RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1426
(64 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 77.7 bits (191), Expect = 3e-19
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 1 MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP--------GGYPVLMLHGLTVSSDC 52
M MI +W YP+EE++++TEDGYIL + RIP + HGL S+
Sbjct: 14 MNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATN 73
Query: 53 WFLRTPKEDLG 63
W P L
Sbjct: 74 WISNLPNNSLA 84
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A*
1tcb_A* 1tcc_A*
Length = 317
Score = 35.5 bits (81), Expect = 3e-04
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 32 IPNPGGYPVLMLHGLTVSSDCWFLRTPKEDLGR 64
P+ P+L++ G + F +
Sbjct: 26 SPSSVSKPILLVPGTGTTGPQSFDSNWIPLSTQ 58
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 34.4 bits (78), Expect = 7e-04
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 32 IPNPGGYPVLMLHGLTVSSDCWFLRTPKEDLGR 64
P+ P+L++ G + F +
Sbjct: 60 SPSSVSKPILLVPGTGTTGPQSFDSNWIPLSAQ 92
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 32.2 bits (74), Expect = 0.004
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 19 ILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ T DG + G PV+ HG +S+D W
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDW 37
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 32.3 bits (74), Expect = 0.005
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 4 DDMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
++ + W + I T V P+++LHG SS W+
Sbjct: 35 NESLSLWPVRCKSFYIST-RFGQTHVIASGPEDAPPLVLLHGALFSSTMWY 84
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 30.7 bits (70), Expect = 0.015
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 19 ILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ T+DG + + HG +S+D W
Sbjct: 4 VTTKDGVQIFYKDWGPRDAPVIHFHHGWPLSADDW 38
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 30.1 bits (68), Expect = 0.025
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
++ ++ R V+ LHG ++ W
Sbjct: 58 NGPLPEVERVQAGAISALRWGGSAP-RVIFLHGGGQNAHTW 97
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 30.0 bits (68), Expect = 0.029
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 30 FRIPNPGGYPVLMLHGLTVSSDCW 53
F P V+++HGL S W
Sbjct: 9 FAKPTARTPLVVLVHGLLGSGADW 32
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics,
PSI, protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 29.5 bits (67), Expect = 0.036
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 35 PGGYPVLMLHGLTVSSDCW 53
G +++LHG ++++ W
Sbjct: 11 QGNVHLVLLHGWGLNAEVW 29
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 29.7 bits (67), Expect = 0.038
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G +L HG+T +S +
Sbjct: 68 GPLMLFFHGITSNSAVF 84
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 29.7 bits (67), Expect = 0.040
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ H+ L D + + + G +L+L G +
Sbjct: 3 DTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVY 43
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.12
Length = 273
Score = 29.2 bits (66), Expect = 0.052
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G P++ HG +++D W
Sbjct: 19 GQPIVFSHGWPLNADSW 35
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus
oeni}
Length = 272
Score = 29.3 bits (66), Expect = 0.053
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G P++ LHGL++
Sbjct: 21 GTPIIFLHGLSLDKQST 37
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 29.2 bits (66), Expect = 0.056
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PVL HG + +D W
Sbjct: 19 GKPVLFSHGWLLDADMW 35
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET:
MSE; 1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 28.9 bits (65), Expect = 0.060
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 13 PSEEHKILTEDGYILTVFRIP-NPGGYPVLMLHGLTVSSDCW 53
E+ + DG L + PVL L GLT ++ +
Sbjct: 4 EYEDRYWTSSDGLRLHFRAYEGDISRPPVLCLPGLTRNARDF 45
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 29.0 bits (64), Expect = 0.063
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45
+ + T DG+ + NP G P + +HG
Sbjct: 13 AYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHG 45
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 28.9 bits (65), Expect = 0.069
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+ +HG ++ D W
Sbjct: 19 GRPVVFIHGWPLNGDAW 35
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 28.5 bits (64), Expect = 0.081
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG + W
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design,
bionanotechnology; 3.00A {Streptomyces aureofaciens}
PDB: 4d9j_A
Length = 456
Score = 28.6 bits (64), Expect = 0.089
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG +S W
Sbjct: 24 GVPVVLIHGFPLSGHSW 40
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 28.6 bits (63), Expect = 0.090
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45
P ++ + +D + L + NP G PV+MLHG
Sbjct: 10 PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHG 42
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 28.5 bits (64), Expect = 0.092
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG +S W
Sbjct: 27 GKPVVLIHGWPLSGRSW 43
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 28.5 bits (64), Expect = 0.10
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 13 PSEEHKILTEDG---YILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
P + D +T P P+++LHG + +
Sbjct: 27 PVSSRTVPFGDHETWVQVTTPENAQPHALPLIVLHGGPGMAHNYV 71
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 28.4 bits (64), Expect = 0.11
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 34 NPGGYPVLMLHGLTVSSDCW 53
++ LHG S +
Sbjct: 13 VETNQVLVFLHGFLSDSRTY 32
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 28.2 bits (63), Expect = 0.12
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 38 YPVL-MLHGLTVSSDCWFLRTPKEDL 62
Y VL +LHG+ S + WF + ++
Sbjct: 62 YSVLYLLHGIGGSENDWFEGGGRANV 87
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 28.1 bits (63), Expect = 0.13
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 16 EHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
E K L G + + +P VL +HG+ W
Sbjct: 5 EEKFLEFGGNQICLCSWGSPEHPVVLCIHGILEQGLAW 42
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 28.3 bits (62), Expect = 0.13
Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 11 NYPSEEHKILTEDGYILT------VFRIPNPGGYPVLMLHGLTVSSDCWFLRTPK 59
+ + + G+ PV+ +HG ++ + +
Sbjct: 8 GFVCKGTQTQYAGGFAPGVGYGGFGGGSCTATKTPVIFIHGNGDNAISFDMPPGN 62
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 28.1 bits (62), Expect = 0.15
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 8 RFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45
+ P+ + L EDG V G PV +L G
Sbjct: 177 EYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQG 214
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 28.0 bits (62), Expect = 0.16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 33 PNPGGYPVLMLHGLTVSSDCW 53
+ VL+LHG+ SS+ W
Sbjct: 28 SGQARFSVLLLHGIRFSSETW 48
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 28.0 bits (63), Expect = 0.16
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG +S W
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 27.8 bits (61), Expect = 0.16
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 8 RFWNYPSEEHKILTEDGYI-LTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
+ ++ H + T G + TV+ P P + H + ++ F
Sbjct: 5 KIHHHHHHTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCF 52
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 27.9 bits (62), Expect = 0.17
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 10 WNYPSEEHKI-LTEDGYILTV----FRIPNPGGYPVLMLHGLTVSSDCW 53
++Y H + T G L++ G +L++HG + W
Sbjct: 14 FDYAYPVHYLDFTSQGQPLSMAYLDVAPKKANGRTILLMHGKNFCAGTW 62
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.8 bits (62), Expect = 0.18
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
P++++HGL S D
Sbjct: 16 NSPIVLVHGLFGSLDNL 32
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 27.8 bits (62), Expect = 0.19
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 23 DGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+G ++T +P + +L G +
Sbjct: 7 NGTLMTYSESGDPHAPTLFLLSGWCQDHRLF 37
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 27.6 bits (60), Expect = 0.20
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 31 RIPNPGGYPVLMLHGLTVSSDCW 53
PV+ +HGL S+ +
Sbjct: 16 VAAAEDFRPVVFVHGLAGSAGQF 38
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein
structure initiative, PSI-2, structural midwest center
for structural genomics, MCSG; HET: MSE PG4; 1.65A
{Bacillus anthracis}
Length = 278
Score = 27.7 bits (62), Expect = 0.21
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 37 GYPVLMLHGLTVSSDCWF 54
G P+ + H + +D
Sbjct: 23 GPPLCVTHLYSEYNDNGN 40
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET:
KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A*
2wuf_A* 2wug_A* 2vf2_A
Length = 291
Score = 27.3 bits (61), Expect = 0.23
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
S ++ + L V++LHG + W
Sbjct: 12 TSRFAEVDVDGPLKLHYHEAGVGNDQTVVLLHGGGPGAASW 52
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 27.3 bits (61), Expect = 0.28
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 35 PGGYPVLMLHGLTVSSDCW 53
G V++LHG + W
Sbjct: 34 QGDETVVLLHGSGPGATGW 52
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 27.1 bits (60), Expect = 0.28
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 34 NPGGYPVLMLHGLTVSSDCW 53
+P +L++ G +S+ W
Sbjct: 20 DPADPALLLVMGGNLSALGW 39
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 26.7 bits (59), Expect = 0.35
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 16 EHKILTEDGYILTVFR-IPNPGGYPVLMLHGLTVSSDCW 53
+ + + +G + + + + + + HG + +S W
Sbjct: 5 QEEFIDVNGTRVFQRKMVTDSNRRSIALFHGYSFTSMDW 43
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 26.6 bits (59), Expect = 0.38
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
PV+M+HG+ +S +
Sbjct: 3 HNPVVMVHGIGGASFNF 19
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A*
3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 26.5 bits (59), Expect = 0.55
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G V+MLHG + W
Sbjct: 33 GETVIMLHGGGPGAGGW 49
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat
hydrolase); PCB degradation; 2.40A {Rhodococcus SP}
SCOP: c.69.1.10
Length = 285
Score = 26.1 bits (58), Expect = 0.64
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
K +P V++LHG +
Sbjct: 5 VEIIEKRFPSGTLASHALVAGDPQSPAVVLLHGAGPGAHAA 45
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
genomics/proteomi initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.124.1.6
Length = 184
Score = 26.0 bits (58), Expect = 0.66
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 13 PSEEH-----KILTEDGYILTVFRIPNPGGYP 39
P + + TE G P PGG
Sbjct: 152 PRDPWDVPVDHLATEAGVEAVKRPAPGPGGLL 183
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 26.2 bits (58), Expect = 0.66
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++ G +
Sbjct: 23 GPPVVLVGGALSTRAGG 39
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 26.3 bits (58), Expect = 0.67
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 35 PGGYPVLMLHGLTVSSDCW 53
G +L+LHG S+ W
Sbjct: 36 SEGPVLLLLHGGGHSALSW 54
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 26.1 bits (57), Expect = 0.73
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGL 46
P + +T+D Y R G ++LHG
Sbjct: 39 PFRKDTPMTKDSYF-HKSRAGVAGAPLFVLLHGT 71
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 25.8 bits (57), Expect = 0.86
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+ + G + W
Sbjct: 43 GDPVVFIAGRGGAGRTW 59
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 25.7 bits (57), Expect = 0.92
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 35 PGGYPVLMLHGLTVSSDCW 53
V+++ GL S W
Sbjct: 13 ADAPVVVLISGLGGSGSYW 31
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 25.9 bits (56), Expect = 0.93
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 33 PNPGGYPVLMLHGLTVSSDCW 53
++ LHG +S W
Sbjct: 48 RTATRLNLVFLHGSGMSKVVW 68
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 25.5 bits (56), Expect = 1.0
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 1 MRTDDMIRFWN---YPSEEHKILTEDGYI-LTVFRI---PNPGGYPVLMLHGLTVSSDCW 53
+RT D RF + +P H + G+ L + + P + L LHG S +
Sbjct: 4 VRTPDD-RFADLPDFPYAPHYLEGLPGFEGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLY 62
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 25.7 bits (57), Expect = 1.1
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 36 GGYPVLMLHGLTVSSDCW 53
G VL+ HG + W
Sbjct: 27 GEKTVLLAHGFGCDQNMW 44
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 25.3 bits (56), Expect = 1.1
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ T DG L + + + + + W
Sbjct: 3 AGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMW 43
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 25.4 bits (56), Expect = 1.3
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 1 MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ + I + + + + G G PV+++HG ++
Sbjct: 2 LNKAEQISEKSERAYVERFVNAGGVETRYLEAGK--GQPVILIHGGGAGAESE 52
>1y8t_A Hypothetical protein RV0983; serine protease, structural
genomics, PSI, protein structure initiative; 2.00A
{Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1
PDB: 2z9i_A
Length = 324
Score = 25.3 bits (56), Expect = 1.4
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 19 ILTEDGYILT 28
IL+ +G ILT
Sbjct: 37 ILSAEGLILT 46
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 25.2 bits (55), Expect = 1.5
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 11 NYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGL 46
E +LT+ + + + +LHG
Sbjct: 4 GDGIENSPLLTDLAFPYRLLGAGKESRECLFLLHGS 39
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 25.0 bits (54), Expect = 1.8
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 38 YPVLMLHGLTVSSDCWFL 55
YP+++ HG+ + +
Sbjct: 8 YPIVLAHGMLGFDNILGV 25
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 25.0 bits (55), Expect = 1.8
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 36 GGYPVLMLHGLTVSSDCW 53
+L +HG + +
Sbjct: 15 SPNTLLFVHGSGCNLKIF 32
>1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta
hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB:
2wkw_A*
Length = 328
Score = 24.9 bits (53), Expect = 2.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 30 FRIP-NPGGYPVLMLHGLTVSSDCWFLRTP 58
++IP YP+ ++HG ++ W TP
Sbjct: 54 YQIPQRAKRYPITLIHGCCLTGMTWE-TTP 82
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 24.6 bits (54), Expect = 2.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 37 GYPVLMLHGLTVSSDCWF 54
G PV+++HG +
Sbjct: 25 GQPVILIHGSGPGVSAYA 42
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus
thermophilus}
Length = 286
Score = 24.7 bits (54), Expect = 2.4
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 34 NPGGYPVLMLHGLTVSSDCWFLR 56
G + +LHG +
Sbjct: 22 PVEGPALFVLHGGPGGNAYVLRE 44
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 24.4 bits (52), Expect = 2.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 33 PNPGGYPVLMLHGLTVSSDCW 53
PV+++HGL SS +
Sbjct: 32 HRASYKPVIVVHGLFDSSYSF 52
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol
metabolism; 1.90A {Burkholderia xenovorans}
Length = 266
Score = 24.1 bits (53), Expect = 3.1
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 33 PNPGGYPVLMLHGLTVSSDCW 53
+ +++ + L W
Sbjct: 22 RHGNAPWIVLSNSLGTDLSMW 42
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 24.2 bits (53), Expect = 3.1
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 19 ILTEDGYILT 28
I++EDG I+T
Sbjct: 52 IVSEDGLIVT 61
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 24.0 bits (52), Expect = 3.8
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 5 DMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
MI + K + + + V+ LHG SS W
Sbjct: 12 RMITGPQWW-ARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLW 59
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB,
haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene
dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP:
c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A*
1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 24.0 bits (52), Expect = 3.8
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 12 YPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
P E K + G + I G P+L HG SS W
Sbjct: 6 KPFGEKKFIEIKG--RRMAYIDEGTGDPILFQHGNPTSSYLW 45
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel,
channel, transcription; 2.40A {Saccharomyces cerevisiae}
PDB: 2hzs_B 3rj1_E
Length = 317
Score = 24.1 bits (51), Expect = 3.9
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 8 RFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHG 45
+ W + +T G++L + + G + +
Sbjct: 233 KIWQIEEAGNSQITSGGFLLKAYINVSRGTDIDRINYT 270
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 24.0 bits (52), Expect = 4.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 29 VFRIPNPGGYPVLMLHGL 46
VF+ P+L+LH
Sbjct: 8 VFKAGRKDLAPLLLLHST 25
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 23.9 bits (51), Expect = 5.2
Identities = 5/9 (55%), Positives = 9/9 (100%)
Query: 38 YPVLMLHGL 46
YP++++HGL
Sbjct: 9 YPIILVHGL 17
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 23.6 bits (51), Expect = 5.7
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 18 KILTEDGYILTVFRIPNPGGYPVLMLHG 45
L ++ + PV ++HG
Sbjct: 188 GFYLRIAQQLPIYEVSAQFTKPVCLIHG 215
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 23.5 bits (51), Expect = 5.9
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 12 YPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
P + K L G + I G ++ HG SS W
Sbjct: 5 EPYGQPKYLEIAG--KRMAYIDEGKGDAIVFQHGNPTSSYLW 44
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A
{Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A*
1y8z_A*
Length = 401
Score = 23.6 bits (50), Expect = 6.1
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 5 DMIRFWNYPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSS 50
D++ + P+ + T + Y + I V+ H +V S
Sbjct: 77 DILIINSVPATSVQEATINNYKKLLDNIKPS-IRVVVYQHDHSVLS 121
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics
center for structural genomics, JCSG, protein structure
INI PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 23.4 bits (50), Expect = 6.2
Identities = 5/14 (35%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 33 PNPGGYPVL-MLHG 45
+ YPV+ +L G
Sbjct: 38 QSLEAYPVVYLLDG 51
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 23.3 bits (50), Expect = 6.8
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 28 TVFRIPNP-----GGYPVLMLHGLTVSSDCW 53
++FR P P V++LH T S +
Sbjct: 8 SIFRKPQPFEYEGTDTGVVLLHAYTGSPNDM 38
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 23.2 bits (50), Expect = 8.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 30 FRIPNPGGYPVLMLHGLTVSS 50
F G VL+LHG T +S
Sbjct: 10 FFFEA-GERAVLLLHGFTGNS 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.144 0.481
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,060,511
Number of extensions: 49218
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 80
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)