RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14260
(73 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 64.9 bits (157), Expect = 2e-14
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 14 VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPD 70
+ + + + VFE+ +F T N++I N+ D +A N P + ++H QP
Sbjct: 602 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 659
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 64.4 bits (156), Expect = 3e-14
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 14 VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPD 70
+ + + + VFE+ +F T N++I N+ D +A N P + ++H+ QP
Sbjct: 584 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPR 641
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 55.5 bits (133), Expect = 4e-11
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
K ++ + + + ITVFE++L+ T W +SI NK+ + E I P IH H
Sbjct: 281 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 340
Query: 66 QKQPDDIK 73
Q+QP
Sbjct: 341 QRQPAGKN 348
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 54.5 bits (131), Expect = 8e-11
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 5 KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSRPFAIHI 62
+ V +Q + +T + NL+ T W+ S+I ++ S + +T +R + I I
Sbjct: 199 PGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI 258
Query: 63 YHRQKQ 68
Q
Sbjct: 259 ALSQCP 264
Score = 24.0 bits (52), Expect = 5.7
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 1 MAQMKNKVLVKPVVQNLYDITV--FENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSR 56
M + + K + + + + + ++ T SI R + + + TI +
Sbjct: 22 MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS-LHGGEPTTIIRQDLGS 80
Query: 57 PFAI 60
P I
Sbjct: 81 PEGI 84
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 52.7 bits (126), Expect = 4e-10
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 14 VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPDDI 72
+ + + + VFE+ +F T N++I N+ D +A N P + ++H QP +
Sbjct: 208 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 51.6 bits (123), Expect = 8e-10
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
+ +VK + + + +T+FE+ L+ T W SI+ NKY + I + P IH + +
Sbjct: 201 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ 260
Query: 66 QKQP 69
Q+QP
Sbjct: 261 QRQP 264
Score = 23.9 bits (51), Expect = 6.0
Identities = 4/46 (8%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 19 DITVFENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSRPFAIHI 62
D ++ + ++I R ++ + + + P +
Sbjct: 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 49.5 bits (117), Expect = 5e-09
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 14 VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPDD 71
+ + + + VFE+ +F T N++I N+ D +A N P + ++H QP
Sbjct: 290 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG 348
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 48.3 bits (114), Expect = 1e-08
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
K ++ + + + ITVFE++L+ T W +SI NK+ + E I P IH H
Sbjct: 238 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297
Query: 66 QKQP 69
Q+QP
Sbjct: 298 QRQP 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 45.2 bits (106), Expect = 2e-07
Identities = 12/65 (18%), Positives = 31/65 (47%)
Query: 5 KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYH 64
+VLV+ + +++ T+ + ++ T W+ +SI RV+K +++ I + +
Sbjct: 512 GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 571
Query: 65 RQKQP 69
+
Sbjct: 572 VHRVI 576
Score = 43.3 bits (101), Expect = 8e-07
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 18 YDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPDDI 72
+ +T+FE+ L+ T W SI+ NKY + I + P IH + +Q+QP+
Sbjct: 217 FALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 272
Score = 24.4 bits (52), Expect = 3.8
Identities = 4/44 (9%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 19 DITVFENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSRPFAI 60
D ++ + ++I R ++ + + + P +
Sbjct: 46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 38.2 bits (88), Expect = 5e-05
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 7 KVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHR 65
VL + +TVFEN L+ + Q I +++ + + ++ IH
Sbjct: 512 IVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE 571
Query: 66 QKQPD 70
+
Sbjct: 572 LNLQE 576
Score = 36.3 bits (83), Expect = 2e-04
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 5 KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIY 63
N+ ++ + + + +T +++ ++ T W +SI R NK + + I + I ++
Sbjct: 198 LNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVF 257
Query: 64 HRQKQPD 70
H +Q
Sbjct: 258 HSSRQSG 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.16
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 10/68 (14%)
Query: 8 VLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDD--YETIANFSRPFAIHIYHR 65
+ V + + +F W + + NS + E + + R
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF---W-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 66 QKQPDDIK 73
+IK
Sbjct: 217 SDHSSNIK 224
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 26.2 bits (57), Expect = 0.84
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 15 QNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI 51
+I V ++ T + + + N D + +
Sbjct: 264 GEFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic
region; jelly roll motif, cupin superfamily, structural
genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae}
SCOP: b.82.1.16 PDB: 1xe8_A*
Length = 203
Score = 25.6 bits (55), Expect = 1.7
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 24 ENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIY 63
E F + R+ + V K + +R + IY
Sbjct: 44 EGGYFKETDRSPYTMEVEKPVNGGSGNTEMVTRNQSTLIY 83
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor,
glucose dehydrogenas structural genomics, NPPSFA; 1.90A
{Thermus thermophilus}
Length = 352
Score = 25.0 bits (55), Expect = 2.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 20 ITVFENNLFVTSWRNQSIIRV 40
+ F +L+V R Q+++R+
Sbjct: 273 LAFFRGDLYVAGLRGQALLRL 293
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 24.6 bits (54), Expect = 3.5
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 18 YDITV-FENNLFVTSWRNQSIIRVNKYNSDDYETIA---NFSRPFAIHI 62
IT+ +N L+ T +N SI R+ N+ E N + P I
Sbjct: 149 AFITLGSDNALWFTENQNNSIGRIT--NTGKLEEYPLPTNAAAPVGITS 195
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 24.4 bits (54), Expect = 3.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 11 KPVVQNLYDITV--FENNLFVTSWRNQSI 37
K +VQN + V F N +F W +I
Sbjct: 179 KEMVQN---LMVLRFANRIFGPIWNRDNI 204
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain, oxidoreductase;
2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 24.5 bits (54), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 11 KPVVQNLYDITV--FENNLFVTSWRNQSI 37
K +VQN I V F N +F W + SI
Sbjct: 237 KEMVQN---IIVTRFANRVFSALWNSNSI 262
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 24.5 bits (54), Expect = 4.1
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 18 YDITVF-ENNLFVTSWRNQSIIRVNKYNSD 46
+ V + +F++ R V +N +
Sbjct: 167 NGVVVNDKQEIFISDNRAH---CVKVFNYE 193
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 24.0 bits (53), Expect = 4.8
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 11 KPVVQNLYDITV--FENNLFVTSWRNQSI 37
K +VQN I F N +F +W I
Sbjct: 182 KEMVQN---IAALRFGNPIFDAAWNKDYI 207
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta
propeller, structural genomics, PSI-2, Pro structure
initiative; 1.90A {Bacteroides uniformis}
Length = 328
Score = 24.2 bits (52), Expect = 4.8
Identities = 7/57 (12%), Positives = 19/57 (33%)
Query: 11 KPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQK 67
+ + + + ++ + I ++ + I F+ P IH +K
Sbjct: 40 FKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEK 96
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 23.4 bits (51), Expect = 9.8
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 24 ENNLFVTSWRNQSIIRVNKYNSDDYET----IANFSRPFAIHI 62
++VT +V K + + + P A+ +
Sbjct: 202 AGTVYVTEHNTN---QVVKLLAGSTTSTVLPFTGLNTPLAVAV 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.396
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,100,774
Number of extensions: 47647
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 37
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)