RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14260
         (73 letters)



>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 266

 Score = 57.6 bits (138), Expect = 2e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 14  VQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIA-NFSRPFAIHIYHRQKQPD 70
           + + + + VFE+ +F T   N++I   N+    D   +A N   P  + ++H   QP 
Sbjct: 208 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 265


>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 263

 Score = 51.8 bits (123), Expect = 2e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 5   KNKVLVKPVVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETI--ANFSRPFAIHI 62
             +  V   +Q  + +T +  NL+ T W+  S+I ++   S + +T      +R + I I
Sbjct: 199 PGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI 258

Query: 63  YHRQ 66
              Q
Sbjct: 259 ALSQ 262


>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
           {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 450

 Score = 27.3 bits (59), Expect = 0.13
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 23  FENNLFVTSWRNQSIIRV 40
           +EN L V S +   I R+
Sbjct: 367 WENTLLVPSLKRGVIFRI 384


>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 277

 Score = 23.6 bits (51), Expect = 3.0
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 15/60 (25%)

Query: 13  VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPFAIHIYHRQKQPDDI 72
           ++   Y I  F+   FV                D ++ + + + P    +Y +       
Sbjct: 221 IMNTRYRIDTFQKTYFVI---------------DSFKQLFDATAPDFAPLYLQLADAQPW 265


>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 319

 Score = 22.7 bits (47), Expect = 6.3
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 24 ENNLFVTSWRNQSIIRVNKYNSDDYETIANFS-RPFAIHI 62
          +  LF+      +I ++N    +      +    P AI I
Sbjct: 50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI 89


>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 307

 Score = 22.4 bits (48), Expect = 6.4
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 4   MKNKVLVKP-----VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPF 58
           +  K  + P          Y +T F+   +V    N +  +V  +        A   RPF
Sbjct: 241 LSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNF-------AATIPRPF 293

Query: 59  AIH 61
           ++ 
Sbjct: 294 SVR 296


>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 336

 Score = 22.4 bits (48), Expect = 7.1
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 4   MKNKVLVKP-----VVQNLYDITVFENNLFVTSWRNQSIIRVNKYNSDDYETIANFSRPF 58
           +  +  V+           Y    ++   FV+   N +  ++  Y        +   RPF
Sbjct: 242 LSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNY-------ASRIQRPF 294

Query: 59  AIH 61
           ++ 
Sbjct: 295 SVK 297


>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 260

 Score = 22.5 bits (46), Expect = 8.1
 Identities = 3/25 (12%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 18  YDITVFEN-NLFVTSWRNQSIIRVN 41
             + V  +  ++V    N  ++++ 
Sbjct: 227 LAVAVDSDRTVYVADRGNDRVVKLT 251


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 276,131
Number of extensions: 9817
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 15
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)