RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14265
(489 letters)
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 426 bits (1097), Expect = e-146
Identities = 104/325 (32%), Positives = 170/325 (52%), Gaps = 11/325 (3%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
M P++ G L L + + + +K+ G Y DVI ST FG+ I+SL NP
Sbjct: 123 MVPIIAQYGDVLVRNLR--REAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDP 180
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYR-E 119
F +K++ + + + + + + + ++ + R+ F V + R E
Sbjct: 181 FVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLE 240
Query: 120 QNNIKRNDFINIMMELKKTDPD-----ITEELITAQCFLFFFAGFDTSSTVLTFSLYELA 174
R DF+ +M++ + + +++ + AQ +F FAG++T+S+VL+F +YELA
Sbjct: 241 DTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELA 300
Query: 175 KNKSIQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPY 234
+ +Q KL+ EI+ TY++ +M LD V+ E+LR++ +LERV +
Sbjct: 301 THPDVQQKLQEEIDAVLPN-KAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDV 359
Query: 235 QLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGP 294
++ + + KG + IP Y LH DP+ + P+ F PERF+ +N DNI Y Y PFG GP
Sbjct: 360 EIN--GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGP 417
Query: 295 RNCIGKRFALLQLKSGLAHSLSNFE 319
RNCIG RFAL+ +K L L NF
Sbjct: 418 RNCIGMRFALMNMKLALIRVLQNFS 442
Score = 146 bits (371), Expect = 7e-39
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 327 EMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDC 386
EM P++ G L L + + + +K+ G Y DVI ST FG+ I+SL NP
Sbjct: 122 EMVPIIAQYGDVLVRNLR--REAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQD 179
Query: 387 EFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYR- 445
F +K++ + + + + + + + ++ + R+ F V + R
Sbjct: 180 PFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRL 239
Query: 446 EQNNIKRNDFINIMMELKKTDPGN 469
E R DF+ +M++ + +
Sbjct: 240 EDTQKHRVDFLQLMIDSQNSKETE 263
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 271 bits (694), Expect = 1e-85
Identities = 57/330 (17%), Positives = 100/330 (30%), Gaps = 27/330 (8%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
+FP + L L D + + +G +
Sbjct: 155 IFPEFQATYSELFDSLE--KELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKLKADA 212
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ 120
I+K + L P L + ++ F L Y+
Sbjct: 213 PGLITKWVL--------------FNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRL 258
Query: 121 NNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAK-NKSI 179
I++E K EE F F + + + + + +
Sbjct: 259 YEFFLESAGEILVEADKLGIS-REEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQV 317
Query: 180 QSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNT 239
++L EI GGELT + +M L V+ E LR P++ A + + +
Sbjct: 318 HNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESH 377
Query: 240 D--IVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFG------ 291
D V G ++ DP+I+ D F PERF E + + + G
Sbjct: 378 DAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETP 437
Query: 292 -EGPRNCIGKRFALLQLKSGLAHSLSNFEW 320
G + C GK F +L + + ++
Sbjct: 438 TVGNKQCAGKDFVVLVARLFVIEIFRRYDS 467
Score = 57.2 bits (138), Expect = 5e-09
Identities = 33/256 (12%), Positives = 57/256 (22%), Gaps = 34/256 (13%)
Query: 209 LDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDV 268
++ K +R Y + + N +V K F L D + D+
Sbjct: 54 AEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVL----FDVDKVEKKDL 109
Query: 269 FDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEM 328
P++ K LKS N +
Sbjct: 110 LTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSR--------------NRI 155
Query: 329 FPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEF 388
FP + L L D + + +G +
Sbjct: 156 FPEFQATYSELFDSLE--KELSLKGKADFGGSSDGTAFNFLARAFYGTNPADTKLKADAP 213
Query: 389 RRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQN 448
I+K + L P L + ++ F L Y+
Sbjct: 214 GLITKWVL--------------FNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLY 259
Query: 449 NIKRNDFINIMMELKK 464
I++E K
Sbjct: 260 EFFLESAGEILVEADK 275
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 268 bits (688), Expect = 4e-85
Identities = 73/333 (21%), Positives = 129/333 (38%), Gaps = 12/333 (3%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
+ L IL + +++ L D++ FG+E + L
Sbjct: 105 LMETFNEKAEQLVEILE--AKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKP 162
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ 120
+ K M R + L LR+ + LR+ D V + ++
Sbjct: 163 LSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQ---VGRDWVQRRREALKR 219
Query: 121 NNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQ 180
D + + LK + +E + FF AG +TS+ L F++ EL++ I
Sbjct: 220 GEEVPADILTQI--LKAEEGAQDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIV 277
Query: 181 SKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTD 240
++L+ E+ D L +E + L +V+KESLR+Y P R+ +
Sbjct: 278 ARLQAEV-DEVIGSKRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLI--DG 334
Query: 241 IVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGK 300
+ V T + Y + + +P F+P+RF P P + Y PF G R+CIG+
Sbjct: 335 VRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAP--KPRFTYFPFSLGHRSCIGQ 392
Query: 301 RFALLQLKSGLAHSLSNFEWDSDHTNEMFPLME 333
+FA +++K +A L E+ +
Sbjct: 393 QFAQMEVKVVMAKLLQRLEFRLVPGQRFGLQEQ 425
Score = 64.6 bits (158), Expect = 3e-11
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 5/136 (3%)
Query: 326 NEMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPD 385
+ L IL + +++ L D++ FG+E + L
Sbjct: 103 VSLMETFNEKAEQLVEILE--AKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQ 160
Query: 386 CEFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYR 445
+ K M R + L LR+ + LR+ D V +
Sbjct: 161 KPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQ---VGRDWVQRRREAL 217
Query: 446 EQNNIKRNDFINIMME 461
++ D + +++
Sbjct: 218 KRGEEVPADILTQILK 233
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 267 bits (685), Expect = 1e-84
Identities = 62/333 (18%), Positives = 115/333 (34%), Gaps = 33/333 (9%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
+ P ET L L K+ + + +G F + E
Sbjct: 137 VIPQFETTYTELFEGLE--AELAKNGKAAFNDVGEQAAFRFLGRAYFN--------SNPE 186
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ 120
++ T L L L P L + + + F L +Y +
Sbjct: 187 ETKLGTSAPT------LISSWVLFNLAPTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKL 240
Query: 121 NNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELA-KNKSI 179
+ ++ +ME + +E + F F F + +L + +++
Sbjct: 241 YDYFQSVATP-VMEQAEKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENL 299
Query: 180 QSKLRNEINDTKAKYG-GELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPN 238
++L EI YG G +T E+ +MPL V+ ESLR+ P+ A + + +
Sbjct: 300 HTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIES 359
Query: 239 TD--IVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGP-- 294
D V KG +F DP+++ P+ + P+RF + Y+ + GP
Sbjct: 360 HDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGDGE---ALLKYVWWSNGPET 416
Query: 295 -------RNCIGKRFALLQLKSGLAHSLSNFEW 320
+ C GK F +L + + ++
Sbjct: 417 ESPTVENKQCAGKDFVVLITRLFVIELFRRYDS 449
Score = 51.8 bits (124), Expect = 3e-07
Identities = 32/245 (13%), Positives = 65/245 (26%), Gaps = 39/245 (15%)
Query: 229 VAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYL 288
+ P+ N ++V K F L+ D D+F
Sbjct: 56 MPPGPFVSSNPKVIVLLDAKSFPILF----DVSKVEKKDLFTGTYMPSTKLTGGYRVLSY 111
Query: 289 PFGEGPRNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEMFPLMETCGRNLETILTTLDY 348
PR+ K LK+ + P ET L L
Sbjct: 112 LDPSEPRHAQLKNLLFFMLKNSSNR--------------VIPQFETTYTELFEGLEA--- 154
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNN-MRLQII 407
++ + DV F + N + E ++ T ++ + +
Sbjct: 155 -------ELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPEETKLGTSAPTLISSWVLFNLA 207
Query: 408 LALILLIPYL----------RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN 457
L L +P+ K +F V + E+ + +++ ++
Sbjct: 208 PTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAEKLGVPKDEAVH 267
Query: 458 IMMEL 462
++
Sbjct: 268 NILFA 272
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 253 bits (648), Expect = 4e-79
Identities = 69/307 (22%), Positives = 130/307 (42%), Gaps = 28/307 (9%)
Query: 23 KKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILA 82
+ +V E L + + G EI + +++ + +
Sbjct: 139 GESGEKNVFEALSELIILTASHCLHGKEIR------SQLNEKVAQLYADLDGGFSHAAWL 192
Query: 83 L--ILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIMMELKK--- 137
L L +P R+ +A D+ ++ + R Q+ K +D + +++
Sbjct: 193 LPGWLPLPSFRRR-------DRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDG 245
Query: 138 ---TDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKY 194
TD ++ LI AG TSST + + LA++K++Q K E +
Sbjct: 246 RPLTDDEVAGMLIG-----LLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGEN 300
Query: 195 GGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLY 254
LTY+ ++ LLD+ IKE+LR+ P+ + R+A P + I G ++ +
Sbjct: 301 LPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIP--PGHQVCVSPT 358
Query: 255 GLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHS 314
+ + F+P+R+ +N + +AY+PFG G CIG+ FA +Q+K+ +
Sbjct: 359 VNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTM 418
Query: 315 LSNFEWD 321
L +E+D
Sbjct: 419 LRLYEFD 425
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 16/132 (12%)
Query: 350 KKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILA 409
+ +V E L + + G EI + +++ + +
Sbjct: 139 GESGEKNVFEALSELIILTASHCLHGKEIR------SQLNEKVAQLYADLDGGFSHAAWL 192
Query: 410 L--ILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIMMELKKTDP 467
L L +P R+ +A D+ ++ + R Q+ K +D + +++ D
Sbjct: 193 LPGWLPLPSFRRR-------DRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKD- 244
Query: 468 GNYLENKPIVEN 479
G L + +
Sbjct: 245 GRPLTDDEVAGM 256
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 246 bits (629), Expect = 3e-76
Identities = 79/337 (23%), Positives = 138/337 (40%), Gaps = 19/337 (5%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDC- 59
+M L + + + I+V E + R D IG F NS
Sbjct: 115 YHAMMVDIAVQL---VQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPH 171
Query: 60 EFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYRE 119
F E N + R+F + ++ D+V + ++ R+
Sbjct: 172 PFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMN-------DLVDKIIADRK 224
Query: 120 QNNIKRNDFINIMMELK--KTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNK 177
+ + +D + M+ K +T + +E I Q F AG +T+S +L+F+LY L KN
Sbjct: 225 ASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNP 284
Query: 178 SIQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLP 237
+ K E +Y+ ++ + V+ E+LR++ A L
Sbjct: 285 HVLQKAAEEAARVLV--DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLG 342
Query: 238 NTDIVVDKGTKMFIPLYGLHHDPEIYP-NPDVFDPERFAPENADNIPNYAYLPFGEGPRN 296
+ ++KG ++ + + LH D I+ + + F PERF EN IP +A+ PFG G R
Sbjct: 343 G-EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAIPQHAFKPFGNGQRA 399
Query: 297 CIGKRFALLQLKSGLAHSLSNFEWDSDHTNEMFPLME 333
CIG++FAL + L L +F+++ E+
Sbjct: 400 CIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKET 436
Score = 61.5 bits (150), Expect = 2e-10
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 11/154 (7%)
Query: 327 EMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDC 386
+M L + + + I+V E + R D IG F NS
Sbjct: 114 GYHAMMVDIAVQL---VQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQP 170
Query: 387 -EFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYR 445
F E N + R+F + ++ D+V + ++ R
Sbjct: 171 HPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMN-------DLVDKIIADR 223
Query: 446 EQNNIKRNDFINIMMELKKTDPGNYLENKPIVEN 479
+ + + +D + M+ K + G L+++ I
Sbjct: 224 KASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQ 257
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 245 bits (628), Expect = 3e-76
Identities = 59/319 (18%), Positives = 122/319 (38%), Gaps = 27/319 (8%)
Query: 23 KKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE--FRRISKEMFTENNNMRLQII 80
+ +++D R V + + + + M+ M + +
Sbjct: 147 QPGKTVDATSESFRVAVRVAARCLLRGQYMDERAERLCVALATVFRGMYRR---MVVPLG 203
Query: 81 LALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIMMELKK--- 137
L +P R+F A +V + ++ R + K +D + ++E K
Sbjct: 204 PLYRLPLPANRRF-------NDALADLHLLVDEIIAERRASGQKPDDLLTALLEAKDDNG 256
Query: 138 ---TDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKY 194
+ +I ++++ G +T ++ + + L LA + ++R+E+
Sbjct: 257 DPIGEQEIHDQVVA-----ILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTG-- 309
Query: 195 GGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLY 254
G + +E ++ VI E++R+ + L R A +L + G + Y
Sbjct: 310 GRPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELG--GYRIPAGADIIYSPY 367
Query: 255 GLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHS 314
+ DP+ Y + FDP+R+ PE A N+P YA PF G R C F++ QL A
Sbjct: 368 AIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSMAQLTLITAAL 427
Query: 315 LSNFEWDSDHTNEMFPLME 333
+ + ++ + +
Sbjct: 428 ATKYRFEQVAGSNDAVRVG 446
Score = 41.1 bits (97), Expect = 6e-04
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 350 KKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE--FRRISKEMFTENNNMRLQII 407
+ +++D R V + + + + M+ M + +
Sbjct: 147 QPGKTVDATSESFRVAVRVAARCLLRGQYMDERAERLCVALATVFRGMYRR---MVVPLG 203
Query: 408 LALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIMME 461
L +P R+F A +V + ++ R + K +D + ++E
Sbjct: 204 PLYRLPLPANRRF-------NDALADLHLLVDEIIAERRASGQKPDDLLTALLE 250
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 246 bits (629), Expect = 4e-76
Identities = 79/335 (23%), Positives = 141/335 (42%), Gaps = 15/335 (4%)
Query: 1 MFPLMETCGRNLETILTTL--DYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPD 58
PL++ R+ ++L + S D+ + L R+ + I + +FG LE
Sbjct: 127 FLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGERQGMLEEVV 186
Query: 59 C----EFRRISKEMFTENNN-MRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQ 113
F +MF + + L L + + ++ ++ A + +
Sbjct: 187 NPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKADIYTQNFYW 246
Query: 114 NVSYREQNNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYEL 173
Q +D+ I+ L D ++ E I A G DT+S L + LYE+
Sbjct: 247 E---LRQKGSVHHDYRGILYRLLG-DSKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEM 302
Query: 174 AKNKSIQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRP 233
A+N +Q LR E+ + + +PLL IKE+LR++ L+R
Sbjct: 303 ARNLKVQDMLRAEVLAARHQ-AQGDMATMLQLVPLLKASIKETLRLHPISVTLQRYLVND 361
Query: 234 YQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEG 293
L + I T + + +Y L +P + +P+ FDP R+ ++ NI + L FG G
Sbjct: 362 LVLRDYMIP--AKTLVQVAIYALGREPTFFFDPENFDPTRWLSKD-KNITYFRNLGFGWG 418
Query: 294 PRNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEM 328
R C+G+R A L++ L + L NF + H +++
Sbjct: 419 VRQCLGRRIAELEMTIFLINMLENFRVEIQHLSDV 453
Score = 54.3 bits (131), Expect = 5e-08
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 326 NEMFPLMETCGRNLETILTTL--DYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLEN 383
PL++ R+ ++L + S D+ + L R+ + I + +FG LE
Sbjct: 125 KNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVIFGERQGMLEE 184
Query: 384 PDC----EFRRISKEMFTENNN-MRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVV 438
F +MF + + L L + + ++ ++ A +
Sbjct: 185 VVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKADIYTQNF 244
Query: 439 HQNVSYREQNNIKRNDFINIMMELKKTD 466
+ Q +D+ I+ L
Sbjct: 245 YWE---LRQKGSVHHDYRGILYRLLGDS 269
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 235 bits (601), Expect = 3e-72
Identities = 63/303 (20%), Positives = 131/303 (43%), Gaps = 19/303 (6%)
Query: 24 KHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILAL 83
+ ID+ ++ + + G + + D F ++ E+ +
Sbjct: 130 EAGEIDLLDFFAELTIYTSSACLIGKKFR--DQLDGRFAKLYHEL---ERGTDPLAYVDP 184
Query: 84 ILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ--NNIKRNDFINIMMELK--KTD 139
L I R+ L D+++ + D +++++ +K
Sbjct: 185 YLPIESFRRRDEARNGLVA---LVADIMNG---RIANPPTDKSDRDMLDVLIAVKAETGT 238
Query: 140 PDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELT 199
P + + IT FAG TSS +++L EL +++ + + +E+ D G ++
Sbjct: 239 PRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDEL-DELYGDGRSVS 297
Query: 200 YESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHD 259
+ + ++P L+ V+KE+LR++ PL L RVA +++ I +G + +
Sbjct: 298 FHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRI--HEGDLVAASPAISNRI 355
Query: 260 PEIYPNPDVFDPERFAP-ENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHSLSNF 318
PE +P+P F P R+ D + + ++PFG G C+G FA++Q+K+ + L +
Sbjct: 356 PEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREY 415
Query: 319 EWD 321
E++
Sbjct: 416 EFE 418
Score = 35.7 bits (83), Expect = 0.035
Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 13/123 (10%)
Query: 351 KHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILAL 410
+ ID+ ++ + + G + + D F ++ E+ +
Sbjct: 130 EAGEIDLLDFFAELTIYTSSACLIGKKFR--DQLDGRFAKLYHEL---ERGTDPLAYVDP 184
Query: 411 ILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ--NNIKRNDFINIMMELKKTDPG 468
L I R+ L D+++ + D +++++ +K
Sbjct: 185 YLPIESFRRRDEARNGLVA---LVADIMNG---RIANPPTDKSDRDMLDVLIAVKAETGT 238
Query: 469 NYL 471
Sbjct: 239 PRF 241
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 233 bits (597), Expect = 3e-71
Identities = 61/333 (18%), Positives = 125/333 (37%), Gaps = 23/333 (6%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
M + + L + + +DV L R M D + + ++
Sbjct: 160 MVTVCAESLKTHLDRLE--EVTNESGYVDVLTLLRRVMLDTSNTLFLRIPLDESA----- 212
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVV--HQNVSYR 118
+ F + ++ + + +K+ + L+ ++ +
Sbjct: 213 IVVKIQGYFDAWQALLIKPDI-FFKISWLYKKYEKSVKDLKD---AIEVLIAEKRRRIST 268
Query: 119 EQNNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKS 178
E+ + DF ++ +K D+T E + A DT S L F L+ +AK+ +
Sbjct: 269 EEKLEECMDFATELILAEK-RGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPN 327
Query: 179 IQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPN 238
++ + EI + ++ + ++ +++ I ES+R + + R A +
Sbjct: 328 VEEAIIKEIQTVIGE--RDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDG 385
Query: 239 TDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCI 298
+ KGT + + + +H E +P P+ F E FA P + PFG GPR C
Sbjct: 386 YPVK--KGTNIILNIGRMHR-LEFFPKPNEFTLENFAKNV----PYRYFQPFGFGPRGCA 438
Query: 299 GKRFALLQLKSGLAHSLSNFEWDSDHTNEMFPL 331
GK A++ +K+ L L F + + +
Sbjct: 439 GKYIAMVMMKAILVTLLRRFHVKTLQGQCVESI 471
Score = 45.0 bits (107), Expect = 4e-05
Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 13/144 (9%)
Query: 326 NEMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPD 385
M + + L + + +DV L R M D + + ++
Sbjct: 158 VRMVTVCAESLKTHLDRLE--EVTNESGYVDVLTLLRRVMLDTSNTLFLRIPLDES---- 211
Query: 386 CEFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVV--HQNVS 443
+ F + ++ + + +K+ + L+ ++ +
Sbjct: 212 -AIVVKIQGYFDAWQALLIKPDI-FFKISWLYKKYEKSVKDLKD---AIEVLIAEKRRRI 266
Query: 444 YREQNNIKRNDFINIMMELKKTDP 467
E+ + DF ++ +K
Sbjct: 267 STEEKLEECMDFATELILAEKRGD 290
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 228 bits (584), Expect = 2e-69
Identities = 64/339 (18%), Positives = 122/339 (35%), Gaps = 31/339 (9%)
Query: 1 MFPLM-ETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPD- 58
+ + E LE + D ++ + D+ L ++ + I ++ L+
Sbjct: 143 LDKKINEVLADFLERMDELCD--ERGRIPDLYSELNKWSFESICLVLYEKRFGLLQKETE 200
Query: 59 ---CEFRRISKEMFTENNNMRLQII-LALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQN 114
F K M + M + + L L + + K +
Sbjct: 201 EEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIFK---SVKPCIDNR 257
Query: 115 VSYREQNNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELA 174
+ Q DF+ + + ++++ + A A +T++ L + LY L+
Sbjct: 258 LQRYSQQ--PGADFLCDIYQQDH----LSKKELYAAVTELQLAAVETTANSLMWILYNLS 311
Query: 175 KNKSIQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPY 234
+N Q +L E+ + E MP L +KES+R+ + R
Sbjct: 312 RNPQAQRRLLQEV-QSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTL---- 366
Query: 235 QLPNTDIVVD-----KGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLP 289
+ V+ KGT + + L + + + F PER+ + I +A+LP
Sbjct: 367 ---DKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKE-KKINPFAHLP 422
Query: 290 FGEGPRNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEM 328
FG G R CIG+R A LQL L + ++ + +
Sbjct: 423 FGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATDNEPV 461
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 13/144 (9%)
Query: 327 EMFPLM-ETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPD 385
++ + E LE + D ++ + D+ L ++ + I ++ L+
Sbjct: 142 KLDKKINEVLADFLERMDELCD--ERGRIPDLYSELNKWSFESICLVLYEKRFGLLQKET 199
Query: 386 ----CEFRRISKEMFTENNNMRLQII-LALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQ 440
F K M + M + + L L + + K +
Sbjct: 200 EEEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIFK---SVKPCIDN 256
Query: 441 NVSYREQNNIKRNDFINIMMELKK 464
+ Q DF+ + +
Sbjct: 257 RLQRYSQQ--PGADFLCDIYQQDH 278
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 228 bits (584), Expect = 2e-69
Identities = 59/353 (16%), Positives = 124/353 (35%), Gaps = 32/353 (9%)
Query: 3 PLMETCGRNLETIL--TTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
L E NL +L + + + ++ ++ T++G+E +
Sbjct: 125 ALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTLYGIEALPRTHES-- 182
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVS-YRE 119
+ ++ L L+P L S + + + + +S R
Sbjct: 183 -----QAQDRVHSADVFHTFRQLDRLLPKLA-RGSLSVGDKDHMCSVKSRLWKLLSPARL 236
Query: 120 QNNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSI 179
R+ ++ + + ++EE+ L +A + L L KN
Sbjct: 237 ARRAHRSKWLESYLLHLEEM-GVSEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNPEA 295
Query: 180 QSKLRNEI------NDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRP 233
+ +R E+ + L + + P+LD V+ ESLR+ + R
Sbjct: 296 LAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLT-AAPFITREVVVD 354
Query: 234 YQLPNTDI---VVDKGTKMFI-PLYGLHHDPEIYPNPDVFDPERFAPENAD--------- 280
+P D + +G ++ + P DPEIY +P+VF RF +
Sbjct: 355 LAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDG 414
Query: 281 NIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEMFPLME 333
+P+G G +C+G+ +A+ +K + L + + + + + P +
Sbjct: 415 KRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFD 467
Score = 46.7 bits (111), Expect = 1e-05
Identities = 15/148 (10%), Positives = 42/148 (28%), Gaps = 14/148 (9%)
Query: 322 SDHTNEMFPLMETCGRNLETIL--TTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEIN 379
+ M NL +L + + + ++ ++ T++G+E
Sbjct: 120 HRELQALTEAMY---TNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTLYGIEAL 176
Query: 380 SLENPDCEFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVH 439
+ + ++ L L+P L S + + +
Sbjct: 177 PRTHES-------QAQDRVHSADVFHTFRQLDRLLPKLA-RGSLSVGDKDHMCSVKSRLW 228
Query: 440 QNVS-YREQNNIKRNDFINIMMELKKTD 466
+ +S R R+ ++ + +
Sbjct: 229 KLLSPARLARRAHRSKWLESYLLHLEEM 256
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 224 bits (574), Expect = 2e-68
Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 30/308 (9%)
Query: 23 KKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILA 82
K I++ E + + +FG ++ + F ++ +M + + + +
Sbjct: 133 KDEGEINLLEDCSTMIINTACQCLFGEDLRKRLDAR-RFAQLLAKMESSLIPAAVFLPIL 191
Query: 83 LILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIMMELKK----- 137
L L +P + L+K +++ + +D ++ ++
Sbjct: 192 LKLPLPQSARCHEARTELQK---ILSEIIIARKEEEVNKDSSTSDLLSGLLSAVYRDGTP 248
Query: 138 -TDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQS--KLRNEINDTKAKY 194
+ ++ ++ FAG TSS T+S+ L +++ LR EI + +
Sbjct: 249 MSLHEVCGMIVA-----AMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEE----F 299
Query: 195 GGEL-TYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPL 253
+L +EMP ++ +ES+R PL L R ++ VV KG +
Sbjct: 300 PAQLNYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVG--SYVVPKGDIIACSP 357
Query: 254 YGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAH 313
HHD E +P P +DPER A++ FG G CIG++F LLQ+K+ LA
Sbjct: 358 LLSHHDEEAFPEPRRWDPERDEK------VEGAFIGFGAGVHKCIGQKFGLLQVKTILAT 411
Query: 314 SLSNFEWD 321
+ ++++
Sbjct: 412 AFRSYDFQ 419
Score = 38.8 bits (91), Expect = 0.004
Identities = 13/112 (11%), Positives = 40/112 (35%), Gaps = 4/112 (3%)
Query: 350 KKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILA 409
K I++ E + + +FG ++ + F ++ +M + + + +
Sbjct: 133 KDEGEINLLEDCSTMIINTACQCLFGEDLRKRLDAR-RFAQLLAKMESSLIPAAVFLPIL 191
Query: 410 LILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIMME 461
L L +P + L+K +++ + +D ++ ++
Sbjct: 192 LKLPLPQSARCHEARTELQK---ILSEIIIARKEEEVNKDSSTSDLLSGLLS 240
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 224 bits (573), Expect = 2e-68
Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 33/316 (10%)
Query: 13 ETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTEN 72
+ L+ K + L R DV + G +++ F + +F+
Sbjct: 126 GIVQGYLEQWGKANEVIWYPQLRRMTFDVAATLFMGEKVSQNPQLFPWFETYIQGLFS-- 183
Query: 73 NNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIM 132
L + L K +A L + + + R+Q D + I+
Sbjct: 184 --------LPIPLPNTLFGKSQ-------RARALLLAELEKIIKARQQQPPSEEDALGIL 228
Query: 133 MELK-KTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTK 191
+ + + ++ + Q L FAG +T ++ L+ L ++ I+ ++R E N +
Sbjct: 229 LAARDDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQ 288
Query: 192 AKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRP-----YQLPNTDIVVDKG 246
ELT E+ +MP LD+V++E LR+ P+ R + + P KG
Sbjct: 289 L--SQELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQGFHFP-------KG 339
Query: 247 TKMFIPLYGLHHDPEIYPNPDVFDPERFAPEN-ADNIPNYAYLPFGEGPRNCIGKRFALL 305
+ + H DP++YP+P+ FDPERF P+ A + P +A++PFG G R C+GK FA L
Sbjct: 340 WLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARL 399
Query: 306 QLKSGLAHSLSNFEWD 321
++K + F+W
Sbjct: 400 EMKLFATRLIQQFDWT 415
Score = 41.1 bits (97), Expect = 7e-04
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 340 ETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTEN 399
+ L+ K + L R DV + G +++ F + +F+
Sbjct: 126 GIVQGYLEQWGKANEVIWYPQLRRMTFDVAATLFMGEKVSQNPQLFPWFETYIQGLFS-- 183
Query: 400 NNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIM 459
L + L K +A L + + + R+Q D + I+
Sbjct: 184 --------LPIPLPNTLFGKSQ-------RARALLLAELEKIIKARQQQPPSEEDALGIL 228
Query: 460 MELKKTDPGNYLENKPIVEN 479
+ + D L + +
Sbjct: 229 LAARD-DNNQPLSLPELKDQ 247
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 216 bits (552), Expect = 8e-65
Identities = 67/341 (19%), Positives = 122/341 (35%), Gaps = 35/341 (10%)
Query: 1 MFPLMET-CGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDC 59
+ M R + +++ + + + R M + T+FG ++ +
Sbjct: 124 LTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTRRDTQKA 183
Query: 60 EFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYRE 119
+ L L I R A + + +
Sbjct: 184 HILNNLDNFKQFDKVFP---ALVAGLPIHMFRTAH-------NAREKLAESLRHENLQKR 233
Query: 120 QNNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSI 179
++ ++ I++ M L T + + +A + +SL+++ +N
Sbjct: 234 ES---ISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEA 290
Query: 180 QSKLRNEINDTKAKYGGE---------LTYESYNEMPLLDKVIKESLRMYTPLSQLERVA 230
E+ T G + L+ N++P+LD +IKESLR+ + + R A
Sbjct: 291 MKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI-RTA 349
Query: 231 GRPYQLPNTDI--VVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADN------- 281
+ L D + K + + +H DPEIYP+P F +R+ EN
Sbjct: 350 KEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCN 409
Query: 282 --IPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHSLSNFEW 320
Y Y+PFG G C G+ FA+ ++K L LS FE
Sbjct: 410 GLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFEL 450
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 186 bits (474), Expect = 4e-54
Identities = 54/342 (15%), Positives = 105/342 (30%), Gaps = 66/342 (19%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
+ LM E + +K + + E + V + E
Sbjct: 111 LAELMT------EEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGV------PLKETE 158
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ 120
+ + + + ++ A + P K R+A + + +
Sbjct: 159 VKERADDF--------IDMVDAFGAVGPRHWKG-------RRARPRAEEWIEVMIEDARA 203
Query: 121 NNIK--RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKS 178
+K ++ M + D + + A + S L FS L ++
Sbjct: 204 GLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEHPK 263
Query: 179 IQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRP----- 233
+ LR+ + ++E R Y L + +
Sbjct: 264 YKEWLRSG------------------NSREREMFVQEVRRYYPFGPFLGALVKKDFVWNN 305
Query: 234 YQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEG 293
+ KGT + + LYG +HDP ++ +PD F PERFA + +P G G
Sbjct: 306 CEFK-------KGTSVLLDLYGTNHDPRLWDHPDEFRPERFAER---EENLFDMIPQGGG 355
Query: 294 P----RNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEMFPL 331
C G+ + +K+ L + E+D + + L
Sbjct: 356 HAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSL 397
Score = 30.8 bits (70), Expect = 1.0
Identities = 17/156 (10%), Positives = 43/156 (27%), Gaps = 30/156 (19%)
Query: 326 NEMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPD 385
+ LM E + +K + + E + V +
Sbjct: 109 KRLAELMT------EEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGV------PLKE 156
Query: 386 CEFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYR 445
E + + + + ++ A + P K R+A + + +
Sbjct: 157 TEVKERADDF--------IDMVDAFGAVGPRHWKG-------RRARPRAEEWIEVMIEDA 201
Query: 446 EQNNIK--RNDFINIMMELKKTDPGNYLENKPIVEN 479
+K ++ M + D G+ L+++
Sbjct: 202 RAGLLKTTSGTALHEMAFHTQED-GSQLDSRMAAIE 236
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 184 bits (470), Expect = 8e-54
Identities = 57/332 (17%), Positives = 101/332 (30%), Gaps = 66/332 (19%)
Query: 1 MFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCE 60
ME R + D+ + ++G +FG ++
Sbjct: 106 YREAMEEEARAF---FGEWR----GEERDLDHEMLALSLRLLGRALFGKPLSP------S 152
Query: 61 FRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQ 120
+ + M +L + +F R+
Sbjct: 153 LAEHALKALDRI--MAQTRSPLALLDLAAEARF------------------------RKD 186
Query: 121 NNIKRNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQ 180
+ +++ + E ++ AG +T ++ LT+S L+ Q
Sbjct: 187 RGALYREAEALIVH--PPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQ 244
Query: 181 SKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTD 240
++ A +E+LR+Y P L R RP L +
Sbjct: 245 KRVAESEEAALA-------------------AFQEALRLYPPAWILTRRLERPLLLG--E 283
Query: 241 IVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGK 300
+ GT + + Y +P+ + F PERF E P+ Y PFG G R C+G+
Sbjct: 284 DRLPPGTTLVLSPYVTQRLH--FPDGEAFRPERFLEERG--TPSGRYFPFGLGQRLCLGR 339
Query: 301 RFALLQLKSGLAHSLSNFEWDSDHTNEMFPLM 332
FALL+ L F D + +
Sbjct: 340 DFALLEGPIVLRAFFRRFRLDPLPFPRVLAQV 371
Score = 28.7 bits (65), Expect = 4.2
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 7/58 (12%)
Query: 323 DHTNEMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINS 380
+ ME R + D+ + ++G +FG ++
Sbjct: 101 KNVRGYREAMEEEARAF---FGEWR----GEERDLDHEMLALSLRLLGRALFGKPLSP 151
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 175 bits (446), Expect = 1e-49
Identities = 49/333 (14%), Positives = 111/333 (33%), Gaps = 41/333 (12%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 81
+ E+ + ++ S +F ++ + +++ E
Sbjct: 138 TPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEE--------FR 189
Query: 82 ALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVS-YREQNNIKRNDFINIMMELKKTDP 140
L+P L + ++ A + + + ++ + ++ ++ + D
Sbjct: 190 RFDKLLPKLA-RTTVNKEEKQIASAAREKLWKWLTPSGLDRKPREQSWLGSYVKQLQ-DE 247
Query: 141 DITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTY 200
I E+ L + + + + L + +R EI K
Sbjct: 248 GIDAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEIQGGK----HLRLE 303
Query: 201 ESYNEMPLLDKVIKESLRMYTPLS---------QLERVAGRPYQLPNTDIVVDKGTKMFI 251
E P+ D V+ E+LR+ ++ G+ Y L +G ++ +
Sbjct: 304 ERQKNTPVFDSVLWETLRLTAAALITRDVTQDKKICLSNGQEYHLR-------RGDRLCV 356
Query: 252 -PLYGLHHDPEIYPNPDVFDPERFAPENAD---------NIPNYAYLPFGEGPRNCIGKR 301
P DP+I+ P++F +RF + Y +P+G C G+
Sbjct: 357 FPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPGRH 416
Query: 302 FALLQLKSGLAHSLSNFEWDSDHTNEMFPLMET 334
FA+ +K + L+ F+ + N PL++
Sbjct: 417 FAVHAIKELVFTILTRFDVELCDKNATVPLVDP 449
Score = 31.9 bits (73), Expect = 0.56
Identities = 17/207 (8%), Positives = 54/207 (26%), Gaps = 35/207 (16%)
Query: 261 EIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLAHSLSNFEW 320
+ + D +A I N + Q S
Sbjct: 75 AVLSDVASLDQTSYAQVLMKRIFNMILPSHNPESEK--KRAEMHFQGAS----------- 121
Query: 321 DSDHTNEMFPLMETCGRNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINS 380
++ M+ NL ++ + E+ + ++ S +F +
Sbjct: 122 ----LTQLSNSMQ---NNLRLLM-----TPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLT 169
Query: 381 LENPDCEFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQ 440
+ + +++ E L+P L + ++ A + + +
Sbjct: 170 VFGAENNNSAALTQIYEE--------FRRFDKLLPKLA-RTTVNKEEKQIASAAREKLWK 220
Query: 441 NVS-YREQNNIKRNDFINIMMELKKTD 466
++ + ++ ++ + +
Sbjct: 221 WLTPSGLDRKPREQSWLGSYVKQLQDE 247
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 165 bits (420), Expect = 2e-46
Identities = 44/307 (14%), Positives = 91/307 (29%), Gaps = 59/307 (19%)
Query: 25 HQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILALI 84
I + L +T + + PD E + E+ + A
Sbjct: 128 KGEIVFYDELHEPLTRAVCAWAGVPL------PDDEAGNRAGELR--------ALFDAAG 173
Query: 85 LLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFI-NIMMELKKTDPDIT 143
P L R+ + + + + R + + + + D+
Sbjct: 174 SASPRHLWSR----LARRRVDAWAKRIIEGI--RAGSIGSGSGTAAYAIAWHRDRHDDLL 227
Query: 144 EELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESY 203
+ A + + +TF + L I++ L +
Sbjct: 228 SPHVAAVELVNVLRPTVAIAVYITFVAHALQTCSGIRAALVQQ----------------- 270
Query: 204 NEMPLLDKVIKESLRMYTPLSQLERVAGRP-----YQLPNTDIVVDKGTKMFIPLYGLHH 258
+ ++E R Y + A + P +G ++ + LYG +H
Sbjct: 271 --PDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFP-------EGRQVVLDLYGSNH 321
Query: 259 DPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGP----RNCIGKRFALLQLKSGLAHS 314
D + +P F PERF + ++ ++P G G C G+ L +K
Sbjct: 322 DAATWADPQEFRPERFRAW---DEDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLL 378
Query: 315 LSNFEWD 321
++ +D
Sbjct: 379 VNAMRYD 385
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 128 bits (325), Expect = 1e-32
Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 32/315 (10%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 81
K + D K+ + ++++ +FG D +F+ + E+F+EN + +
Sbjct: 145 TYKGRPFDFKQLITNAVSNITNLIIFG---ERFTYEDTDFQHM-IELFSENVELAASASV 200
Query: 82 ALILLIPYLRKFM--SYMMLLRKAAY---FFLDVVHQNVSYREQNNIKRNDFIN---IMM 133
L P++ + L R AA F ++ + R+ + F++ M
Sbjct: 201 FLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRKPQLPQ--HFVDAYLDEM 258
Query: 134 ELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTK 191
+ K DP ++E + AG +T++ VL +++ +A +IQ +++ EI D
Sbjct: 259 DQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEI-DLI 317
Query: 192 AKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIVVD 244
G+ +++ +MP + V+ E LR PL + Y +P
Sbjct: 318 MGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLG-IFHATSEDAVVRGYSIP------- 369
Query: 245 KGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFAL 304
KGT + LY +H D + + +P+VF PERF + A +PF G R+C+G+ A
Sbjct: 370 KGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLAR 429
Query: 305 LQLKSGLAHSLSNFE 319
+++ L F
Sbjct: 430 MEMFLFFTALLQRFH 444
Score = 29.1 bits (66), Expect = 3.8
Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 408
K + D K+ + ++++ +FG D +F+ + E+F+EN + +
Sbjct: 145 TYKGRPFDFKQLITNAVSNITNLIIFG---ERFTYEDTDFQHM-IELFSENVELAASASV 200
Query: 409 ALILLIPYLRKFM--SYMMLLRKAAY---FFLDVVHQNVSYREQNNIKRNDFIN---IMM 460
L P++ + L R AA F ++ + R+ + F++ M
Sbjct: 201 FLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRKPQLPQ--HFVDAYLDEM 258
Query: 461 ELKKTDPGNYL 471
+ K DP +
Sbjct: 259 DQGKNDPSSTF 269
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 128 bits (325), Expect = 2e-32
Identities = 63/318 (19%), Positives = 119/318 (37%), Gaps = 39/318 (12%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQII- 80
+ + +++ +I FG N + F +++ ++ +QI+
Sbjct: 153 VQAGAPVTIQKEFSLLTCSIICYLTFG---NKEDTLVHAFHDCVQDLMKTWDHWSIQILD 209
Query: 81 ---LALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIM---ME 134
P L + + + ++ + D + M +
Sbjct: 210 MVPFLRFFPNPGLWRLKQAIENRDH---MVEKQLRRHKESMVAGQWR--DMTDYMLQGVG 264
Query: 135 LKKTDPD---ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDT- 190
++ + + E + F G +T+++ L++++ L + IQ +L+ E++
Sbjct: 265 RQRVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDREL 324
Query: 191 -KAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIV 242
+TY+ +PLL+ I E LR+ PL+ L RP Y +P
Sbjct: 325 GPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLA-LPHRTTRPSSIFGYDIP----- 378
Query: 243 VDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRF 302
+G + L G H D ++ P F P+RF A N + L FG G R C+G+
Sbjct: 379 --EGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPGA----NPSALAFGCGARVCLGESL 432
Query: 303 ALLQLKSGLAHSLSNFEW 320
A L+L LA L F
Sbjct: 433 ARLELFVVLARLLQAFTL 450
Score = 29.9 bits (68), Expect = 2.2
Identities = 12/128 (9%), Positives = 37/128 (28%), Gaps = 15/128 (11%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQII- 407
+ + +++ +I FG N + F +++ ++ +QI+
Sbjct: 153 VQAGAPVTIQKEFSLLTCSIICYLTFG---NKEDTLVHAFHDCVQDLMKTWDHWSIQILD 209
Query: 408 ---LALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFINIM---ME 461
P L + + + ++ + D + M +
Sbjct: 210 MVPFLRFFPNPGLWRLKQAIENRDH---MVEKQLRRHKESMVAGQWR--DMTDYMLQGVG 264
Query: 462 LKKTDPGN 469
++ + G
Sbjct: 265 RQRVEEGP 272
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 128 bits (325), Expect = 2e-32
Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 42/303 (13%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 81
QSID+ + +T+VI F S +N D E I +
Sbjct: 141 THNGQSIDISFPVFVAVTNVISLICFN---TSYKNGDPELNVIQNYN---EGIIDNLSKD 194
Query: 82 ALILLIPYLRKF-MSYMMLLRKAAYFFLDVVHQNVSYREQ----NNIKRNDFI----NIM 132
+L+ L+P+L+ F + L+ D++++ + ++ ++I + +
Sbjct: 195 SLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSIT--NMLDTLMQAK 252
Query: 133 MELKKTDPD-------ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRN 185
M + +++ I F AG +T+++V+ ++L L N ++ KL
Sbjct: 253 MNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYE 312
Query: 186 EINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPN 238
EI D + T N + LL+ I+E LR+ P+ + A + +
Sbjct: 313 EI-DQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPML-IPHKANVDSSIGEFAVD- 369
Query: 239 TDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPEN--ADNIPNYAYLPFGEGPRN 296
KGT++ I L+ LHH+ + + PD F PERF P+ +YLPFG GPR+
Sbjct: 370 ------KGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRS 423
Query: 297 CIG 299
CIG
Sbjct: 424 CIG 426
Score = 36.0 bits (84), Expect = 0.026
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 17/130 (13%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 408
QSID+ + +T+VI F S +N D E I +
Sbjct: 141 THNGQSIDISFPVFVAVTNVISLICFN---TSYKNGDPELNVIQNYN---EGIIDNLSKD 194
Query: 409 ALILLIPYLRKF-MSYMMLLRKAAYFFLDVVHQNVSYREQ----NNIKRNDFI----NIM 459
+L+ L+P+L+ F + L+ D++++ + ++ ++I + +
Sbjct: 195 SLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSIT--NMLDTLMQAK 252
Query: 460 MELKKTDPGN 469
M + G
Sbjct: 253 MNSDNGNAGP 262
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 124 bits (315), Expect = 3e-31
Identities = 64/309 (20%), Positives = 113/309 (36%), Gaps = 37/309 (11%)
Query: 19 LDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQ 78
+ D + + +VIG+ FG E + K + +
Sbjct: 153 QELMAGPGHFDPYNQVVVSVANVIGAMCFG---QHFPESSDEMLSLVKNT---HEFVETA 206
Query: 79 IILALILLIPYLRKFM-SYMMLLRKAAYFFLDVVHQNVSYREQ----NNIKRNDFIN--- 130
+ P LR + + FL + + V Q N+++ D
Sbjct: 207 SSGNPLDFFPILRYLPNPALQRFKAFNQRFLWFLQKTVQEHYQDFDKNSVR--DITGALF 264
Query: 131 IMMELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEIN 188
+ I +E I F AGFDT +T +++SL L IQ K++ E+
Sbjct: 265 KHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKEL- 323
Query: 189 DTKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDI 241
DT ++P L+ I E+ R + P + + R + +P
Sbjct: 324 DTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPFT-IPHSTTRDTTLNGFYIP---- 378
Query: 242 VVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENA---DNIPNYAYLPFGEGPRNCI 298
K +F+ + ++HDPE++ +P F PERF + + + + FG G R CI
Sbjct: 379 ---KKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCI 435
Query: 299 GKRFALLQL 307
G+ A ++
Sbjct: 436 GEVLAKWEI 444
Score = 31.4 bits (72), Expect = 0.74
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 16/134 (11%)
Query: 346 LDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQ 405
+ D + + +VIG+ FG E + K + +
Sbjct: 153 QELMAGPGHFDPYNQVVVSVANVIGAMCFG---QHFPESSDEMLSLVKNT---HEFVETA 206
Query: 406 IILALILLIPYLRKFM-SYMMLLRKAAYFFLDVVHQNVSYREQ----NNIKRNDFIN--- 457
+ P LR + + FL + + V Q N+++ D
Sbjct: 207 SSGNPLDFFPILRYLPNPALQRFKAFNQRFLWFLQKTVQEHYQDFDKNSVR--DITGALF 264
Query: 458 IMMELKKTDPGNYL 471
+ GN +
Sbjct: 265 KHSKKGPRASGNLI 278
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 124 bits (314), Expect = 4e-31
Identities = 66/316 (20%), Positives = 114/316 (36%), Gaps = 34/316 (10%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 81
N + L + +++VI S G E D F R+ ++ E +
Sbjct: 144 NHSGRPFRPNGLLDKAVSNVIASLTCG---RRFEYDDPRFLRL-LDLAQEGLKEESGFLR 199
Query: 82 ALILLIPYLRKF-MSYMMLLRKAAY---FFLDVV--HQNVSYREQNNIKRNDFIN---IM 132
++ +P L +LR +++ H+ ++ + D
Sbjct: 200 EVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRM-TWDPAQPPR--DLTEAFLAE 256
Query: 133 MELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDT 190
ME K +P+ +E + F AG T+ST L + L + + +Q +++ EI D
Sbjct: 257 MEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEI-DD 315
Query: 191 KAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIVV 243
MP VI E R PL + + R +++P
Sbjct: 316 VIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLG-VTHMTSRDIEVQGFRIP------ 368
Query: 244 DKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFA 303
KGT + L + D ++ P F PE F + A+LPF G R C+G+ A
Sbjct: 369 -KGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLA 427
Query: 304 LLQLKSGLAHSLSNFE 319
++L L +F
Sbjct: 428 RMELFLFFTSLLQHFS 443
Score = 28.3 bits (64), Expect = 6.2
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 16/128 (12%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 408
N + L + +++VI S G E D F R+ ++ E +
Sbjct: 144 NHSGRPFRPNGLLDKAVSNVIASLTCG---RRFEYDDPRFLRL-LDLAQEGLKEESGFLR 199
Query: 409 ALILLIPYLRKF-MSYMMLLRKAAY---FFLDVV--HQNVSYREQNNIKRNDFIN---IM 459
++ +P L +LR +++ H+ ++ + D
Sbjct: 200 EVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRM-TWDPAQPPR--DLTEAFLAE 256
Query: 460 MELKKTDP 467
ME K +P
Sbjct: 257 MEKAKGNP 264
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 123 bits (311), Expect = 1e-30
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 42/312 (13%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 81
+ +D + + +V+ + FG + D EFR + R
Sbjct: 145 SADGAFLDPRPLTVVAVANVMSAVCFG---CRYSHDDPEFRELLSHN---EEFGRTVGAG 198
Query: 82 ALILLIPYLRK--------FMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN--- 130
+L+ ++P+L+ F + L R + F LD ++ R D ++
Sbjct: 199 SLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPR-DMMDAFI 257
Query: 131 IMMELKKTDPD------ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+ E K + E + A F A DT ST L + L + +Q++++
Sbjct: 258 LSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQ 317
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLP 237
E+ D +P + + E++R + P++ + Y +P
Sbjct: 318 AEL-DQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVT-IPHATTANTSVLGYHIP 375
Query: 238 NTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPEN--ADNIPNYAYLPFGEGPR 295
K T +F+ + ++HDP +PNP+ FDP RF ++ + + F G R
Sbjct: 376 -------KDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKR 428
Query: 296 NCIGKRFALLQL 307
CIG+ + +QL
Sbjct: 429 RCIGEELSKMQL 440
Score = 32.6 bits (75), Expect = 0.29
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 15/116 (12%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIIL 408
+ +D + + +V+ + FG + D EFR + R
Sbjct: 145 SADGAFLDPRPLTVVAVANVMSAVCFG---CRYSHDDPEFRELLSHN---EEFGRTVGAG 198
Query: 409 ALILLIPYLRK--------FMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFI 456
+L+ ++P+L+ F + L R + F LD ++ R D +
Sbjct: 199 SLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPR-DMM 253
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 121 bits (307), Expect = 3e-30
Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 36/317 (11%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 78
+ID +L R +++VI S VFG + + D EF + + +F + Q
Sbjct: 140 GTGGANIDPTFFLSRTVSNVISSIVFG---DRFDYKDKEFLSLLRMMLGIFQFTSTSTGQ 196
Query: 79 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 131
+ ++ +L ++ + L F V N + N+ + DFI+ I
Sbjct: 197 LYEMFSSVMKHLPGPQQQAFQLLQGLED---FIAKKVEHNQRTLDPNSPR--DFIDSFLI 251
Query: 132 MMELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEIND 189
M+ ++ +P+ + + F G +T ST L + L K+ +++K+ EI D
Sbjct: 252 RMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEI-D 310
Query: 190 TKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIV 242
+ +E +MP ++ VI E R P+S L R + + LP
Sbjct: 311 RVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMS-LARRVKKDTKFRDFFLP----- 364
Query: 243 VDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRF 302
KGT+++ L + DP + NP F+P+ F E + A++PF G RNC G+
Sbjct: 365 --KGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGL 422
Query: 303 ALLQLKSGLAHSLSNFE 319
A ++L + NF
Sbjct: 423 ARMELFLFFTTVMQNFR 439
Score = 29.8 bits (68), Expect = 2.3
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 405
+ID +L R +++VI S VFG + + D EF + + +F + Q
Sbjct: 140 GTGGANIDPTFFLSRTVSNVISSIVFG---DRFDYKDKEFLSLLRMMLGIFQFTSTSTGQ 196
Query: 406 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 458
+ ++ +L ++ + L F V N + N+ + DFI+ I
Sbjct: 197 LYEMFSSVMKHLPGPQQQAFQLLQGLED---FIAKKVEHNQRTLDPNSPR--DFIDSFLI 251
Query: 459 MMELKKTDPGNYLENKPIV 477
M+ ++ +P K +V
Sbjct: 252 RMQEEEKNPNTEFYLKNLV 270
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 120 bits (304), Expect = 8e-30
Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 36/317 (11%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 78
+ Q D +G +VI +F + D +F R+ E F + LQ
Sbjct: 139 KTQGQPFDPTFLIGCAPCNVIADILFR---KHFDYNDEKFLRLMYLFNENFHLLSTPWLQ 195
Query: 79 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 131
+ + YL RK + + +++ + + V ++ + N + D + +
Sbjct: 196 LYNNFPSFLHYLPGSHRKVIKNVAEVKE---YVSERVKEHHQSLDPNCPR--DLTDCLLV 250
Query: 132 MMELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEIND 189
ME +K + T + IT FFAG +T+ST L + L L K I+ KL EI D
Sbjct: 251 EMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEI-D 309
Query: 190 TKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIV 242
+ EMP +D V+ E R T P + L A R Y +P
Sbjct: 310 RVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSN-LPHEATRDTIFRGYLIP----- 363
Query: 243 VDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRF 302
KGT + L + +D + +P+P+ F PE F EN + + PF G R C G+
Sbjct: 364 --KGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGL 421
Query: 303 ALLQLKSGLAHSLSNFE 319
A ++L L L +F
Sbjct: 422 ARMELFLLLCAILQHFN 438
Score = 30.2 bits (69), Expect = 1.6
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 405
+ Q D +G +VI +F + D +F R+ E F + LQ
Sbjct: 139 KTQGQPFDPTFLIGCAPCNVIADILFR---KHFDYNDEKFLRLMYLFNENFHLLSTPWLQ 195
Query: 406 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 458
+ + YL RK + + +++ + + V ++ + N + D + +
Sbjct: 196 LYNNFPSFLHYLPGSHRKVIKNVAEVKE---YVSERVKEHHQSLDPNCPR--DLTDCLLV 250
Query: 459 MMELKKTDPGNYLENK 474
ME +K
Sbjct: 251 EMEKEKHSAERLYTMD 266
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 120 bits (303), Expect = 1e-29
Identities = 80/334 (23%), Positives = 134/334 (40%), Gaps = 36/334 (10%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 78
K D LG +VI S +F + D +F + + E ++ +Q
Sbjct: 141 KTKASPCDPTFILGCAPCNVICSIIFH---KRFDYKDQQFLNLMEKLNENIKILSSPWIQ 197
Query: 79 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 131
I +I Y K + + ++ + L+ V ++ + NN + DFI+ +
Sbjct: 198 ICNNFSPIIDYFPGTHNKLLKNVAFMKS---YILEKVKEHQESMDMNNPQ--DFIDCFLM 252
Query: 132 MMELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEIND 189
ME +K + T E + F AG +T+ST L ++L L K+ + +K++ EI +
Sbjct: 253 KMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEI-E 311
Query: 190 TKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIV 242
+ + MP D V+ E R P S L Y +P
Sbjct: 312 RVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTS-LPHAVTCDIKFRNYLIP----- 365
Query: 243 VDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRF 302
KGT + I L + HD + +PNP++FDP F E + + ++PF G R C+G+
Sbjct: 366 --KGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEAL 423
Query: 303 ALLQLKSGLAHSLSNFEWDSDHTNEMFPLMETCG 336
A ++L L L NF S +
Sbjct: 424 AGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVN 457
Score = 28.3 bits (64), Expect = 6.9
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 405
K D LG +VI S +F + D +F + + E ++ +Q
Sbjct: 141 KTKASPCDPTFILGCAPCNVICSIIFH---KRFDYKDQQFLNLMEKLNENIKILSSPWIQ 197
Query: 406 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 458
I +I Y K + + ++ + L+ V ++ + NN + DFI+ +
Sbjct: 198 ICNNFSPIIDYFPGTHNKLLKNVAFMKS---YILEKVKEHQESMDMNNPQ--DFIDCFLM 252
Query: 459 MMELKKTDPGNYL 471
ME +K + +
Sbjct: 253 KMEKEKHNQPSEF 265
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 117 bits (296), Expect = 9e-29
Identities = 69/317 (21%), Positives = 121/317 (38%), Gaps = 36/317 (11%)
Query: 22 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 78
K +D +++I S VFG + D F R+ + F+ ++ Q
Sbjct: 140 KSKGALLDNTLLFHSITSNIICSIVFG---KRFDYKDPVFLRLLDLFFQSFSLISSFSSQ 196
Query: 79 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 131
+ + + R+ + + F V ++ + + +N + DFI+ +
Sbjct: 197 VFELFSGFLKHFPGTHRQIYRNLQEINT---FIGQSVEKHRATLDPSNPR--DFIDVYLL 251
Query: 132 MMELKKTDPD--ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEIND 189
ME K+DP + + FFAG +T+ST L + + K + +++ EI +
Sbjct: 252 RMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEI-E 310
Query: 190 TKAKYGGELTYESYNEMPLLDKVIKESLRMYT--PLSQLERVAGRP-----YQLPNTDIV 242
+ +MP D VI E R+ P + + Y +P
Sbjct: 311 QVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFG-VPHTVTKDTQFRGYVIP----- 364
Query: 243 VDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRF 302
K T++F L HDP + P+ F+P F N N ++PF G R C+G+
Sbjct: 365 --KNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGI 422
Query: 303 ALLQLKSGLAHSLSNFE 319
A +L L NF
Sbjct: 423 ARTELFLFFTTILQNFS 439
Score = 27.9 bits (63), Expect = 9.7
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 349 NKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISK---EMFTENNNMRLQ 405
K +D +++I S VFG + D F R+ + F+ ++ Q
Sbjct: 140 KSKGALLDNTLLFHSITSNIICSIVFG---KRFDYKDPVFLRLLDLFFQSFSLISSFSSQ 196
Query: 406 IILALILLIPYL----RKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN---I 458
+ + + R+ + + F V ++ + + +N + DFI+ +
Sbjct: 197 VFELFSGFLKHFPGTHRQIYRNLQEINT---FIGQSVEKHRATLDPSNPR--DFIDVYLL 251
Query: 459 MMELKKTDP 467
ME K+DP
Sbjct: 252 RMEKDKSDP 260
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 72.3 bits (178), Expect = 7e-14
Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 34/189 (17%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
++T E L G DT+ +T + L KN +KL+
Sbjct: 247 TRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKAN------------ 294
Query: 199 TYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYG-LH 257
L++ ++ E +R TPL+ + R A +L I KG K+ + Y +
Sbjct: 295 -------PALVETMVPEIIRWQTPLAHMRRTAIADSELGGKTI--RKGDKVVM-WYYSGN 344
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLK---SGLAHS 314
D E+ P+ F +R P +L FG G C+G R A +QL+ +
Sbjct: 345 RDDEVIDRPEEFIIDRPRPRQ--------HLSFGFGIHRCVGNRLAEMQLRILWEEILTR 396
Query: 315 LSNFEWDSD 323
S E ++
Sbjct: 397 FSRIEVMAE 405
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 71.9 bits (177), Expect = 9e-14
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 30/175 (17%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+ITE A +F+ G ++ + A+ + + RN+
Sbjct: 215 AGEITESEAIATILVFYAVGHMAIGYLIASGIELFARRPEVFTAFRND------------ 262
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLH 257
+I E +RM P R ++ ++++ G+ + + +
Sbjct: 263 --------ESARAAIINEMVRMDPPQLSFLRFPTEDVEI--GGVLIEAGSPIRFMIGAAN 312
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
DPE++ +PDVFD R + L FG GP +C G+ + + + A
Sbjct: 313 RDPEVFDDPDVFDHTRPPAAS-------RNLSFGLGPHSCAGQIISRAEATTVFA 360
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 72.0 bits (177), Expect = 1e-13
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
++D ++++ K I ++ I A AG DT+S+ ++ L++N + +
Sbjct: 235 KDDVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQLALAK 294
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVD 244
++ L+ +++ E++R P+ R A ++ +I
Sbjct: 295 SD-------------------PALIPRLVDEAVRWTAPVKSFMRTALADTEVRGQNI--K 333
Query: 245 KGTKMFIPLYG-LHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFA 303
+G ++ + Y + D E++ NPD FD RF PN +L FG G C+G+ A
Sbjct: 334 RGDRIML-SYPSANRDEEVFSNPDEFDITRF--------PN-RHLGFGWGAHMCLGQHLA 383
Query: 304 LLQLK---SGLAHSLSNFEWDSD 323
L++K L L + E
Sbjct: 384 KLEMKIFFEELLPKLKSVELSGP 406
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 71.6 bits (176), Expect = 1e-13
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 30/171 (17%)
Query: 138 TDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGE 197
TD D+T + + C G +T+ +T +++ LA + + LR+
Sbjct: 235 TDDDLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRDG----------- 283
Query: 198 LTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLH 257
+D V++E LR +P + RV + D+ GT + L +
Sbjct: 284 --------SADVDTVVEEVLRWTSPAMHVLRVTTADVTINGRDL--PSGTPVVAWLPAAN 333
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLK 308
DP + +PD F P R PN ++ FG G +C+G A ++L
Sbjct: 334 RDPAEFDDPDTFLPGRK--------PN-RHITFGHGMHHCLGSALARIELS 375
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 70.0 bits (172), Expect = 4e-13
Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 31/187 (16%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+D I +M+ + I + L G DT L+F + LA++ + ++LR
Sbjct: 223 GDDLITLMVNSEINGERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELR 282
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVD 244
++ L + +E R P+ R+ + + +
Sbjct: 283 SD-------------------PLKLMRGAEEMFR-RFPVVSEARMVAKDQEYKGVFL--K 320
Query: 245 KGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFAL 304
+G + +P D P P D R ++ FG GP C G A
Sbjct: 321 RGDMILLPTALHGLDDAANPEPWKLDFSRR--------SI-SHSTFGGGPHRCAGMHLAR 371
Query: 305 LQLKSGL 311
+++ L
Sbjct: 372 MEVIVTL 378
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 70.0 bits (172), Expect = 4e-13
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 33/170 (19%)
Query: 144 EELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESY 203
+E+I A C L AG +T+ ++ + + + + L +
Sbjct: 244 DEII-ATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAAD----------------- 285
Query: 204 NEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEI 262
VI+E++R P+ + R AG + V KG M + L H DP I
Sbjct: 286 ---GSRASAVIEETMRYDPPVQLVSRYAGDDLTI--GTHTVPKGDTMLLLLAAAHRDPTI 340
Query: 263 YPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
PD FDP+R I + FG+G C+G A L+ L
Sbjct: 341 VGAPDRFDPDR------AQIRHLG---FGKGAHFCLGAPLARLEATVALP 381
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 69.6 bits (171), Expect = 5e-13
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 33/169 (19%)
Query: 144 EELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESY 203
EE + C L AG +T+ +++ S+ L ++ KLR
Sbjct: 222 EEAA-STCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLREN----------------- 263
Query: 204 NEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEI 262
P L+ ++E LR +P RVA + + + +G ++++ L + DP I
Sbjct: 264 ---PDLIGTAVEECLRYESPTQMTARVASEDIDI--CGVTIRQGEQVYLLLGAANRDPSI 318
Query: 263 YPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGL 311
+ NPDVFD R + L FG G C+G A L+ + +
Sbjct: 319 FTNPDVFDITRSPNPH---------LSFGHGHHVCLGSSLARLEAQIAI 358
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 69.7 bits (171), Expect = 6e-13
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+D I+I+ + ++++ I A A + + L +Y L N + +
Sbjct: 237 GSDLISILCTSEYEGMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVL 296
Query: 185 NEINDTKAKYGGELTYESYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVV 243
+ L+ + I E+LR P+ + R + + +I
Sbjct: 297 AD--------------------RSLVPRAIAETLRYKPPVQLIPRQLSQDTVVGGMEI-- 334
Query: 244 DKGTKMFIPLYGLHHDPEIYPNPDVFDPER--FAPENADNIPNYAYLPFGEGPRNCIGKR 301
K T +F + + DPE + PDVF+ R ++A + +L FG G NC+G
Sbjct: 335 KKDTIVFCMIGAANRDPEAFEQPDVFNIHREDLGIKSAFSGAA-RHLAFGSGIHNCVGTA 393
Query: 302 FALLQLKSGL 311
FA +++
Sbjct: 394 FAKNEIEIVA 403
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 69.3 bits (170), Expect = 7e-13
Identities = 38/188 (20%), Positives = 61/188 (32%), Gaps = 33/188 (17%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
D I+I+ + IT + C L G DT L+FS+ LAK+ + +L
Sbjct: 217 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELI 276
Query: 185 NEINDTKAKYGGELTYESYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVV 243
P + +E LR L R+ Y+ +
Sbjct: 277 ER--------------------PERIPAACEELLR-RFSLVADGRILTSDYEFHGVQL-- 313
Query: 244 DKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFA 303
KG ++ +P D P D R ++ FG G C+G+ A
Sbjct: 314 KKGDQILLPQMLSGLDERENACPMHVDFSRQ--------KV-SHTTFGHGSHLCLGQHLA 364
Query: 304 LLQLKSGL 311
++ L
Sbjct: 365 RREIIVTL 372
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 69.2 bits (170), Expect = 7e-13
Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 33/184 (17%)
Query: 143 TEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYES 202
+++ + + L G +T+ L+ +L +N+ L+ +
Sbjct: 216 SDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRD---------------- 259
Query: 203 YNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEI 262
LL I+E LR P+ + RV + T + G KM + + D +
Sbjct: 260 ---PSLLPGAIEEMLRWTAPVKNMCRVLTADTEFHGTAL--CAGEKMMLLFESANFDEAV 314
Query: 263 YPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLK---SGLAHSLSNFE 319
+ P+ FD +R PN ++L FG G C+G + A L+L + L +
Sbjct: 315 FCEPEKFDVQRN--------PN-SHLAFGFGTHFCLGNQLARLELSLMTERVLRRLPDLR 365
Query: 320 WDSD 323
+D
Sbjct: 366 LVAD 369
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 68.9 bits (169), Expect = 1e-12
Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 33/202 (16%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+D ++ +++ + AG DT+S + LA++ + ++++
Sbjct: 257 TDDVATVIANAVVDGEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARDPDLFARVK 316
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVD 244
+ LL +++E++R TP+ R A +L I
Sbjct: 317 AD-------------------RNLLPGIVEEAIRWTTPVQHFMRTAATDTELCGQKI--A 355
Query: 245 KGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFAL 304
G + + +HDP +P P FDP R N +L FG G C+G A
Sbjct: 356 AGDWLMLNYVAANHDPAQFPEPRKFDPTRP--------AN-RHLAFGAGSHQCLGLHLAR 406
Query: 305 LQLK---SGLAHSLSNFEWDSD 323
L+++ L + + E +
Sbjct: 407 LEMRVLLDVLLDRVDSLELAGE 428
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 68.5 bits (168), Expect = 1e-12
Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 33/188 (17%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
D I ++ ++ + ++ L G DT L F + L+++ +++R
Sbjct: 224 GTDLITRILNVEIDGKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMR 283
Query: 185 NEINDTKAKYGGELTYESYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVV 243
E P L + ++E R + R + T +
Sbjct: 284 RE--------------------PLKLQRGVEELFR-RFAVVSDARYVVSDMEFHGTML-- 320
Query: 244 DKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFA 303
+G + +P D + +P D R ++ + F +GP C G A
Sbjct: 321 KEGDLILLPTALHGLDDRHHDDPMTVDLSR------RDVTHST---FAQGPHRCAGMHLA 371
Query: 304 LLQLKSGL 311
L++ L
Sbjct: 372 RLEVTVML 379
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 68.0 bits (167), Expect = 2e-12
Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 33/170 (19%)
Query: 144 EELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESY 203
E++ + F F G +T ++ + ++ L + LR
Sbjct: 221 NEIV-STVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRR----------------- 262
Query: 204 NEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEI 262
P LL + ++E LR + R +L + + + + + DP
Sbjct: 263 ---PDLLAQAVEECLRYDPSVQSNTRQLDVDVEL--RGRRLRRDDVVVVLAGAANRDPRR 317
Query: 263 YPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
Y PD FD ER + + FG G R C+G A QL++ +A
Sbjct: 318 YDRPDDFDIERDPVPS---------MSFGAGMRYCLGSYLARTQLRAAVA 358
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 67.2 bits (165), Expect = 2e-12
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 32/168 (19%)
Query: 141 DITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTY 200
++++ L AG +T++ +++ S+ + + ++R E
Sbjct: 193 NLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNL-WQRIREE-------------- 237
Query: 201 ESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDP 260
L K I+E+LR P+ + R +L + I ++G + + + + D
Sbjct: 238 ------NLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTI--EEGEYVRVWIASANRDE 289
Query: 261 EIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLK 308
E++ + + F P+R + P+ L FG G C+G A L+ +
Sbjct: 290 EVFHDGEKFIPDR------NPNPH---LSFGSGIHLCLGAPLARLEAR 328
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 67.7 bits (166), Expect = 2e-12
Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 28/184 (15%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+D + ++E + ++ I + L AG +T+ +T + L++ + +
Sbjct: 242 HDDLTSSLVEAEVDGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWW 301
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVD 244
++ + L ++E +R +P+ + R + +L T +
Sbjct: 302 SDFDG------------------LAPTAVEEIVRWASPVVYMRRTLTQDIELRGTKM--A 341
Query: 245 KGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFAL 304
G K+ + + D + +P FD R N P+ + G G C+G A
Sbjct: 342 AGDKVSLWYCSANRDESKFADPWTFDLAR-----NPN-PHLGF--GGGGAHFCLGANLAR 393
Query: 305 LQLK 308
+++
Sbjct: 394 REIR 397
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 67.3 bits (165), Expect = 3e-12
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 31/159 (19%)
Query: 142 ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYE 201
T + C F G DT + ++ LA++ Q LR
Sbjct: 219 WTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLRER--------------- 263
Query: 202 SYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDP 260
P L+ E +R P + R A + + KG +++P + DP
Sbjct: 264 -----PDLIPAAADELMR-RYPTVAVSRNAVADVDA--DGVTIRKGDLVYLPSVLHNLDP 315
Query: 261 EIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIG 299
+ P+ +R + G G C+G
Sbjct: 316 ASFEAPEEVRFDRGLAPI-------RHTTMGVGAHRCVG 347
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 66.9 bits (164), Expect = 4e-12
Identities = 33/202 (16%), Positives = 73/202 (36%), Gaps = 34/202 (16%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+D + +++ ++++ + AG +T+ +T + A++ +
Sbjct: 236 ADDIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELYK 295
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVD 244
+ E +R TP++ +R A R Y+L I
Sbjct: 296 KV---------------------RPETAADEIVRWATPVTAFQRTALRDYELSGVQI--K 332
Query: 245 KGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFAL 304
KG ++ + + D E++ +P F+ R N P+ + G G CIG A
Sbjct: 333 KGQRVVMFYRSANFDEEVFQDPFTFNILR-----NPN-PHVGF--GGTGAHYCIGANLAR 384
Query: 305 LQLK---SGLAHSLSNFEWDSD 323
+ + + +A + + + S
Sbjct: 385 MTINLIFNAVADHMPDLKPISA 406
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 65.3 bits (160), Expect = 1e-11
Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 32/175 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+ D+ + + + AG +T+ + L ++ L +
Sbjct: 225 EGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHPEQIDVLLRD------------ 272
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLH 257
P + V++E LR + + R+A ++ + G + + + ++
Sbjct: 273 --------PGAVSGVVEELLRFTSVSDHIVRMAKEDIEVG--GATIKAGDAVLVSITLMN 322
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
D + Y NPD+FD R ++ FG G C+G+ A +L+ L
Sbjct: 323 RDAKAYENPDIFDARR---------NARHHVGFGHGIHQCLGQNLARAELEIALG 368
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 65.0 bits (159), Expect = 1e-11
Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 30/170 (17%)
Query: 143 TEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYES 202
+E AG T++ +L + L ++ + +
Sbjct: 227 DDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAED---------------- 270
Query: 203 YNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPE 261
P + +++E LR P Q++R + ++ I + + + D +
Sbjct: 271 ----PGRIPAIVEEVLRYRPPFPQMQRTTTKATEVAGVPI--PADVMVNTWVLSANRDSD 324
Query: 262 IYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGL 311
+ +PD FDP R + L FG G C+G A L+ + L
Sbjct: 325 AHDDPDRFDPSR----KSGGAAQ---LSFGHGVHFCLGAPLARLENRVAL 367
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 65.4 bits (160), Expect = 1e-11
Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 33/170 (19%)
Query: 143 TEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYES 202
+ ++ C AG +T++ L ++ L ++ + +LR
Sbjct: 241 VDGIV-GTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTT---------------- 283
Query: 203 YNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPE 261
P ++E +R P+ + R A +L D + +G+++ L + DP
Sbjct: 284 ----PESTPAAVEELMRYDPPVQAVTRWAYEDIRL--GDHDIPRGSRVVALLGSANRDPA 337
Query: 262 IYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGL 311
+P+PDV D R A + FG G C+G A + + GL
Sbjct: 338 RFPDPDVLDVHRAAERQ---------VGFGLGIHYCLGATLARAEAEIGL 378
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 64.9 bits (159), Expect = 2e-11
Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 32/175 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
D ++ + +T+ + AGF+ S +++ Y L + + +R +
Sbjct: 223 DGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRD------------ 270
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLH 257
P L ++E LR P R A ++ + + + + + + +
Sbjct: 271 --------PSALPNAVEEILRYIAPPETTTRFAAEEVEI--GGVAIPQYSTVLVANGAAN 320
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
DP+ +P+P FD R + L FG+G C+G+ A L+ + L
Sbjct: 321 RDPKQFPDPHRFDVTRDTRGH---------LSFGQGIHFCMGRPLAKLEGEVALR 366
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 65.0 bits (159), Expect = 2e-11
Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 34/172 (19%)
Query: 143 TEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYES 202
T+EL+ A AG DT+ ++ F++ L ++ ++ E
Sbjct: 241 TKELV-ALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVKAE---------------- 283
Query: 203 YNEMP-LLDKVIKESLRMYTPL-SQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDP 260
P L+ + E LR L R A + + + KG +F+ + D
Sbjct: 284 ----PGLMRNALDEVLRFDNILRIGTVRFARQDLEY--CGASIKKGEMVFLLIPSALRDG 337
Query: 261 EIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
++ PDVFD R D + A +G GP C G A L+ + +
Sbjct: 338 TVFSRPDVFDVRR------DTSASLA---YGRGPHVCPGVSLARLEAEIAVG 380
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 65.0 bits (159), Expect = 2e-11
Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 46/201 (22%)
Query: 127 DFINIMMELKKTDPDITEELITAQ--------------CFLFFFAGFDTSSTVLTFSLYE 172
++ + P I A AG DT+ + ++Y
Sbjct: 207 AYVAEQCQRPNLAPGGFGACIHAFSDTGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYC 266
Query: 173 LAKNKSIQSKLRNEINDTKAKYGGELTYESYNEMP-LLDKVIKESLRMYTPLSQLERVAG 231
LA+ ++LR + P L +E++R +P+ R
Sbjct: 267 LARFPDEFARLRAD--------------------PSLARNAFEEAVRFESPVQTFFRTTT 306
Query: 232 RPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFG 291
R +L + +G K+ + L + DP + +PD +D R + + FG
Sbjct: 307 RDVELA--GATIGEGEKVLMFLGSANRDPRRWDDPDRYDITR------KTSGH---VGFG 355
Query: 292 EGPRNCIGKRFALLQLKSGLA 312
G C+G+ A L+ + LA
Sbjct: 356 SGVHMCVGQLVARLEGEVVLA 376
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 64.2 bits (157), Expect = 3e-11
Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 49/199 (24%)
Query: 127 DFINIMMELKKTDP--DITEELITAQ--------------CFLFFFAGFDTSSTVLTFSL 170
++ ++T+P DI +I ++ + G D ++ L+
Sbjct: 186 AHARTLIAERRTNPGNDIMSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTARFLSSVF 245
Query: 171 YELAKNKSIQSKLRNEINDTKAKYGGELTYESYNEMP-LLDKVIKESLRMYTPLSQLERV 229
+ LA + ++ +L P L+ + E LR Y P + + R+
Sbjct: 246 WRLAWDIELRRRLIAH--------------------PELIPNAVDELLRFYGP-AMVGRL 284
Query: 230 AGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLP 289
+ + + + G + D + +PD ER + L
Sbjct: 285 VTQEVTVGDITM--KPGQTAMLWFPIASRDRSAFDSPDNIVIER------TPNRH---LS 333
Query: 290 FGEGPRNCIGKRFALLQLK 308
G G C+G ++ +
Sbjct: 334 LGHGIHRCLGAHLIRVEAR 352
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 63.8 bits (156), Expect = 4e-11
Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 33/173 (19%)
Query: 142 ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYE 201
+++E + A L AG +T+ ++ + L + + L +
Sbjct: 221 LSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAED--------------- 265
Query: 202 SYNEMP-LLDKVIKESLRMYTPLSQL-ERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHD 259
P L+ ++E LR +P+SQ R + + + G + + L + D
Sbjct: 266 -----PSLISSAVEEFLRFDSPVSQAPIRFTAEDVTY--SGVTIPAGEMVMLGLAAANRD 318
Query: 260 PEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ P PD D R A + FG G C+G + A L+ + +
Sbjct: 319 ADWMPEPDRLDITRDASGG---------VFFGHGIHFCLGAQLARLEGRVAIG 362
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 63.4 bits (155), Expect = 5e-11
Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 33/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
D T+E + C AG D S ++ + + ++ R +
Sbjct: 218 GDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGD------------ 265
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
+ + E +R T R+A L + KG + L
Sbjct: 266 --------EQSAQRAVDELIRYLTVPYSPTPRIAREDLTL--AGQEIKKGDSVICSLPAA 315
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ DP + P+ D D R + + FG G +C+G A L+L++
Sbjct: 316 NRDPALAPDVDRLDVTREPIPH---------VAFGHGVHHCLGAALARLELRTVFT 362
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 63.0 bits (154), Expect = 6e-11
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+++EL FF AG ++ + LT +L L + +++ L +
Sbjct: 215 YSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLHEK------------ 262
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P L+ ++E LR+ + L R+A Q+ D++V KG + + L G
Sbjct: 263 --------PELIPAGVEELLRINLSFADGLPRLATADIQV--GDVLVRKGELVLVLLEGA 312
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ DPE +PNP + +R P ++L FG G C G + G+
Sbjct: 313 NFDPEHFPNPGSIELDRPNPT--------SHLAFGRGQHFCPGSALGRRHAQIGIE 360
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 63.0 bits (154), Expect = 7e-11
Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 31/176 (17%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+I + FL AG T ++ + LA++ ++L+
Sbjct: 222 PGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLKAN------------ 269
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P L + ++E R +T + ++R A + D +V +
Sbjct: 270 --------PSLAPQFVEELCRYHTASALAIKRTAKEDVMIG--DKLVRANEGIIASNQSA 319
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ D E++ NPD F+ R P L FG G CI + A +L + +
Sbjct: 320 NRDEEVFENPDEFNMNRKWPPQ-------DPLGFGFGDHRCIAEHLAKAELTTVFS 368
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 62.6 bits (153), Expect = 8e-11
Identities = 35/188 (18%), Positives = 73/188 (38%), Gaps = 44/188 (23%)
Query: 132 MMELKKTDP--DITEELITAQ---------CFLFFFAGFDTSSTVLTFSLYELAKNKSIQ 180
++ +K D+T ++ + L AG +T++ ++ ++ + S
Sbjct: 174 ELDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWD 233
Query: 181 SKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTD 240
+R + L ++E+LR P+ + RV ++ +
Sbjct: 234 -YVREK--------------------GALK-AVEEALRFSPPVMRTIRVTKEKVKIRDQV 271
Query: 241 IVVDKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGK 300
I D+G + + + + D E++ +PD F P+R P+ L FG G C+G
Sbjct: 272 I--DEGELVRVWIASANRDEEVFKDPDSFIPDR------TPNPH---LSFGSGIHLCLGA 320
Query: 301 RFALLQLK 308
A L+ +
Sbjct: 321 PLARLEAR 328
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 62.4 bits (152), Expect = 9e-11
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 32/163 (19%)
Query: 151 CFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESYNEMP-LL 209
FAG + ++ + ++ ++ + ++ ++ P
Sbjct: 216 ALRALFAGAEMTANTVVDAVLAVSAEPGLAERIADD--------------------PAAA 255
Query: 210 DKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIYPNPDVF 269
+ + E LR++ L R A +L + V+ +G ++ + + + DPE++ PD
Sbjct: 256 QRTVAEVLRLHPALHLERRTATAEVRL--GEHVIGEGEEVVVVVAAANRDPEVFAEPDRL 313
Query: 270 DPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
D +R P+ + + L
Sbjct: 314 DVDR---------PDADRALSAHRGHPGRLEELVTALATAALR 347
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 61.9 bits (151), Expect = 2e-10
Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 33/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+ + + + FL AG +T++ +++ + L + + ++
Sbjct: 227 EGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVVKAN------------ 274
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P ++E LR +T R+A ++ + + G + + +
Sbjct: 275 --------PGRTPMAVEELLRYFTIADGVTSRLATEDVEIG--GVSIKAGEGVIVSMLSA 324
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ DP ++ +P V D ER A + L FG GP C+G+ A ++L+
Sbjct: 325 NWDPAVFKDPAVLDVERGARHH---------LAFGFGPHQCLGQNLARMELQIVFD 371
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 61.4 bits (150), Expect = 2e-10
Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 35/188 (18%)
Query: 125 RNDFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLR 184
+ IN++ + +T + L G +T++ ++ + + +N I
Sbjct: 156 SHGIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDENPDIIDDAL 215
Query: 185 NEINDTKAKYGGELTYESYNEMPLLDKVIKESLRMYTPLSQL-ERVAGRPYQLPNTDIVV 243
++E+LR Y+P+ L R A + N I
Sbjct: 216 KNR----------------------SGFVEETLRYYSPIQFLPHRFAAEDSYINNKKI-- 251
Query: 244 DKGTKMFIPLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFA 303
KG ++ + L + D + PD+F R +L FG G C+G A
Sbjct: 252 KKGDQVIVYLGSANRDETFFDEPDLFKIGR------RE----MHLAFGIGIHMCLGAPLA 301
Query: 304 LLQLKSGL 311
L+ L
Sbjct: 302 RLEASIAL 309
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 61.1 bits (149), Expect = 3e-10
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 33/168 (19%)
Query: 143 TEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYES 202
I A F G DT + +L S+ L + + L ++
Sbjct: 236 GTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLLDD---------------- 279
Query: 203 YNEMP-LLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPE 261
P + ++E LR+ +P+ L R R + +T I G ++ + + D
Sbjct: 280 ----PEGIPDAVEELLRLTSPVQGLARTTTRDVTIGDTTI--PAGRRVLLLYGSANRDER 333
Query: 262 IY-PNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLK 308
Y P+ D R L F G +C+G A +Q +
Sbjct: 334 QYGPDAAELDVTR------CPRNI---LTFSHGAHHCLGAAAARMQCR 372
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 61.1 bits (149), Expect = 3e-10
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 34/177 (19%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
++E+ + AG+++++T + +Y L ++ +L +
Sbjct: 236 QDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRPELRRQLLDR------------ 283
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ--LERVAGRPYQLPNTDIVVDKGTKMFIPLYG 255
P L+ ++E R R A L I G +
Sbjct: 284 --------PELIPSAVEELTRWVPLGVGTAFPRYAVEDVTLRGVTI--RAGEPVLASTGA 333
Query: 256 LHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ D +P+ D D +R ++ L FG G +C+G A ++L+ L
Sbjct: 334 ANRDQAQFPDADRIDVDRTPNQH---------LGFGHGVHHCLGAPLARVELQVALE 381
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 61.1 bits (149), Expect = 3e-10
Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 33/173 (19%)
Query: 142 ITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYE 201
+T E + + AG +T+ ++ +Y L + + LR +
Sbjct: 248 LTSEELLGMAHILLVAGHETTVNLIANGMYALLSHPDQLAALRAD--------------- 292
Query: 202 SYNEMP-LLDKVIKESLRMYTPLSQLE-RVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHD 259
LLD ++E LR P+ R P L V+ G + + L H
Sbjct: 293 -----MTLLDGAVEEMLRYEGPVESATYRFPVEPVDL--DGTVIPAGDTVLVVLADAHRT 345
Query: 260 PEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
PE +P+P FD R + L FG G CIG A L+ + +
Sbjct: 346 PERFPDPHRFDIRRDTAGH---------LAFGHGIHFCIGAPLARLEARIAVR 389
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 61.1 bits (149), Expect = 3e-10
Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 33/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+ +I E + + L AG +T++++ + S+ L + + LR +
Sbjct: 226 NGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPEQYAALRAD------------ 273
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
L+ ++E LR RVA ++ ++ G + +
Sbjct: 274 --------RSLVPGAVEELLRYLAIADIAGGRVATADIEVE--GQLIRAGEGVIVVNSIA 323
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ D +Y +PD D R +L FG G C+G+ A L+L+ L
Sbjct: 324 NRDGTVYEDPDALDIHR---------SARHHLAFGFGVHQCLGQNLARLELEVILN 370
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 61.1 bits (149), Expect = 3e-10
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
++T E + + + AG +T+++++ S L + ++LR +
Sbjct: 231 PGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRPELPAELRKD------------ 278
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P L+ + E LR+ + RVA +L V + L G
Sbjct: 279 --------PDLMPAAVDELLRVLSVADSIPLRVAAEDIELS--GRTVPADDGVIALLAGA 328
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+HDPE + +P+ D R + ++ FG G C+G+ A L+L+ L
Sbjct: 329 NHDPEQFDDPERVDFHR---------TDNHHVAFGYGVHQCVGQHLARLELEVALE 375
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 60.7 bits (148), Expect = 3e-10
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 33/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
D + + + A DT++ ++ L + + LR +
Sbjct: 219 DGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLRED------------ 266
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P L+ ++E LR T ERVA R +L I KG ++ +
Sbjct: 267 --------PSLVGNAVEELLRYLTIGQFGGERVATRDVELGGVRI--AKGEQVVAHVLAA 316
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
DP P+ FD R +L FG G CIG++ A ++L+
Sbjct: 317 DFDPAFVEEPERFDITR---------RPAPHLAFGFGAHQCIGQQLARIELQIVFE 363
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 60.7 bits (148), Expect = 3e-10
Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 34/175 (19%)
Query: 141 DITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTY 200
++TE+ + FAG D+ ++++ + LA + ++ +
Sbjct: 225 ELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALAD-------------- 270
Query: 201 ESYNEMP-LLDKVIKESLRMYTPLSQL--ERVAGRPYQLPNTDIVVDKGTKMFIPLYGLH 257
P ++ + ++E LR + R A + + + G + L +
Sbjct: 271 ------PDVMARAVEEVLRTARAGGSVLPPRYASEDMEFG--GVTIRAGDLVLFDLGLPN 322
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
D + P+ FD R + L FG G +CIG A L+L++
Sbjct: 323 FDERAFTGPEEFDAARTPNPH---------LTFGHGIWHCIGAPLARLELRTMFT 368
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 60.4 bits (147), Expect = 4e-10
Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 33/171 (19%)
Query: 144 EELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESY 203
EEL L AG++T+ V+ +++ L + +R
Sbjct: 230 EELR-DTLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKG----------------- 271
Query: 204 NEMP-LLDKVIKESLRMYTPLSQL-ERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPE 261
V++E+LR + L R A LP+ + +G + + P+
Sbjct: 272 ---EVTWADVVEETLRHEPAVKHLPLRYAVTDIALPD-GRTIARGEPILASYAAANRHPD 327
Query: 262 IYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ + D FD R E+ L FG G C+G A +++ L
Sbjct: 328 WHEDADTFDATRTVKEH---------LAFGHGVHFCLGAPLARMEVTLALE 369
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 60.0 bits (146), Expect = 6e-10
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 33/174 (18%)
Query: 141 DITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTY 200
++T+E + C G +T + ++ F + L N L
Sbjct: 229 NVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQIELLFES-------------- 274
Query: 201 ESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHH 258
P ++V+ E +R +P+ R+A + + ++ G + + +
Sbjct: 275 ------PEKAERVVNELVRYLSPVQAPNPRLAIKDVVI--DGQLIKAGDYVLCSILMANR 326
Query: 259 DPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
D + P+PDV D R A + + FG G C+G A L+
Sbjct: 327 DEALTPDPDVLDANRAAVSD---------VGFGHGIHYCVGAALARSMLRMAYQ 371
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 61/400 (15%), Positives = 117/400 (29%), Gaps = 139/400 (34%)
Query: 92 KFMSYMM--LLRKAAYFFLDVVHQNVSYREQNNIKRND---FINIMMELKKTDPDITEEL 146
KF+ Y+ + F V++ ++ E ++ ND +++ T T+EL
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 147 ITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAK----YGG------ 196
I + A +K S L + + A+ +GG
Sbjct: 123 IKN----YITARIMAKRPF----------DKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 197 ---EL--TYESYNEMPLLDKVIKESLRMYTPLSQLERVAGRPYQLPNTDIVVDKGTKMFI 251
EL Y++Y+ L+ +IK S + L + A + +
Sbjct: 169 YFEELRDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVF----------------- 209
Query: 252 PLYGLHHDPEIYPNPDVFDPERFAPENADNIPNYAYL-------PFGEGPRNCIGKRFAL 304
+ + EN N P+ YL P IG +
Sbjct: 210 --------------TQGLNILEWL-ENPSNTPDKDYLLSIPISCPL-------IG----V 243
Query: 305 LQL--------KSGLAH-----------------------SLSNFEWDS--DHTNEMFPL 331
+QL G + ++ W+S + +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SWESFFVSVRKAITV 302
Query: 332 METCG-RNLETI-LTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLE-----INSLENP 384
+ G R E T+L + S++ E + M + T ++ NS
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 385 DCEFRRISKEMFTENNNMRLQIILA-----LILLIPYLRK 419
+++ + N ++++ L L LRK
Sbjct: 363 G---KQVEISLV----NGAKNLVVSGPPQSLYGLNLTLRK 395
Score = 28.9 bits (64), Expect = 5.4
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 10 RNLETILTTLDYNKKHQSIDVKE 32
R L+T+ L++ K Q ID+ E
Sbjct: 1860 RALDTVTNVLNFIKL-QKIDIIE 1881
Score = 28.9 bits (64), Expect = 5.4
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 337 RNLETILTTLDYNKKHQSIDVKE 359
R L+T+ L++ K Q ID+ E
Sbjct: 1860 RALDTVTNVLNFIKL-QKIDIIE 1881
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 59.2 bits (144), Expect = 1e-09
Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 35/177 (19%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
++ E G + + LY L + + +++R
Sbjct: 227 RGEVGETEAVGLAGPLQIGGEAVTHN-VGQMLYLLLTRRELMARMRER------------ 273
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ--LERVAGRPYQLPNTDIVVDKGTKMFIPLYG 255
P + E LR + + L R+A ++ + G +++
Sbjct: 274 --------PGARGTALDELLRWISHRTSVGLARIALEDVEVH--GTRIAAGEPVYVSYLA 323
Query: 256 LHHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ DP+++P+PD D +R +L +G G C G A +Q + +
Sbjct: 324 ANRDPDVFPDPDRIDLDR---------DPNPHLAYGNGHHFCTGAVLARMQTELLVD 371
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 58.8 bits (143), Expect = 2e-09
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 32/176 (18%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
D + + + AG++T++ L ++Y+ A++ K++
Sbjct: 235 DGVLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQHPDQWMKIKEN------------ 282
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P L + ++E LR L RVA +++ + + GT +F+ +
Sbjct: 283 --------PELAPQAVEEVLRWSPTLPVTATRVAAEDFEV--NGVRIPTGTPVFMCAHVA 332
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
H DP ++ + D FD E + FG GP C+G A L+L +A
Sbjct: 333 HRDPRVFADADRFDITV-KREA-------PSIAFGGGPHFCLGTALARLELTEAVA 380
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 56.1 bits (136), Expect = 1e-08
Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 52/210 (24%)
Query: 125 RNDFINIMMEL---KKTDP--DITEELITAQ--------------CFLFFFAGFDTSSTV 165
+ +IM + K+ P D+T LI A L AG +T+ ++
Sbjct: 191 LTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISL 250
Query: 166 LTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTYESYNEMP-LLDKVIKESLRMYTPLS 224
+ ++ L+ + ++ + + V++E+LR TP S
Sbjct: 251 IVNAVVNLSTHPEQRALVLSG--------------------EAEWSAVVEETLRFSTPTS 290
Query: 225 QL-ERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIY-PNPDVFDPERFAPENADNI 282
+ R A + D V+ G + + L D + P D FD R +
Sbjct: 291 HVLIRFAAEDVPV--GDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGN----- 343
Query: 283 PNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
++ FG GP C G + ++ L
Sbjct: 344 ---RHISFGHGPHVCPGAALSRMEAGVALP 370
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 54.6 bits (132), Expect = 3e-08
Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 35/175 (20%)
Query: 141 DITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGELTY 200
+IT L G ++ + L + +LR+E
Sbjct: 226 EITLSEAVGLAVLLQIGGEAVTN-NSGQMFHLLLSRPELAERLRSE-------------- 270
Query: 201 ESYNEMP-LLDKVIKESLRMYTPLSQ--LERVAGRPYQLPNTDIVVDKGTKMFIPLYGLH 257
P + + I E LR + L R+A ++ + + G +++ +
Sbjct: 271 ------PEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIK--GVRIRAGDAVYVSYLAAN 322
Query: 258 HDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
DPE++P+PD D ER + + FG GP C G A L+ + +
Sbjct: 323 RDPEVFPDPDRIDFERSPNPH---------VSFGFGPHYCPGGMLARLESELLVD 368
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 63/473 (13%), Positives = 118/473 (24%), Gaps = 130/473 (27%)
Query: 5 METCGRNLETILT--TLDYNKKHQSIDVKEY---LGRYMTDVIGSTVFGLEINSLENPDC 59
+ G+ T + K +D K + L + + L+
Sbjct: 158 VLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-------ETVLEMLQK--- 204
Query: 60 EFRRISKEMFTENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYRE 119
+T ++ I L + + LR+ + L V QN
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNV-QNAKAWN 260
Query: 120 QNNIK-------RN-DFINIMMELKKTDPDITEELITAQCFLFFFAGFDTSSTVLTFSLY 171
N+ R + + T + Y
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS----------MTLTPDEVKSLLLKY 310
Query: 172 ---------ELAKNKS------IQSKLRNEINDTKAKYGGELTYESYNEMPLLDKVIKES 216
+ I +R+ + ++ N L +I+ S
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-------NWKHVNCDKL-TTIIESS 362
Query: 217 L---------RMYT-----------PLSQLERV-AGRPYQLPNTDIV--------VDKGT 247
L +M+ P L + +V V+K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQP 421
Query: 248 KMF-IPLYGLH-------------HDPEI--YPNPDVFDPERFAPENADNIPNYAYLPFG 291
K I + ++ H + Y P FD + P D Y Y G
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSHIG 478
Query: 292 ---EGPRNCIGKRFALLQLKSGLAHSLSNFEWDSDHTNEMFPLMETCGRNLETILTTLDY 348
+ + +R L ++ +F + G L T L L +
Sbjct: 479 HHLKNIEH--PERMTLFRMV------FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKF 529
Query: 349 NKKHQSI-DVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENN 400
K + I D R + I + +E N + + + RI+ + E+
Sbjct: 530 YKPY--ICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRIA--LMAEDE 577
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 49.9 bits (120), Expect = 8e-07
Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 38/176 (21%)
Query: 139 DPDITEELITAQCFLFFFAGFDTSSTVLTFSLYELAKNKSIQSKLRNEINDTKAKYGGEL 198
+I++E + + + L ++ L + + LR +
Sbjct: 208 GAEISDEELAGLAEGNLIMAAEQMAAQLAVAVLLLVTHPDQMALLREK------------ 255
Query: 199 TYESYNEMP-LLDKVIKESLRMYTPLSQ-LERVAGRPYQLPNTDIVVDKGTKMFIPLYGL 256
P L+D +E LR + + RVA ++ + G + +
Sbjct: 256 --------PELIDSATEEVLRHASIVEAPAPRVALADVRM--AGRDIHAGDVLTCSMLAT 305
Query: 257 HHDPEIYPNPDVFDPERFAPENADNIPNYAYLPFGEGPRNCIGKRFALLQLKSGLA 312
+ P D FD R + + FG G +CIG A LQL+ L
Sbjct: 306 NRAP-----GDRFDITREKATH---------MAFGHGIHHCIGAPLARLQLRVALP 347
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 35.9 bits (82), Expect = 0.024
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 8/158 (5%)
Query: 300 KRFALLQLKSGLAHSLSNFEWDSDHTNEMFPLMETCGRNLETILTTLDYNKKHQSIDVKE 359
K +L++ + D + + P + L S
Sbjct: 160 KHSHAGELEALGGVKPAVLTRSGDPSQPLLPQHSSLETQLFCEQGDGGTEGHSPS----G 215
Query: 360 YLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMFTENNNMRLQIILALILLIPYLRK 419
L + D + V + LE P F R+ + E + + I +LL P
Sbjct: 216 ILEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPIRFLFVLLGPEAPH 275
Query: 420 FMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFIN 457
+ Y L R AA + V + +Y Q+ R + ++
Sbjct: 276 -IDYTQLGRAAATLMSERVFRIDAYMAQS---RGELLH 309
Score = 34.4 bits (78), Expect = 0.078
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 10 RNLETILTTLDYNKKHQSIDVKEYLGRYMTDVIGSTVFGLEINSLENPDCEFRRISKEMF 69
+LET L + + L + D + V + LE P F R+ +
Sbjct: 193 SSLETQLFCEQGDGGTEGHSPSGILEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAE 252
Query: 70 TENNNMRLQIILALILLIPYLRKFMSYMMLLRKAAYFFLDVVHQNVSYREQNNIKRNDFI 129
E + + I +LL P + Y L R AA + V + +Y Q+ R + +
Sbjct: 253 LEAVELPVPIRFLFVLLGPEAPH-IDYTQLGRAAATLMSERVFRIDAYMAQS---RGELL 308
Query: 130 N 130
+
Sbjct: 309 H 309
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 32.0 bits (72), Expect = 0.37
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 172 ELAKNKSIQSKLRNEINDTKAKYGGELTYES----YNEMPLLDKVIKESLRMYTPLSQLE 227
E+ + ++ R I + +Y G +TY + D V S Y P+ +
Sbjct: 174 EMTTAEPHEAMWRETIARVRTEYDGLVTYNCNHGREEHVRFWDAVDLISSSAYYPIDRWR 233
Query: 228 RVAGR 232
Sbjct: 234 DRVPV 238
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 30.4 bits (69), Expect = 0.90
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 227 ERVAGRPYQLPNTDIVVDKGTKMFIPLYGLHHDPEIY 263
R+A + + ++ + H+P++Y
Sbjct: 175 ARLAEIKAAYSDAKLCDPDDVRVI---FLTAHNPKLY 208
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.1
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 211 KVIKESLRMYTPLS 224
K ++ SL++Y S
Sbjct: 23 KKLQASLKLYADDS 36
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 6.9
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 15 ILTTLDYN--KKHQSIDVKEYLG-----RYMTDVIGSTVFGLEINSLENPDCEFRRISKE 67
+ ++Y+ K S+D + R ++ GLE++ + +F I+ E
Sbjct: 118 MAIQVNYSSEVKENSVDSDDKAKVPPLIRIVS--------GLELSDTKQKGKKFLVIAYE 169
Query: 68 MFTEN 72
F EN
Sbjct: 170 PF-EN 173
Score = 27.8 bits (61), Expect = 6.9
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 342 ILTTLDYN--KKHQSIDVKEYLG-----RYMTDVIGSTVFGLEINSLENPDCEFRRISKE 394
+ ++Y+ K S+D + R ++ GLE++ + +F I+ E
Sbjct: 118 MAIQVNYSSEVKENSVDSDDKAKVPPLIRIVS--------GLELSDTKQKGKKFLVIAYE 169
Query: 395 MFTEN 399
F EN
Sbjct: 170 PF-EN 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.403
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,579,466
Number of extensions: 467958
Number of successful extensions: 1245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 122
Length of query: 489
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 392
Effective length of database: 3,993,456
Effective search space: 1565434752
Effective search space used: 1565434752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)