BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14260
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHR 65
K ++ + + + ITVFE++L+ T W +SI NK+ + E I N P IH H
Sbjct: 281 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 340
Query: 66 QKQP 69
Q+QP
Sbjct: 341 QRQP 344
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHR 65
K ++ + + + ITVFE++L+ T W +SI NK+ + E I N P IH H
Sbjct: 238 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297
Query: 66 QKQP 69
Q+QP
Sbjct: 298 QRQP 301
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
+ +VK + + + +T+FE+ L+ T W SI+ NKY + I ++ P IH + +
Sbjct: 198 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 257
Query: 66 QKQPD 70
Q+QP+
Sbjct: 258 QRQPN 262
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSD 46
+VLV+ + +++ T+ + ++ T W+ +SI RV+K +++
Sbjct: 506 RVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE 545
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
+ +VK + + + +T+FE+ L+ T W SI+ NKY + I ++ P IH + +
Sbjct: 198 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 257
Query: 66 QKQPD 70
Q+QP+
Sbjct: 258 QRQPN 262
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
+ +VK + + + +T+FE+ L+ T W SI+ NKY + I ++ P IH + +
Sbjct: 206 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 265
Query: 66 QKQPD 70
Q+QP+
Sbjct: 266 QRQPN 270
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSD 46
+VLV+ + +++ T+ + ++ T W+ +SI RV+K +++
Sbjct: 514 RVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE 553
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYHR 65
+ +VK + + + +T+FE+ L+ T W SI+ NKY + I ++ P IH + +
Sbjct: 201 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 260
Query: 66 QKQPD 70
Q+QP+
Sbjct: 261 QRQPN 265
>pdb|3F5R|A Chain A, The Crystal Structure Of A Subunit Of The Heterodimeric
Fact Complex (Spt16p-Pob3p)
Length = 191
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 33 RNQSIIRVNKYNSDDYETIAN-FSRPFAIHIYHRQ 66
+NQ +I+++ ++ DDY I N F R F I + R+
Sbjct: 92 KNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQRE 126
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 6 NKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYH 64
N+ ++ + + + +T +++ ++ T W +SI R NK + + I + I ++H
Sbjct: 199 NREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFH 258
Query: 65 RQKQ 68
+Q
Sbjct: 259 SSRQ 262
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 6 NKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYH 64
N+ ++ + + + +T +++ ++ T W +SI R NK + + I + I ++H
Sbjct: 204 NREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFH 263
Query: 65 RQKQ 68
+Q
Sbjct: 264 SSRQ 267
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 6 NKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI-ANFSRPFAIHIYH 64
N+ ++ + + + +T +++ ++ T W +SI R NK + + I + I ++H
Sbjct: 197 NREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFH 256
Query: 65 RQKQ 68
+Q
Sbjct: 257 SSRQ 260
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 14 VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYET 50
+Q + +T + NL+ T W+ S+I ++ S + +T
Sbjct: 208 LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDT 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,156,571
Number of Sequences: 62578
Number of extensions: 66425
Number of successful extensions: 131
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 16
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)