols=19 Identities=37% Similarity=0.833 Sum_probs=12.9
Q ss_pred Ccc-EEEecccccCc--cccee
Q psy1426 37 GYP-VLMLHGLTVSS--DCWFL 55 (64)
Q Consensus 37 ~~p-VlL~HGl~~ss--~~wv~ 55 (64)
.+| ++++||..++. +.|+.
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~ 91 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQ 91 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHH
T ss_pred CCCeEEEEcCcCCcccchhHHH
Confidence 678 99999999998 47765
No 130
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=41.56 E-value=28 Score=20.46 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=25.3
Q ss_pred HHhhcCCcceEEEEecCCCcEEEEEEecCCCCccEEEeccc
Q psy1426 6 MIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGL 46 (64)
Q Consensus 6 ~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl 46 (64)
.++..+-+..+-.+.|.||--++ |.....-|||-||.
T Consensus 35 aAEeFkv~~~TsAiiTndGvGIN----P~qtAGnvflkhgs 71 (82)
T cd01766 35 AAEEFKVPAATSAIITNDGIGIN----PAQTAGNVFLKHGS 71 (82)
T ss_pred HHHhcCCCccceeEEecCccccC----hhhcccceeeecCC
Confidence 35667778888888999997542 22223349999984
No 131
>KOG2112|consensus
Probab=40.92 E-value=17 Score=24.77 Aligned_cols=15 Identities=40% Similarity=0.824 Sum_probs=13.6
Q ss_pred EEEecccccCcccce
Q psy1426 40 VLMLHGLTVSSDCWF 54 (64)
Q Consensus 40 VlL~HGl~~ss~~wv 54 (64)
|+++||+.+++..|.
T Consensus 6 Ii~LHglGDsg~~~~ 20 (206)
T KOG2112|consen 6 IIFLHGLGDSGSGWA 20 (206)
T ss_pred EEEEecCCCCCccHH
Confidence 899999999999875
No 132
>PRK07079 hypothetical protein; Provisional
Probab=40.51 E-value=91 Score=22.59 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=20.1
Q ss_pred HHHhhcCCcceEEEEecCCCcEEEEEEecCCCCcc
Q psy1426 5 DMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYP 39 (64)
Q Consensus 5 ~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~p 39 (64)
++++..|++++.+.....+|...-+-++..+.+.|
T Consensus 52 ~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~~~~ 86 (469)
T PRK07079 52 PALAALGFTCRIVDNPVAGGGPFLIAERIEDDALP 86 (469)
T ss_pred HHHHHCCCeEEEEecCCCCCCCEEEEEeCCCCCCC
Confidence 46788999988776543445433344443333335
No 133
>PRK11768 serine/threonine protein kinase; Provisional
Probab=39.92 E-value=31 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.6
Q ss_pred eEEEEecCCC--cEEEEEE
Q psy1426 15 EEHKILTEDG--YILTVFR 31 (64)
Q Consensus 15 e~h~v~T~DG--yiL~l~R 31 (64)
..+.|+|+|| |++.++|
T Consensus 40 ~vy~v~~~~~~~~vlKv~r 58 (325)
T PRK11768 40 RVYQFGDEDGRRVVAKFYR 58 (325)
T ss_pred eEEEEecCCCCEEEEEEcC
Confidence 4688899988 9999998
No 134
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=39.70 E-value=24 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.5
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
.++++++|.++|+| .||.|++-.++..
T Consensus 210 ~~la~~~~~~v~WH-----~Gf~L~v~~~~~d 236 (297)
T PF12294_consen 210 RALARRYGCPVEWH-----PGFRLSVDEVPRD 236 (297)
T ss_pred HHHHHhcCCceEee-----CCeEeehhhCchh
Confidence 35788999999999 5999999888743
No 135
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=39.13 E-value=17 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=13.4
Q ss_pred ccEEEecccccCc--cccee
Q psy1426 38 YPVLMLHGLTVSS--DCWFL 55 (64)
Q Consensus 38 ~pVlL~HGl~~ss--~~wv~ 55 (64)
++++++||+..+. +.|+.
T Consensus 42 ptvIlIHG~~~s~~~~~w~~ 61 (442)
T TIGR03230 42 KTFIVIHGWTVTGMFESWVP 61 (442)
T ss_pred CeEEEECCCCcCCcchhhHH
Confidence 3499999999764 46764
No 136
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=39.08 E-value=84 Score=20.92 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=14.4
Q ss_pred EecCCCcEEEEEEecCCCCc-cEEEecccc
Q psy1426 19 ILTEDGYILTVFRIPNPGGY-PVLMLHGLT 47 (64)
Q Consensus 19 v~T~DGyiL~l~Ri~~~~~~-pVlL~HGl~ 47 (64)
+.+.+.-+..+.-.|....+ +|++.||-.
T Consensus 7 ~~~~~~~l~g~~~~p~~~~~~~vv~i~gg~ 36 (274)
T TIGR03100 7 FSCEGETLVGVLHIPGASHTTGVLIVVGGP 36 (274)
T ss_pred EEcCCcEEEEEEEcCCCCCCCeEEEEeCCc
Confidence 34444444445555665334 466666543
No 137
>KOG2541|consensus
Probab=38.27 E-value=21 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.9
Q ss_pred CccEEEecccccCccc
Q psy1426 37 GYPVLMLHGLTVSSDC 52 (64)
Q Consensus 37 ~~pVlL~HGl~~ss~~ 52 (64)
.+||++.||+.+++.+
T Consensus 23 ~~P~ii~HGigd~c~~ 38 (296)
T KOG2541|consen 23 PVPVIVWHGIGDSCSS 38 (296)
T ss_pred cCCEEEEeccCccccc
Confidence 3799999999999876
No 138
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=38.20 E-value=62 Score=18.43 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=19.7
Q ss_pred HHHHHhhcCCcceEEEEe-cCCCcEE
Q psy1426 3 TDDMIRFWNYPSEEHKIL-TEDGYIL 27 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~-T~DGyiL 27 (64)
+..+.+.+||.++.-.+. |+|+=..
T Consensus 20 i~~lf~rRGfnI~sl~v~~t~~~~~s 45 (76)
T PRK11152 20 VLRVVRHRGFQVCSMNMTQNTDAQNI 45 (76)
T ss_pred HHHHHhcCCeeeeeEEeeecCCCCEE
Confidence 456889999999999998 7776433
No 139
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=37.74 E-value=21 Score=17.89 Aligned_cols=6 Identities=50% Similarity=1.298 Sum_probs=5.6
Q ss_pred EEEecc
Q psy1426 40 VLMLHG 45 (64)
Q Consensus 40 VlL~HG 45 (64)
|+++||
T Consensus 35 vilVHG 40 (43)
T PF07521_consen 35 VILVHG 40 (43)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999998
No 140
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=37.32 E-value=30 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEEEec
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVFRIP 33 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~ 33 (64)
.++....||..|...+. .|+|+|..|.=|
T Consensus 138 v~l~~~~gy~~e~~~~~-~~~~~l~e~nCP 166 (218)
T COG2345 138 VELLSDLGYMPELRPVD-NGRVQLIEHNCP 166 (218)
T ss_pred HHHHHhCCccccccccC-CCceEEEecCCc
Confidence 56888999999988887 899999999876
No 141
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=37.16 E-value=26 Score=22.03 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.5
Q ss_pred ccEEEecccccCcccce
Q psy1426 38 YPVLMLHGLTVSSDCWF 54 (64)
Q Consensus 38 ~pVlL~HGl~~ss~~wv 54 (64)
+|||+.|+..+++..|.
T Consensus 1 ~~lf~~p~~gG~~~~y~ 17 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYR 17 (229)
T ss_dssp -EEEEESSTTCSGGGGH
T ss_pred CeEEEEcCCccCHHHHH
Confidence 47999999999887664
No 142
>PF14702 hGDE_central: central domain of human glycogen debranching enzyme
Probab=37.11 E-value=1.4e+02 Score=20.68 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=26.6
Q ss_pred HHHhhcCCcceEEEEecCCCcEEEEEEecCCCCcc-EEEecccccC
Q psy1426 5 DMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYP-VLMLHGLTVS 49 (64)
Q Consensus 5 ~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~p-VlL~HGl~~s 49 (64)
..+...||. |. .|.- ||=+++++|......+. +|+-|=-+..
T Consensus 14 ~~la~~g~d-E~-~Vh~-~~d~Itv~R~~p~T~~gv~LIA~TaF~~ 56 (260)
T PF14702_consen 14 TELAQEGFD-EV-HVHQ-EGDYITVHRHNPKTHKGVFLIAHTAFSG 56 (260)
T ss_pred HHHHHcCCC-EE-EEee-cCCEEEEEecCCCCCCeEEEEEEeccCC
Confidence 456678888 44 4444 66667999986666666 4555644443
No 143
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.88 E-value=23 Score=23.20 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=10.8
Q ss_pred EEEecccccCccc
Q psy1426 40 VLMLHGLTVSSDC 52 (64)
Q Consensus 40 VlL~HGl~~ss~~ 52 (64)
++.+||+.+|..+
T Consensus 2 ilYlHGF~Ssp~S 14 (187)
T PF05728_consen 2 ILYLHGFNSSPQS 14 (187)
T ss_pred eEEecCCCCCCCC
Confidence 5789999998854
No 144
>PF05959 DUF884: Nucleopolyhedrovirus protein of unknown function (DUF884); InterPro: IPR009235 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf146; it is a family of uncharacterised viral proteins.
Probab=36.11 E-value=26 Score=23.43 Aligned_cols=13 Identities=31% Similarity=0.976 Sum_probs=11.9
Q ss_pred CCCcEEEEEEecC
Q psy1426 22 EDGYILTVFRIPN 34 (64)
Q Consensus 22 ~DGyiL~l~Ri~~ 34 (64)
.|+|+++++|.|.
T Consensus 71 ~~aYViSc~RlP~ 83 (186)
T PF05959_consen 71 KNAYVISCFRLPF 83 (186)
T ss_pred CCcEEEEEEechh
Confidence 7999999999984
No 145
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.74 E-value=90 Score=20.86 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=21.9
Q ss_pred eEEEEecCCCcEEEEEEecCCCC-cc-EEEecccccCc
Q psy1426 15 EEHKILTEDGYILTVFRIPNPGG-YP-VLMLHGLTVSS 50 (64)
Q Consensus 15 e~h~v~T~DGyiL~l~Ri~~~~~-~p-VlL~HGl~~ss 50 (64)
+...+.++|+-+=...--|.+++ .| |++.|++..-.
T Consensus 3 ~~v~~~~~~~~~~~~~a~P~~~~~~P~VIv~hei~Gl~ 40 (236)
T COG0412 3 TDVTIPAPDGELPAYLARPAGAGGFPGVIVLHEIFGLN 40 (236)
T ss_pred cceEeeCCCceEeEEEecCCcCCCCCEEEEEecccCCc
Confidence 45677788843333333354443 37 99999987644
No 146
>PRK06446 hypothetical protein; Provisional
Probab=35.58 E-value=1.2e+02 Score=21.70 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=24.0
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEEEecCCCCccEEEecccccC
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVS 49 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl~~s 49 (64)
.+.++..|+.+|.+.+ .+++.|- -+++.+. +|-++..|=++-
T Consensus 32 ~~~l~~~G~~ve~~~~--~~~~~li-a~~~~~~-~~~vll~gH~Dv 73 (436)
T PRK06446 32 KDTMEKLGIKANIERT--KGHPVVY-GEINVGA-KKTLLIYNHYDV 73 (436)
T ss_pred HHHHHHCCCeEEEEec--CCCCEEE-EEecCCC-CCEEEEEecccC
Confidence 4678899999987654 4566553 3455432 453333444443
No 147
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=35.06 E-value=1e+02 Score=24.53 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=27.0
Q ss_pred HHHHHhhcCCcceEEEEe-cCCCcEEEEEEecC
Q psy1426 3 TDDMIRFWNYPSEEHKIL-TEDGYILTVFRIPN 34 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~-T~DGyiL~l~Ri~~ 34 (64)
+...+..+|..+..-+|. |.||+.+.+|.+..
T Consensus 685 i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~ 717 (850)
T TIGR01693 685 VAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD 717 (850)
T ss_pred HHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC
Confidence 456778899999888887 99999999999953
No 148
>KOG2237|consensus
Probab=34.95 E-value=59 Score=26.06 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=30.4
Q ss_pred hhcCCcceEEEEecCCCcEEEEEEecCC-----CCcc-EEEeccccc
Q psy1426 8 RFWNYPSEEHKILTEDGYILTVFRIPNP-----GGYP-VLMLHGLTV 48 (64)
Q Consensus 8 ~~~gy~~e~h~v~T~DGyiL~l~Ri~~~-----~~~p-VlL~HGl~~ 48 (64)
..-.|.||.+.|.+.||-.+-|+=+.++ ..+| .|..+|-..
T Consensus 435 ~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~ 481 (712)
T KOG2237|consen 435 DASDYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYG 481 (712)
T ss_pred cccceEEEEEEEecCCCCccceEEEEechhhhcCCCceEEEEecccc
Confidence 3447899999999999999888877644 2578 566666544
No 149
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=34.80 E-value=1e+02 Score=21.51 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=29.1
Q ss_pred CHHHHHhh-cCCcceEEEEecCCCcEEEEEEecCCCCcc-EEEecc
Q psy1426 2 RTDDMIRF-WNYPSEEHKILTEDGYILTVFRIPNPGGYP-VLMLHG 45 (64)
Q Consensus 2 ~~~~~i~~-~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~p-VlL~HG 45 (64)
+..|+++. .-.+.+++..+|..|..|..-+| +..|| |++.=|
T Consensus 3 ~~~~i~~~l~~~~g~~~~a~S~EGR~I~~l~i--~~~Kp~I~I~gG 46 (240)
T cd06232 3 SAGQIAYELAVLPGIEFAARSRQGRPVTGRYV--AGLDHPVVISAG 46 (240)
T ss_pred CHHHHHHHHhhcCCccccccccCCCeeeEEEe--cCCCcEEEEeCC
Confidence 44555544 34567788889999999998888 34578 666433
No 150
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=34.69 E-value=51 Score=17.77 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.3
Q ss_pred CcceEEEEecCCCcEEEE
Q psy1426 12 YPSEEHKILTEDGYILTV 29 (64)
Q Consensus 12 y~~e~h~v~T~DGyiL~l 29 (64)
++-+.++|+|++|+.|.+
T Consensus 56 ~~~~~~~i~t~~g~~i~~ 73 (81)
T TIGR01445 56 AEGKLIRIKTENGREIKA 73 (81)
T ss_pred CCCcEEEEEeCCCCEEEE
Confidence 444667788888877753
No 151
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=33.62 E-value=29 Score=22.20 Aligned_cols=15 Identities=40% Similarity=0.714 Sum_probs=10.4
Q ss_pred EEEecccccCcc-cce
Q psy1426 40 VLMLHGLTVSSD-CWF 54 (64)
Q Consensus 40 VlL~HGl~~ss~-~wv 54 (64)
|+++||+..|.. .|.
T Consensus 1 v~IvhG~~~s~~~HW~ 16 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQ 16 (171)
T ss_dssp EEEE--TTSSTTTSTH
T ss_pred CEEeCCCCCCCccHHH
Confidence 789999999976 664
No 152
>PRK06437 hypothetical protein; Provisional
Probab=32.83 E-value=59 Score=17.72 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=20.4
Q ss_pred CCHHHHHhhcCCcceEEEEecCCCcEEE
Q psy1426 1 MRTDDMIRFWNYPSEEHKILTEDGYILT 28 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v~T~DGyiL~ 28 (64)
+++.|+++..|++.+...|. -+|-++.
T Consensus 21 ~tv~dLL~~Lgi~~~~vaV~-vNg~iv~ 47 (67)
T PRK06437 21 LTVNDIIKDLGLDEEEYVVI-VNGSPVL 47 (67)
T ss_pred CcHHHHHHHcCCCCccEEEE-ECCEECC
Confidence 36789999999998887666 5665554
No 153
>PRK14639 hypothetical protein; Provisional
Probab=32.77 E-value=1.1e+02 Score=19.28 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=24.2
Q ss_pred CCHHHHHhhcCCcceEEEEecCC-CcEEEEEE
Q psy1426 1 MRTDDMIRFWNYPSEEHKILTED-GYILTVFR 31 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v~T~D-GyiL~l~R 31 (64)
|+...+++..||.+..-.+.++. +.+|.++=
T Consensus 1 ~~~ep~~~~~G~eLvdve~~~~~~~~~lrV~I 32 (140)
T PRK14639 1 MNLEALCKECGVSFYDDELVSENGRKIYRVYI 32 (140)
T ss_pred CchhHhHHhCCCEEEEEEEEecCCCcEEEEEE
Confidence 67788999999999999888764 46666553
No 154
>PRK11018 hypothetical protein; Provisional
Probab=32.29 E-value=77 Score=17.71 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=16.6
Q ss_pred CHHHHHhhcCCcceEEEEecCCC-cEEE
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDG-YILT 28 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DG-yiL~ 28 (64)
|++.+++..||.+.... ..+| |.+.
T Consensus 50 di~~~~~~~G~~v~~~~--~~~g~~~~~ 75 (78)
T PRK11018 50 NIPLDARNHGYTVLDIQ--QDGPTIRYL 75 (78)
T ss_pred HHHHHHHHcCCEEEEEE--ecCCeEEEE
Confidence 46789999999986543 2344 4443
No 155
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=32.15 E-value=39 Score=19.37 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.5
Q ss_pred CCHHHHHhhcCCcceEEEE
Q psy1426 1 MRTDDMIRFWNYPSEEHKI 19 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v 19 (64)
|++.+++++.|++++..+.
T Consensus 5 mkIk~~L~e~Gi~~~ve~~ 23 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSC 23 (85)
T ss_pred HHHHHHHHHcCCCeEEEEe
Confidence 5688999999997665544
No 156
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=31.36 E-value=79 Score=16.00 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.4
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+...+..+|..+..-.+.|.+++...++++..+
T Consensus 17 i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~ 49 (70)
T cd04873 17 ITRVLADLGLNIHDARISTTGERALDVFYVTDS 49 (70)
T ss_pred HHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC
Confidence 456788999999888888876688888888543
No 157
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.92 E-value=86 Score=16.35 Aligned_cols=26 Identities=8% Similarity=-0.180 Sum_probs=16.0
Q ss_pred CHHHHHhhcCCcceEEEEecCCCcEEE
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDGYILT 28 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DGyiL~ 28 (64)
++..+++..||.+....-. .+.|.+.
T Consensus 41 ~i~~~~~~~g~~~~~~~~~-~~~~~i~ 66 (69)
T cd00291 41 DIPAWAKETGHEVLEVEEE-GGVYRIL 66 (69)
T ss_pred HHHHHHHHcCCEEEEEEEe-CCEEEEE
Confidence 3567899999997553322 2345544
No 158
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=30.88 E-value=46 Score=19.54 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.0
Q ss_pred EEEEecCCCcEEEEEEecC
Q psy1426 16 EHKILTEDGYILTVFRIPN 34 (64)
Q Consensus 16 ~h~v~T~DGyiL~l~Ri~~ 34 (64)
.-.+..-|||.|.+.+++.
T Consensus 38 ~l~~vATDg~RLa~~~~~~ 56 (116)
T PF02767_consen 38 KLRLVATDGHRLAVREIEL 56 (116)
T ss_dssp EEEEEEEESSEEEEEEEEE
T ss_pred EEEEEEeCCceEEEEEEec
Confidence 3456677999999999964
No 159
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=30.79 E-value=71 Score=17.65 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=9.4
Q ss_pred cCCcceEEEEe
Q psy1426 10 WNYPSEEHKIL 20 (64)
Q Consensus 10 ~gy~~e~h~v~ 20 (64)
.||.|+.+.++
T Consensus 10 ~G~~c~ky~v~ 20 (89)
T PF14371_consen 10 AGYKCEKYEVT 20 (89)
T ss_pred CCEEeEEEEEE
Confidence 68999999985
No 160
>KOG1546|consensus
Probab=30.74 E-value=49 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=22.2
Q ss_pred HHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 6 MIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 6 ~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+++++||+-|...+-|++-= +-.|+|-+
T Consensus 94 Lv~rfGFs~ddI~~LtDt~~--s~~~~PT~ 121 (362)
T KOG1546|consen 94 LVERFGFSEDDILMLTDTDE--SPVRIPTG 121 (362)
T ss_pred HHHhhCCChhheEEEecCCC--cccccCcH
Confidence 79999999999999988654 34567755
No 161
>PF14120 YhzD: YhzD-like protein
Probab=30.58 E-value=82 Score=17.63 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHhhcCCcceEEEEecCCCcEEEEEE
Q psy1426 5 DMIRFWNYPSEEHKILTEDGYILTVFR 31 (64)
Q Consensus 5 ~~i~~~gy~~e~h~v~T~DGyiL~l~R 31 (64)
++++..||.-.+|+++...|=.|=.||
T Consensus 35 ~~L~Ek~~~~~THR~v~~~GKLiLFhr 61 (61)
T PF14120_consen 35 QKLKEKGYEEKTHRCVSSSGKLILFHR 61 (61)
T ss_pred HHHHHCChhhcceeeeCCCCcEEEeeC
Confidence 478888999999999988887665554
No 162
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=29.88 E-value=57 Score=18.78 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=27.7
Q ss_pred CHHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
|+.++|+..|-|-.+-....-||-....-+++..
T Consensus 34 tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~ 67 (81)
T PF14451_consen 34 TVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKD 67 (81)
T ss_pred cHHHHHHHcCCChHHeEEEEECCEECCCcccCCC
Confidence 5788999999999999888888887776666544
No 163
>PRK03381 PII uridylyl-transferase; Provisional
Probab=29.55 E-value=1.4e+02 Score=23.65 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=30.0
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG 36 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~ 36 (64)
+...+..+|..+..-+|.|.+|+.+.+|.+....
T Consensus 724 Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 724 LARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred HHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 5677889999999999999999999999996543
No 164
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=29.39 E-value=1.1e+02 Score=20.83 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=24.0
Q ss_pred CHHHHHhhcCCcceEEEEe-----cCCCcEEEEEEec
Q psy1426 2 RTDDMIRFWNYPSEEHKIL-----TEDGYILTVFRIP 33 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~-----T~DGyiL~l~Ri~ 33 (64)
++.++++..||..+.-.|+ ..++-++.|+|+.
T Consensus 142 ~~~~fl~~lGy~~~~Eyv~~G~~F~~g~i~I~l~ri~ 178 (250)
T PF09637_consen 142 SLLSFLNELGYRFDYEYVVEGYRFFKGDIVIELFRIF 178 (250)
T ss_dssp SHHHHHHHTTEEEEEEEEEEEEEEEECCEEEEEEEEE
T ss_pred CHHHHHHHcCCceEEEEEEEEEEEEECCEEEEEEEEE
Confidence 5678999999987554443 2388999999984
No 165
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=28.58 E-value=1.5e+02 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG 36 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~ 36 (64)
+...+...|..+..-+|.|.||+.+.+|.|....
T Consensus 831 I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 831 IGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred HHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 5667889999999999999999999999996543
No 166
>PRK07907 hypothetical protein; Provisional
Probab=28.29 E-value=1.9e+02 Score=20.76 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=20.2
Q ss_pred HHHHhhcCC-cceEEEEecCCCcEEEEEEecCCCCccEEEecc
Q psy1426 4 DDMIRFWNY-PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45 (64)
Q Consensus 4 ~~~i~~~gy-~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HG 45 (64)
.+.++..|+ .++.+. + ||...-+-+++.++.+|.++..|
T Consensus 51 ~~~l~~~g~~~~~~~~--~-~~~~nl~a~~~~~~~~~~lll~g 90 (449)
T PRK07907 51 ADLLREAGFDDVRVVS--A-DGAPAVIGTRPAPPGAPTVLLYA 90 (449)
T ss_pred HHHHHHcCCceEEEEe--c-CCCCEEEEEecCCCCCCEEEEEc
Confidence 457788998 566555 3 44333344555443345333333
No 167
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=28.27 E-value=1.5e+02 Score=23.81 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=26.5
Q ss_pred HHHHHhhcCCcceEEEEec-CCCcEEEEEEecC
Q psy1426 3 TDDMIRFWNYPSEEHKILT-EDGYILTVFRIPN 34 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T-~DGyiL~l~Ri~~ 34 (64)
+...+..+|..+-.-+|.| .||+.+..|.+..
T Consensus 694 Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d 726 (854)
T PRK01759 694 VVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE 726 (854)
T ss_pred HHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC
Confidence 4556788999998888765 9999999999953
No 168
>COG4196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.03 E-value=65 Score=25.54 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=21.1
Q ss_pred EEEecCCCcEEEEEEecCCC---------Ccc-EEEecc
Q psy1426 17 HKILTEDGYILTVFRIPNPG---------GYP-VLMLHG 45 (64)
Q Consensus 17 h~v~T~DGyiL~l~Ri~~~~---------~~p-VlL~HG 45 (64)
--+++.+||+|.+||-..+. .+. ++|+.|
T Consensus 213 ~~lT~P~~YvLpl~~~d~~~sW~s~~w~~rRGri~Lv~g 251 (808)
T COG4196 213 EGLTSPAAYVLPLHRRDDGASWASAKWRLRRGRIVLVEG 251 (808)
T ss_pred hccCCCcceEEeeeecCCcchhhhhhhhhhcceEEEecC
Confidence 45789999999999975431 334 777766
No 169
>PRK07522 acetylornithine deacetylase; Provisional
Probab=27.76 E-value=1.8e+02 Score=20.02 Aligned_cols=24 Identities=21% Similarity=-0.026 Sum_probs=15.5
Q ss_pred HHHHhhcCCcceEEEEecCCCcEE
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYIL 27 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL 27 (64)
.+.++++|++++.+.....++..+
T Consensus 32 ~~~l~~~G~~~~~~~~~~~~~~nv 55 (385)
T PRK07522 32 RDYLAAHGVESELIPDPEGDKANL 55 (385)
T ss_pred HHHHHHcCCeEEEEecCCCCcccE
Confidence 467888999988775443333444
No 170
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=26.65 E-value=1.2e+02 Score=23.72 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=23.8
Q ss_pred hcCCcceEEEEecCCCcEEE--EEEecCC-CCccEEE
Q psy1426 9 FWNYPSEEHKILTEDGYILT--VFRIPNP-GGYPVLM 42 (64)
Q Consensus 9 ~~gy~~e~h~v~T~DGyiL~--l~Ri~~~-~~~pVlL 42 (64)
..||......|++.||-.|. +|| |++ .+.||+|
T Consensus 14 ~~~~~~~~v~V~MRDGvrL~~dIy~-Pa~~g~~Pvll 49 (563)
T COG2936 14 YAGYIERDVMVPMRDGVRLAADIYR-PAGAGPLPVLL 49 (563)
T ss_pred ccceeeeeeeEEecCCeEEEEEEEc-cCCCCCCceeE
Confidence 35677888999999999997 555 554 3567554
No 171
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=26.46 E-value=34 Score=22.67 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=15.2
Q ss_pred hcCCcceEEEEecCCCcE
Q psy1426 9 FWNYPSEEHKILTEDGYI 26 (64)
Q Consensus 9 ~~gy~~e~h~v~T~DGyi 26 (64)
..|+.+|...+.|+|||.
T Consensus 203 ~~gvried~v~Vt~~G~~ 220 (224)
T cd01085 203 KYGIRIENLVLVVEAETT 220 (224)
T ss_pred CeEEEeeEEEEEeeCCcC
Confidence 357889999999999983
No 172
>PRK03059 PII uridylyl-transferase; Provisional
Probab=26.18 E-value=1.4e+02 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHhhcCCcceEEEE-ecCCCcEEEEEEe
Q psy1426 3 TDDMIRFWNYPSEEHKI-LTEDGYILTVFRI 32 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v-~T~DGyiL~l~Ri 32 (64)
+...+..+|..+-.-.| +|.||++|..|.+
T Consensus 695 i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V 725 (856)
T PRK03059 695 ICGYFDRAGFSILDARVHTTRHGYALDTFQV 725 (856)
T ss_pred HHHHHHHCCCceeeeEEEEcCCCeEEEEEEE
No 173
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=25.81 E-value=90 Score=19.15 Aligned_cols=30 Identities=20% Similarity=-0.002 Sum_probs=23.8
Q ss_pred CHHHHHhhcCCcceEEEEecCCCcEEEEEEe
Q psy1426 2 RTDDMIRFWNYPSEEHKILTEDGYILTVFRI 32 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri 32 (64)
++..+|+.+|=-+|.-.+.+.||+ =-+-+|
T Consensus 1 ~mVklie~~G~~F~V~dm~~~dg~-~~V~~i 30 (102)
T PF03197_consen 1 SMVKLIEENGGWFEVKDMSSIDGD-YFVEKI 30 (102)
T ss_pred CHhHHHHHcCCcEEEeeeEecccc-eeEEEE
Confidence 356789999999999999999998 334444
No 174
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=25.73 E-value=91 Score=21.50 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=26.5
Q ss_pred CcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 24 GYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 24 GyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
|..|+|.|-|.+-.++-|+|-..-...-.|+.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~ 52 (228)
T cd04865 21 DRPLVLKRYPDGIDGKGFYQKDVPAGAPDWLR 52 (228)
T ss_pred CCceEeEECCCCCCCCceeeCCCCCCCCCceE
Confidence 67899999999877778888888777778885
No 175
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification.; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.
Probab=25.62 E-value=69 Score=22.16 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=12.3
Q ss_pred EEecCCCcEEEEEEecCC
Q psy1426 18 KILTEDGYILTVFRIPNP 35 (64)
Q Consensus 18 ~v~T~DGyiL~l~Ri~~~ 35 (64)
-|-|.||.|+++|-+.+.
T Consensus 157 lVs~~Dg~IVGiHsl~~~ 174 (235)
T PF00863_consen 157 LVSTKDGKIVGIHSLTSN 174 (235)
T ss_dssp EEETTT--EEEEEEEEET
T ss_pred EEEcCCCcEEEEEcCccC
Confidence 356778999999998654
No 176
>PRK14633 hypothetical protein; Provisional
Probab=25.33 E-value=1.7e+02 Score=18.55 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=21.6
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEEEEE
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILTVFR 31 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~l~R 31 (64)
..+++..||.+..-.+..+.+.+|.++=
T Consensus 11 ~p~~~~~G~eL~dve~~~~~~~~lrV~I 38 (150)
T PRK14633 11 EPITADLGYILWGIEVVGSGKLTIRIFI 38 (150)
T ss_pred HHHHHHCCCEEEEEEEEeCCCcEEEEEE
Confidence 4578899999999999887666666553
No 177
>PRK05231 homoserine kinase; Provisional
Probab=24.79 E-value=81 Score=21.21 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=14.7
Q ss_pred CCcceEEEEecCCC-cEEEEEE
Q psy1426 11 NYPSEEHKILTEDG-YILTVFR 31 (64)
Q Consensus 11 gy~~e~h~v~T~DG-yiL~l~R 31 (64)
|..-+.+.|+|++| |+|.+++
T Consensus 33 G~~n~~y~v~t~~g~~vLK~~~ 54 (319)
T PRK05231 33 GIENSNFFLTTTQGEYVLTLFE 54 (319)
T ss_pred ccccceEEEEeCCCcEEEEEec
Confidence 33345678887765 9998886
No 178
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=24.75 E-value=1.3e+02 Score=17.25 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=15.0
Q ss_pred HHHHHhhcCCcceEEEEecC---CCcEEEEEEe
Q psy1426 3 TDDMIRFWNYPSEEHKILTE---DGYILTVFRI 32 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~---DGyiL~l~Ri 32 (64)
+.+-+...||.++...-..+ ..|.+.+.|.
T Consensus 41 f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~ 73 (104)
T PF06877_consen 41 FAEELEKLGYEVESAEEDEEDGDGPYCLDISRE 73 (104)
T ss_dssp HHHHHHHHS---B----B-SS-SSBEEEEEEEE
T ss_pred HHHHHHHCCCEEEEeecccCCCCceEEEEEEEe
Confidence 34578889999988776322 2378888876
No 179
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=24.59 E-value=1.2e+02 Score=16.37 Aligned_cols=16 Identities=0% Similarity=-0.251 Sum_probs=12.6
Q ss_pred CHHHHHhhcCCcceEE
Q psy1426 2 RTDDMIRFWNYPSEEH 17 (64)
Q Consensus 2 ~~~~~i~~~gy~~e~h 17 (64)
|++..++..||.+...
T Consensus 41 di~~~~~~~G~~~~~~ 56 (69)
T cd03420 41 DAQAWCKSTGNTLISL 56 (69)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 4677899999998743
No 180
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=24.44 E-value=2.8e+02 Score=20.07 Aligned_cols=55 Identities=20% Similarity=0.090 Sum_probs=39.4
Q ss_pred HHHHHhhcCCcceEEEEec--CCCcEEE--EEEecCCC------------------------------------Ccc-EE
Q psy1426 3 TDDMIRFWNYPSEEHKILT--EDGYILT--VFRIPNPG------------------------------------GYP-VL 41 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T--~DGyiL~--l~Ri~~~~------------------------------------~~p-Vl 41 (64)
+.+.++..|..++.|...+ .||=-|. +-++..++ ..+ ||
T Consensus 12 Fl~aA~~~ga~~~~~~~p~~G~~ge~L~~Dva~lg~~~a~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~~~~~~~~~avl 91 (341)
T PF10994_consen 12 FLAAAEAAGAKLESYPHPLRGPDGEDLATDVAWLGPKDASRLLVLTSGTHGVEGFAGSAIQIALLREDLARSLPAGVAVL 91 (341)
T ss_pred HHHHHHHcCCcceeeeCCCCCCCCCcceeEEEEecCCCCCeEEEEEecCCcccccccHHHHHHHHHcccccccCCCCeEE
Confidence 4567888999999999998 6776665 56664320 234 88
Q ss_pred EecccccCcccceecC
Q psy1426 42 MLHGLTVSSDCWFLRT 57 (64)
Q Consensus 42 L~HGl~~ss~~wv~~g 57 (64)
|+|.|.-=...|....
T Consensus 92 lVHAlNPyGfa~~RR~ 107 (341)
T PF10994_consen 92 LVHALNPYGFAWLRRV 107 (341)
T ss_pred EEEccCccccceeecc
Confidence 8888888888887643
No 181
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=24.39 E-value=1e+02 Score=21.32 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=25.9
Q ss_pred CcEEEEEEecCCCCccEEEecccccCccccee
Q psy1426 24 GYILTVFRIPNPGGYPVLMLHGLTVSSDCWFL 55 (64)
Q Consensus 24 GyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~ 55 (64)
|..|+|.|-|.+-.++-|+|-..-...-.|+.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfQK~~~~~~P~wv~ 52 (231)
T cd04863 21 GRPVTRKRWPDGVDGPFFFEKNCPSGAPDWLP 52 (231)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceE
Confidence 56899999999877777888877777777875
No 182
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=24.20 E-value=1e+02 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.8
Q ss_pred CcEEEEEEecCCCCccEEEecccccCcccceec
Q psy1426 24 GYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 24 GyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~~ 56 (64)
|..|++.|-|.+-.++-|+|-..-...-.|+..
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~p~~~P~wv~t 53 (228)
T cd04864 21 GRPITLERFPDGIGKPGFYQKEAPEHFPDWIER 53 (228)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceEE
Confidence 678999999998777788888887777788753
No 183
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=24.02 E-value=87 Score=21.96 Aligned_cols=26 Identities=38% Similarity=0.419 Sum_probs=20.9
Q ss_pred HHHHHhhcCCcceEEEEec--C-CCcEEE
Q psy1426 3 TDDMIRFWNYPSEEHKILT--E-DGYILT 28 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T--~-DGyiL~ 28 (64)
+.++++.+||+++...+.| + ||-.++
T Consensus 158 Lk~~~~dl~~~v~ii~~~~vr~~dGlaiS 186 (277)
T cd00560 158 IRRMVRDLNLPVEIVGCPTVREEDGLALS 186 (277)
T ss_pred HHHHHHHcCCeEEEEcCCceecCCCceEe
Confidence 3578899999999998777 4 887654
No 184
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.88 E-value=68 Score=18.33 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+.++++++|+....| ..++|..=.-.+|+..
T Consensus 15 ~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~ 45 (97)
T PF10087_consen 15 YKRILEKYGGKLIHH--GRDGGDEKKASRLPSK 45 (97)
T ss_pred HHHHHHHcCCEEEEE--ecCCCCccchhHHHHh
Confidence 467899999999999 5555554444445443
No 185
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=23.75 E-value=1.2e+02 Score=19.97 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.3
Q ss_pred HhhcCCcceEEEEecC-CCcEEEEE
Q psy1426 7 IRFWNYPSEEHKILTE-DGYILTVF 30 (64)
Q Consensus 7 i~~~gy~~e~h~v~T~-DGyiL~l~ 30 (64)
+...||.+.+..++|. ||-.+.+.
T Consensus 28 LN~LGFdV~El~~~~~~~g~~~~i~ 52 (165)
T PF13224_consen 28 LNELGFDVGELEITTDDDGTRLRIQ 52 (165)
T ss_pred HHhcCCceeeeEeEEcCCCCEEEEE
Confidence 4568999999999976 66666554
No 186
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=23.64 E-value=1e+02 Score=21.46 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCcEEEEEEecCCCCccEEEecccccCcccceec
Q psy1426 23 DGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 23 DGyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~~ 56 (64)
-|..|++.|.|.+-+++-|+|-..-...-.|+..
T Consensus 37 ~~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t 70 (245)
T TIGR02778 37 RGRPLSLLRCPDGIGGECFFQKHLPQGAPPFVVS 70 (245)
T ss_pred cCCceEeEECCCCCCCCceeecCCCCCCCCceEE
Confidence 3678999999998777788888887777788763
No 187
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=23.29 E-value=1.1e+02 Score=21.13 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCCccEEEecccccCcccceecC
Q psy1426 24 GYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLRT 57 (64)
Q Consensus 24 GyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~~g 57 (64)
|..|+|.|-|.+-..+-|+|-..-...-.|+..-
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~ 54 (227)
T cd04861 21 GRPLTLVRYPDGIDGESFFQKHAPAGAPDWVRTV 54 (227)
T ss_pred CCceEeEECCCCCCCCceeeCCCCCCCCCceEEE
Confidence 6789999999987777888888888887888643
No 188
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=22.90 E-value=1.1e+02 Score=21.04 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=26.7
Q ss_pred CcEEEEEEecCCCCccEEEecccccCcccceec
Q psy1426 24 GYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 24 GyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~~ 56 (64)
|..|++.|.|.+-.++-|+|-..-...-.|+..
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t 53 (227)
T cd04862 21 GRPLSLVRCPDGIGGECFFQKHAGAGLPPGVEQ 53 (227)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceEE
Confidence 678999999998777778888887777788764
No 189
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=1.7e+02 Score=24.24 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=20.3
Q ss_pred HHhhcCCcc-eEEEEecCCCcEEEEEEec
Q psy1426 6 MIRFWNYPS-EEHKILTEDGYILTVFRIP 33 (64)
Q Consensus 6 ~i~~~gy~~-e~h~v~T~DGyiL~l~Ri~ 33 (64)
.+...|..+ ...-++|.|||.|..+=|.
T Consensus 704 ~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 704 ALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred HHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 445566655 4556679999999999775
No 190
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.81 E-value=1.5e+02 Score=16.38 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=13.9
Q ss_pred HHHHhhcCCcceEEEEecCCCcEEE
Q psy1426 4 DDMIRFWNYPSEEHKILTEDGYILT 28 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T~DGyiL~ 28 (64)
.+.++..||.+.+.++.-+.+|-+.
T Consensus 35 ~~~l~~~G~~v~~ve~~~~g~yev~ 59 (83)
T PF13670_consen 35 VAKLEAQGYQVREVEFDDDGCYEVE 59 (83)
T ss_pred HHHHHhcCCceEEEEEcCCCEEEEE
Confidence 4578889995544444333344444
No 191
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=22.60 E-value=56 Score=19.96 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=9.5
Q ss_pred EEEecccccCcc--cceecC
Q psy1426 40 VLMLHGLTVSSD--CWFLRT 57 (64)
Q Consensus 40 VlL~HGl~~ss~--~wv~~g 57 (64)
-||+||+-.|++ -|||..
T Consensus 10 gFlL~Gi~~SA~V~~~ic~~ 29 (103)
T PF14830_consen 10 GFLLHGIGTSADVKFYICKP 29 (103)
T ss_dssp EE--B--SS-EEEEEEEEES
T ss_pred eeeccCCCceEEEEEEEECC
Confidence 479999999998 566654
No 192
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=22.51 E-value=75 Score=16.09 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.5
Q ss_pred HHHHHhhcCCcceEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTED 23 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~D 23 (64)
+.++++..|.+.+++.|.+..
T Consensus 15 ~~~~L~~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 15 AKEFLDEKGIPYEEVDVDEDE 35 (60)
T ss_dssp HHHHHHHTTBEEEEEEGGGSH
T ss_pred HHHHHHHcCCeeeEcccccch
Confidence 456889999999999998764
No 193
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=22.25 E-value=17 Score=19.16 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=24.8
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCCC-CccEEEecc
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG-GYPVLMLHG 45 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~-~~pVlL~HG 45 (64)
+.++++.+|.+.++..|...+...-.+.+..... .-|+++..|
T Consensus 16 ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 16 AKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred HHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 4567889999999998875422222222222222 457666655
No 194
>PHA02264 hypothetical protein
Probab=22.21 E-value=53 Score=21.13 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHhhcCCcceEEEEec-CCCcEEEEEEe
Q psy1426 4 DDMIRFWNYPSEEHKILT-EDGYILTVFRI 32 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~T-~DGyiL~l~Ri 32 (64)
+++++--|-||-.+-+.| +||-.++++--
T Consensus 102 p~ii~v~g~p~~q~l~isl~~~~~it~~yn 131 (152)
T PHA02264 102 PKVITVEGKPSYQFLTISLEDARVITVWYN 131 (152)
T ss_pred CcEEEEcCceeeEEEEEEccCceEEEEEec
Confidence 456777899999999998 89999988753
No 195
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=22.09 E-value=2.8e+02 Score=19.71 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=12.8
Q ss_pred HHHHhhcCCcceEEEEe
Q psy1426 4 DDMIRFWNYPSEEHKIL 20 (64)
Q Consensus 4 ~~~i~~~gy~~e~h~v~ 20 (64)
.+.++.+|+.++.+.+.
T Consensus 67 ~~~L~~~G~~v~~~~~~ 83 (410)
T PRK06133 67 AERLKALGAKVERAPTP 83 (410)
T ss_pred HHHHHhCCCeEEEEccC
Confidence 46788899998877653
No 196
>PF09133 SANTA: SANTA (SANT Associated); InterPro: IPR015216 The SANTA domain (SANT associated) is approximately 90 amino acids in length and is conserved in eukaryotes. It is sometimes found in association with the SANT domain (IPR001005 from INTERPRO, also known as the Myb-like DNA-binding domain) implying a putative function in regulating chromatin remodelling. Sequence analysis has showed that the SANTA domain is likely to form four central beta-sheets with three flanking alpha-helices. Many conserved hydrophobic residues are present which implies a possible role in protein-protein interactions.
Probab=22.07 E-value=79 Score=18.54 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=11.7
Q ss_pred eEEEEecCCCcEEEEEE
Q psy1426 15 EEHKILTEDGYILTVFR 31 (64)
Q Consensus 15 e~h~v~T~DGyiL~l~R 31 (64)
+.+.+.|+||.+..|.-
T Consensus 41 ~~~~l~T~sG~~y~L~G 57 (93)
T PF09133_consen 41 DSTTLETESGIIYILVG 57 (93)
T ss_pred cCcEEEeCCCcEEEEec
Confidence 44678889998666554
No 197
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=22.07 E-value=53 Score=20.65 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=16.2
Q ss_pred CCcc-EEEecccccCccccee
Q psy1426 36 GGYP-VLMLHGLTVSSDCWFL 55 (64)
Q Consensus 36 ~~~p-VlL~HGl~~ss~~wv~ 55 (64)
++|| ||-.||--+..-+|+.
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHH
Confidence 4689 9999999888777754
No 198
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=22.05 E-value=1.9e+02 Score=17.29 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.4
Q ss_pred HHhhcCCcceEEEEecCC--CcEEEEEEecC
Q psy1426 6 MIRFWNYPSEEHKILTED--GYILTVFRIPN 34 (64)
Q Consensus 6 ~i~~~gy~~e~h~v~T~D--GyiL~l~Ri~~ 34 (64)
.+++.||.++....+..| |+.-....|..
T Consensus 75 ~a~~~gw~~~~l~~~~~~~~G~k~a~~~I~G 105 (115)
T PF03462_consen 75 YAERRGWKVEVLDYSPGEEGGIKSATLEISG 105 (115)
T ss_dssp HHHHTT-EEEEEEEEE-SSSSEEEEEEEEES
T ss_pred HHHHcCCEEEEEecCCCCccceeEEEEEEEc
Confidence 678899999999988665 78777777743
No 199
>KOG3483|consensus
Probab=21.75 E-value=1.2e+02 Score=18.04 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred HhhcCCcceEEEEecCCCcEEEEEEecCCCCccEEEeccc
Q psy1426 7 IRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGL 46 (64)
Q Consensus 7 i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVlL~HGl 46 (64)
++...-|..+-.|.|.||--++.. ....-|||-||.
T Consensus 47 aeefkvpaatsaiitndgiginpa----q~agnvflkhgs 82 (94)
T KOG3483|consen 47 AEEFKVPAATSAIITNDGIGINPA----QTAGNVFLKHGS 82 (94)
T ss_pred HHHccCCccceeEEecCccccCcc----ccccceeeccCC
Confidence 455666777788889998755322 222339999984
No 200
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=21.70 E-value=56 Score=22.48 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=11.0
Q ss_pred CccEEEecccccCcccc
Q psy1426 37 GYPVLMLHGLTVSSDCW 53 (64)
Q Consensus 37 ~~pVlL~HGl~~ss~~w 53 (64)
..|.||+||..++..++
T Consensus 11 ~tPTifihG~~gt~~s~ 27 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSF 27 (255)
T ss_dssp -EEEEEE--TTGGCCCC
T ss_pred CCcEEEECCCCCChhHH
Confidence 45899999999887643
No 201
>PRK05092 PII uridylyl-transferase; Provisional
Probab=21.69 E-value=2.3e+02 Score=22.92 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=29.5
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+...+...|..+..-++.|.+++.+.+|.|...
T Consensus 860 I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~ 892 (931)
T PRK05092 860 LTRALSDLNLNIASAHIATYGERAVDVFYVTDL 892 (931)
T ss_pred HHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC
Confidence 567889999999999999999999999999653
No 202
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=21.69 E-value=3e+02 Score=19.35 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHhhcCCcceEEEEe-cCCCcEEEEEEecCCC-Ccc-EEEeccc
Q psy1426 6 MIRFWNYPSEEHKIL-TEDGYILTVFRIPNPG-GYP-VLMLHGL 46 (64)
Q Consensus 6 ~i~~~gy~~e~h~v~-T~DGyiL~l~Ri~~~~-~~p-VlL~HGl 46 (64)
+++.+---++...+. |.+|..|-+.+|..++ .|| |++.-|+
T Consensus 19 L~~~~p~~v~~~~iG~S~eGR~I~~l~is~~~~~kp~v~i~~gi 62 (301)
T cd03870 19 LVAEHPNLVSKLQIGRSYEGRPIYVLKFSTGGSNRPAIWIDAGI 62 (301)
T ss_pred HHHHCCCceEEEecccCCCCCeEEEEEEecCCCCCceEEEeccc
Confidence 333333335555555 7799999999996543 678 7764443
No 203
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=21.51 E-value=60 Score=24.16 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=11.5
Q ss_pred CccEEEecccccCc
Q psy1426 37 GYPVLMLHGLTVSS 50 (64)
Q Consensus 37 ~~pVlL~HGl~~ss 50 (64)
..||+|++|+++|-
T Consensus 19 ~~PViLvPG~~gS~ 32 (440)
T PLN02733 19 LDPVLLVPGIGGSI 32 (440)
T ss_pred CCcEEEeCCCCcce
Confidence 46799999999764
No 204
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.35 E-value=1.7e+02 Score=16.51 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=27.8
Q ss_pred HHHHHhhcCCcceEEEEecCCCcEEEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP 35 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 35 (64)
+...+...|+.+..-+|.|..+.....|-|...
T Consensus 18 i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~ 50 (75)
T cd04897 18 VVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK 50 (75)
T ss_pred HHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC
Confidence 455678899999999999999999999998544
No 205
>PF13786 DUF4179: Domain of unknown function (DUF4179); PDB: 3FBQ_A.
Probab=21.17 E-value=89 Score=17.35 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=21.5
Q ss_pred hcCCcceEEEEecCCCcEEEEEEecCCC
Q psy1426 9 FWNYPSEEHKILTEDGYILTVFRIPNPG 36 (64)
Q Consensus 9 ~~gy~~e~h~v~T~DGyiL~l~Ri~~~~ 36 (64)
..||.-+...-.|.+|+.+++..+-..+
T Consensus 54 ~~~~~~~v~~s~t~~GitvTi~~v~~D~ 81 (94)
T PF13786_consen 54 ENGYSQEVNKSVTDNGITVTINEVIADG 81 (94)
T ss_dssp H-HHSEEEEEEEEETTEEEEEEEEEE-S
T ss_pred hcccccccCcEEEECCEEEEEEEEEEEC
Confidence 3477788888889999999999885543
No 206
>PF02149 KA1: Kinase associated domain 1; InterPro: IPR001772 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. Members of the KIN2/PAR-1/MARK kinase subfamily are conserved from yeast to human and share the same domain organisation: an N-terminal kinase domain (IPR000719 from INTERPRO) and a C-terminal kinase associated domain 1 (KA1). Some members of the KIN1/PAR-1/MARK family also contain an UBA domain (IPR000449 from INTERPRO). Members of this kinase subfamily are involved in various biological processes such as cell polarity, cell cycle control, intracellular signalling, microtubule stability and protein stability []. The function of the KA1 domain is not yet known. Some proteins known to contain a KA1 domain are listed below: Mammalian MAP/microtubule affinity-regulating kinases (MARK 1,2,3). They regulate polarity in neuronal cell models and appear to function redundantly in phosphorylating MT-associated proteins and in regulating MT stability []. Mammalian maternal embryonic leucine zipper kinase (MELK). It phosphorylates ZNF622 and may contribute to its redirection to the nucleus. It may be involved in the inhibition of spliceosome assembly during mitosis. Caenorhabditis elegans and drosophila PAR-1 protein. It is required for establishing polarity in embryos where it is asymmetrically distributed []. Fungal Kin1 and Kin2 protein kinases involved in regulation of exocytosis. They localise to the cytoplasmic face of the plasma membrane []. Plant KIN10 and KIN11 proteins, catalytic subunits of the putative trimeric SNF1-related protein kinase (SnRK) complex. This entry represents the KA1 domain.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3OSE_A 1V5S_A 1UL7_A.
Probab=21.07 E-value=1.4e+02 Score=15.35 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=17.2
Q ss_pred CcceEEEEecCCCcEEEEEEecC
Q psy1426 12 YPSEEHKILTEDGYILTVFRIPN 34 (64)
Q Consensus 12 y~~e~h~v~T~DGyiL~l~Ri~~ 34 (64)
|.+|..++.-.+-|-+.+.||..
T Consensus 7 fEieV~kl~~~~l~Gv~~kRi~G 29 (47)
T PF02149_consen 7 FEIEVCKLPRLGLYGVDFKRISG 29 (47)
T ss_dssp EEEEEEEECCCTCEEEEEEEEES
T ss_pred EEEEEEEecCCCeeEEEEEEeeC
Confidence 45677777777888888888854
No 207
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.91 E-value=1.3e+02 Score=20.74 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=25.8
Q ss_pred CcEEEEEEecCCCCccEEEecccccCcccceec
Q psy1426 24 GYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLR 56 (64)
Q Consensus 24 GyiL~l~Ri~~~~~~pVlL~HGl~~ss~~wv~~ 56 (64)
|..|++.|-|.+-.++-|+|--.-...-.|+..
T Consensus 21 ~RPlsl~R~P~Gi~~~~FfQK~~p~~~P~wv~t 53 (223)
T cd04866 21 DRALTVIRYPHGIRGESFFQKNKPDYAPEFVET 53 (223)
T ss_pred CCCeeeEECCCCCCCCceeeCCCCCCCCCceEE
Confidence 567999999998777778887777777777753
No 208
>PRK04374 PII uridylyl-transferase; Provisional
Probab=20.77 E-value=2.6e+02 Score=22.75 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHhhcCCcceEEEEec-CCCcEEEEEEecCCCCcc
Q psy1426 3 TDDMIRFWNYPSEEHKILT-EDGYILTVFRIPNPGGYP 39 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T-~DGyiL~l~Ri~~~~~~p 39 (64)
+...+..+|+.+-.-+|.| .|||+|..|.+..+.+.+
T Consensus 707 i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~ 744 (869)
T PRK04374 707 IVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA 744 (869)
T ss_pred HHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC
No 209
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=20.60 E-value=77 Score=20.24 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=12.1
Q ss_pred CcceEEEEe-cCCCcEE
Q psy1426 12 YPSEEHKIL-TEDGYIL 27 (64)
Q Consensus 12 y~~e~h~v~-T~DGyiL 27 (64)
|.-++|.|+ ++|||.-
T Consensus 91 w~G~~h~V~V~~dGfey 107 (136)
T PF11149_consen 91 WNGREHEVTVLEDGFEY 107 (136)
T ss_pred ECCEEEEEEEeCCCEEE
Confidence 456788888 8999854
No 210
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=20.58 E-value=1.4e+02 Score=16.65 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCHHHHHhhcCCcceEEEEe
Q psy1426 1 MRTDDMIRFWNYPSEEHKIL 20 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v~ 20 (64)
+++.++++..||+.+...|.
T Consensus 18 ~tv~dLL~~l~~~~~~vav~ 37 (68)
T COG2104 18 TTVADLLAQLGLNPEGVAVA 37 (68)
T ss_pred CcHHHHHHHhCCCCceEEEE
Confidence 36789999999998877665
No 211
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.35 E-value=22 Score=18.96 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=16.9
Q ss_pred HHHHHhhcCCcceEEEEecCC
Q psy1426 3 TDDMIRFWNYPSEEHKILTED 23 (64)
Q Consensus 3 ~~~~i~~~gy~~e~h~v~T~D 23 (64)
+.++++..|.+.+.+.+...+
T Consensus 17 a~~~L~~~gi~~~~~di~~~~ 37 (73)
T cd03027 17 VRLFLREKGLPYVEINIDIFP 37 (73)
T ss_pred HHHHHHHCCCceEEEECCCCH
Confidence 456889999999999887544
No 212
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=20.11 E-value=2.2e+02 Score=17.21 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHHhhcCCcceE------------EEEecCCCcEEEEE
Q psy1426 5 DMIRFWNYPSEE------------HKILTEDGYILTVF 30 (64)
Q Consensus 5 ~~i~~~gy~~e~------------h~v~T~DGyiL~l~ 30 (64)
+.+++.|+++.+ ..+...||++++++
T Consensus 86 ~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~ 123 (153)
T cd07257 86 DYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHY 123 (153)
T ss_pred HHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEE
Confidence 557788888753 25678899999877
No 213
>PRK07440 hypothetical protein; Provisional
Probab=20.02 E-value=1.5e+02 Score=16.29 Aligned_cols=20 Identities=5% Similarity=0.106 Sum_probs=15.2
Q ss_pred CCHHHHHhhcCCcceEEEEe
Q psy1426 1 MRTDDMIRFWNYPSEEHKIL 20 (64)
Q Consensus 1 ~~~~~~i~~~gy~~e~h~v~ 20 (64)
+++.++++..|++.+...|.
T Consensus 20 ~tl~~lL~~l~~~~~~vav~ 39 (70)
T PRK07440 20 TSLPDLLQQLGFNPRLVAVE 39 (70)
T ss_pred CCHHHHHHHcCCCCCeEEEE
Confidence 46789999999987766554
Done!