Query psy14260
Match_columns 73
No_of_seqs 108 out of 877
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:28:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 99.2 1.2E-11 2.6E-16 87.0 4.4 63 2-65 1186-1250(1289)
2 KOG1215|consensus 99.1 4.3E-10 9.3E-15 79.8 8.3 72 1-73 597-671 (877)
3 PF00058 Ldl_recept_b: Low-den 99.1 5.5E-10 1.2E-14 52.6 6.0 39 25-64 1-42 (42)
4 KOG1214|consensus 98.9 5.9E-09 1.3E-13 73.9 5.7 66 1-67 1097-1168(1289)
5 smart00135 LY Low-density lipo 98.8 6.4E-08 1.4E-12 44.7 5.7 38 9-47 3-42 (43)
6 KOG1215|consensus 98.4 3.1E-07 6.7E-12 65.5 4.7 51 19-72 73-124 (877)
7 PF00058 Ldl_recept_b: Low-den 98.4 6.8E-07 1.5E-11 41.9 3.6 23 1-23 19-41 (42)
8 PF01436 NHL: NHL repeat; Int 94.8 0.12 2.5E-06 21.8 3.8 25 15-39 2-27 (28)
9 PF03088 Str_synth: Strictosid 92.2 0.69 1.5E-05 24.9 4.8 45 19-64 2-66 (89)
10 TIGR02276 beta_rpt_yvtn 40-res 91.5 0.66 1.4E-05 20.5 5.8 39 24-62 3-41 (42)
11 PF08450 SGL: SMP-30/Gluconola 90.5 2.4 5.3E-05 26.0 6.7 31 13-43 132-164 (246)
12 TIGR03032 conserved hypothetic 89.8 1.6 3.5E-05 29.0 5.6 43 7-50 196-238 (335)
13 PLN02919 haloacid dehalogenase 89.0 3 6.5E-05 31.6 7.1 30 14-43 623-654 (1057)
14 PF01731 Arylesterase: Arylest 88.9 2.3 5E-05 22.7 5.0 40 2-42 42-83 (86)
15 KOG4499|consensus 86.5 5.1 0.00011 26.0 6.1 50 4-53 195-251 (310)
16 PF08450 SGL: SMP-30/Gluconola 86.4 5.6 0.00012 24.3 6.6 45 17-63 2-48 (246)
17 PLN02919 haloacid dehalogenase 81.1 10 0.00023 28.8 6.8 37 11-48 564-602 (1057)
18 PF12942 Archaeal_AmoA: Archae 73.8 2.1 4.6E-05 25.8 1.3 12 23-34 12-23 (183)
19 PF08309 LVIVD: LVIVD repeat; 68.3 11 0.00023 17.4 5.6 33 17-50 4-36 (42)
20 TIGR02604 Piru_Ver_Nterm putat 68.1 32 0.00069 22.7 6.3 45 17-62 126-191 (367)
21 COG3386 Gluconolactonase [Carb 67.5 13 0.00028 24.3 4.0 33 10-42 158-192 (307)
22 TIGR03606 non_repeat_PQQ dehyd 64.0 47 0.001 23.2 6.7 38 8-45 23-61 (454)
23 COG3386 Gluconolactonase [Carb 63.2 32 0.0007 22.5 5.2 25 25-49 37-61 (307)
24 PF05096 Glu_cyclase_2: Glutam 62.8 39 0.00085 21.9 6.4 28 17-44 92-119 (264)
25 COG4257 Vgb Streptogramin lyas 60.0 26 0.00056 23.3 4.2 48 15-62 62-111 (353)
26 PF08887 GAD-like: GAD-like do 54.3 24 0.00052 19.6 3.1 26 13-38 78-103 (109)
27 TIGR02604 Piru_Ver_Nterm putat 47.5 81 0.0017 20.8 6.5 37 7-45 64-100 (367)
28 KOG1520|consensus 46.7 22 0.00048 24.2 2.5 11 24-34 171-181 (376)
29 TIGR03080 CH4_NH3mon_ox_A meth 46.3 4 8.7E-05 25.9 -1.0 22 17-38 38-59 (243)
30 cd05468 pVHL von Hippel-Landau 43.4 46 0.001 19.2 3.2 21 27-47 23-43 (141)
31 PF14759 Reductase_C: Reductas 41.4 53 0.0012 17.0 4.7 25 28-52 2-26 (85)
32 KOG4659|consensus 41.1 87 0.0019 25.5 4.9 45 2-46 392-440 (1899)
33 COG5276 Uncharacterized conser 40.2 79 0.0017 21.3 4.2 28 19-47 91-118 (370)
34 PF05694 SBP56: 56kDa selenium 39.1 73 0.0016 22.4 4.0 35 18-52 317-351 (461)
35 PRK04043 tolB translocation pr 38.0 1.3E+02 0.0028 20.5 5.3 47 1-48 176-226 (419)
36 PF13964 Kelch_6: Kelch motif 36.7 46 0.001 15.0 2.2 16 16-31 3-18 (50)
37 PF02239 Cytochrom_D1: Cytochr 32.4 1.1E+02 0.0024 20.4 4.1 38 23-61 326-364 (369)
38 PF13360 PQQ_2: PQQ-like domai 32.1 1.1E+02 0.0024 18.0 4.1 32 14-46 201-233 (238)
39 COG1736 DPH2 Diphthamide synth 30.3 1.1E+02 0.0023 20.8 3.6 38 5-42 180-218 (347)
40 PF01344 Kelch_1: Kelch motif; 30.2 59 0.0013 14.2 2.3 13 18-30 5-17 (47)
41 PF09354 HNF_C: HNF3 C-termina 29.4 17 0.00036 18.5 -0.1 7 15-21 1-7 (65)
42 PF13570 PQQ_3: PQQ-like domai 29.3 60 0.0013 14.0 3.6 23 18-41 15-37 (40)
43 PHA02275 hypothetical protein 28.5 81 0.0018 17.6 2.5 19 25-43 104-123 (125)
44 cd08687 C2_PKN-like C2 domain 26.1 35 0.00077 18.8 0.8 20 16-35 37-61 (98)
45 TIGR03866 PQQ_ABC_repeats PQQ- 24.5 1.7E+02 0.0037 17.6 6.8 46 17-62 251-298 (300)
46 PF15257 DUF4590: Domain of un 24.5 1.5E+02 0.0032 16.9 3.1 16 13-28 46-61 (116)
47 TIGR03118 PEPCTERM_chp_1 conse 22.4 2.6E+02 0.0056 18.9 6.4 53 2-54 230-290 (336)
48 PF07995 GSDH: Glucose / Sorbo 21.3 2.5E+02 0.0054 18.4 4.8 32 14-47 1-33 (331)
49 PF12814 Mcp5_PH: Meiotic cell 21.2 85 0.0018 17.5 1.8 17 18-34 35-51 (123)
50 PF14269 Arylsulfotran_2: Aryl 20.7 2.3E+02 0.0049 18.5 3.8 34 13-46 142-176 (299)
No 1
>KOG1214|consensus
Probab=99.22 E-value=1.2e-11 Score=87.00 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC--CcceEEEEec
Q psy14260 2 AQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS--RPFAIHIYHR 65 (73)
Q Consensus 2 dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~--~~~~i~v~h~ 65 (73)
||+.||+|.++ +++||+|+-+++.+|||||+..+|.+++++.++.....+..- ..+||+++-+
T Consensus 1186 ~g~gRR~i~~~-LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~ 1250 (1289)
T KOG1214|consen 1186 DGTGRRVIQNN-LQYPFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYP 1250 (1289)
T ss_pred CCCcchhhhhc-ccCceeeeeccccceeeccccCceEEeeccccccccccccccccceEEEEeccc
Confidence 79999998775 899999999999999999999999999999988777766443 8899987653
No 2
>KOG1215|consensus
Probab=99.12 E-value=4.3e-10 Score=79.81 Aligned_cols=72 Identities=24% Similarity=0.478 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeE-EEecCC-CcceEEEE-ecCCCCCCCC
Q psy14260 1 MAQMKNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYE-TIANFS-RPFAIHIY-HRQKQPDDIK 73 (73)
Q Consensus 1 ~dG~~r~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~-~~~~~~-~~~~i~v~-h~~~qp~~~~ 73 (73)
|||.+|+++....+.|||++++|++++||+||...++.+..+..|.+ + .+.... .+..+.++ |...||.+.|
T Consensus 597 ~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n 671 (877)
T KOG1215|consen 597 MDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSD-SRTSRSNLAQPLDIILVHHSSSRPTGVN 671 (877)
T ss_pred cCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCc-ceeeecccCcccceEEEeccccCCCCCC
Confidence 68999994445589999999999999999999999999999888877 3 222333 77776666 7777776644
No 3
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.11 E-value=5.5e-10 Score=52.63 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=33.1
Q ss_pred CEEEEEeCCCC-eEEEEeCcCCCCeEEEecC-C-CcceEEEEe
Q psy14260 25 NNLFVTSWRNQ-SIIRVNKYNSDDYETIANF-S-RPFAIHIYH 64 (73)
Q Consensus 25 ~~lywtDw~~~-~i~~~~k~~g~~~~~~~~~-~-~~~~i~v~h 64 (73)
++|||+||... .|.+++ ++|++++++... . .|.+|.|++
T Consensus 1 ~~iYWtD~~~~~~I~~a~-~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERAN-LDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEE-TTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEE-CCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 999888 788888877755 4 999999863
No 4
>KOG1214|consensus
Probab=98.86 E-value=5.9e-09 Score=73.89 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcCCCCCceEEE--EECCEEEEEeCCCC--eEEEEeCcCCCCeEEEecCC--CcceEEEEecCC
Q psy14260 1 MAQMKNKVLVKPVVQNLYDIT--VFENNLFVTSWRNQ--SIIRVNKYNSDDYETIANFS--RPFAIHIYHRQK 67 (73)
Q Consensus 1 ~dG~~r~~v~~~~~~~p~~l~--vfe~~lywtDw~~~--~i~~~~k~~g~~~~~~~~~~--~~~~i~v~h~~~ 67 (73)
|||+.|++++...+-.|-+|. .+...||||||... .|.+++ +.|+|++++++.. .|+|+++.--.+
T Consensus 1097 LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~-mDG~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1097 LDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSS-MDGENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred cCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeec-cCCccceEEeecccCCCCCceeCcccc
Confidence 799999999988888998776 68999999999865 588888 7899999888764 899988754443
No 5
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.75 E-value=6.4e-08 Score=44.70 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred EEcCCCCCc--eEEEEECCEEEEEeCCCCeEEEEeCcCCCC
Q psy14260 9 LVKPVVQNL--YDITVFENNLFVTSWRNQSIIRVNKYNSDD 47 (73)
Q Consensus 9 v~~~~~~~p--~~l~vfe~~lywtDw~~~~i~~~~k~~g~~ 47 (73)
++...+.+| ++++..++.|||+|+....|.+++ ++|.+
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~-~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEe-CCCCC
Confidence 444567888 556689999999999999999988 55543
No 6
>KOG1215|consensus
Probab=98.45 E-value=3.1e-07 Score=65.52 Aligned_cols=51 Identities=33% Similarity=0.509 Sum_probs=46.6
Q ss_pred EEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEEEecCCCCCCC
Q psy14260 19 DITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHIYHRQKQPDDI 72 (73)
Q Consensus 19 ~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h~~~qp~~~ 72 (73)
+|++|++.+||+| ++|.+.+|.+|++...+.... .|+.++++|+.+||...
T Consensus 73 ~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (877)
T KOG1215|consen 73 ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAP 124 (877)
T ss_pred eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCC
Confidence 9999999999999 789999999999999888776 78999999999999764
No 7
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.38 E-value=6.8e-07 Score=41.94 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=21.7
Q ss_pred CCCCCeEEEEcCCCCCceEEEEE
Q psy14260 1 MAQMKNKVLVKPVVQNLYDITVF 23 (73)
Q Consensus 1 ~dG~~r~~v~~~~~~~p~~l~vf 23 (73)
|||++|++|+...+.+|.||||+
T Consensus 19 ~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 19 LDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TTSTSEEEEEESSTSSEEEEEEE
T ss_pred CCCCCeEEEEECCCCCcCEEEEC
Confidence 79999999999999999999986
No 8
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=94.84 E-value=0.12 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.0
Q ss_pred CCceEEEE-ECCEEEEEeCCCCeEEE
Q psy14260 15 QNLYDITV-FENNLFVTSWRNQSIIR 39 (73)
Q Consensus 15 ~~p~~l~v-fe~~lywtDw~~~~i~~ 39 (73)
..|.+|++ -++.||-+|...+.|+.
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 57999998 57899999999888764
No 9
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.24 E-value=0.69 Score=24.94 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=26.4
Q ss_pred EEEEEC--CEEEEEeCC-----------------CCeEEEEeCcCCCCeEEEecCC-CcceEEEEe
Q psy14260 19 DITVFE--NNLFVTSWR-----------------NQSIIRVNKYNSDDYETIANFS-RPFAIHIYH 64 (73)
Q Consensus 19 ~l~vfe--~~lywtDw~-----------------~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v~h 64 (73)
+++|-. +.||+||.. ++.+++.|.. .+..+++..+. .|+||.+-.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~-t~~~~vl~~~L~fpNGVals~ 66 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPS-TKETTVLLDGLYFPNGVALSP 66 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETT-TTEEEEEEEEESSEEEEEE-T
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECC-CCeEEEehhCCCccCeEEEcC
Confidence 456655 499999975 2456666643 33455666666 899998754
No 10
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.54 E-value=0.66 Score=20.50 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcceEEE
Q psy14260 24 ENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHI 62 (73)
Q Consensus 24 e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v 62 (73)
+++||-+++..++|..++.-++.....+.....|.+|.+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 578999999999998888655544444444336777653
No 11
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.52 E-value=2.4 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.080 Sum_probs=26.4
Q ss_pred CCCCceEEEEE--CCEEEEEeCCCCeEEEEeCc
Q psy14260 13 VVQNLYDITVF--ENNLFVTSWRNQSIIRVNKY 43 (73)
Q Consensus 13 ~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~ 43 (73)
.+..|.+|++- ++.||++|...+.|++.+..
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEecc
Confidence 47889999976 56899999999999999854
No 12
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.84 E-value=1.6 Score=28.97 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=34.1
Q ss_pred EEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEE
Q psy14260 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYET 50 (73)
Q Consensus 7 ~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~ 50 (73)
++|++ .+..|.+.-.+++.||.+|+.++.+.+++.-+|+...+
T Consensus 196 evl~~-GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V 238 (335)
T TIGR03032 196 EVVAS-GLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV 238 (335)
T ss_pred CEEEc-CccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence 34445 47789999999999999999999999999666654443
No 13
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.97 E-value=3 Score=31.56 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCCceEEEEE--CCEEEEEeCCCCeEEEEeCc
Q psy14260 14 VQNLYDITVF--ENNLFVTSWRNQSIIRVNKY 43 (73)
Q Consensus 14 ~~~p~~l~vf--e~~lywtDw~~~~i~~~~k~ 43 (73)
+..|.+|++- ++.||++|..++.|.+++..
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence 4579999986 46899999999999988843
No 14
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=88.92 E-value=2.3 Score=22.72 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCCCCceEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy14260 2 AQMKNKVLVKPVVQNLYDITVF--ENNLFVTSWRNQSIIRVNK 42 (73)
Q Consensus 2 dG~~r~~v~~~~~~~p~~l~vf--e~~lywtDw~~~~i~~~~k 42 (73)
||+..+++.. .+..|.||++- +++||-++-..++|....+
T Consensus 42 d~~~~~~va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 42 DGKEVKVVAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eCCEeEEeec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 6777776655 47899999974 6899999988888876543
No 15
>KOG4499|consensus
Probab=86.48 E-value=5.1 Score=25.96 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=37.8
Q ss_pred CCeEEEEcC------CCCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCCeEEEec
Q psy14260 4 MKNKVLVKP------VVQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDDYETIAN 53 (73)
Q Consensus 4 ~~r~~v~~~------~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~~~~~~~ 53 (73)
+||++|..- ...-|=|+++- |..||-+-|....+++++-.+|+-..++.-
T Consensus 195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence 688888752 22334567753 789999999999999999999987766553
No 16
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.35 E-value=5.6 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=28.8
Q ss_pred ceEEEEE--CCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcceEEEE
Q psy14260 17 LYDITVF--ENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIY 63 (73)
Q Consensus 17 p~~l~vf--e~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v~ 63 (73)
|-+++.. ++.|||+|-..+.|++++..++ ....+... .|.++.+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~-~~~~~~~~-~~~G~~~~ 48 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTG-EVEVIDLP-GPNGMAFD 48 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEESS-SEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCC-eEEEEecC-CCceEEEE
Confidence 3456666 5999999999999999986544 33332222 25555544
No 17
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=81.15 E-value=10 Score=28.82 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=28.7
Q ss_pred cCCCCCceEEEE--ECCEEEEEeCCCCeEEEEeCcCCCCe
Q psy14260 11 KPVVQNLYDITV--FENNLFVTSWRNQSIIRVNKYNSDDY 48 (73)
Q Consensus 11 ~~~~~~p~~l~v--fe~~lywtDw~~~~i~~~~k~~g~~~ 48 (73)
.+++..|-++++ .++.||.+|...+.|.+++ .+|...
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d-~~G~~i 602 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTD-LDGNFI 602 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEe-CCCCEE
Confidence 345778888887 4789999999999999988 455443
No 18
>PF12942 Archaeal_AmoA: Archaeal ammonia monooxygenase subunit A (AmoA); InterPro: IPR024656 This entry represents a group of archaeal proteins that contains ammonia monooxygenase subunit A. Ammonia monooxygenase is an enzyme that oxidises ammonia to nitrite and nitrate, thus playing a significant role in the nitrogen cycle. Ammonia-oxidising archaea (AOA) are widespread in marine environments [].
Probab=73.84 E-value=2.1 Score=25.80 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.1
Q ss_pred ECCEEEEEeCCC
Q psy14260 23 FENNLFVTSWRN 34 (73)
Q Consensus 23 fe~~lywtDw~~ 34 (73)
-+||||+|||.=
T Consensus 12 agdyifytdwaw 23 (183)
T PF12942_consen 12 AGDYIFYTDWAW 23 (183)
T ss_pred cCceeEEeccCC
Confidence 489999999864
No 19
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=68.27 E-value=11 Score=17.36 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=23.4
Q ss_pred ceEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEE
Q psy14260 17 LYDITVFENNLFVTSWRNQSIIRVNKYNSDDYET 50 (73)
Q Consensus 17 p~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~ 50 (73)
..++++-++|+|-.++.. .+.-+|-.+-.+...
T Consensus 4 a~~v~v~g~yaYva~~~~-Gl~IvDISnPs~P~~ 36 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNN-GLVIVDISNPSNPVL 36 (42)
T ss_pred EEEEEEECCEEEEEeCCC-CEEEEECCCCCCCEE
Confidence 567899999999998876 455566554444443
No 20
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=68.12 E-value=32 Score=22.71 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=30.1
Q ss_pred ceEEEEE-CCEEEEEeCCC-------------------CeEEEEeCcCCCCeEEEecCC-CcceEEE
Q psy14260 17 LYDITVF-ENNLFVTSWRN-------------------QSIIRVNKYNSDDYETIANFS-RPFAIHI 62 (73)
Q Consensus 17 p~~l~vf-e~~lywtDw~~-------------------~~i~~~~k~~g~~~~~~~~~~-~~~~i~v 62 (73)
+.++++- ++.||+++... ..|+|++ -.|+..+.+.... .|.++..
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~-pdg~~~e~~a~G~rnp~Gl~~ 191 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN-PDGGKLRVVAHGFQNPYGHSV 191 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe-cCCCeEEEEecCcCCCccceE
Confidence 5677763 45999988731 4588887 4455666666665 6777754
No 21
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=67.47 E-value=13 Score=24.34 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=25.9
Q ss_pred EcCCCCCceEEEE--ECCEEEEEeCCCCeEEEEeC
Q psy14260 10 VKPVVQNLYDITV--FENNLFVTSWRNQSIIRVNK 42 (73)
Q Consensus 10 ~~~~~~~p~~l~v--fe~~lywtDw~~~~i~~~~k 42 (73)
+...+..|.||+. -|..+|++|.....|++++-
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 3334778888884 46689999999999999864
No 22
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.96 E-value=47 Score=23.16 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.9
Q ss_pred EEEcCCCCCceEEEEEC-CEEEEEeCCCCeEEEEeCcCC
Q psy14260 8 VLVKPVVQNLYDITVFE-NNLFVTSWRNQSIIRVNKYNS 45 (73)
Q Consensus 8 ~v~~~~~~~p~~l~vfe-~~lywtDw~~~~i~~~~k~~g 45 (73)
.++.+.+.+|.+|+... +.||-++-..+.|.+++.-++
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34455699999999765 488888876788988874433
No 23
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=63.16 E-value=32 Score=22.52 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCeEEEEeCcCCCCeE
Q psy14260 25 NNLFVTSWRNQSIIRVNKYNSDDYE 49 (73)
Q Consensus 25 ~~lywtDw~~~~i~~~~k~~g~~~~ 49 (73)
+.|||+|...+.|++.+-.+|....
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~ 61 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRV 61 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEE
Confidence 5689999999999999865564433
No 24
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=62.84 E-value=39 Score=21.88 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=23.8
Q ss_pred ceEEEEECCEEEEEeCCCCeEEEEeCcC
Q psy14260 17 LYDITVFENNLFVTSWRNQSIIRVNKYN 44 (73)
Q Consensus 17 p~~l~vfe~~lywtDw~~~~i~~~~k~~ 44 (73)
--||++.+|.||-..|+.+..+..|+.+
T Consensus 92 gEGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 92 GEGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred ceeEEEECCEEEEEEecCCeEEEEcccc
Confidence 3579999999999999999888777653
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=59.98 E-value=26 Score=23.34 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCceEEEEECC-EEEEEeCCCCeEEEEeCcCCCCeEEEecCC-CcceEEE
Q psy14260 15 QNLYDITVFEN-NLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHI 62 (73)
Q Consensus 15 ~~p~~l~vfe~-~lywtDw~~~~i~~~~k~~g~~~~~~~~~~-~~~~i~v 62 (73)
..||.++.-.| .+++++-.++.|-+.|-.+|+-...-+... .|++|.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~ 111 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVV 111 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEE
Confidence 56788886655 499999889999999988876555444444 8888765
No 26
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=54.32 E-value=24 Score=19.65 Aligned_cols=26 Identities=15% Similarity=-0.087 Sum_probs=20.3
Q ss_pred CCCCceEEEEECCEEEEEeCCCCeEE
Q psy14260 13 VVQNLYDITVFENNLFVTSWRNQSII 38 (73)
Q Consensus 13 ~~~~p~~l~vfe~~lywtDw~~~~i~ 38 (73)
...||++.+-|+|-++|..-....+.
T Consensus 78 ~~~~~ia~tAFGdl~~w~e~~g~~~~ 103 (109)
T PF08887_consen 78 DNYIPIARTAFGDLYVWGENTGISLI 103 (109)
T ss_pred ceEEEEEEcccccEEEEEcCCceEEE
Confidence 34689999999999999976655443
No 27
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=47.52 E-value=81 Score=20.83 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=25.3
Q ss_pred EEEEcCCCCCceEEEEECCEEEEEeCCCCeEEEEeCcCC
Q psy14260 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNS 45 (73)
Q Consensus 7 ~~v~~~~~~~p~~l~vfe~~lywtDw~~~~i~~~~k~~g 45 (73)
..++...+..|.+|++..+-||-++. ..|+++....|
T Consensus 64 ~~vfa~~l~~p~Gi~~~~~GlyV~~~--~~i~~~~d~~g 100 (367)
T TIGR02604 64 SNVFAEELSMVTGLAVAVGGVYVATP--PDILFLRDKDG 100 (367)
T ss_pred eEEeecCCCCccceeEecCCEEEeCC--CeEEEEeCCCC
Confidence 34455557889999988777999864 45777743433
No 28
>KOG1520|consensus
Probab=46.67 E-value=22 Score=24.20 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=9.5
Q ss_pred CCEEEEEeCCC
Q psy14260 24 ENNLFVTSWRN 34 (73)
Q Consensus 24 e~~lywtDw~~ 34 (73)
|+-+||||..+
T Consensus 171 ~g~vyFTDSSs 181 (376)
T KOG1520|consen 171 EGVVYFTDSSS 181 (376)
T ss_pred CCeEEEecccc
Confidence 79999999765
No 29
>TIGR03080 CH4_NH3mon_ox_A methane monooxygenase/ammonia monooxygenase, subunit A. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit A of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=46.26 E-value=4 Score=25.93 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=16.6
Q ss_pred ceEEEEECCEEEEEeCCCCeEE
Q psy14260 17 LYDITVFENNLFVTSWRNQSII 38 (73)
Q Consensus 17 p~~l~vfe~~lywtDw~~~~i~ 38 (73)
...+..-+|.=||+||++...+
T Consensus 38 ~h~~l~~gDWdFW~DWKDRr~W 59 (243)
T TIGR03080 38 MHFMLLAGDWDFWVDWKDRQFW 59 (243)
T ss_pred HHHHhhccCchhhcCCccceee
Confidence 3333445899999999998876
No 30
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=43.37 E-value=46 Score=19.24 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=13.5
Q ss_pred EEEEeCCCCeEEEEeCcCCCC
Q psy14260 27 LFVTSWRNQSIIRVNKYNSDD 47 (73)
Q Consensus 27 lywtDw~~~~i~~~~k~~g~~ 47 (73)
+||.|+..+.+.-...-.|..
T Consensus 23 ~~Wid~~G~~~~Y~~l~pg~~ 43 (141)
T cd05468 23 LYWIDYDGKPVSYGTLQPGET 43 (141)
T ss_pred EEEECCCCCEEEeeeeCCCCE
Confidence 689998877666544444443
No 31
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=41.38 E-value=53 Score=17.01 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=16.9
Q ss_pred EEEeCCCCeEEEEeCcCCCCeEEEe
Q psy14260 28 FVTSWRNQSIIRVNKYNSDDYETIA 52 (73)
Q Consensus 28 ywtDw~~~~i~~~~k~~g~~~~~~~ 52 (73)
||||-....|+.+-.-.+.+..++.
T Consensus 2 FWSdQ~~~~iq~~G~~~~~~~~v~r 26 (85)
T PF14759_consen 2 FWSDQYGVRIQIAGLPGGADEVVVR 26 (85)
T ss_dssp EEEEETTEEEEEEE-STTSSEEEEE
T ss_pred eecccCCCeEEEEECCCCCCEEEEE
Confidence 8999999899888754444444443
No 32
>KOG4659|consensus
Probab=41.05 E-value=87 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCCeEEEEcC--CCCCceEEE--EECCEEEEEeCCCCeEEEEeCcCCC
Q psy14260 2 AQMKNKVLVKP--VVQNLYDIT--VFENNLFVTSWRNQSIIRVNKYNSD 46 (73)
Q Consensus 2 dG~~r~~v~~~--~~~~p~~l~--vfe~~lywtDw~~~~i~~~~k~~g~ 46 (73)
||+-+.++--+ ...|-|=|| ..++.||-+|...+.|+|+....++
T Consensus 392 dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~ 440 (1899)
T KOG4659|consen 392 DGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ 440 (1899)
T ss_pred CCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcc
Confidence 34444443322 556776666 5799999999999999999776554
No 33
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=79 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEECCEEEEEeCCCCeEEEEeCcCCCC
Q psy14260 19 DITVFENNLFVTSWRNQSIIRVNKYNSDD 47 (73)
Q Consensus 19 ~l~vfe~~lywtDw~~~~i~~~~k~~g~~ 47 (73)
.+.+-|+|+|.+||..+ +.-+|--+..+
T Consensus 91 Dv~vse~yvyvad~ssG-L~IvDIS~P~s 118 (370)
T COG5276 91 DVRVSEEYVYVADWSSG-LRIVDISTPDS 118 (370)
T ss_pred eeEecccEEEEEcCCCc-eEEEeccCCCC
Confidence 45577999999999874 55555444333
No 34
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=39.15 E-value=73 Score=22.41 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=24.2
Q ss_pred eEEEEECCEEEEEeCCCCeEEEEeCcCCCCeEEEe
Q psy14260 18 YDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA 52 (73)
Q Consensus 18 ~~l~vfe~~lywtDw~~~~i~~~~k~~g~~~~~~~ 52 (73)
..|++-+.+||.+.|..+.|...|-....+.+.+.
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 45667889999999999999988866555555443
No 35
>PRK04043 tolB translocation protein TolB; Provisional
Probab=38.00 E-value=1.3e+02 Score=20.48 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=26.1
Q ss_pred CCCCCeEEEEcCCCCCce-EEEEECCE-EEEEeCC--CCeEEEEeCcCCCCe
Q psy14260 1 MAQMKNKVLVKPVVQNLY-DITVFENN-LFVTSWR--NQSIIRVNKYNSDDY 48 (73)
Q Consensus 1 ~dG~~r~~v~~~~~~~p~-~l~vfe~~-lywtDw~--~~~i~~~~k~~g~~~ 48 (73)
.||.|.+++..+. .... ..+--++. +|++... ...|+..+..+|+..
T Consensus 176 ~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~ 226 (419)
T PRK04043 176 YTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE 226 (419)
T ss_pred CCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE
Confidence 3889888776653 1111 11223454 7766655 346888886555433
No 36
>PF13964 Kelch_6: Kelch motif
Probab=36.68 E-value=46 Score=15.02 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=11.8
Q ss_pred CceEEEEECCEEEEEe
Q psy14260 16 NLYDITVFENNLFVTS 31 (73)
Q Consensus 16 ~p~~l~vfe~~lywtD 31 (73)
+-+++++++++||-.=
T Consensus 3 ~~~s~v~~~~~iyv~G 18 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFG 18 (50)
T ss_pred ccCEEEEECCEEEEEC
Confidence 3467788999999653
No 37
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=32.40 E-value=1.1e+02 Score=20.41 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=24.6
Q ss_pred ECCEEEEEeCCCC-eEEEEeCcCCCCeEEEecCCCcceEE
Q psy14260 23 FENNLFVTSWRNQ-SIIRVNKYNSDDYETIANFSRPFAIH 61 (73)
Q Consensus 23 fe~~lywtDw~~~-~i~~~~k~~g~~~~~~~~~~~~~~i~ 61 (73)
-++++|-|.|..+ .|.-.|-.+.+....+. ...|.|+-
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~-~~tP~G~f 364 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP-VPTPTGKF 364 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEEE---SEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEEE-eeCCCeEe
Confidence 3689999999998 88888866655555555 12677754
No 38
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.11 E-value=1.1e+02 Score=18.05 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCceE-EEEECCEEEEEeCCCCeEEEEeCcCCC
Q psy14260 14 VQNLYD-ITVFENNLFVTSWRNQSIIRVNKYNSD 46 (73)
Q Consensus 14 ~~~p~~-l~vfe~~lywtDw~~~~i~~~~k~~g~ 46 (73)
...+.+ ...-++.||..+ ....+..+|..+|+
T Consensus 201 ~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 201 ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCC
Confidence 344455 556777777777 66777777766664
No 39
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=1.1e+02 Score=20.79 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCCceEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy14260 5 KNKVLVKPVVQNLYDITVF-ENNLFVTSWRNQSIIRVNK 42 (73)
Q Consensus 5 ~r~~v~~~~~~~p~~l~vf-e~~lywtDw~~~~i~~~~k 42 (73)
+.-+.+.+..-||.+++++ +.-+|-.|...+.+...+.
T Consensus 180 d~~l~vg~G~FH~lg~~i~~~~~v~~~dP~s~~~~~~~~ 218 (347)
T COG1736 180 DAVLYVGSGRFHPLGLAIRTEKPVFAIDPYSGKVREEDP 218 (347)
T ss_pred ceEEEEcCCccChhhcccccCCcEEEEcCCCCceeecch
Confidence 4444455567899999988 8889999998888877665
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=30.24 E-value=59 Score=14.22 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.6
Q ss_pred eEEEEECCEEEEE
Q psy14260 18 YDITVFENNLFVT 30 (73)
Q Consensus 18 ~~l~vfe~~lywt 30 (73)
++++++++.||-.
T Consensus 5 ~~~~~~~~~iyv~ 17 (47)
T PF01344_consen 5 HAAVVVGNKIYVI 17 (47)
T ss_dssp EEEEEETTEEEEE
T ss_pred CEEEEECCEEEEE
Confidence 6788899999955
No 41
>PF09354 HNF_C: HNF3 C-terminal domain; InterPro: IPR018533 This presumed domain is found in the C-terminal region of Hepatocyte Nuclear Factor 3 alpha and beta chains. Its specific function is uncertain. The N-terminal region of this presumed domain contains an EH1 (engrailed homology 1) motif, that is characterised by the FxIxxIL sequence [].
Probab=29.37 E-value=17 Score=18.54 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=4.9
Q ss_pred CCceEEE
Q psy14260 15 QNLYDIT 21 (73)
Q Consensus 15 ~~p~~l~ 21 (73)
.|||+|+
T Consensus 1 nHPFSI~ 7 (65)
T PF09354_consen 1 NHPFSIN 7 (65)
T ss_pred CCCcchh
Confidence 3777776
No 42
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=29.33 E-value=60 Score=13.99 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=15.4
Q ss_pred eEEEEECCEEEEEeCCCCeEEEEe
Q psy14260 18 YDITVFENNLFVTSWRNQSIIRVN 41 (73)
Q Consensus 18 ~~l~vfe~~lywtDw~~~~i~~~~ 41 (73)
-++++-++.+|-.+. .+.++.++
T Consensus 15 ~~~~v~~g~vyv~~~-dg~l~ald 37 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG-DGNLYALD 37 (40)
T ss_dssp S--EECTSEEEEE-T-TSEEEEEE
T ss_pred cCCEEECCEEEEEcC-CCEEEEEe
Confidence 356889999999988 44676665
No 43
>PHA02275 hypothetical protein
Probab=28.46 E-value=81 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=13.7
Q ss_pred CEEEEEeCCCC-eEEEEeCc
Q psy14260 25 NNLFVTSWRNQ-SIIRVNKY 43 (73)
Q Consensus 25 ~~lywtDw~~~-~i~~~~k~ 43 (73)
+--||.|+.++ ..+|+.|.
T Consensus 104 ~~yywidygshh~ffrvtk~ 123 (125)
T PHA02275 104 DEYYWIDYGSHHCFFRVTKG 123 (125)
T ss_pred cceEEEecCCceEEEEeecC
Confidence 45699999876 56777653
No 44
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=26.05 E-value=35 Score=18.79 Aligned_cols=20 Identities=15% Similarity=0.559 Sum_probs=13.5
Q ss_pred CceEEEE-----ECCEEEEEeCCCC
Q psy14260 16 NLYDITV-----FENNLFVTSWRNQ 35 (73)
Q Consensus 16 ~p~~l~v-----fe~~lywtDw~~~ 35 (73)
+-|.+.+ .|=.+||-||+.-
T Consensus 37 Q~Fti~LdRsRELEI~VywrD~Rsl 61 (98)
T cd08687 37 QSFTLELERSRELEIAVYWRDWRSL 61 (98)
T ss_pred ceeEEEeecccEEEEEEEEecchhh
Confidence 3466664 4557999999763
No 45
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=24.47 E-value=1.7e+02 Score=17.59 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=28.5
Q ss_pred ceEEEE--ECCEEEEEeCCCCeEEEEeCcCCCCeEEEecCCCcceEEE
Q psy14260 17 LYDITV--FENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHI 62 (73)
Q Consensus 17 p~~l~v--fe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~~~~~~i~v 62 (73)
|+++++ -+++||-+.-....|...+..+++-...+.....|++|.+
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVV 298 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEe
Confidence 555654 4567776666566787777666555555543337888764
No 46
>PF15257 DUF4590: Domain of unknown function (DUF4590)
Probab=24.46 E-value=1.5e+02 Score=16.87 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=11.8
Q ss_pred CCCCceEEEEECCEEE
Q psy14260 13 VVQNLYDITVFENNLF 28 (73)
Q Consensus 13 ~~~~p~~l~vfe~~ly 28 (73)
-...||+|++|-|-|=
T Consensus 46 h~gfPFsltf~~nG~q 61 (116)
T PF15257_consen 46 HRGFPFSLTFFLNGMQ 61 (116)
T ss_pred ccCCCeEEEEEEccEE
Confidence 4467999998877654
No 47
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=22.36 E-value=2.6e+02 Score=18.95 Aligned_cols=53 Identities=6% Similarity=0.138 Sum_probs=37.8
Q ss_pred CCCCeEEEEcC-CCCCceEEEE-------ECCEEEEEeCCCCeEEEEeCcCCCCeEEEecC
Q psy14260 2 AQMKNKVLVKP-VVQNLYDITV-------FENNLFVTSWRNQSIIRVNKYNSDDYETIANF 54 (73)
Q Consensus 2 dG~~r~~v~~~-~~~~p~~l~v-------fe~~lywtDw~~~~i~~~~k~~g~~~~~~~~~ 54 (73)
||.-.+.+.++ .+..|++|++ |.+.|.--.-.+..|-.-|-.+|...-.+...
T Consensus 230 ~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 230 NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 56555555554 8899999997 56788888888888887776667666555544
No 48
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=21.28 E-value=2.5e+02 Score=18.35 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCceEEEEE-CCEEEEEeCCCCeEEEEeCcCCCC
Q psy14260 14 VQNLYDITVF-ENNLFVTSWRNQSIIRVNKYNSDD 47 (73)
Q Consensus 14 ~~~p~~l~vf-e~~lywtDw~~~~i~~~~k~~g~~ 47 (73)
+.+|.+|++- ++.||.++- .+.|+.++ ..|..
T Consensus 1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAER-SGRIWVVD-KDGSL 33 (331)
T ss_dssp ESSEEEEEEETTSCEEEEET-TTEEEEEE-TTTEE
T ss_pred CCCceEEEEeCCCcEEEEeC-CceEEEEe-CCCcC
Confidence 3579999977 458999988 78899888 44443
No 49
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=21.17 E-value=85 Score=17.53 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=14.3
Q ss_pred eEEEEECCEEEEEeCCC
Q psy14260 18 YDITVFENNLFVTSWRN 34 (73)
Q Consensus 18 ~~l~vfe~~lywtDw~~ 34 (73)
|=|......|||+++..
T Consensus 35 fwv~~~~~~L~Ws~~~p 51 (123)
T PF12814_consen 35 FWVDPYTRTLYWSSSNP 51 (123)
T ss_pred EEEeCCCCEEEecCCCC
Confidence 66888999999999763
No 50
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=20.67 E-value=2.3e+02 Score=18.48 Aligned_cols=34 Identities=6% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCCceEEEEECC-EEEEEeCCCCeEEEEeCcCCC
Q psy14260 13 VVQNLYDITVFEN-NLFVTSWRNQSIIRVNKYNSD 46 (73)
Q Consensus 13 ~~~~p~~l~vfe~-~lywtDw~~~~i~~~~k~~g~ 46 (73)
...|..++..+++ .+..|-....+|+.++.-+|+
T Consensus 142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~ 176 (299)
T PF14269_consen 142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGK 176 (299)
T ss_pred CccEeeeeeecCCccEEEEecccCEEEEEECCCCc
Confidence 4457788888875 555676777778877755553
Done!