RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1426
(64 letters)
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part
of an alpha/beta hydrolase domain.
Length = 62
Score = 78.4 bits (194), Expect = 1e-21
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 3 TDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPG-------GYPVLMLHGLTVSSDCWFL 55
T ++IR + YP EEH++ TEDGYILT+ RIP VL+ HGL SS W L
Sbjct: 1 TSELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVL 60
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 62.6 bits (152), Expect = 1e-13
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 5 DMIRFWNYPSEEHKILTEDGYILTVFRIPNPG-------GYPVLMLHGLTVSSDCWFLRT 57
+I Y EH I T+DGY+L + R+ + G PVL+ HGL ++ D WFL +
Sbjct: 35 QLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNS 94
Query: 58 PKEDLG 63
P++ LG
Sbjct: 95 PEQSLG 100
>gnl|CDD|237072 PRK12355, PRK12355, conjugal transfer mating pair stabilization
protein TraN; Reviewed.
Length = 558
Score = 28.6 bits (64), Expect = 0.13
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 34 NPGGYPVLMLHGLTVSSDCW 53
PGG +++G+ V+ DCW
Sbjct: 284 EPGGTRTRVINGIPVTRDCW 303
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 28.1 bits (63), Expect = 0.20
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 6 MIRFWNYPSEEHKILTEDGYILT 28
M +WN P E K++T DG+ T
Sbjct: 417 MAGYWNRPDETAKVMTADGFFRT 439
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only].
Length = 282
Score = 26.9 bits (58), Expect = 0.70
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 30 FRIPNPGGYPVLMLHGLTVSSDCWFLRTP 58
+R GG P+++LHG SS W
Sbjct: 14 YREAGGGGPPLVLLHGFPGSSSVWRPVFK 42
>gnl|CDD|214006 cd12807, Esterase_713, Novel bacterial esterase 713 that cleaves
esters on halogenated cyclic compounds. This family
contains proteins similar to a novel bacterial esterase
(esterase 713) with the alpha/beta hydrolase fold that
cleaves esters on halogenated cyclic compounds. This
Alcaligenes esterase, however, does not contain the
GXSXXG pentapeptide around the active site serine
residue as seen in other esterase families. This enzyme
is active as a dimer though its natural substrate is
unknown. It has two distinct disulfide bridges; one
formed between adjacent cysteines appears to facilitate
the correct formation of the oxyanion cleft in the
catalytic site. Esterase 713 also resembles human
pancreatic lipase in its location of the acidic residue
of the catalytic triad. It is possibly exported from
the cytosol to the periplasmic space. A large majority
of sequences in this family have yet to be
characterized.
Length = 315
Score = 26.5 bits (59), Expect = 0.83
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 30 FRIP--NPGGYPVLMLHGLTVSSDCW 53
++IP YP++++HG ++ W
Sbjct: 44 YQIPQKGKKKYPIVLVHGCCLTGKTW 69
>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain.
Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin
homology domain-containing family K) is an actin
binding protein involved in cytokinesis. It interacts
with GTP-bound Rho proteins and results in the
inhibition of their GTPase activity. Dysregulation of
the Rho signal transduction pathway has been implicated
in many forms of cancer. Anillin proteins have a
N-terminal HRI domain/ACC (anti-parallel coiled-coil)
finger domain or Rho-binding domain binds small GTPases
from the Rho family. The C-terminal PH domain helps
target anillin to ectopic septin containing foci. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from
other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 119
Score = 26.1 bits (58), Expect = 0.93
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 5 DMIRFWNYPSEEHK 18
+ FW YP +E K
Sbjct: 30 GYLSFWKYPEDEEK 43
>gnl|CDD|224855 COG1944, COG1944, Uncharacterized conserved protein [Function
unknown].
Length = 398
Score = 26.2 bits (58), Expect = 0.93
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 20 LTEDGYILTVFRIPNPGGYPVLM-------LHGLTVSSDC 52
L +G+ +T++ + GG PV+ L L
Sbjct: 224 LEAEGFPVTLWDATSDGGVPVVAAVLFDAALGLLFAGFGA 263
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 26.1 bits (58), Expect = 1.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 23 DGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
DG L V+ +P V+++HG + + W
Sbjct: 11 DGVRLAVYEWGDPDRPTVVLVHGYPDNHEVW 41
>gnl|CDD|214009 cd12810, Esterase_713_like-3, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other
esterase and lipase enzymes. It is active as a dimer
and cleaves esters on halogenated cyclic compounds
though its natural substrate is unknown.
Length = 328
Score = 26.0 bits (58), Expect = 1.2
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 30 FRIP-NPGGYPVLMLHGLTVSSDCW 53
++IP N P++ LHG S W
Sbjct: 45 YQIPVNARKLPLVFLHGAGQSGKTW 69
>gnl|CDD|219287 pfam07075, DUF1343, Protein of unknown function (DUF1343). This
family consists of several hypothetical bacterial
proteins of around 400 residues in length. The function
of this family is unknown.
Length = 362
Score = 25.6 bits (57), Expect = 1.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 36 GGYPVLMLHGLTV 48
G YP+ + HG+T+
Sbjct: 141 GMYPIPVRHGMTI 153
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 25.4 bits (56), Expect = 2.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 33 PNPGGYPVLMLHGLTVSSDCW 53
P G PVLM+H + +S+D W
Sbjct: 63 QPPVGPPVLMVHPMMMSADMW 83
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This
family contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 25.1 bits (55), Expect = 2.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 40 VLMLHGLTVSSDCW 53
V++LHG S++ W
Sbjct: 1 VVLLHGAGGSAESW 14
>gnl|CDD|225577 COG3034, COG3034, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 298
Score = 24.3 bits (53), Expect = 4.4
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 35 PGGYPVLMLHGLTVSSDCW 53
GG +M+HG +S C+
Sbjct: 137 TGGG--IMIHGACLSDGCY 153
>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase,
Neisseria-type subfamily. This model represents one of
two related families of proline iminopeptidase in the
alpha/beta fold hydrolase family. The fine
specificities of the various members, including both
the range of short peptides from which proline can be
removed and whether other amino acids such as alanine
can be also removed, may vary among members.
Length = 306
Score = 24.4 bits (53), Expect = 4.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 34 NPGGYPVLMLHG 45
NP G PV+ LHG
Sbjct: 24 NPDGKPVVFLHG 35
>gnl|CDD|218168 pfam04602, Arabinose_trans, Mycobacterial cell wall arabinan
synthesis protein. Arabinosyltransferase is involved in
arabinogalactan (AG) biosynthesis pathway in
mycobacteria. AG is a component of the macromolecular
assembly of the mycolyl-AG-peptidoglycan complex of the
cell wall. This enzyme has important clinical
applications as it is believed to be the target of the
antimycobacterial drug Ethambutol.
Length = 1075
Score = 24.4 bits (53), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 21 TEDGYILTVFRIPNPGGY 38
++DGYILT+ R+ GY
Sbjct: 264 SDDGYILTMARVAEHAGY 281
>gnl|CDD|216222 pfam00972, Flavi_NS5, Flavivirus RNA-directed RNA polymerase.
Flaviviruses produce a polyprotein from the ssRNA
genome. This protein is also known as NS5. This
RNA-directed RNA polymerase possesses a number of short
regions and motifs homologous to other RNA-directed RNA
polymerases.
Length = 649
Score = 24.0 bits (52), Expect = 6.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1 MRTDDMIRFWN 11
M T+DM+ WN
Sbjct: 557 MTTEDMLEVWN 567
>gnl|CDD|179147 PRK00870, PRK00870, haloalkane dehalogenase; Provisional.
Length = 302
Score = 23.8 bits (52), Expect = 7.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 1 MRTDDMIRFWN---YPSEEHKILTEDGY--ILTVFRIPN--PGGYPVLMLHG 45
+RT D RF N YP H + +DG L + + G PVL+LHG
Sbjct: 4 LRTPDS-RFENLPDYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHG 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.144 0.481
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,364,418
Number of extensions: 240851
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 18
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)