BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14262
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 149/332 (44%), Gaps = 37/332 (11%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C +E RC +C++ CD DC +G DE C P F C CIP+ W C
Sbjct: 106 CSQDEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 164
Query: 225 DGFVDCLEDGSDE-PNTC----IHQ-----CFNGQVQCALSKKCIPHNWLCDEEMDCSTD 274
D DC EDGSDE P C + Q C + C LS +CI +W CD DC
Sbjct: 165 DNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCK-- 220
Query: 275 DIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS 334
D +DE+ C + QC+ CI + CD E DC D +DE
Sbjct: 221 ---DKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDE----VGC 267
Query: 335 HNAVLCH-PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC--ENLKCSHKC 391
N LC PN+ +C S +C+ L K C+ DC + DE +C N CSH C
Sbjct: 268 VNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 326
Query: 392 SPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDG 450
+ G C CP G Q + +C D DEC +C Q C N Y C C EG+ L P
Sbjct: 327 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 386
Query: 451 KSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
K+C AV A + F++ ++R++ L+ S
Sbjct: 387 KACKAVG----SIAYLFFTNRHEVRKMTLDRS 414
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 105/225 (46%), Gaps = 26/225 (11%)
Query: 158 GSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPF--CNAECTPGQFSCG-- 213
G+ C NE +C +C++ CDG +C +G DE + C G FSCG
Sbjct: 17 GTAVGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR 75
Query: 214 MGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCST 273
+ +CIP+ W+CDG VDC ++GSDE C + +C KCI ++CD + DC
Sbjct: 76 VNRCIPQFWRCDGQVDC-DNGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDC-- 131
Query: 274 DDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK-- 331
+D +DE C QC S CIP W CD + DC D +DE W +
Sbjct: 132 ---LDGSDEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE-----DGSDE-WPQRC 181
Query: 332 ----YFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
F ++ C E C S +C+ S CDG PDC + DE
Sbjct: 182 RGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDE 225
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 198 GPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIH-QCFNGQVQC-AL 254
G C +F C GKCI W CDG +C +DGSDE TC+ C +G C
Sbjct: 17 GTAVGDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLSVTCKSGDFSCGGR 75
Query: 255 SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEM 314
+CIP W CD ++DC + +DE C + +C KCI ++CD +
Sbjct: 76 VNRCIPQFWRCDGQVDCD-----NGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDR 129
Query: 315 DCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
DC +D +DE S + C P +C SS C+ CD PDC +G DE P
Sbjct: 130 DC-----LDGSDE-----ASCPVLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWP 178
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 94 WDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 153
W PA +++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S
Sbjct: 533 WGTPA--------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
Query: 154 VRVDGSHNAV-------LCHPNEL 170
+ V+G + L HP L
Sbjct: 585 IDVNGGNRKTILEDEKRLAHPFSL 608
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 121 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPN 168
+++++IQ P L +D+ +YW DS L TV G L N
Sbjct: 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 512
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 149/332 (44%), Gaps = 37/332 (11%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C +E RC +C++ CD DC +G DE C P F C CIP+ W C
Sbjct: 88 CSQDEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 146
Query: 225 DGFVDCLEDGSDE-PNTC----IHQ-----CFNGQVQCALSKKCIPHNWLCDEEMDCSTD 274
D DC EDGSDE P C + Q C + C LS +CI +W CD DC
Sbjct: 147 DNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCK-- 202
Query: 275 DIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS 334
D +DE+ C + QC+ CI + CD E DC D +DE
Sbjct: 203 ---DKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDE----VGC 249
Query: 335 HNAVLCH-PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC--ENLKCSHKC 391
N LC PN+ +C S +C+ L K C+ DC + DE +C N CSH C
Sbjct: 250 VNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 308
Query: 392 SPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDG 450
+ G C CP G Q + +C D DEC +C Q C N Y C C EG+ L P
Sbjct: 309 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 368
Query: 451 KSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
K+C AV A + F++ ++R++ L+ S
Sbjct: 369 KACKAVG----SIAYLFFTNRHEVRKMTLDRS 396
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPF--CNAECTPGQFSCG--MGKCIPE 220
C NE +C +C++ CDG +C +G DE + C G FSCG + +CIP+
Sbjct: 6 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 64
Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
W+CDG VDC ++GSDE C + +C KCI ++CD + DC +D +
Sbjct: 65 FWRCDGQVDC-DNGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDC-----LDGS 117
Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK------YFS 334
DE C QC S CIP W CD + DC D +DE W + F
Sbjct: 118 DEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE-----DGSDE-WPQRCRGLYVFQ 170
Query: 335 HNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
++ C E C S +C+ S CDG PDC + DE
Sbjct: 171 GDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDE 207
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIH-QCFNGQVQC-ALSKKCIP 260
C +F C GKCI W CDG +C +DGSDE TC+ C +G C +CIP
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 261 HNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDD 320
W CD ++DC + +DE C + +C KCI ++CD + DC
Sbjct: 64 QFWRCDGQVDCD-----NGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDC---- 113
Query: 321 IVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
+D +DE S + C P +C SS C+ CD PDC +G DE P
Sbjct: 114 -LDGSDE-----ASCPVLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWP 160
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 38 DNTDEDW---DKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSW 94
D DW + Y+ + GT ++A + ++L Q ++ + W
Sbjct: 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW 515
Query: 95 DLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESV 154
PA +++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S+
Sbjct: 516 GTPA--------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567
Query: 155 RVDGSHNAV-------LCHPNEL 170
V+G + L HP L
Sbjct: 568 DVNGGNRKTILEDEKRLAHPFSL 590
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 121 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+++++IQ P L +D+ +YW DS L TV G L
Sbjct: 447 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 490
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 342 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC--ENLKCSHKCSPTPRGAM 399
PN+ +C S +C+ L K C+ DC + DE +C N CSH C+ G
Sbjct: 4 PNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 62
Query: 400 CFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV 458
C CP G Q + +C D DEC +C Q C N Y C C EG+ L P K+C AV
Sbjct: 63 CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG- 121
Query: 459 PQDEPASIIFSSTVDIRRIHLNGS 482
A + F++ ++R++ L+ S
Sbjct: 122 ---SIAYLFFTNRHEVRKMTLDRS 142
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 94 WDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 153
W PA +++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S
Sbjct: 261 WGTPA--------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 154 VRVDGSHNAV-------LCHPNEL 170
+ V+G + L HP L
Sbjct: 313 IDVNGGNRKTILEDEKRLAHPFSL 336
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 121 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPN 168
+++++IQ P L +D+ +YW DS L TV G L N
Sbjct: 193 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 240
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 381 DCENLKCSHKCSPTPRGAMCFCPAGQNPNK--TQCVDADECLIDGSCDQTCTNTHLSYVC 438
+ N C+ KC C C G + C D +EC +G C Q CTN+ ++ C
Sbjct: 7 NVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQC 66
Query: 439 SCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRI 477
C GY LRPD +SC A+ EP ++F++ +DIR++
Sbjct: 67 WCEAGYELRPDRRSCKALG---PEPV-LLFANRIDIRQV 101
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+R+ +A ++G N +V+ ++ P L +D+ D LYW DS + +E +DG+H VL
Sbjct: 138 DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 196
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
R+E + M G R + ++ WP+ L IDY +YW D+ + +E +DGSH +
Sbjct: 226 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 46 KYFKRILNGTHTLALEFNHRNQSLCF--IQQQNVSSVRLRCAQINDLLNSWDLPAPEIFP 103
+Y + N + +AL+F+HR + + + + + L + + +++++ L +P
Sbjct: 107 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLA 165
Query: 104 LD-------------ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLN 149
+D R+E A + G +R L+ ++++ P ++ + + +YW D +
Sbjct: 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 225
Query: 150 TVESVRVDGSHNAVLC 165
+E+ +DGS ++
Sbjct: 226 RIEASSMDGSGRRIIA 241
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 95 DLPAPEIFPLDER---LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTV 151
D ++ +D + +E+A + G +R ++++ + P I +D LYW D H ++
Sbjct: 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL--PHPFAITVFEDSLYWTDWHTKSI 311
Query: 152 ESV 154
S
Sbjct: 312 NSA 314
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CSH C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 7 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 66
Query: 443 GYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNGS 482
G+ L P K+C AV A + F++ ++R++ L+ S
Sbjct: 67 GFQLDPHTKACKAVG----SIAYLFFTNRHEVRKMTLDRS 102
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 94 WDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 153
W PA +++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S
Sbjct: 221 WGTPA--------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272
Query: 154 VRVDGSHNAV-------LCHPNEL 170
+ V+G + L HP L
Sbjct: 273 IDVNGGNRKTILEDEKRLAHPFSL 296
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 121 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPN 168
+++++IQ P L +D+ +YW DS L TV G L N
Sbjct: 153 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 200
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+AGM G +R ++ I WP+ L +DY + LYW D+ LN + +DG++ +
Sbjct: 146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205
Query: 167 PNELRCGSSNQCVALSKFCD 186
GS AL+ F D
Sbjct: 206 ------GSLPHPFALTLFED 219
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 116 ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
E+ +V + P L D+ + LYW DS N +E +DGS VL
Sbjct: 68 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 116
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G R L + + P ++ +D + +YW D + +E +DGS ++
Sbjct: 102 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161
Query: 166 H 166
+
Sbjct: 162 N 162
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+AGM G +R ++ I WP+ L +DY + LYW D+ LN + +DG++ +
Sbjct: 143 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 202
Query: 167 PNELRCGSSNQCVALSKFCD 186
GS AL+ F D
Sbjct: 203 ------GSLPHPFALTLFED 216
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 116 ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
E+ +V + P L D+ + LYW DS N +E +DGS VL
Sbjct: 65 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 113
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G R L + + P ++ +D + +YW D + +E +DGS ++
Sbjct: 99 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 158
Query: 166 H 166
+
Sbjct: 159 N 159
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+AGM G +R ++ I WP+ L +DY + LYW D+ LN + +DG++ +
Sbjct: 143 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 202
Query: 167 PNELRCGSSNQCVALSKFCD 186
GS AL+ F D
Sbjct: 203 ------GSLPHPFALTLFED 216
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 58 LALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDE----------- 106
+A+++ RN + RL + +L S DL P LD
Sbjct: 389 IAVDWVARNLYWTDTGTDRIEVTRLN-GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG 447
Query: 107 ---RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAV 163
++E+A + G +R LV ++ WP+ L +DY++ +YW D+ + +E + DG+ V
Sbjct: 448 EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 507
Query: 164 LC 165
L
Sbjct: 508 LV 509
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
+ ++ + G +VT I P + +D+ LYW D+ + +E R++G+ +L
Sbjct: 365 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI 422
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLS- 435
NK E L+ H +P F Q PN T + C ID G C C + +
Sbjct: 232 NKYTGEGLREIHSDIFSPMDIHAFSQQRQ-PNAT-----NPCGIDNGGCSHLCLMSPVKP 285
Query: 436 -YVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLN 480
Y C+C G L +GK+C ++ + D+RRI L+
Sbjct: 286 FYQCACPTGVKLLENGKTCK-----DGATELLLLARRTDLRRISLD 326
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 116 ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
E+ +V + P L D+ + LYW DS N +E +DGS VL
Sbjct: 65 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 113
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G R L + + P ++ +D + +YW D + +E +DGS ++
Sbjct: 99 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 158
Query: 166 H-----PNELRCGSSNQ 177
+ PN L Q
Sbjct: 159 NSEIYWPNGLTLDYEEQ 175
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+AGM G +R ++ I WP+ L +DY + LYW D+ LN + +DG++ +
Sbjct: 151 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210
Query: 167 PNELRCGSSNQCVALSKFCD 186
GS AL+ F D
Sbjct: 211 ------GSLPHPFALTLFED 224
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 58 LALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDE----------- 106
+A+++ RN + RL + +L S DL P LD
Sbjct: 397 IAVDWVARNLYWTDTGTDRIEVTRLN-GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG 455
Query: 107 ---RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAV 163
++E+A + G +R LV ++ WP+ L +DY++ +YW D+ + +E + DG+ V
Sbjct: 456 EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515
Query: 164 LC 165
L
Sbjct: 516 LV 517
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
+ ++ + G +VT I P + +D+ LYW D+ + +E R++G+ +L
Sbjct: 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI 430
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLS- 435
NK E L+ H +P F Q PN T + C ID G C C + +
Sbjct: 240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQ-PNAT-----NPCGIDNGGCSHLCLMSPVKP 293
Query: 436 -YVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLN 480
Y C+C G L +GK+C ++ + D+RRI L+
Sbjct: 294 FYQCACPTGVKLLENGKTCK-----DGATELLLLARRTDLRRISLD 334
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 116 ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
E+ +V + P L D+ + LYW DS N +E +DGS VL
Sbjct: 73 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G R L + + P ++ +D + +YW D + +E +DGS ++
Sbjct: 107 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166
Query: 166 H-----PNELRCGSSNQ 177
+ PN L Q
Sbjct: 167 NSEIYWPNGLTLDYEEQ 183
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 94 WDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 153
W PA +++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S
Sbjct: 139 WGTPA--------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190
Query: 154 VRVDGSHNAV-------LCHPNEL 170
+ V+G + L HP L
Sbjct: 191 IDVNGGNRKTILEDEKRLAHPFSL 214
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 121 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPN 168
+++++IQ P L +D+ +YW DS L TV G L N
Sbjct: 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CSH C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 68
Query: 443 GYTLRPDGKSCTAV 456
G+ L P K+C AV
Sbjct: 69 GFQLDPHTKACKAV 82
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEG--PFCNAECTPGQFSCG--MGKCIPE 220
C NE +C +C++ CDG +C +G DE + C G FSCG + +CIP+
Sbjct: 8 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 221 SWKCDGFVDCLEDGSDEPN 239
W+CDG VDC ++GSDE
Sbjct: 67 FWRCDGQVDC-DNGSDEQG 84
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIH-QCFNGQVQC-ALSKKCIP 260
C +F C GKCI W CDG +C +DGSDE TC+ C +G C +CIP
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 261 HNWLCDEEMDC 271
W CD ++DC
Sbjct: 66 QFWRCDGQVDC 76
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 302 KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSS-NQCVALSKFC 360
KCI + W+CD +C D +DE + S V C + CG N+C+ C
Sbjct: 19 KCISYKWVCDGSAECQ-----DGSDESQETCLS---VTCKSGDFSCGGRVNRCIPQFWRC 70
Query: 361 DGKPDCSNGEDE 372
DG+ DC NG DE
Sbjct: 71 DGQVDCDNGSDE 82
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 162 AVLCHPNELRCGSS-NQCVALSKFCDGKPDCSNGEDE 197
+V C + CG N+C+ CDG+ DC NG DE
Sbjct: 46 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 82
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 416 ADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIR 475
+EC +G C Q CTN+ ++ C C GY LRPD +SC A+ EP ++F++ +DIR
Sbjct: 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG---PEPV-LLFANRIDIR 56
Query: 476 RI 477
++
Sbjct: 57 QV 58
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
R+E + M G R + ++ WP+ L IDY +YW D+ + +E +DGSH +
Sbjct: 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI 241
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
+R+ +A ++G N +V+ ++ P L +D+ D LYW DS + +E +DG+H VL
Sbjct: 95 DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 154
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/136 (18%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 46 KYFKRILNGTHTLALEFNHRNQSLCF--IQQQNVSSVRLRCAQINDLLNSWDLPAPEIFP 103
+Y + N + +AL+F+HR + + + + + L + + +++++ L +P
Sbjct: 64 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLA 122
Query: 104 LD-------------ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLN 149
+D R+E A + G +R L+ ++++ P ++ + + +YW D +
Sbjct: 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182
Query: 150 TVESVRVDGSHNAVLC 165
+E+ +DGS ++
Sbjct: 183 RIEASSMDGSGRRIIA 198
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 95 DLPAPEIFPLDER---LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTV 151
D ++ +D + +E+A + G +R ++++ + P I +D LYW D H ++
Sbjct: 211 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL--PHPFAITVFEDSLYWTDWHTKSI 268
Query: 152 ESV 154
S
Sbjct: 269 NSA 271
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIH-QCFNGQVQCALSKKCIPHNW 263
C P QFSC G+CIP SW CD DC D SDE +C + CF + +CI NW
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDC-GDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 264 LCDEEMDCSTDDIVDNTDE 282
CD + DC DN+DE
Sbjct: 64 RCDNDNDCG-----DNSDE 77
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN-AECTP-GQFSCGMGKCIP 219
A C PN+ C +S +C+ +S CD DC + DE C C P QF+C G+CI
Sbjct: 2 ARTCPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 220 ESWKCDGFVDCLEDGSDE 237
+W+CD DC D SDE
Sbjct: 61 INWRCDNDNDC-GDNSDE 77
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRC 347
C Q CA S +CIP +W CD + DC D +DE + C P
Sbjct: 3 RTCPPNQFSCA-SGRCIPISWTCDLDDDCG-----DRSDESASCAYP----TCFPLTQFT 52
Query: 348 GSSNQCVALSKFCDGKPDCSNGEDEG 373
++ +C+ ++ CD DC + DE
Sbjct: 53 CNNGRCININWRCDNDNDCGDNSDEA 78
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CSH C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 36 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95
Query: 443 GYTLRPDGKSC 453
G+ L P K+C
Sbjct: 96 GFQLDPHTKAC 106
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CSH C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 68
Query: 443 GYTLRPDGKSC 453
G+ L P K+C
Sbjct: 69 GFQLDPHTKAC 79
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CSH C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 12 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 71
Query: 443 GYTLRPDGKSC 453
G+ L P K+C
Sbjct: 72 GFQLDPHTKAC 82
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C E RC +C++ CD DC +G DE C P F C CIP+ W C
Sbjct: 3 CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 225 DGFVDCLEDGSDE-PNTC 241
D DC EDGSDE P C
Sbjct: 62 DNDPDC-EDGSDEWPQRC 78
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWL 264
C+ +F C GKCI + CD DCL DGSDE + + C QC S CIP W
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCL-DGSDEASCPVLTCGPASFQCN-SSTCIPQLWA 60
Query: 265 CDEEMDC 271
CD + DC
Sbjct: 61 CDNDPDC 67
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 302 KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCD 361
KCI ++CD + DC +D +DE S + C P +C SS C+ CD
Sbjct: 14 KCISRQFVCDSDRDC-----LDGSDE-----ASCPVLTCGPASFQCNSST-CIPQLWACD 62
Query: 362 GKPDCSNGEDEGP 374
PDC +G DE P
Sbjct: 63 NDPDCEDGSDEWP 75
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CS+ C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 36 NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95
Query: 443 GYTLRPDGKSC 453
G+ L P K+C
Sbjct: 96 GFQLDPHTKAC 106
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTE 442
N CS+ C+ G C CP G Q + +C D DEC +C Q C N Y C C E
Sbjct: 12 NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 71
Query: 443 GYTLRPDGKSC 453
G+ L P K+C
Sbjct: 72 GFQLDPHTKAC 82
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 162 AVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP-FC---------NAECTPGQFS 211
+ C P +C SS C+ CD PDC +G DE P C ++ C+ +F
Sbjct: 4 VLTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 62
Query: 212 CGMGKCIPESWKCDGFVDCLEDGSDEPNTCI 242
C G+CI SW+CDG DC +D SDE N +
Sbjct: 63 CLSGECIHSSWRCDGGPDC-KDKSDEENCAV 92
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE-PNTC----IHQ-----CFNGQVQCAL 254
C P F C CIP+ W CD DC EDGSDE P C + Q C + C L
Sbjct: 7 CGPASFQCNSSTCIPQLWACDNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-L 64
Query: 255 SKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
S +CI +W CD DC D +DE+
Sbjct: 65 SGECIHSSWRCDGGPDCK-----DKSDEE 88
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 300 SKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK------YFSHNAVLCHPNELRCGSSNQC 353
S CIP W CD + DC D +DE W + F ++ C E C S +C
Sbjct: 16 SSTCIPQLWACDNDPDCE-----DGSDE-WPQRCRGLYVFQGDSSPCSAFEFHC-LSGEC 68
Query: 354 VALSKFCDGKPDCSNGEDE 372
+ S CDG PDC + DE
Sbjct: 69 IHSSWRCDGGPDCKDKSDE 87
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC 241
+C PG+F+C +CI E WKCDG DCL++ + P C
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC 42
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+A + G R L + P +L +D L+W DS L +ES + G++ VL
Sbjct: 457 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLED 516
Query: 167 PNELRCGSSNQCVALSKF 184
N L Q V L+ F
Sbjct: 517 SNIL------QPVGLTVF 528
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
+ +A M+G +V + +P + +D+ LYW D+ N +E ++DG H VL
Sbjct: 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV 118
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC- 165
++++A M G R+ LV N+ + L IDY + LYW D N +ES + G + V+
Sbjct: 147 KIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205
Query: 166 ---HPNEL 170
HP L
Sbjct: 206 DLPHPFGL 213
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G++R LV K++ P +L +D + +YW + ++ +DGS L
Sbjct: 103 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162
Query: 166 HPNELRC 172
PN R
Sbjct: 163 -PNVGRA 168
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDG 158
R+E + + G NR L NI P L + N LYW D +E + + G
Sbjct: 499 RRIESSDLSGANRIVLEDSNILQPVGLTVFENW--LYWIDKQQQMIEKIDMTG 549
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+A + G R L + P +L +D L+W DS L +ES + G++ VL
Sbjct: 455 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLED 514
Query: 167 PNELRCGSSNQCVALSKF 184
N L Q V L+ F
Sbjct: 515 SNIL------QPVGLTVF 526
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
+ +A M+G +V + +P + +D+ LYW D+ N +E ++DG H VL
Sbjct: 59 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV 116
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC- 165
++++A M G R+ LV N+ + L IDY + LYW D N +ES + G + V+
Sbjct: 145 KIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 203
Query: 166 ---HPNEL 170
HP L
Sbjct: 204 DLPHPFGL 211
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G++R LV K++ P +L +D + +YW + ++ +DGS L
Sbjct: 101 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 160
Query: 166 HPNELRC 172
PN R
Sbjct: 161 -PNVGRA 166
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDG 158
R+E + + G NR L NI P L + N LYW D +E + + G
Sbjct: 497 RRIESSDLSGANRIVLEDSNILQPVGLTVFENW--LYWIDKQQQMIEKIDMTG 547
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+ +A +HG + ++ +++ P + +D+ ++W DS L+ +E ++DG+ VL
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 95 DLPAPEIFPLD-------------ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDIL 141
DL +PE LD +R+E A M G R L + P +V D + L
Sbjct: 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136
Query: 142 YWCDSHLN--TVESVRVDGSHNAVLCHPN 168
YW D + + +E+ +DG++ +L N
Sbjct: 137 YWTDWNRDNPKIETSHMDGTNRRILAQDN 165
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC 165
+ +A M+G +V + +P + +D+ LYW D+ N +E ++DG H VL
Sbjct: 66 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV 123
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+A + G R L + P +L +D L+W DS L +ES + G++ VL
Sbjct: 462 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLED 521
Query: 167 PNELRCGSSNQCVALSKF 184
N L Q V L+ F
Sbjct: 522 SNIL------QPVGLTVF 533
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC- 165
++++A M G R+ LV N+ + L IDY + LYW D N +ES + G + V+
Sbjct: 152 KIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 210
Query: 166 ---HPNEL 170
HP L
Sbjct: 211 DLPHPFGL 218
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSHNAVLC 165
R+E + + G++R LV K++ P +L +D + +YW + ++ +DGS L
Sbjct: 108 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 167
Query: 166 HPNELRC 172
PN R
Sbjct: 168 -PNVGRA 173
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDG 158
R+E + + G NR L NI P L + N LYW D +E + + G
Sbjct: 504 RRIESSDLSGANRIVLEDSNILQPVGLTVFENW--LYWIDKQQQMIEKIDMTG 554
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 179 VALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE 237
++ K CDG DC + DE C C F C G CIP ++C+G VDC+ G DE
Sbjct: 217 ISQMKACDGINDCGDQSDE--LCCKACQGKGFHCKSGVCIPSQYQCNGEVDCI-TGEDE 272
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 210 FSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEM 269
F C GK I + CDG DC D SDE C C C S CIP + C+ E+
Sbjct: 209 FQCVNGKYISQMKACDGINDC-GDQSDE--LCCKACQGKGFHCK-SGVCIPSQYQCNGEV 264
Query: 270 DCSTDD 275
DC T +
Sbjct: 265 DCITGE 270
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 202 NAECTPGQFSCG--MGKCIPESWKCDGFVDCLEDGSDE 237
+ C G FSCG + +CIP+ W+CDG VDC ++GSDE
Sbjct: 4 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC-DNGSDE 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 162 AVLCHPNELRCGSS-NQCVALSKFCDGKPDCSNGEDE 197
+V C + CG N+C+ CDG+ DC NG DE
Sbjct: 4 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 337 AVLCHPNELRCGSS-NQCVALSKFCDGKPDCSNGEDE 372
+V C + CG N+C+ CDG+ DC NG DE
Sbjct: 4 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQ 244
C+ QF C G+CIPE W CDG DC + + C +Q
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDC 31
H C + Q +C S +CIP +W CD + DC
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDC 30
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 243 HQCFNGQVQCALSKKCIPHNWLCDEEMDC 271
H C + Q +C S +CIP +W CD + DC
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDC 30
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDC 316
H C + Q +C S +CIP +W CD + DC
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDC 30
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 86 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 48 LDNGDCDQFCHEEQASVVCSCARGYTLADNGKAC 81
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 86 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 46 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 7 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 9 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 42
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 91 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 124
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 5 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 6 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 6 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 3 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 36
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 5 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 4 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 7 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
Length = 51
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 4 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 52
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 6 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 47 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 5 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 46 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 47 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
L +G CDQ C S VCSC GYTL +GK+C
Sbjct: 48 LDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 81
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 205 CTPGQFSC-GMGKCIPESWKCDGFVDCLEDGSDE 237
C P FSC G C+PE W CDG DC DG+DE
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDC-ADGADE 41
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C P+ C ++ CV CDG DC++G DE
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C P+ C ++ CV CDG DC++G DE
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE 237
C P F C CIP+ W CD DC EDGSDE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDC-EDGSDE 33
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 387 CSH-KCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSC-DQTCTNTHLSYVCSCTEGY 444
C H +C T C CP G +CVD DEC + C + TC N + C+C EG+
Sbjct: 14 CKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGF 73
Query: 445 TLRP 448
P
Sbjct: 74 EPGP 77
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 202 NAECTPGQFSC-----GMGKCIPESWKCDGFVDCLEDGSDE 237
++ C PGQF C G+C P+ W CDG DC +DG DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDE 41
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 162 AVLCHPNELRC----GSSNQCVALSKFCDGKPDCSNGEDE 197
+ C P + RC G+ +C CDG PDC +G DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 337 AVLCHPNELRC----GSSNQCVALSKFCDGKPDCSNGEDE 372
+ C P + RC G+ +C CDG PDC +G DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 198 GPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCI 242
G C +F C GKCI W CDG +C +DGSDE TC+
Sbjct: 1 GSAVGDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCL 45
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 158 GSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
GS C NE +C +C++ CDG +C +G DE
Sbjct: 1 GSAVGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDE 39
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 414 VDADECLIDGSCDQTC-TNTHLSYVCSCTEGYTLRPDGKSCT-AVNVP 459
+DA + +G C Q C T +CSCT GY L PD KSC AV P
Sbjct: 84 LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFP 131
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 203 AECTPGQFSC-----GMGKCIPESWKCDGFVDCLEDGSDE 237
C PGQF C G+C P+ W CDG DC +DG DE
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDE 43
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 165 CHPNELRC----GSSNQCVALSKFCDGKPDCSNGEDE 197
C P + RC G+ +C CDG PDC +G DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 340 CHPNELRC----GSSNQCVALSKFCDGKPDCSNGEDE 372
C P + RC G+ +C CDG PDC +G DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 205 CTPGQFSC-GMGKCIPESWKCDGFVDCLEDGSDE 237
C P FSC G C+PE W CDG DC DG+DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCA-DGADE 39
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C P+ C ++ CV CDG DC++G DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C P+ C ++ CV CDG DC++G DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 414 VDADECLIDGSCDQTC-TNTHLSYVCSCTEGYTLRPDGKSCT-AVNVP 459
+DA + +G C Q C T +CSCT GY L PD KSC AV P
Sbjct: 84 LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFP 131
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
C+ +F C G+CI SW+CDG DC +D SDE N
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDC-KDKSDEEN 35
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 391 CSPTPRGAMCFCPAGQNPN--KTQCVDADECLIDGSCDQTCTNTHLSYVCSC--TEGYTL 446
C P C CP G N C D DEC + C Q C N Y C C +G+ L
Sbjct: 18 CKNIPGDFECECPEGYRYNLKSKSCEDIDECS-ENMCAQLCVNYPGGYTCYCDGKKGFKL 76
Query: 447 RPDGKSCTAVN 457
D KSC V+
Sbjct: 77 AQDQKSCEVVS 87
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 197
C +E+ CG+ S QC+ +S CDG+ DC +GEDE
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 340 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 372
C +E+ CG+ S QC+ +S CDG+ DC +GEDE
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 36
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 205 CTPGQFSCGM--GKCIPESWKCDGFVDCLEDGSDEPN 239
C + SCG +CIP SW+CDG DC + G DE N
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDC-DSGEDEEN 38
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 197
C +E+ CG+ S QC+ +S CDG+ DC +GEDE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 340 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 372
C +E+ CG+ S QC+ +S CDG+ DC +GEDE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 205 CTPGQFSCGM--GKCIPESWKCDGFVDCLEDGSDEPN 239
C + SCG +CIP SW+CDG DC + G DE N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDC-DSGEDEEN 36
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 412 QCVDADECLI----DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
VD DEC + SCD C N Y CSC GY L D ++C
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 413 CVDADECLI----DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
VD DEC + SCD C N Y CSC GY L D ++C
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV 456
L +G CDQ C CSC GY L D KSC +
Sbjct: 3 LDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE 237
EC QF C +CIP W+CD DCL D SDE
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCL-DHSDE 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
+C Q QC +++CIP W CDE+ DC +D++DED
Sbjct: 7 ECEKDQFQCR-NERCIPSVWRCDEDDDC-----LDHSDED 40
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 244 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
+C Q QC +++CIP W CDE+ DC +D++DED
Sbjct: 7 ECEKDQFQCR-NERCIPSVWRCDEDDDC-----LDHSDED 40
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 289 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
+C Q QC +++CIP W CDE+ DC +D++DED
Sbjct: 7 ECEKDQFQCR-NERCIPSVWRCDEDDDC-----LDHSDED 40
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 420 LIDGSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSC 453
+ +G C+Q C N+ VCSCTEGY L + KSC
Sbjct: 7 IKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 41
>pdb|1RFN|B Chain B, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|B Chain B, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|D Chain D, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|B Chain B, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 57
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 420 LIDGSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSC 453
+ +G C+Q C N+ VCSCTEGY L + KSC
Sbjct: 5 IKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 39
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 420 LIDGSCDQTCTNTH-LSYVCSCTEGYTLRPDGKSC 453
+ +G C+Q C N+ VCSCTEGY L + KSC
Sbjct: 4 IKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 399 MCFC-PAGQNPN-KTQCVDADECLID-GSCDQTCTN-THLSYVCSCTEGYTLRPDGKSCT 454
+CFC PA + N +T D C+ + G C+Q C++ T C C EGY+L DG SCT
Sbjct: 69 ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
Query: 455 -AVNVP 459
V P
Sbjct: 129 PTVEYP 134
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 411 TQCVDADEC-LIDGSC-DQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
TQC D DEC + G C + C NT S+ C C G TL G+ C
Sbjct: 102 TQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 203 AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
A C Q++C +CI ++W CD DC DGSDE N
Sbjct: 5 ASCLDTQYTCDNHQCISKNWVCDTDNDC-GDGSDEKN 40
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 155 RVDGSHNAVLCHPNELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGP 199
+++G+H C +CG + Q C++ CDG DC N DE P
Sbjct: 47 KIEGTH----CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 88
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 340 CHPNELRCGSSNQ-CVALSKFCDGKPDCSNGEDEGP 374
C +CG + Q C++ CDG DC N DE P
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 88
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 399 MCFC-PAGQNPN-KTQCVDADECLID-GSCDQTCTN-THLSYVCSCTEGYTLRPDGKSCT 454
+CFC PA + N +T D C+ + G C+Q C++ T C C EGY+L DG SCT
Sbjct: 69 ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 399 MCFC-PAGQNPN-KTQCVDADECLID-GSCDQTCTN-THLSYVCSCTEGYTLRPDGKSCT 454
+CFC PA + N +T D C+ + G C+Q C++ T C C EGY+L DG SCT
Sbjct: 69 ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 399 MCFC-PAGQNPN-KTQCVDADECLID-GSCDQTCTN-THLSYVCSCTEGYTLRPDGKSCT 454
+CFC PA + N +T D C+ + G C+Q C++ T C C EGY+L DG SCT
Sbjct: 69 ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
>pdb|1KLI|L Chain L, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|L Chain L, Crystal Structure Of Uninhibited Factor Viia
Length = 69
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 12 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 45
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 424 SCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSS 470
C C SY CSC +GY L D K C VP D+ A + +S
Sbjct: 53 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC----VPHDQCACGVLTS 95
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 197
C +E +CG + QC++ CDG DC NGEDE
Sbjct: 55 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 340 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 372
C +E +CG + QC++ CDG DC NGEDE
Sbjct: 55 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 47 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 80
>pdb|1JBU|L Chain L, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1YGC|L Chain L, Short Factor Viia With A Small Molecule Inhibitor
Length = 63
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 424 SCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSS 470
C C SY CSC +GY L D K C VP D+ A + +S
Sbjct: 12 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC----VPHDQCACGVLTS 54
>pdb|1W8B|L Chain L, Factor7 - 413 Complex
Length = 57
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 8 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 41
>pdb|1CVW|L Chain L, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1W7X|L Chain L, Factor7- 413 Complex
pdb|4ISI|L Chain L, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 55
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCTN-THLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C++ T C C EGY+L DG SCT
Sbjct: 48 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 81
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCTN-THLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C++ T C C EGY+L DG SCT
Sbjct: 54 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 87
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 47 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 80
>pdb|2BZ6|L Chain L, Orally Available Factor7a Inhibitor
Length = 53
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 422 DGSCDQTCT-NTHLSYVCSCTEGYTLRPDGKSCT 454
+G C+Q C+ +T C C EGY+L DG SCT
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 205 CTPGQFSCGM-GKCIPESWKCDGFVDCLEDGSDEPN 239
C +F C + G CIP W+CDG DC+ D SDE +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCM-DSSDEKS 38
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 5 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
C + QC L CIP W CD + DC +D++DE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDC-----MDSSDE 36
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 245 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
C + QC L CIP W CD + DC +D++DE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDC-----MDSSDE 36
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 290 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 327
C + QC L CIP W CD + DC +D++DE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDC-----MDSSDE 36
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
CH +E +C C+ L CDG DC + DE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
CH +E +C C+ L CDG DC + DE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 205 CTPGQFSCGMGK-CIPESWKCDGFVDCLEDGSDE 237
CT QF C G CI ++CDG DC D SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDC-RDNSDE 39
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 1 MIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
M+ C + Q +CA CI + CD DC DN+DE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCR-----DNSDE 39
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 414 VDADECLIDGS---------CDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
VD DEC C C N Y CSC GY L+ D SC A
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 166 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 199
H +E R G +C+ FCDG+ DC +G DE P
Sbjct: 57 HESECR-GDVPECIHDLLFCDGEKDCRDGSDEDP 89
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 341 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
H +E R G +C+ FCDG+ DC +G DE P
Sbjct: 57 HESECR-GDVPECIHDLLFCDGEKDCRDGSDEDP 89
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 401 FCPAGQ----NPNKTQCVDADECL-IDGSCDQ-TCTNTHLSYVCSCTEGYTLRPDGKSC 453
CP G+ NP D DEC + G C C NT S+ C C GY L D + C
Sbjct: 103 LCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 332 YFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKC 391
+ S + ++ P E C N+C LSK C +DC N + S+ C
Sbjct: 27 FSSFSEIITTPMET-CDDINECATLSKV---------------SCGKFSDCWNTEGSYDC 70
Query: 392 SPTP-----RGAMCFCPAGQNPNKTQCVDADECLIDG-SCDQT--CTNTHLSYVCSCTEG 443
+P GA F +N ++ C D DEC CD + C NT SY C C G
Sbjct: 71 VCSPGYEPVSGAKTF----KNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPG 126
Query: 444 YTLR 447
+ R
Sbjct: 127 WKPR 130
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 401 FCPAGQ----NPNKTQCVDADECL-IDGSCDQ-TCTNTHLSYVCSCTEGYTLRPDGKSC 453
CP G+ NP D DEC + G C C NT S+ C C GY L D + C
Sbjct: 103 LCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 203 AECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDE 237
A C P +F C G CI S +CD DC +D SDE
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDC-KDLSDE 35
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 415 DADECLIDG----SCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
D DEC + +CD C N + CSC GY L + ++C+
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS 166
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 413 CVDADEC--LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
D +EC +D C C N Y CSC Y L D K+C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,691,599
Number of Sequences: 62578
Number of extensions: 757687
Number of successful extensions: 2049
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 455
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)