RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14262
(482 letters)
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 143 bits (362), Expect = 5e-37
Identities = 99/304 (32%), Positives = 129/304 (42%), Gaps = 31/304 (10%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C +E RC +C++ CD DC +G DE C P F C CIP+ W C
Sbjct: 88 CSQDEFRC-HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 146
Query: 225 DGFVDCLEDGSDEPN----------TCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTD 274
D DC EDGSDE C + C S +CI +W CD DC
Sbjct: 147 DNDPDC-EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK-- 202
Query: 275 DIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFS 334
D +DE+ C + QC+ CI + CD E DC D +DE
Sbjct: 203 ---DKSDEENCAVATCRPDEFQCS-DGNCIHGSRQCDREYDCK-----DMSDEV---GCV 250
Query: 335 HNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NNKADCENLKCSHKCS 392
+ + PN+ +C S +C+ L K C+ DC + DE N+ N CSH C+
Sbjct: 251 NVTLCEGPNKFKCH-SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCN 309
Query: 393 PTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGK 451
G C CP G Q + +C D DEC +C Q C N Y C C EG+ L P K
Sbjct: 310 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 369
Query: 452 SCTA 455
+C A
Sbjct: 370 ACKA 373
Score = 116 bits (292), Expect = 6e-28
Identities = 88/332 (26%), Positives = 125/332 (37%), Gaps = 62/332 (18%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCG--MGKCIPE 220
C NE +C +C++ CDG +C +G DE + C G FSCG + +CIP+
Sbjct: 6 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 64
Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
W+CDG VDC ++GSDE C + +C KCI ++CD + DC D +
Sbjct: 65 FWRCDGQVDC-DNGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL-----DGS 117
Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW--DKYFSHNAV 338
DE C QC S CIP W CD + DC D D + F ++
Sbjct: 118 DEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCE--DGSDEWPQRCRGLYVFQGDSS 174
Query: 339 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP-----------------------F 375
C E C S +C+ S CDG PDC + DE
Sbjct: 175 PCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQ 233
Query: 376 CNNKADC------ENLKCSHKCSPT-----------PRGAMC----FCPAGQNPNKTQCV 414
C+ + DC C +C C + +C
Sbjct: 234 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 293
Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTL 446
+ +G C C + + Y C C +G+ L
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQL 325
Score = 100 bits (249), Expect = 1e-22
Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 26/234 (11%)
Query: 202 NAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC--IHQCFNGQVQCA-LSKKC 258
C +F C GKCI W CDG +C +DGSDE C +G C +C
Sbjct: 3 GDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLSVTCKSGDFSCGGRVNRC 61
Query: 259 IPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCST 318
IP W CD ++DC + +DE C + +C KCI ++CD + DC
Sbjct: 62 IPQFWRCDGQVDCD-----NGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL- 114
Query: 319 DDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNN 378
D +DE + C P +C +S+ C+ CD PDC +G DE P
Sbjct: 115 ----DGSDEASCPVLT-----CGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWP-QRC 163
Query: 379 KADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNT 432
+ S CS C +G+ + + D D S ++ C
Sbjct: 164 RGLYVFQGDSSPCSAF----EFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVA 213
Score = 83.7 bits (206), Expect = 3e-17
Identities = 49/227 (21%), Positives = 73/227 (32%), Gaps = 12/227 (5%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C E C S +C+ S CDG PDC + DE A C P +F C G CI S +C
Sbjct: 176 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234
Query: 225 DGFVDCLEDGSDEPN--TCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
D DC +D SDE + +C S +CI + +C+ DC D +DE
Sbjct: 235 DREYDC-KDMSDEVGCVNVTLCEGPNKFKCH-SGECITLDKVCNMARDCR-----DWSDE 287
Query: 283 DWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHP 342
+ S C ++ E C + D + C
Sbjct: 288 PIKECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 345
Query: 343 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSH 389
+ +C F + + ++
Sbjct: 346 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 392
Score = 53.7 bits (128), Expect = 8e-08
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
+++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S+ V+G + +
Sbjct: 520 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 579
Query: 167 PNE 169
+
Sbjct: 580 DEK 582
Score = 32.9 bits (74), Expect = 0.26
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 112 GMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+ +++++IQ P L +D+ +YW DS L TV G L
Sbjct: 438 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 490
Score = 27.8 bits (61), Expect = 9.7
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVLC 165
+ A G R L + P ++V+D +YW D ++ ++G L
Sbjct: 476 TVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535
Query: 166 HPN 168
N
Sbjct: 536 TEN 538
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 136 bits (343), Expect = 2e-34
Identities = 101/341 (29%), Positives = 129/341 (37%), Gaps = 64/341 (18%)
Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWK 223
C + CG N+C+ CDG+ DC NG DE C+ +F C GKCI +
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFV 124
Query: 224 CDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCS-----TDDIVD 278
CD DCL DGSDE + + C QC S CIP W CD + DC
Sbjct: 125 CDSDRDCL-DGSDEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCR 182
Query: 279 NTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAV 338
C + C S +CI +W CD DC D +DE+ +
Sbjct: 183 GLYVFQGDSSPCSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDEE-----NCAVA 231
Query: 339 LCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP------------------------ 374
C P+E +C C+ S+ CD + DC + DE
Sbjct: 232 TCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 290
Query: 375 -FCNNKADCE------------------NLKCSHKCSPTPRGAMCFCPAGQN-PNKTQCV 414
CN DC N CSH C+ G C CP G + +C
Sbjct: 291 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 350
Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
D DEC +C Q C N Y C C EG+ L P K+C A
Sbjct: 351 DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 391
Score = 120 bits (302), Expect = 3e-29
Identities = 90/342 (26%), Positives = 129/342 (37%), Gaps = 68/342 (19%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCG--MGKCIPE 220
C NE +C +C++ CDG +C +G DE + C G FSCG + +CIP+
Sbjct: 24 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 82
Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
W+CDG VDC ++GSDE C + +C KCI ++CD + DC D +
Sbjct: 83 FWRCDGQVDC-DNGSDEQGCPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCL-----DGS 135
Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKY-----FSH 335
DE C QC S CIP W CD + DC D +DE + F
Sbjct: 136 DEASCPVLTCGPASFQCN-SSTCIPQLWACDNDPDC-----EDGSDEWPQRCRGLYVFQG 189
Query: 336 NAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP--------------------- 374
++ C E C S +C+ S CDG PDC + DE
Sbjct: 190 DSSPCSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHG 248
Query: 375 --FCNNKADC-----ENLKCSHKCSPTPRGAMCF----------------CPAGQNPNKT 411
C+ + DC E + P C C +
Sbjct: 249 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 308
Query: 412 QCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
+C + +G C C + + Y C C +G+ L +
Sbjct: 309 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 350
Score = 101 bits (252), Expect = 6e-23
Identities = 66/252 (26%), Positives = 95/252 (37%), Gaps = 29/252 (11%)
Query: 185 CDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC--I 242
+ C +F C GKCI W CDG +C +DGSDE
Sbjct: 7 WTVALLLAAAGTA---VGDRCERNEFQCQDGKCISYKWVCDGSAEC-QDGSDESQETCLS 62
Query: 243 HQCFNGQVQCA-LSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSK 301
C +G C +CIP W CD ++DC + +DE C + +C
Sbjct: 63 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD-----NGSDEQGCPPKTCSQDEFRCH-DG 116
Query: 302 KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCD 361
KCI ++CD + DC D +DE S + C P +C +S+ C+ CD
Sbjct: 117 KCISRQFVCDSDRDCL-----DGSDEA-----SCPVLTCGPASFQC-NSSTCIPQLWACD 165
Query: 362 GKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLI 421
PDC +G DE P + S CS C +G+ + + D
Sbjct: 166 NDPDCEDGSDEWP-QRCRGLYVFQGDSSPCSAF----EFHCLSGECIHSSWRCDGGPDCK 220
Query: 422 DGSCDQTCTNTH 433
D S ++ C
Sbjct: 221 DKSDEENCAVAT 232
Score = 86.8 bits (214), Expect = 3e-18
Identities = 49/227 (21%), Positives = 73/227 (32%), Gaps = 12/227 (5%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C E C S +C+ S CDG PDC + DE A C P +F C G CI S +C
Sbjct: 194 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 252
Query: 225 DGFVDCLEDGSDEPNTCIHQ--CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
D DC +D SDE + +C S +CI + +C+ DC D +DE
Sbjct: 253 DREYDC-KDMSDEVGCVNVTLCEGPNKFKCH-SGECITLDKVCNMARDCR-----DWSDE 305
Query: 283 DWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHP 342
+ S C ++ E C + D + C
Sbjct: 306 PIKECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 363
Query: 343 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSH 389
+ +C F + + ++
Sbjct: 364 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
Score = 54.8 bits (131), Expect = 4e-08
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSH 160
+++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S+ V+G +
Sbjct: 538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591
Score = 49.1 bits (116), Expect = 2e-06
Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 19/184 (10%)
Query: 157 DGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPF---------------- 200
G N LC S +C+ L K C+ DC + DE
Sbjct: 265 VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSH 324
Query: 201 -CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCI 259
CN + C G + +C+ +C +D C++ + QC +
Sbjct: 325 VCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCE-EGFQL 382
Query: 260 PHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTD 319
+ + + N E + + + +D
Sbjct: 383 DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 442
Query: 320 DIVD 323
Sbjct: 443 LSQR 446
Score = 33.3 bits (75), Expect = 0.19
Identities = 24/187 (12%), Positives = 46/187 (24%), Gaps = 30/187 (16%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDN----------------------- 39
+ G + C++ +C D
Sbjct: 327 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 386
Query: 40 --TDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLP 97
+ N + + + +NV ++ A +
Sbjct: 387 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 446
Query: 98 APEIFPLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD 157
LD + +++++IQ P L +D+ +YW DS L TV
Sbjct: 447 MICSTQLDR-----AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501
Query: 158 GSHNAVL 164
G L
Sbjct: 502 GVKRKTL 508
Score = 29.0 bits (64), Expect = 3.7
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 106 ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVL 164
+ A G R L +N P ++V+D +YW D ++ ++G L
Sbjct: 493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552
Score = 29.0 bits (64), Expect = 4.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW 44
+C + QC KCI + W+CD +C D +DE
Sbjct: 22 DRCERNEFQCQ-DGKCISYKWVCDGSAECQ-----DGSDESQ 57
Score = 29.0 bits (64), Expect = 4.7
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 402 CPAGQNPNKTQCVDADECLIDGSCDQTC------TNTHLSYVCSCTEGYTLRPDGKSCTA 455
P G N + + +G C C + C+C +G L D +SC
Sbjct: 657 QPRGVNWCERTTLS------NGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL- 709
Query: 456 VNVPQDEPASIIFSSTVDIRRIHLNGS 482
E + + + R+ ++ +
Sbjct: 710 -----TEAEAAVATQETSTVRLKVSST 731
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 76.2 bits (188), Expect = 1e-17
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C E RC +C++ CD DC +G DE C P F C CIP+ W C
Sbjct: 3 CSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 225 DGFVDCLEDGSDEPN 239
D DC EDGSDE
Sbjct: 62 DNDPDC-EDGSDEWP 75
Score = 73.8 bits (182), Expect = 1e-16
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNW 263
C+ +F C GKCI + CD DC DGSDE + + C QC S CIP W
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDC-LDGSDEASCPVLTCGPASFQCN-SSTCIPQLW 59
Query: 264 LCDEEMDCSTDDIVDNTDED 283
CD + DC D +DE
Sbjct: 60 ACDNDPDCE-----DGSDEW 74
Score = 56.1 bits (136), Expect = 2e-10
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 290 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGS 349
C + +C KCI ++CD + DC D +DE S + C P +C +
Sbjct: 3 CSQAEFRCH-DGKCISRQFVCDSDRDCL-----DGSDEA-----SCPVLTCGPASFQC-N 50
Query: 350 SNQCVALSKFCDGKPDCSNGEDE 372
S+ C+ CD PDC +G DE
Sbjct: 51 SSTCIPQLWACDNDPDCEDGSDE 73
Score = 31.1 bits (71), Expect = 0.11
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
C QC S CIP W CD + DC D +DE
Sbjct: 40 LTCGPASFQCN-SSTCIPQLWACDNDPDCE-----DGSDEW 74
Score = 30.7 bits (70), Expect = 0.18
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 5 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
C + +C KCI ++CD + DC D +DE
Sbjct: 3 CSQAEFRCH-DGKCISRQFVCDSDRDCL-----DGSDEA 35
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 74.7 bits (184), Expect = 1e-16
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 364 PDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLID 422
P N +G N+ N CS+ C+ G C CP G Q + +C D DEC
Sbjct: 16 PTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP 75
Query: 423 GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
+C Q C N Y C C EG+ L P K+C
Sbjct: 76 DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 50.8 bits (122), Expect = 2e-08
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 389 HKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVCSCTEGYTLR 447
H + +ECL + G C C + + Y C C +G+ L
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQG--AMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61
Query: 448 PDGKSCTAVN 457
C ++
Sbjct: 62 AQR-RCEDID 70
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 71.5 bits (176), Expect = 7e-16
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFC--NAECTPGQFSCGMGKCIPESW 222
C PN+ C S +C+ +S CD DC + DE C QF+C G+CI +W
Sbjct: 5 CPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 223 KCDGFVDCLEDGSDEPN 239
+CD DC D SDE
Sbjct: 64 RCDNDNDC-GDNSDEAG 79
Score = 71.2 bits (175), Expect = 1e-15
Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 204 ECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQ--CFNGQVQCALSKKCIPH 261
C P QFSC G+CIP SW CD DC D SDE +C + Q C + +CI
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDC-GDRSDESASCAYPTCFPLTQFTCN-NGRCINI 61
Query: 262 NWLCDEEMDCSTDDIVDNTDE 282
NW CD + DC DN+DE
Sbjct: 62 NWRCDNDNDCG-----DNSDE 77
Score = 53.8 bits (130), Expect = 1e-09
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRC 347
C Q CA S +CIP +W CD + DC D +DE + + C
Sbjct: 3 RTCPPNQFSCA-SGRCIPISWTCDLDDDCG-----DRSDESASCAYPTC---FPLTQFTC 53
Query: 348 GSSNQCVALSKFCDGKPDCSNGEDE 372
+ +C+ ++ CD DC + DE
Sbjct: 54 NNG-RCININWRCDNDNDCGDNSDE 77
Score = 37.6 bits (88), Expect = 5e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCEN 384
C PN+ C S +C+ +S CD DC + DE C
Sbjct: 5 CPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPL 48
Score = 31.5 bits (72), Expect = 0.10
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
C Q CA S +CIP +W CD + DC D +DE
Sbjct: 3 RTCPPNQFSCA-SGRCIPISWTCDLDDDCG-----DRSDES 37
Score = 29.2 bits (66), Expect = 0.56
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
Q C + +CI NW CD + DC DN+DE
Sbjct: 44 TCFPLTQFTCN-NGRCININWRCDNDNDCG-----DNSDE 77
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 71.8 bits (176), Expect = 3e-14
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E + M G NR L N+ P+ L D L W D+ + E + +
Sbjct: 147 KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206
Score = 59.1 bits (143), Expect = 5e-10
Identities = 14/60 (23%), Positives = 34/60 (56%)
Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+ + +A +HG + ++ +++ P + +D+ ++W DS L+ +E ++DG+ VL
Sbjct: 57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116
Score = 47.9 bits (114), Expect = 3e-06
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNT--VESVRVDGSHNAVL 164
R+E A M G R L + P +V D + LYW D + + +E+ +DG++ +L
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161
Score = 43.7 bits (103), Expect = 6e-05
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 108 LEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
LE+ M + + L D ++YW D ++ + G +
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI 73
Score = 41.0 bits (96), Expect = 5e-04
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
R E R ++ +Q+P ++ LY+ D N+V ++ + S H
Sbjct: 190 RAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246
Query: 167 P 167
P
Sbjct: 247 P 247
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 66.5 bits (163), Expect = 5e-14
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCT--E 442
+ C P C CP G N C D DEC + C Q C N Y C C +
Sbjct: 14 GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS-ENMCAQLCVNYPGGYTCYCDGKK 72
Query: 443 GYTLRPDGKSCTAVN 457
G+ L D KSC V+
Sbjct: 73 GFKLAQDQKSCEVVS 87
Score = 47.7 bits (114), Expect = 2e-07
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 415 DADECLID--GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
D DEC + C N + C C EGY KSC ++
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDID 46
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 67.9 bits (165), Expect = 2e-12
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 387 CSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYT 445
CSH C+ G C CP G Q + +C D DEC +C Q C N Y C C EG+
Sbjct: 10 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQ 69
Query: 446 LRPDGKSCTAVN 457
L P K+C AV
Sbjct: 70 LDPHTKACKAVG 81
Score = 60.6 bits (146), Expect = 3e-10
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
+++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S+ V+G + +
Sbjct: 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 285
Query: 167 PNE 169
+
Sbjct: 286 DEK 288
Score = 37.9 bits (87), Expect = 0.006
Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 28/190 (14%)
Query: 3 HQCFNG----QVQCALSKKCIPHNWLCDEEMDCSTDD-----IVDNTDEDWDKYFKRILN 53
C N + QC + PH C + V D +Y I N
Sbjct: 51 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 110
Query: 54 GTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQIN-----DLLNSWDLPAPEIFPLD--- 105
+ +AL+ + + + + + + D + S D+ AP+ +D
Sbjct: 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170
Query: 106 ----------ERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESV 154
+ A G R L +N P ++V+D +YW D ++
Sbjct: 171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230
Query: 155 RVDGSHNAVL 164
++G L
Sbjct: 231 GLNGVDIYSL 240
Score = 36.0 bits (82), Expect = 0.023
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 417 DECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
+ECL + G C C + + Y C C +G+ L +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 38
Score = 31.0 bits (69), Expect = 0.82
Identities = 17/110 (15%), Positives = 26/110 (23%), Gaps = 7/110 (6%)
Query: 376 CNNKADCE-NLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADEC-LIDGSCDQTCTN 431
C + +C+ CS C G C C G +P+ C + +
Sbjct: 37 CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRK 96
Query: 432 THLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASIIFSSTVDIRRIHLNG 481
L + LR S I L+
Sbjct: 97 MTLDRSEYTSLIPNLRNVVALD---TEVASNRIYWSDLSQRMICSTQLDR 143
Score = 30.6 bits (68), Expect = 1.0
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 423 GSCDQTC------TNTHLSYVCSCTEGYTLRPDGKSCTA 455
G C C + C+C +G L D +SC
Sbjct: 360 GGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 398
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 68.4 bits (167), Expect = 2e-12
Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 161 NAVLCHPNELRCG----SSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGK 216
+ + C S +C + G D ++ + F C GK
Sbjct: 157 SINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKAD-SPMDDFFQCVNGK 215
Query: 217 CIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCST-DD 275
I + CDG DC D SDE C C C S CIP + C+ E+DC T +D
Sbjct: 216 YISQMKACDGINDC-GDQSDELC-C-KACQGKGFHCK-SGVCIPSQYQCNGEVDCITGED 271
Query: 276 IVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDC 316
V + ++ I ++ C
Sbjct: 272 EVGCAGFASVAQEETEILTADMDAERRRIKS---LLPKLSC 309
Score = 45.7 bits (108), Expect = 2e-05
Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 27/155 (17%)
Query: 303 CIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVALSKFCDG 362
C D + D+V T + + +C + + ++ K CDG
Sbjct: 178 CTFTKRRTMGYQDFA--DVVCYTQKA---------DSPMDDFFQCVNG-KYISQMKACDG 225
Query: 363 KPDCSNGEDE---GPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADEC 419
DC + DE C++ C N DE
Sbjct: 226 INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQ------------CNGEVDCITGEDEV 273
Query: 420 LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
G T + E ++ +
Sbjct: 274 GCAGFASVAQEETEILTADMDAERRRIKSLLPKLS 308
Score = 29.9 bits (67), Expect = 2.3
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 5 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
+ QC + K I CD DC D +DE
Sbjct: 204 PMDDFFQCV-NGKYISQMKACDGINDCG-----DQSDE 235
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 67.1 bits (163), Expect = 3e-12
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGY 444
C+ KC C C G + C D +EC +G C Q CTN+ ++ C C GY
Sbjct: 13 CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGY 72
Query: 445 TLRPDGKSCTAVNVPQ 460
LRPD +SC A+
Sbjct: 73 ELRPDRRSCKALGPEP 88
Score = 60.2 bits (145), Expect = 5e-10
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
R+E + M G R + ++ WP+ L IDY +YW D+ + +E +DGSH +
Sbjct: 226 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 285
Query: 167 PN 168
Sbjct: 286 QG 287
Score = 46.3 bits (109), Expect = 1e-05
Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 20/182 (10%)
Query: 3 HQCFN--GQVQCALSK--KCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFK--------- 49
+C G VQC + C + +C+ + + + F+
Sbjct: 15 QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYEL 74
Query: 50 ----RILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLD 105
R + + + L N + + +F D
Sbjct: 75 RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD 134
Query: 106 E---RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNA 162
R+ +A ++G N +V+ ++ P L +D+ D LYW DS + +E +DG+H
Sbjct: 135 VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194
Query: 163 VL 164
VL
Sbjct: 195 VL 196
Score = 39.4 bits (91), Expect = 0.002
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVL 164
R+E A + G +R L+ ++++ P ++ + + +YW D +E+ +DGS ++
Sbjct: 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 240
Score = 33.2 bits (75), Expect = 0.19
Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 2/144 (1%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC-ENLKCSHKCSPTPRGA 398
C+ N C Q + + C ED G C + +C E CS C+ +
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTED-GRTCQDVNECAEEGYCSQGCTNSEGAF 64
Query: 399 MCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV 458
C+C AG + + L +
Sbjct: 65 QCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFH 124
Query: 459 PQDEPASIIFSSTVDIRRIHLNGS 482
+ E + I R +LNGS
Sbjct: 125 HRRELVFWSDVTLDRILRANLNGS 148
Score = 32.8 bits (74), Expect = 0.25
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 423 GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
G C C + +Y C+C G+ + +C
Sbjct: 355 GGCTHLCLPSGQNYTCACPTGFRK-INSHACA 385
Score = 30.5 bits (68), Expect = 1.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 382 CENLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCV 414
N C+H C P+ + C CP G + N C
Sbjct: 352 DNNGGCTHLCLPSGQNYTCACPTGFRKINSHACA 385
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 61.2 bits (149), Expect = 8e-12
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 376 CNNKADCENLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDGSCDQTCTNTHL 434
+ C C C P A C CP G + C D DEC G C C N
Sbjct: 40 HRCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPG 98
Query: 435 SYVCSCTEGYTLRP-DGKSC 453
++ C C L G C
Sbjct: 99 TFECICGPDSALAGQIGTDC 118
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 58.8 bits (143), Expect = 2e-11
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 387 CSHKCSPTPRGAMCFCPAG---QNPNKTQCVDADECLID--GSCDQTCTNTHLSYVCSCT 441
+C TP C C G C+D DEC D C NT SY C C
Sbjct: 14 GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECP 73
Query: 442 EGYTLRPDGKSC 453
G+ L P+ +C
Sbjct: 74 PGHQLSPNISAC 85
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 63.2 bits (153), Expect = 4e-11
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 18/170 (10%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLC- 165
++E+AGM G +R ++ I WP+ L +DY + LYW D+ LN + +DG++ +
Sbjct: 146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205
Query: 166 ----HPNELRCGS---------SNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSC 212
HP L ++ +A +K+ + + P + +
Sbjct: 206 GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN 265
Query: 213 GMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHN 262
C ++ C CL C C G K C N
Sbjct: 266 ATNPCGIDNGGCSHL--CLMSPVKPFYQCA--CPTGVKLLENGKTCKDGN 311
Score = 45.1 bits (106), Expect = 3e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 105 DERLEKAGMHGENRSP-LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAV 163
+E +++ + +V + P L D+ + LYW DS N +E +DGS V
Sbjct: 56 EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115
Query: 164 L 164
L
Sbjct: 116 L 116
Score = 43.9 bits (103), Expect = 6e-05
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLS-- 435
NK E L+ H +P F Q + +G C C + +
Sbjct: 235 NKYTGEGLREIHSDIFSPMDIHAFSQQRQ-----PNATNPCGIDNGGCSHLCLMSPVKPF 289
Query: 436 YVCSCTEGYTLRPDGKSCTAVN 457
Y C+C G L +GK+C N
Sbjct: 290 YQCACPTGVKLLENGKTCKDGN 311
Score = 40.4 bits (94), Expect = 9e-04
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 374 PFCNNKADCENLKCSHKCSPTPR--GAMCFCPAGQ--NPNKTQCVDADEC 419
P N +N CSH C +P C CP G N C D +
Sbjct: 264 PNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
Score = 38.5 bits (89), Expect = 0.003
Identities = 5/48 (10%), Positives = 23/48 (47%)
Query: 114 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHN 161
+G+ + +V ++ +++ ++ ++YW D ++ + + +
Sbjct: 22 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 69
Score = 37.7 bits (87), Expect = 0.006
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVL 164
R+E + + G R L + + P ++ +D + +YW D +E +DGS ++
Sbjct: 102 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 57.7 bits (140), Expect = 2e-10
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 7/116 (6%)
Query: 341 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMC 400
P + C + + DG+ + + C +L + T
Sbjct: 35 DPTKTICIETIKGTCWQTVIDGRCEI----NINGATLKSQCCSSLGAAWGSPCTLCQVDP 90
Query: 401 FCPAG-QNPNKTQCVDADECLIDGSC--DQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
C G TQC D DEC + + C NT S+ C C G TL G+ C
Sbjct: 91 ICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 46.2 bits (110), Expect = 3e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
D DEC + C N+ S++C C+ TL P C
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI 45
Score = 34.2 bits (79), Expect = 0.030
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 27/97 (27%)
Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADEC------------------------L 420
+ C +P +C C + +P KT C++ +
Sbjct: 13 INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCC 72
Query: 421 IDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
T C +GY+ G C ++
Sbjct: 73 SSLGAAWGSPCTLCQVDPICGKGYSR-IKGTQCEDID 108
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 54.1 bits (131), Expect = 9e-10
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 387 CSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVCSCTEGYT 445
+C T C CP G +CVD DEC + + TC N + C+C EG+
Sbjct: 15 KHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFE 74
Query: 446 LRPDG 450
P
Sbjct: 75 PGPMM 79
Score = 43.0 bits (102), Expect = 8e-06
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 413 CVDADECLIDGSC-DQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
VD DEC C C NT SY C C GY L G C +
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTD 45
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 56.2 bits (136), Expect = 1e-09
Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLID--GSCDQTCTNTH 433
KA + + + +C G NP D DEC C NT
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTF 141
Query: 434 LSYVCSCTEGYTLRPDGKSC 453
S+ C C GY L D + C
Sbjct: 142 GSFQCRCPTGYYLNEDTRVC 161
Score = 54.3 bits (131), Expect = 5e-09
Identities = 8/76 (10%), Positives = 15/76 (19%), Gaps = 2/76 (2%)
Query: 384 NLKCSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCT 441
N + C G + C + +C
Sbjct: 48 NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGG 107
Query: 442 EGYTLRPDGKSCTAVN 457
EG+ P ++
Sbjct: 108 EGFRPNPITVILEDID 123
Score = 53.9 bits (130), Expect = 7e-09
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGY 444
S C TP +C CP NP + CVD + D + CS G
Sbjct: 13 ISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--NCYLDIRPRGDNGDTACSNEIGV 70
Query: 445 TLRPDGKSC 453
+ C
Sbjct: 71 GVSKASCCC 79
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 52.7 bits (127), Expect = 1e-09
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 201 CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIHQ 244
+C PG+F+C +CI E WKCDG DC D SDE C
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDC-LDNSDEAPALCHQH 45
Score = 33.8 bits (78), Expect = 0.006
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 241 CIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
QC G+ CA + +CI W CD + DC DN+DE
Sbjct: 2 SPPQCQPGEFACA-NSRCIQERWKCDGDNDCL-----DNSDEA 38
Score = 33.0 bits (76), Expect = 0.013
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 199
C P E C ++++C+ CDG DC + DE P
Sbjct: 6 CQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAP 39
Score = 33.0 bits (76), Expect = 0.013
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGP 374
C P E C ++++C+ CDG DC + DE P
Sbjct: 6 CQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAP 39
Score = 32.7 bits (75), Expect = 0.014
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
QC G+ CA + +CI W CD + DC DN+DE
Sbjct: 4 PQCQPGEFACA-NSRCIQERWKCDGDNDCL-----DNSDEA 38
Score = 32.7 bits (75), Expect = 0.014
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
QC G+ CA + +CI W CD + DC DN+DE
Sbjct: 4 PQCQPGEFACA-NSRCIQERWKCDGDNDCL-----DNSDEA 38
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 57.8 bits (139), Expect = 2e-09
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
+++K G++G + LVT+NIQWP+ + +D LYW DS L+++ S+ V+G + +
Sbjct: 144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 203
Query: 167 PNE 169
+
Sbjct: 204 DEK 206
Score = 42.3 bits (99), Expect = 2e-04
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 117 NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+ +++++IQ P L +D+ +YW DS L TV G L
Sbjct: 67 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114
Score = 42.0 bits (98), Expect = 3e-04
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVLC 165
+ A G R L +N P ++V+D +YW D ++ ++G L
Sbjct: 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159
Query: 166 HPN 168
N
Sbjct: 160 TEN 162
Score = 41.2 bits (96), Expect = 5e-04
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 378 NKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHL--- 434
N+ ++ + +P + F Q C L +G C C
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWC--ERTTLSNGGCQYLCLPAPQINP 292
Query: 435 ---SYVCSCTEGYTLRPDGKSC 453
+ C+C +G L D +SC
Sbjct: 293 HSPKFTCACPDGMLLARDMRSC 314
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 52.1 bits (125), Expect = 3e-09
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 414 VDADECLID---------GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
VD DEC C C N Y CSC GY L+ D SC A
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 57.9 bits (139), Expect = 4e-09
Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+A + G R L + P +L +D L+W DS L +ES + G++ VL
Sbjct: 457 KIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLED 516
Query: 167 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFS--CGMGKCIPESWKC 224
N L+ + D + D + + + + +
Sbjct: 517 SNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQE 576
Query: 225 DGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDC 271
C +D + C+ + +G +C+ C H L +E+ C
Sbjct: 577 YRQHPCAQDNGGCSHICLVK-GDGTTRCS----CPMHLVLLQDELSC 618
Score = 56.4 bits (135), Expect = 1e-08
Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 19/221 (8%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++++A M G R+ LV N+ + L IDY + LYW D N +ES + G + V+
Sbjct: 147 KIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205
Query: 167 PNELRCGSSNQCVALSKF------CDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPE 220
L+++ D ++ N G M +
Sbjct: 206 -------DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFH 258
Query: 221 SWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 280
S + G+ +C + C H C C H L + CS
Sbjct: 259 SSRQSGWNEC----ASSNGHCSHLCLAVP-VGGFVCGCPAHYSLNADNRTCSAPTTFLLF 313
Query: 281 DEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDI 321
+ + Q + + + D +
Sbjct: 314 SQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL 354
Score = 52.1 bits (124), Expect = 3e-07
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+ + +A M+G +V + +P + +D+ LYW D+ N +E ++DG H VL
Sbjct: 58 LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117
Score = 42.9 bits (100), Expect = 2e-04
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 107 RLEKAGMHGENRSPLVTKNIQ------WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSH 160
+ KA G +V ++ P L ID +YW N + R+DG
Sbjct: 363 MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS 422
Query: 161 NAVL 164
V+
Sbjct: 423 VGVV 426
Score = 41.7 bits (97), Expect = 4e-04
Identities = 17/182 (9%), Positives = 55/182 (30%), Gaps = 23/182 (12%)
Query: 5 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNH 64
C + S + + ++ I + + A++++
Sbjct: 291 CPAHY-SLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDP 349
Query: 65 RNQSLCF--IQQQNVSSVRL-----RCAQINDLLNSWDLPAPEIFPLDE----------- 106
++ L + +Q + + ++ + + P +D
Sbjct: 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA 409
Query: 107 --RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN--TVESVRVDGSHNA 162
+ + G + ++ P ++V++ + +Y+ + +E +DG+
Sbjct: 410 TNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE 469
Query: 163 VL 164
VL
Sbjct: 470 VL 471
Score = 38.2 bits (88), Expect = 0.005
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 101 IFPLDERLEKAGMHGENRSPLV-TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS 159
+F + + + N + + ++ S+L D + +YW D L T+ ++GS
Sbjct: 10 LFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS 69
Query: 160 HNAVL 164
+
Sbjct: 70 ALEHV 74
Score = 37.5 bits (86), Expect = 0.011
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 407 NPNKTQCVDADECLIDGSCDQTCTNTHL-SYVCSCTEGYTLRPDGKSCTAV 456
N + +G C C + CSC L D SC
Sbjct: 571 ELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGT 621
Score = 37.1 bits (85), Expect = 0.011
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVL 164
R+E + + G++R LV K++ P +L +D + +YW + ++ +DGS L
Sbjct: 103 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161
Score = 36.7 bits (84), Expect = 0.018
Identities = 14/70 (20%), Positives = 23/70 (32%)
Query: 113 MHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRC 172
L +++ ++ D LYW DS N + + DGS + +
Sbjct: 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQ 385
Query: 173 GSSNQCVALS 182
Q LS
Sbjct: 386 NLEIQPYDLS 395
Score = 30.5 bits (68), Expect = 1.4
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 6/138 (4%)
Query: 349 SSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRG-AMCFCPAGQN 407
S + D D N+ N CSH C P G +C CPA +
Sbjct: 237 SGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYS 296
Query: 408 PNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEPASII 467
N + ++ N + + ++ A++ D +
Sbjct: 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDY--DPLDKQL 354
Query: 468 FSSTVD---IRRIHLNGS 482
+ IR+ +GS
Sbjct: 355 YWIDSRQNMIRKAQEDGS 372
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 50.3 bits (121), Expect = 7e-09
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 205 CTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
C+ +F C G+CI SW+CDG DC +D SDE N
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDC-KDKSDEEN 35
Score = 34.5 bits (80), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C E C S +C+ S CDG PDC + DE
Sbjct: 2 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDE 33
Score = 34.5 bits (80), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C E C S +C+ S CDG PDC + DE
Sbjct: 2 CSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDE 33
Score = 30.6 bits (70), Expect = 0.061
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 5 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
C + C S +CI +W CD DC D +DE
Sbjct: 2 CSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDE 33
Score = 30.6 bits (70), Expect = 0.061
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 245 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
C + C S +CI +W CD DC D +DE
Sbjct: 2 CSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDE 33
Score = 30.6 bits (70), Expect = 0.061
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 290 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 327
C + C S +CI +W CD DC D +DE
Sbjct: 2 CSAFEFHCL-SGECIHSSWRCDGGPDCK-----DKSDE 33
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 56.4 bits (135), Expect = 1e-08
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+A + G +R LV ++ WP+ L +DY++ +YW D+ + +E + DG+ VL
Sbjct: 459 KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE 518
Score = 54.1 bits (129), Expect = 6e-08
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
++E+AGM G +R ++ I WP+ L +DY + LYW D+ LN + +DG++ +
Sbjct: 151 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210
Query: 167 PN 168
+
Sbjct: 211 GS 212
Score = 53.7 bits (128), Expect = 8e-08
Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 11/158 (6%)
Query: 12 CALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFKRILNGTHTLALEFNHRNQSLCF 71
C +S + C + + T +D + T + + + +
Sbjct: 286 CLMSPVKPFYQCACPTGVKLLENG---KTCKDGATELLLLARRTDLRRISLDTPDFTDIV 342
Query: 72 IQQQNVSSVR-LRCAQINDLLNSWDLPAPEIFPLDERLEKAGMHGENRSPLVTKNIQWPS 130
+Q +++ + + + D I ++ + G +VT I P
Sbjct: 343 LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR-------RSFIDGSGSQFVVTAQIAHPD 395
Query: 131 SLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPN 168
+ +D+ LYW D+ + +E R++G+ +L +
Sbjct: 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED 433
Score = 45.6 bits (107), Expect = 3e-05
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 105 DERLEKAGMHGENRSP-LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAV 163
+E +++ + +V + P L D+ + LYW DS N +E +DGS V
Sbjct: 61 EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 120
Query: 164 LCHPN 168
L
Sbjct: 121 LFWQE 125
Score = 42.9 bits (100), Expect = 2e-04
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 410 KTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
+G C C C+C G+ L D K+C
Sbjct: 573 HRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
Score = 40.6 bits (94), Expect = 0.001
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSHNAVLC 165
R+E + + G R L + + P ++ +D + +YW D +E +DGS ++
Sbjct: 107 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166
Query: 166 HPN 168
+
Sbjct: 167 NSE 169
Score = 38.3 bits (88), Expect = 0.005
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS-HLNTVESVRVDGSHNAVLC 165
R+E ++G R L++++++ P ++V+D +YW D + +E +DGS VL
Sbjct: 415 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV 474
Query: 166 HPN 168
+ +
Sbjct: 475 NTS 477
Score = 37.9 bits (87), Expect = 0.007
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 374 PFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCV 414
+N EN CSH C P+G C CP G + C+
Sbjct: 575 VIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 35.6 bits (81), Expect = 0.039
Identities = 5/48 (10%), Positives = 23/48 (47%)
Query: 114 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHN 161
+G+ + +V ++ +++ ++ ++YW D ++ + + +
Sbjct: 27 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 74
Score = 31.3 bits (70), Expect = 0.77
Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 4/113 (3%)
Query: 374 PFCNNKADCENLKCSHKCSPTPRGA--MCFCPAGQNPNKTQCVDADECLIDGSCDQTCTN 431
P N +N CSH C +P C CP G + D +
Sbjct: 269 PNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328
Query: 432 THLSYVCSCTEGYTLR-PDGKSCTAVNV-PQDEPASIIFSSTVDIRRIHLNGS 482
+S L+ D + A++ P + IRR ++GS
Sbjct: 329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS 381
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 49.6 bits (119), Expect = 2e-08
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 201 CNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN 239
EC QF C +CIP W+CD DC D SDE +
Sbjct: 4 PAKECEKDQFQCRNERCIPSVWRCDEDDDC-LDHSDEDD 41
Score = 34.2 bits (79), Expect = 0.005
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 239 NTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
+ +C Q QC +++CIP W CDE+ DC D++DED
Sbjct: 2 SGPAKECEKDQFQCR-NERCIPSVWRCDEDDDCL-----DHSDED 40
Score = 33.0 bits (76), Expect = 0.011
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
+C Q QC +++CIP W CDE+ DC D++DED
Sbjct: 6 KECEKDQFQCR-NERCIPSVWRCDEDDDCL-----DHSDED 40
Score = 33.0 bits (76), Expect = 0.011
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
+C Q QC +++CIP W CDE+ DC D++DED
Sbjct: 6 KECEKDQFQCR-NERCIPSVWRCDEDDDCL-----DHSDED 40
Score = 32.2 bits (74), Expect = 0.018
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C ++ +C + +C+ CD DC + DE
Sbjct: 8 CEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDE 39
Score = 32.2 bits (74), Expect = 0.018
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C ++ +C + +C+ CD DC + DE
Sbjct: 8 CEKDQFQCRN-ERCIPSVWRCDEDDDCLDHSDE 39
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 50.2 bits (120), Expect = 2e-08
Identities = 15/62 (24%), Positives = 21/62 (33%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C P+ C ++ CV CDG DC++G DE G G +
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRL 68
Query: 225 DG 226
Sbjct: 69 AS 70
Score = 47.9 bits (114), Expect = 2e-07
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 205 CTPGQFSC-GMGKCIPESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCAL-SKKCIPHN 262
C P FSC G C+PE W CDG DC DG+DE C S
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDC-ADGADESIAA--GCLYNSTGSGSGSGSTEELR 65
Query: 263 WLCDEEMDC 271
+
Sbjct: 66 VRLASHLRK 74
Score = 39.5 bits (92), Expect = 1e-04
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPR 396
C P+ C ++ CV CDG DC++G DE + + R
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELR 65
Score = 37.1 bits (86), Expect = 8e-04
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRC 347
C C + C+P WLCD + DC+ D DE A C N
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADE-------SIAAGCLYNSTGS 54
Query: 348 GSSNQCVALSKF-CDG 362
GS + +
Sbjct: 55 GSGSGSTEELRVRLAS 70
Score = 35.6 bits (82), Expect = 0.003
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 243 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCAL-SK 301
C C + C+P WLCD + DC+ D DE C S
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADE--SIAAGCLYNSTGSGSGSG 59
Query: 302 KCIPHNWLCDEEMDC 316
+
Sbjct: 60 STEELRVRLASHLRK 74
Score = 31.4 bits (71), Expect = 0.10
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
C C + C+P WLCD + DC+ D DE
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADE 41
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 52.9 bits (126), Expect = 4e-08
Identities = 24/128 (18%), Positives = 37/128 (28%), Gaps = 7/128 (5%)
Query: 167 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAE---CTPGQFSCGM--GKCIPES 221
N++ S+ L D K G E C + CG +CI +
Sbjct: 14 TNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKL 73
Query: 222 WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALS-KKCIPHNWLCDEEMDCSTDDIVDNT 280
+ CDG DC +G DE + + + + C S+ T
Sbjct: 74 FVCDGHNDC-RNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFT 132
Query: 281 DEDWDKFH 288
H
Sbjct: 133 PIADLHVH 140
Score = 44.8 bits (105), Expect = 2e-05
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSC--GMGKCIPES 221
C +E +CG + QC++ CDG DC NGEDE +F C
Sbjct: 55 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRR 114
Query: 222 WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTD 281
+ + + +++ + + D E + + +
Sbjct: 115 PEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPP 174
Query: 282 ED 283
E+
Sbjct: 175 EE 176
Score = 40.2 bits (93), Expect = 6e-04
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 274 DDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYF 333
D+I+D E +K V+ L + P + +++ D +
Sbjct: 4 DEIIDKLIERTNKI-TTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPS-------- 54
Query: 334 SHNAVLCHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDE 372
C +E +CG + QC++ CDG DC NGEDE
Sbjct: 55 ------CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
Score = 27.5 bits (60), Expect = 8.2
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 3 HQCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
C + QC +CI ++CD DC + DE
Sbjct: 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCR-----NGEDE 88
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 47.7 bits (114), Expect = 6e-08
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 202 NAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPN-TCIHQ 244
+ C+ QF C G+CIPE W CDG DC D SDE + C +Q
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDC-GDYSDETHANCTNQ 44
Score = 32.7 bits (75), Expect = 0.014
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
H C + Q +C S +CIP +W CD + DC D +DE
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG-----DYSDET 37
Score = 32.7 bits (75), Expect = 0.014
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 243 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
H C + Q +C S +CIP +W CD + DC D +DE
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG-----DYSDET 37
Score = 32.7 bits (75), Expect = 0.014
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
H C + Q +C S +CIP +W CD + DC D +DE
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG-----DYSDET 37
Score = 31.5 bits (72), Expect = 0.038
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C + +C S +C+ CDG DC + DE
Sbjct: 5 CSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDE 36
Score = 31.5 bits (72), Expect = 0.038
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C + +C S +C+ CDG DC + DE
Sbjct: 5 CSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDE 36
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 48.1 bits (115), Expect = 7e-08
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 417 DECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
C +D G CDQ C S VCSC GYTL +GK+C
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 43
Score = 32.0 bits (73), Expect = 0.037
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 387 CSHKCSPTPRGAMCFCPAG--QNPNKTQCVDADEC 419
C C +C C G N C+
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 49.7 bits (119), Expect = 8e-08
Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 376 CNNKADCENLKCSH--KCSPTPRGAMCFCPAG-QNPNKTQCVDADECLID-GSCDQTCTN 431
C C C C +G + + V C +D G C C
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLE 70
Query: 432 THLSYVCSCTEGYTLRPDGKSC 453
CSC GY L D C
Sbjct: 71 EVGWRRCSCAPGYKLGDDLLQC 92
Score = 29.7 bits (67), Expect = 0.67
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 411 TQCVDADECLIDGSCDQ---------TCTNTHLSYVCSCTEGYTLR 447
++ VD D+CL+ TC + S+ C C G+ R
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 46
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 46.9 bits (112), Expect = 1e-07
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 201 CNAECTPGQFSCGMGK-CIPESWKCDGFVDCLEDGSDEPN 239
CT QF C G CI ++CDG DC D SDE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDC-RDNSDEAG 41
Score = 40.4 bits (95), Expect = 3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C + +C + C+ CDG DC + DE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 40.4 bits (95), Expect = 3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C + +C + C+ CDG DC + DE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 35.0 bits (81), Expect = 0.002
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 241 CIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
+ C + Q +CA CI + CD DC DN+DE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCR-----DNSDE 39
Score = 33.8 bits (78), Expect = 0.006
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
C + Q +CA CI + CD DC DN+DE
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCR-----DNSDE 39
Score = 33.8 bits (78), Expect = 0.006
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDE 327
C + Q +CA CI + CD DC DN+DE
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCR-----DNSDE 39
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 45.8 bits (109), Expect = 3e-07
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 205 CTPGQFSCGMG--KCIPESWKCDGFVDCLEDGSDEPN 239
C + SCG +CIP SW+CDG DC + G DE N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDC-DSGEDEEN 36
Score = 36.6 bits (85), Expect = 6e-04
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 165 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 197
C +E+ CG+ S QC+ +S CDG+ DC +GEDE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 36.6 bits (85), Expect = 6e-04
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 340 CHPNELRCGS-SNQCVALSKFCDGKPDCSNGEDE 372
C +E+ CG+ S QC+ +S CDG+ DC +GEDE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 29.2 bits (66), Expect = 0.26
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 5 CFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDE 42
C ++ C S +CIP +W CD E DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD-----SGEDE 34
Score = 29.2 bits (66), Expect = 0.26
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 245 CFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDE 282
C ++ C S +CIP +W CD E DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD-----SGEDE 34
Score = 29.2 bits (66), Expect = 0.26
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 290 CFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDE 327
C ++ C S +CIP +W CD E DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD-----SGEDE 34
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 45.7 bits (109), Expect = 3e-07
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 205 CTPGQFSCGM-GKCIPESWKCDGFVDCLEDGSDEPN 239
C +F C + G CIP W+CDG DC D SDE +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDC-MDSSDEKS 38
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENL 385
CH +E +C C+ L CDG DC + DE CE +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE-------KSCEGV 42
Score = 40.7 bits (96), Expect = 2e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
CH +E +C C+ L CDG DC + DE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 35.7 bits (83), Expect = 0.001
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
C + QC L CIP W CD + DC D++DE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM-----DSSDEK 37
Score = 35.7 bits (83), Expect = 0.001
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 243 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
C + QC L CIP W CD + DC D++DE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM-----DSSDEK 37
Score = 35.7 bits (83), Expect = 0.001
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
C + QC L CIP W CD + DC D++DE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCM-----DSSDEK 37
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 45.9 bits (109), Expect = 4e-07
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 202 NAECTPGQFSCG-----MGKCIPESWKCDGFVDCLEDGSDEPN 239
++ C PGQF C G+C P+ W CDG DC +DG DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDEWG 43
Score = 35.1 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 165 CHPNELRCGS----SNQCVALSKFCDGKPDCSNGEDE 197
C P + RC +C CDG PDC +G DE
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 35.1 bits (81), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 340 CHPNELRCGS----SNQCVALSKFCDGKPDCSNGEDE 372
C P + RC +C CDG PDC +G DE
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 28.2 bits (63), Expect = 0.56
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 4 QCFNGQVQCALSK----KCIPHNWLCDEEMDCSTDDIVDNTDE 42
+C GQ +C+ +C P +WLCD DC D DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDE 41
Score = 28.2 bits (63), Expect = 0.56
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 244 QCFNGQVQCALSK----KCIPHNWLCDEEMDCSTDDIVDNTDE 282
+C GQ +C+ +C P +WLCD DC D DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDE 41
Score = 28.2 bits (63), Expect = 0.56
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 289 QCFNGQVQCALSK----KCIPHNWLCDEEMDCSTDDIVDNTDE 327
+C GQ +C+ +C P +WLCD DC D DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDE 41
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 51.0 bits (121), Expect = 4e-07
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 107 RLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCH 166
R+E + M G R + ++ WP+ L IDY +YW D+ + +E +DGSH +
Sbjct: 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 242
Query: 167 PN 168
Sbjct: 243 QG 244
Score = 49.9 bits (118), Expect = 9e-07
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 417 DECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
+EC +G C Q CTN+ ++ C C GY LRPD +SC A+
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG 42
Score = 44.5 bits (104), Expect = 5e-05
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 110 KAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+A ++G N +V+ ++ P L +D+ D LYW DS + +E +DG+H VL
Sbjct: 99 RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153
Score = 34.5 bits (78), Expect = 0.076
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 407 NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTA 455
+P + +G C C + +Y C+C G+ + +C
Sbjct: 296 HPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAL 343
Score = 34.1 bits (77), Expect = 0.090
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 374 PFCNNKADCENLKCSHKCSPTPRGAMCFCPAG-QNPNKTQCVDADECLIDG 423
P N+ N C+H C P+ + C CP G + N C E L G
Sbjct: 301 PAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACA--LEVLFQG 349
Score = 31.0 bits (69), Expect = 0.90
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 383 ENLKCSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSC 440
E CS C+ + C+C AG P++ C + ++ +
Sbjct: 6 EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANR---IDIRQVLPHR 62
Query: 441 TEGYTLRPDGKSCTAVNV-PQDEPASIIFSSTVDIRRIHLNGS 482
+E L + ++ A++ + E + I R +LNGS
Sbjct: 63 SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 45.8 bits (109), Expect = 4e-07
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 419 CLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAV 456
C +D G CDQ C CSC GY L D KSC +
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39
Score = 31.2 bits (71), Expect = 0.056
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 387 CSHKCSPTPRGAMCFCPAGQ--NPNKTQCVDADEC 419
C C C C G + CV +
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 45.4 bits (108), Expect = 5e-07
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 205 CTPGQFSC-GMGKCIPESWKCDGFVDCLEDGSDEPNTC 241
C P FSC G C+PE W CDG DC DG+DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDC-ADGADESIAA 43
Score = 41.2 bits (97), Expect = 2e-05
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADC 382
C P+ C ++ CV CDG DC++G DE +
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNS 49
Score = 39.7 bits (93), Expect = 5e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCN 202
C P+ C ++ CV CDG DC++G DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 33.9 bits (78), Expect = 0.006
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 3 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
C C + C+P WLCD + DC+ D DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADES 40
Score = 33.9 bits (78), Expect = 0.006
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 243 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
C C + C+P WLCD + DC+ D DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADES 40
Score = 33.9 bits (78), Expect = 0.006
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 288 HQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
C C + C+P WLCD + DC+ D DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCA-----DGADES 40
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 45.6 bits (108), Expect = 5e-07
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 202 NAECTPGQFSC-----GMGKCIPESWKCDGFVDCLEDGSDEPN 239
C PGQF C G+C P+ W CDG DC +DG DE
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC-DDGRDEWG 45
Score = 34.4 bits (79), Expect = 0.004
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 165 CHPNELRC----GSSNQCVALSKFCDGKPDCSNGEDE 197
C P + RC G+ +C CDG PDC +G DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 34.4 bits (79), Expect = 0.004
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 340 CHPNELRC----GSSNQCVALSKFCDGKPDCSNGEDE 372
C P + RC G+ +C CDG PDC +G DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 29.0 bits (65), Expect = 0.34
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 286 KFHQCFNGQVQCALSK----KCIPHNWLCDEEMDCSTDDIVDNTDE 327
+F C GQ +C+ +C P +WLCD DC D DE
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDE 43
Score = 29.0 bits (65), Expect = 0.35
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 3 HQCFNGQVQCALSK----KCIPHNWLCDEEMDCSTDDIVDNTDE 42
C GQ +C+ +C P +WLCD DC D DE
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDE 43
Score = 29.0 bits (65), Expect = 0.35
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 243 HQCFNGQVQCALSK----KCIPHNWLCDEEMDCSTDDIVDNTDE 282
C GQ +C+ +C P +WLCD DC D DE
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD-----DGRDE 43
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 47.9 bits (114), Expect = 6e-07
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 376 CNNKADCENLKCSHKCS-PTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCD--QTCTN 431
C +DC N + S+ C + +N ++ C D DEC CD C N
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 432 THLSYVCSCTEGYTLRPDGKSCTAVNV 458
T SY C C G+ R + V
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPNNQKDTV 141
Score = 28.6 bits (64), Expect = 2.3
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYT-----LRPDGKSCTAVN 457
D+ C D +C N + C C G++ + ++C +N
Sbjct: 1 DSRGCARWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDIN 45
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 44.4 bits (105), Expect = 2e-06
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 413 CVDADECLID-GSCDQTCTNTHLS-YVCSCTEGYTLRPDGKSCTAV 456
D C+ + G C+Q C++ + C C EGY+L DG SCT
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 47
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 43.2 bits (102), Expect = 3e-06
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 202 NAECTPGQFSCGMG-KCIPESWKCDGFVDCLEDGSDEPN 239
+ +C+ G F CG KC+P+ C+G DC + +DE N
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDC-GNQADEDN 41
Score = 40.8 bits (96), Expect = 2e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 197
C CG+ +C+ C+G DC N DE
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 40.8 bits (96), Expect = 2e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE 372
C CG+ +C+ C+G DC N DE
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 32.0 bits (73), Expect = 0.022
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 4 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
+C G C KC+P C+ DC + DED
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCG-----NQADED 40
Score = 32.0 bits (73), Expect = 0.022
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 244 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 283
+C G C KC+P C+ DC + DED
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCG-----NQADED 40
Score = 32.0 bits (73), Expect = 0.022
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 289 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDED 328
+C G C KC+P C+ DC + DED
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCG-----NQADED 40
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 42.1 bits (99), Expect = 9e-06
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 419 CLID-GSCDQTCTNT-HLSYVCSCTEGYTLRPDGKSCTAV 456
C I G C+Q C N+ VCSCTEGY L + KSC
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 41
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 45.3 bits (106), Expect = 1e-05
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 12/151 (7%)
Query: 189 PDCSNGEDEGPFCNAE---CTPGQFSCGM--GKCIPESWKCDGFVDCLEDGSDEPNTCIH 243
P+ E + E C F CG +CI + CDG DC + DE
Sbjct: 34 PEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDC-HNAHDEDPDV-- 90
Query: 244 QCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWD-KFHQCFNGQVQCALSK- 301
C V+ C D T + + V+ L +
Sbjct: 91 -CDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERH 149
Query: 302 -KCIPHNWLCDEEMDCSTDDIVDNTDEDWDK 331
+ + ++ + ++ ++ +D D
Sbjct: 150 GENVTSSFNAKGYYNFASRRLILLPTDDHDD 180
Score = 44.5 bits (104), Expect = 3e-05
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 12/135 (8%)
Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESW- 222
C +CG + +C++ CDG DC N DE P C G +W
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP---DVCDTSVVKAGNVFSGTSTWH 109
Query: 223 ----KCDGFVDCLEDGSDEPNTCI-HQCFNGQVQCALSK--KCIPHNWLCDEEMDCSTDD 275
+ D S V+ L + + + ++ + ++
Sbjct: 110 GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRR 169
Query: 276 IVDNTDEDWDKFHQC 290
++ +D D
Sbjct: 170 LILLPTDDHDDHLAV 184
Score = 34.1 bits (77), Expect = 0.069
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 340 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGPFC--NNKADCENLKC----SHKCS 392
C +CG + +C++ CDG DC N DE P + N+ H C
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCL 112
Query: 393 PTPRGAMCFC-PAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCS 439
A + L++ ++ N S+
Sbjct: 113 AREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAK 160
Score = 28.7 bits (63), Expect = 3.3
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 3 HQCFNGQVQCAL-SKKCIPHNWLCDEEMDCSTDDIVDNTDED 43
C QC ++CI +CD DC + DED
Sbjct: 51 THCEKRTFQCGGNEQECISDLLVCDGHKDCH-----NAHDED 87
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 45.9 bits (109), Expect = 2e-05
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 382 CENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVC 438
C + C H C + G C C G + + + C C SY C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 439 SCTEGYTLRPDGKSCTAVNVPQDEP 463
SC +GY L D K C +
Sbjct: 68 SCAQGYRLGEDHKQCVPHDQCACGV 92
Score = 28.9 bits (65), Expect = 3.2
Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 350 SNQCVALSKFCDGKPDCSNGED----------EGPFC-NNKADC---ENLKCSHKCSPTP 395
+ C +S+ C C + EG C K +C C H C P
Sbjct: 5 GSPC--ISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ 62
Query: 396 RGAMCFCPAGQNPNKTQCVDADEC 419
C C G +
Sbjct: 63 ESYTCSCAQGYRLGEDHKQCVPHD 86
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 45.5 bits (108), Expect = 2e-05
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 410 KTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEP 463
K +C C C SY CSC +GY L D K C +
Sbjct: 2 KNECHPER----TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 51
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 40.4 bits (95), Expect = 3e-05
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 419 CLID-GSCDQTCTNTHLS-YVCSCTEGYTLRPDGKSCTAV 456
C+ + G C+Q C++ + C C EGY+L DG SCT
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 42.9 bits (101), Expect = 4e-05
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 411 TQCVDADEC--LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
D +EC +D C C N Y CSC Y L D K+C
Sbjct: 112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
Score = 27.1 bits (60), Expect = 8.7
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 376 CNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADEC 419
N D ++ CSH C+ G C CP D C
Sbjct: 117 INECTDFVDVPCSHFCNNFIGGYFCSCPPEY----FLHDDMKNC 156
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 43.9 bits (103), Expect = 6e-05
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
D + ++ N L NI+ + Y I Y + V+ DG+ L
Sbjct: 206 DNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFKEL 261
Score = 31.6 bits (71), Expect = 0.46
Identities = 8/63 (12%), Positives = 12/63 (19%), Gaps = 5/63 (7%)
Query: 105 DERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVL 164
+ L G L I+ +Y+ D N
Sbjct: 245 NPALCVVKNDGTGFKELAKGEFCN-----INVTSQYVYFTDFVSNKEYCTSTQNPDTIKA 299
Query: 165 CHP 167
P
Sbjct: 300 LQP 302
Score = 31.2 bits (70), Expect = 0.67
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 18/140 (12%)
Query: 33 TDDIVD--NTDEDWDKYFKRILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDL 90
++D N D+++ Y+ R N T F++ SLC I++ S L D
Sbjct: 53 SNDTAMYINADKNY-VYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVL----DPDP 107
Query: 91 LNSWDLPAPEIF------PLDERLEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWC 144
L I+ L + + GE + + + + + Y+
Sbjct: 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYN 162
Query: 145 DSHLNTVESVRVDGSHNAVL 164
+ + A+
Sbjct: 163 NPKNGQLYRYDTASQSEALF 182
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 43.3 bits (101), Expect = 7e-05
Identities = 15/132 (11%), Positives = 31/132 (23%), Gaps = 7/132 (5%)
Query: 165 CHPNELRCGSSN-QCVALSKFCDGKPDCSNGEDEGP-----FCNAECTPGQFSCGMGKCI 218
C +E C +C+ FCDG+ DC +G DE P + C
Sbjct: 54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCE 113
Query: 219 PESWKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVD 278
+ + + + +++
Sbjct: 114 DLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELD-EHDHTVSTTQLRGFYNFGKRELLL 172
Query: 279 NTDEDWDKFHQC 290
+ + +
Sbjct: 173 APLKGQSEGYGV 184
Score = 36.8 bits (84), Expect = 0.008
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 8/138 (5%)
Query: 310 CDEEMDCSTDDIVDNTDEDWDKYFSH-NAVLCHPNELRCGSSN-QCVALSKFCDGKPDCS 367
+EE + T D+ T S+ C +E C +C+ FCDG+ DC
Sbjct: 23 IEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCR 82
Query: 368 NGEDEGP------FCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLI 421
+G DE P + + L C +
Sbjct: 83 DGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRAT 142
Query: 422 DGSCDQTCTNTHLSYVCS 439
+T +
Sbjct: 143 LSYELDEHDHTVSTTQLR 160
Score = 29.1 bits (64), Expect = 2.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 3 HQCFNGQVQCALSK-KCIPHNWLCDEEMDCSTDDIVDNTDED 43
H C + +C +CI CD E DC D +DED
Sbjct: 52 HHCDEHESECRGDVPECIHDLLFCDGEKDCR-----DGSDED 88
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 41.7 bits (98), Expect = 2e-04
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 360 CDGKPDCSNGEDEGPFCNNKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDAD 417
+ D + + CE C + KC C C G +
Sbjct: 23 REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK 82
Query: 418 ECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
C +D G CDQ C S VCSC GYTL +GK+C
Sbjct: 83 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 41.2 bits (95), Expect = 2e-04
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 376 CNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQ---CVDADECLID---GSCDQTC 429
C E+ +C + + A C C G PN C E + ++ C
Sbjct: 94 CQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVC 153
Query: 430 TNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
N Y C C EG+T + C +
Sbjct: 154 XNVEGVYXCQCMEGFTFDXEXNVCLGPH 181
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 39.5 bits (92), Expect = 7e-04
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 411 TQCVDADECLI----DGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNV 458
D DEC + +CD C N + CSC GY L + ++C+ ++
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQSL 170
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 38.0 bits (89), Expect = 0.001
Identities = 28/103 (27%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 366 CSNGEDEGPFCNNKADCENLKCSHK--------------CSPTPRGAMCFCPAGQNPNKT 411
CS E F ++ E C C C G
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Query: 412 QCVDADECLID-GSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
+ C +D G CDQ C S VCSC GYTL +GK+C
Sbjct: 77 ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 37.3 bits (87), Expect = 0.003
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 360 CDGKPDCSNGEDEGPFCNNKADCENLKCSHK--CSPTPRGAMCFCPAGQNPNKTQCVDAD 417
+ + + + CE C + C C+C G + +DA
Sbjct: 29 REVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE-LDAT 87
Query: 418 ECLIDGSCDQTCTNTHLS-YVCSCTEGYTLRPDGKSC 453
+ +G C Q C S +CSCT GY L PD KSC
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 36.3 bits (83), Expect = 0.016
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 386 KCSHK--CSPTPRGAMCFCPAGQNPNKTQCVDADECL-----IDGSCDQTCTNTHLSYVC 438
+CS C G C C A N QCV + G + + +
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFEN 73
Query: 439 SCTEGYTLRPDGKSCTAV-NVPQD 461
+ Y + G+S TA+ +P+
Sbjct: 74 TDLHSYVVMNHGRSYTAISTIPET 97
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 35.4 bits (81), Expect = 0.041
Identities = 16/92 (17%), Positives = 22/92 (23%), Gaps = 12/92 (13%)
Query: 366 CSNGEDEGPFCNNKADCENLKCSHKCSPTPRG-----AMCFCPAGQNPNKTQCVDADECL 420
C+ D + C N + C P P + K C + C
Sbjct: 47 CALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCK 106
Query: 421 ID-------GSCDQTCTNTHLSYVCSCTEGYT 445
C + Y C C GY
Sbjct: 107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYA 138
Score = 31.9 bits (72), Expect = 0.48
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 402 CPAGQNPNKTQCVDADECLI------DGSCDQTCTNTHLSYVC-SCTEGYT 445
CP G N T C D DEC + S C NT + C C Y
Sbjct: 30 CPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR 80
Score = 28.1 bits (62), Expect = 8.6
Identities = 41/271 (15%), Positives = 71/271 (26%), Gaps = 31/271 (11%)
Query: 185 CDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEPNTC--I 242
C PD + P C T F C C P LE E C
Sbjct: 47 CALVPDICFSTSKVPRC--VNTQPGFHCL--PCPPRYRGNQPVGVGLEAAKTEKQVCEPE 102
Query: 243 HQCFNGQVQCALSKKCIPH------NWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQ 296
+ C + C +CI + C+ + + D ++ D D D N +
Sbjct: 103 NPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLD---GWPNLNLV 159
Query: 297 CALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVAL 356
CA + C + +D + D N + + N
Sbjct: 160 CATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN----- 214
Query: 357 SKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDA 416
D+ + +C + + G C + + +
Sbjct: 215 --------PRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGD-DVFNER 265
Query: 417 DECLIDGSCDQ--TCTNTHLSYVCSCTEGYT 445
D C + DQ T + + +C +
Sbjct: 266 DNCPYVYNTDQRDTDGDGVGDHCDNCPLVHN 296
Score = 28.1 bits (62), Expect = 9.2
Identities = 23/165 (13%), Positives = 41/165 (24%), Gaps = 2/165 (1%)
Query: 168 NELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCI-PESWKCDG 226
N+ + C+ + C + G FS M KC + DG
Sbjct: 82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDG 141
Query: 227 FVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDK 286
+ + D C + C E+ D + D+D D
Sbjct: 142 LICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDG 201
Query: 287 FHQCFNGQVQCALSKKCIPHN-WLCDEEMDCSTDDIVDNTDEDWD 330
+ ++ + D +C D D +
Sbjct: 202 VTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNN 246
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 32.7 bits (75), Expect = 0.10
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 365 DCSNGEDEGPFCNNKAD-CENLKCSHK--CSPTPRGAMCFCPAGQNPNKTQCVDADECLI 421
+ + D C + C + C + +CFC + D+ LI
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE-GRNCETHKDDQLI 90
Query: 422 D----GSCDQTCTNTHLS-YVCSCTEGYTLRPDGKSC 453
G C+Q C++ + C C EGY+L DG SC
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 31.5 bits (72), Expect = 0.21
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 382 CENLKCSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLID-GSCDQTCTNTHLSYVCSC 440
C+ +CS + + + D D+C +C + SY+C C
Sbjct: 17 CKEEQCSFEEA----REIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 441 TEGYT 445
+
Sbjct: 73 LPAFE 77
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 34.2 bits (77), Expect = 0.11
Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 12/151 (7%)
Query: 205 CTPGQFSCGMGKCIPES--WKCDGFVDCLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHN 262
C ++ + C G + S QC + +C+ +
Sbjct: 23 CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRH 82
Query: 263 WLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIV 322
+C+ + DC D+ ++ C + IP + + T +
Sbjct: 83 LVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ--------YEPIPGSQKAALGYNILTQEDA 134
Query: 323 DNTDEDWDKYFSHNAVLCHPNELRCGSSNQC 353
+ + Y+ + E R +
Sbjct: 135 QSVYD--ASYYGGQCETVYNGEWRELRYDST 163
Score = 31.5 bits (70), Expect = 0.61
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
+ +C + +C+ C+G DC +G DE C + C + IP S K
Sbjct: 65 QCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD-CE-DVRAIDEDCSQYEPIPGSQKA 122
Query: 225 DGFVDCLEDGSDEPNTCIHQCFNGQVQ 251
+ L D + + GQ +
Sbjct: 123 ALGYNIL-TQEDAQSVYDASYYGGQCE 148
Score = 28.4 bits (62), Expect = 6.2
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 340 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDE---GPFCNNKADCENLKCSHKCSPTPR 396
+ +C + +C+ C+G DC +G DE DC +
Sbjct: 65 QCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAAL 124
Query: 397 GAMCF 401
G
Sbjct: 125 GYNIL 129
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 32.2 bits (73), Expect = 0.29
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 412 QCVDADEC----LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSC 453
VD DEC + SCD C N Y CSC GY L D ++C
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 32.2 bits (72), Expect = 0.45
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 12/128 (9%)
Query: 347 CGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAM---CFCP 403
C + QC + C D + + FC ++ +C C + CP
Sbjct: 54 CQNHKQCSKCLEPCKESGDLRKHQCQS-FCEPLFPKKSYECLTSCEFLKYILLVKQGDCP 112
Query: 404 AGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVNVPQDEP 463
A + + + C +D C C C+ G VP
Sbjct: 113 APEKASGFAAACVESCEVDNECSGV-------KKC-CSNGCGHTCQVPKTLYKGVPLKPR 164
Query: 464 ASIIFSST 471
+ F+
Sbjct: 165 KELRFTEL 172
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 31.5 bits (71), Expect = 0.59
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 412 QCVDADEC----LIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCT 454
VD DEC + SCD C N Y CSC GY L D ++C
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.7 bits (71), Expect = 0.62
Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 18/143 (12%)
Query: 165 CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKC 224
C N + +CVA C N +G C C P + +C+ S+
Sbjct: 212 CLGNCSQPDDPTKCVA----------CRNFYLDG-RCVETCPPPYYHFQDWRCVNFSFCQ 260
Query: 225 DGFVDCLEDGSDEP-------NTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIV 277
D C N CI +C +G + + C P C + +
Sbjct: 261 DLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKT 320
Query: 278 DNTDEDWDKFHQCFNGQVQCALS 300
++ + C ++
Sbjct: 321 IDSVTSAQELRGCTVINGSLIIN 343
Score = 28.7 bits (63), Expect = 5.4
Identities = 22/178 (12%), Positives = 41/178 (23%), Gaps = 12/178 (6%)
Query: 270 DCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDW 329
+ IV N D++ + C + + + S V T
Sbjct: 139 SVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKS 198
Query: 330 DKYFSHNAVL---CHPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLK 386
+ C N + +CVA F C + C N
Sbjct: 199 HGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD-GRCVETCPPPYYHFQDWRCVNFS 257
Query: 387 CSHKCSPTPRGAMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGY 444
+ + + +C+ C T + +C+ G
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIP--------ECPSGYTMNSSNLLCTPCLGP 307
Score = 28.3 bits (62), Expect = 6.3
Identities = 30/190 (15%), Positives = 49/190 (25%), Gaps = 10/190 (5%)
Query: 131 SLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPD 190
+LVI + +L + V N LC+ + V + K D
Sbjct: 92 ALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDD 151
Query: 191 CSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVD-----CLEDGSDEPNTCIH-Q 244
D P T + G+ + W C G C H +
Sbjct: 152 NEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE 211
Query: 245 CFNGQVQCALSKKCIPHNWLCDE---EMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSK 301
C Q KC+ + C F C + +C S+
Sbjct: 212 CLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCV-NFSFCQDLHHKCKNSR 270
Query: 302 KCIPHNWLCD 311
+ H ++
Sbjct: 271 RQGCHQYVIH 280
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 31.3 bits (71), Expect = 0.72
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 10/70 (14%)
Query: 185 CDGKPDCSNGEDE---GPFCNAECTPGQFSCGMGKCI----PESWKC--DGFVDCLEDGS 235
C D +G E GP Q+SC + C DGF G
Sbjct: 83 CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTS-SKGE 141
Query: 236 DEPNTCIHQC 245
C C
Sbjct: 142 KSLPVCEPVC 151
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 31.1 bits (69), Expect = 0.86
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 9/130 (6%)
Query: 230 CLEDGSDEPNTCIHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTD--DIVDNTDEDW--- 284
++ +C +CF Q +C + LC C D ++ T W
Sbjct: 12 SDSPWTNTSGSCKGRCFELQEVGPPDCRC---DNLCKSYSSCCHDFDELCLKTARGWECT 68
Query: 285 -DKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPN 343
D+ + N + C S+ C+ C + D+ +
Sbjct: 69 KDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRP 128
Query: 344 ELRCGSSNQC 353
L S +
Sbjct: 129 PLIIFSVDGF 138
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 2.10A {Salmonella typhimurium}
Length = 463
Score = 31.0 bits (69), Expect = 0.98
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 51 ILNGTHTLALEFNHRNQSLCFIQQQNVSSVRLRCAQINDLLNSWDLPAPEIFPLDERLEK 110
++ L +F +Q L +Q ++ AQIN+ +I L++++ +
Sbjct: 69 LIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAK-------QIANLNDQISR 121
Query: 111 AGMHGENRSP 120
G SP
Sbjct: 122 MTGVGAGASP 131
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 30.4 bits (68), Expect = 1.5
Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 13/121 (10%)
Query: 342 PNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHK----CSPTPRG 397
N L C +C G C G C C + K C RG
Sbjct: 570 SNGLLCSGRGKCE------CGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRG 623
Query: 398 AMCFCPAGQNPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCTEGYTLRPDGKSCTAVN 457
A+ + + E G CT + C + D + +
Sbjct: 624 ALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKN---EDDCVVRFQYYEDSSGKSILY 680
Query: 458 V 458
V
Sbjct: 681 V 681
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.6
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 266 DEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNT 325
D + + +D ++++Q + QV+ K +N + D+
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVE-----KNKINNRIADKAF-------YQQP 149
Query: 326 DED 328
D D
Sbjct: 150 DAD 152
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 28.5 bits (63), Expect = 1.9
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 375 FCNNKADCENLKCSH--KCSPTPRG-AMCFCPAGQNPNKTQCVDADECLID--GSCD--Q 427
++ C + C G C G +CV A + G C
Sbjct: 6 NMSSAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEA 65
Query: 428 TCTNTHLS-YVCSCTEGYT-LRPDGKSCTAVNVP 459
CT C CT+ + +G C++ + P
Sbjct: 66 ECTMDDKKEVECKCTKEGSEPLFEGVFCSSSSGP 99
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.3 bits (67), Expect = 2.0
Identities = 27/170 (15%), Positives = 43/170 (25%), Gaps = 33/170 (19%)
Query: 319 DDIVDNTDEDWDKYFSHNAVLCHPN-ELRCGSSNQCVALSKFCDGKPDCSNGED------ 371
I+D+ +++ + C C A C
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCP 193
Query: 372 ---EGPFCNNKADCENLKCSHKCSPTPRGAMCF--------------CPAGQNPNK-TQC 413
+ C + C + +C CS C CP + +C
Sbjct: 194 TICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRC 253
Query: 414 VDADECL-IDGSCDQTCTNTHLSYV-----CS--CTEGYTLRPDGKSCTA 455
V+ C + C + YV C C GYT+ CT
Sbjct: 254 VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP 303
Score = 28.3 bits (62), Expect = 6.9
Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 8/196 (4%)
Query: 131 SLVIDYNQDILYWCDSHLNTVESVRVDGSHNAVLCHPNELRCGSSNQCVALSKFCDGKPD 190
+LVI + +L + V N LC+ + V + K D
Sbjct: 92 ALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDD 151
Query: 191 CSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVD-----CLEDGSDEPNTCIH-Q 244
D P T + G+ + W C G C H +
Sbjct: 152 NEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE 211
Query: 245 CFNGQVQCALSKKCI--PHNWLCDEEMDCSTDDIVDNTDEDWDKFHQCFNGQVQCALSKK 302
C Q KC+ + +L ++ D F C + +C S++
Sbjct: 212 CLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271
Query: 303 CIPHNWLCDEEMDCST 318
H ++
Sbjct: 272 QGCHQYVIHNNKCIPE 287
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 30.2 bits (67), Expect = 2.0
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 363 KPDCSNGEDEGPFCNNKADCENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQCVDADECL 420
+ + G C + C + C +C C ++ +A
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Query: 421 IDGS 424
DGS
Sbjct: 663 YDGS 666
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 28.3 bits (64), Expect = 2.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 413 CVDADECLIDGS-CDQ--TCTNTHLSYVCSCTEGYT 445
D DEC + + C+ C NT S+ C C +GYT
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 37
Score = 27.2 bits (61), Expect = 6.9
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 372 EGPFCNNKAD-CENLKCSH--KCSPTPRGAMCFCPAGQNPNKTQC-VDADECLIDGSCDQ 427
GP C + C + C + C C C G C V+ DEC C
Sbjct: 37 TGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYE--GVHCEVNTDECA-SSPCLH 93
Query: 428 --TCTNTHLSYVCSCTEGYT 445
C + + C C G+T
Sbjct: 94 NGRCLDKINEFQCECPTGFT 113
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 28.6 bits (64), Expect = 4.5
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 14/91 (15%)
Query: 297 CALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGSSNQCVAL 356
K CI CD + T + V NT + N +N+C +
Sbjct: 42 DQGKKVCIV-YHRCDGVTNTVTPEEVINTTGEGIFDIREN-------------ANECESY 87
Query: 357 SKFCDGKPDCSNGEDEGPFCNNKADCENLKC 387
C G P+ P + C
Sbjct: 88 LDVCCGLPEGGVLPTPSPTPPVVPVLKPSFC 118
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.0 bits (59), Expect = 4.9
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 378 NKADCENLKCSHK--CSPTPRG-AMCFCPAGQNPNKTQCVDADE--CLI-DGSCD--QTC 429
++ C +C C C C +CV+ C +G CD C
Sbjct: 3 SQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKC 62
Query: 430 TNT-----HLSYVCSCTEGYTLRP-DGKSCT 454
T C CT+ + DG C+
Sbjct: 63 TEEDSGSNGKKITCECTKPDSYPLFDGIFCS 93
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 28.6 bits (63), Expect = 5.2
Identities = 25/162 (15%), Positives = 43/162 (26%), Gaps = 16/162 (9%)
Query: 283 DWDKFHQCFNGQ--VQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLC 340
DW + V K+C EE ++N + +C
Sbjct: 126 DWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMC 185
Query: 341 HPNELRCGSSNQCVALSKFCDGKPDCSNGEDEGPFCNNKADCENLKCSHKCSPTPRGAMC 400
+ + C G CS ++ C + + C P
Sbjct: 186 PSTCGKRACTENNECCHPECLGS--CSAPDN----DTACVACRHYYYAGVCVPA------ 233
Query: 401 FCPAGQ-NPNKTQCVDADECLIDGSCDQTCTNTHLSYVCSCT 441
CP +CVD D C S + + + + + C
Sbjct: 234 -CPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECM 274
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 27.9 bits (61), Expect = 6.1
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 179 VALSKFCDGKPDCSNGEDEGPFCNAECTPGQFSCGMGKCIPESWKCDGFVDCLEDGSDEP 238
+A+ + C+ N E GQF+ +C G L G D
Sbjct: 150 LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFAT--FQCSAIGRTVAGDRLWL-QGIDVR 206
Query: 239 NT 240
+
Sbjct: 207 DA 208
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 25.7 bits (56), Expect = 8.1
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 415 DADECLIDGSCDQTCTNTHLSYVCSCTEGYT 445
DA CL D C Y C C G+
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFM 42
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 27.9 bits (62), Expect = 9.7
Identities = 15/109 (13%), Positives = 22/109 (20%), Gaps = 9/109 (8%)
Query: 290 CFNGQVQCALSKKCIPHNWLCDEEMDCSTDDIVDNTDEDWDKYFSHNAVLCHPNELRCGS 349
C + S EE+D + + NAV C +
Sbjct: 283 CRHSIPVFCHSS-FYHDTDFLGEELDIVAAKSHEACQKLCT-----NAVRCQFFTYTP-A 335
Query: 350 SNQCVALSKFCDGK--PDCSNGEDEGPFCNNKADCENLKCSHKCSPTPR 396
C C K + S + L T
Sbjct: 336 QASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKI 384
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.465
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,625,365
Number of extensions: 469749
Number of successful extensions: 2494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1806
Number of HSP's successfully gapped: 535
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)