RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1426
(64 letters)
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 72.8 bits (177), Expect = 8e-18
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 1 MRTDDMIRFWNYPSEEHKILTEDGYILTVFRIPNP--------GGYPVLMLHGLTVSSDC 52
M MI +W YP+EE++++TEDGYIL + RIP + HGL S+
Sbjct: 14 MNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATN 73
Query: 53 WFLRTPKEDLGR 64
W P L
Sbjct: 74 WISNLPNNSLAF 85
>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas
campestris, pv. citri [TaxId: 339]}
Length = 313
Score = 35.9 bits (81), Expect = 9e-05
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLRTP 58
P ++ + +D + L + NP G PV+MLHG +R
Sbjct: 10 PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMRRF 55
>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens
[TaxId: 615]}
Length = 313
Score = 35.6 bits (80), Expect = 1e-04
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 13 PSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWFLRTP 58
+ + T DG+ + NP G P + +HG R
Sbjct: 10 AYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHRQL 55
>d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans
[TaxId: 1916]}
Length = 275
Score = 31.1 bits (68), Expect = 0.005
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 19 ILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ T DG + G PV+ HG +S+D W
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDW 37
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
[TaxId: 1831]}
Length = 291
Score = 31.0 bits (68), Expect = 0.006
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 16 EHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
+ + G + + G PVL LHG SS W
Sbjct: 8 DPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 45
>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes
sp. [TaxId: 512]}
Length = 318
Score = 29.0 bits (63), Expect = 0.024
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 30 FRIP-NPGGYPVLMLHGLTVSSDCWF 54
++IP YP+ ++HG ++ W
Sbjct: 50 YQIPQRAKRYPITLIHGCCLTGMTWE 75
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 28.9 bits (64), Expect = 0.024
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 33 PNPGGYPVLMLHGLTVSSDCWFLRTPKEDLGR 64
P+ P+L++ G + F +
Sbjct: 27 PSSVSKPILLVPGTGTTGPQSFDSNWIPLSTQ 58
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 28.7 bits (62), Expect = 0.032
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 17 HKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
+I+ L +P +L++ G +S+ W
Sbjct: 2 ERIVPSGDVELWSDDFGDPADPALLLVMGGNLSALGWP 39
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas
paucimobilis, UT26, LinB [TaxId: 13689]}
Length = 298
Score = 28.3 bits (61), Expect = 0.040
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 12 YPSEEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
P E K + G + G P+L HG SS W
Sbjct: 5 KPFGEKKFIEIKGRRMAYIDEGT--GDPILFQHGNPTSSYLW 44
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase
{Vibrio harveyi [TaxId: 669]}
Length = 302
Score = 28.0 bits (61), Expect = 0.056
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 14 SEEHKILTEDGYILTVFRIPNPGGYP-----VLMLHGLTVSSDCW 53
+ H + +G L V+ P P +L+ G D +
Sbjct: 4 TIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHF 48
>d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 27.7 bits (60), Expect = 0.066
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 33 PNPGGYPVLMLHGLTVSSDCW 53
+ VL+LHG+ SS+ W
Sbjct: 27 SGQARFSVLLLHGIRFSSETW 47
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio
cholerae [TaxId: 666]}
Length = 264
Score = 27.9 bits (60), Expect = 0.070
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 30 FRIPNPGGYPVLMLHGLTVSSDCW 53
F P V+++HGL S W
Sbjct: 9 FAKPTARTPLVVLVHGLLGSGADW 32
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId:
287]}
Length = 285
Score = 27.1 bits (59), Expect = 0.13
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 38 YPVLMLHGLTVSSDCWFL 55
YP+++ HG+ + +
Sbjct: 8 YPIVLAHGMLGFDNILGV 25
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 26.6 bits (57), Expect = 0.16
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 39 PVLMLHGLTVSSDCW 53
PV+++HGL SS +
Sbjct: 4 PVIVVHGLFDSSYSF 18
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 26.4 bits (56), Expect = 0.22
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 17 HKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
K +P V++LHG +
Sbjct: 6 EKRFPSGTLASHALVAGDPQSPAVVLLHGAGPGAHAA 42
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 26.3 bits (57), Expect = 0.22
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 38 YPVLMLHGLTVSSDCW 53
YPV+++HGL +
Sbjct: 9 YPVILVHGLAGTDKFA 24
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 26.0 bits (56), Expect = 0.25
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
PV+M+HG+ +S +
Sbjct: 2 HNPVVMVHGIGGASFNF 18
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 25.8 bits (55), Expect = 0.30
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 20 LTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
+T+D Y R G ++LHG + +F
Sbjct: 1 MTKDSYF-HKSRAGVAGAPLFVLLHGTGGDENQFF 34
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.0 bits (55), Expect = 0.33
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 30 FRIPNPGGYPVLMLHGLTVSSDCW 53
++ G +++LHG ++++ W
Sbjct: 4 WQTKGQGNVHLVLLHGWGLNAEVW 27
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 25.6 bits (54), Expect = 0.38
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G V+MLHG + W
Sbjct: 30 GETVIMLHGGGPGAGGW 46
>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2)
{Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 258
Score = 25.7 bits (54), Expect = 0.39
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G +++HG W
Sbjct: 2 GKHFVLVHGACHGGWSW 18
>d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 274
Score = 25.6 bits (54), Expect = 0.48
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+ +HG ++ D W
Sbjct: 19 GRPVVFIHGWPLNGDAW 35
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 310
Score = 25.3 bits (53), Expect = 0.51
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 2 RTDDMIRFWN---YPSEEH---KILTEDGYILTVFRIPNPGGYP-VLMLHGLTVSSDCW 53
RT D RF N YP + + G N L LHG S +
Sbjct: 6 RTPD-QRFSNLDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLY 63
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 277
Score = 25.2 bits (53), Expect = 0.52
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG +S W
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 25.2 bits (53), Expect = 0.53
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G V + HG S W
Sbjct: 32 GPAVCLCHGFPESWYSW 48
>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp.
[TaxId: 51671]}
Length = 279
Score = 25.3 bits (53), Expect = 0.58
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG + W
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
>d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas
fluorescens [TaxId: 294]}
Length = 273
Score = 25.3 bits (53), Expect = 0.61
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G P++ HG +++D W
Sbjct: 19 GQPIVFSHGWPLNADSW 35
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 271
Score = 24.9 bits (52), Expect = 0.73
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PVL HG + +D W
Sbjct: 19 GKPVLFSHGWLLDADMW 35
>d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium
radiobacter [TaxId: 358]}
Length = 293
Score = 24.1 bits (50), Expect = 1.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G +L+LHG W
Sbjct: 28 GPTLLLLHGWPGFWWEW 44
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 24.1 bits (50), Expect = 1.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 36 GGYPVLMLHGLTVSSDCW 53
G VL+LHG T +S
Sbjct: 10 GERAVLLLHGFTGNSADV 27
>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD
{Pseudomonas fluorescens [TaxId: 294]}
Length = 271
Score = 24.0 bits (50), Expect = 1.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 37 GYPVLMLHGLTVSSDCW 53
G PV+++HG +
Sbjct: 23 GQPVILIHGSGPGVSAY 39
>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 23.9 bits (50), Expect = 1.7
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 15 EEHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
E +LT+ + + + +LHG V
Sbjct: 1 ENSPLLTDLAFPYRLLGAGKESRECLFLLHGSGVDETTLV 40
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 286
Score = 24.0 bits (50), Expect = 1.8
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 19 ILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCW 53
++ +G L P+ ++H + S+ +
Sbjct: 7 LVNPEGPTLMRLNSVQSSERPLFLVHPIEGSTTVF 41
>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 280
Score = 23.7 bits (50), Expect = 2.0
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 35 PGGYPVL-MLHGLTVSSDC--WFLRTPKEDL 62
GG + +L GL D W + TP +
Sbjct: 26 GGGPHAVYLLDGLRAQDDYNGWDINTPAFEE 56
>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 290
Score = 23.7 bits (49), Expect = 2.3
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 23 DGYILTVFRIPNPGGYP-VLMLHGLTVSSDCWF 54
+G + P ++ +HG S +
Sbjct: 10 NGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYL 42
>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 267
Score = 23.3 bits (49), Expect = 2.4
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 2/36 (5%)
Query: 31 RIPNPGGYPVLMLHGLTVSSDC--WFLRTPKEDLGR 64
G + V +L D W +
Sbjct: 21 AFLAGGPHAVYLLDAFNAGPDVSNWVTAGNAMNTLA 56
>d3lkfa_ f.6.1.1 (A:) Leukocidin F (HlgB) {Staphylococcus aureus
[TaxId: 1280]}
Length = 299
Score = 23.3 bits (50), Expect = 2.6
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 9 FWN--YPSEEHKILTEDGYILTVFRIPNPGGY 38
F ++ +L G I + F PNP Y
Sbjct: 40 FIKDKSYDKDTLVLKATGNINSGFVKPNPNDY 71
>d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC
{Janthinobacterium sp. J3 [TaxId: 213804]}
Length = 268
Score = 23.3 bits (48), Expect = 2.6
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 16 EHKILTEDGYILTVFRIPNPGGYPVLMLHGLTVSSDCWF 54
+ + G G PV+++HG ++
Sbjct: 3 VERFVNAGGVETRYLEAGK--GQPVILIHGGGAGAESEG 39
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 22.0 bits (47), Expect = 6.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 20 LTEDGYILTVFRIPNPGGYPVLMLH 44
L D + T F P GG P+L H
Sbjct: 209 LLTDRNLNTTFFDPAGGGDPILYQH 233
>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI,
N-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 171
Score = 22.1 bits (47), Expect = 6.6
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 20 LTEDGYILTVFRIPNPGGYP 39
+ + GG P
Sbjct: 152 IRSGYSYIMCDERMGAGGLP 171
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 22.2 bits (47), Expect = 6.8
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 35 PGGYPVLMLHGLTVSSDCWF 54
P P+++ HG+ S
Sbjct: 3 PAPLPLVIWHGMGDSCCNPL 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.144 0.481
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,271
Number of extensions: 10123
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 45
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)