RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14266
(560 letters)
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 327 bits (841), Expect = e-106
Identities = 90/330 (27%), Positives = 165/330 (50%), Gaps = 26/330 (7%)
Query: 21 PKPVPL---MHEPKLSFQVRDFNNSKKSDNYPSRYNRQRCFAVIPVLVLADSEIIKHVLI 77
P P+P + F + D KK Y+ Q+ PVL + D ++IK VL+
Sbjct: 19 PTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQ-----PVLAITDPDMIKTVLV 73
Query: 78 KD-FDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPTFTSGKIKEMFPLMESC 136
K+ + VFT+R F + + +EW+++R+ +SPTFTSGK+KEM P++
Sbjct: 74 KECYSVFTNRRPFG---PVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQY 130
Query: 137 GRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEINALENPDCEFRKVSKEML 196
G +V L + + + + +K+ G Y D+I ST FG+ I++L NP F + +K++L
Sbjct: 131 GDVLVRNLRREA-ETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLL 189
Query: 197 NPKLRFRIVMILVLL--IPNIRKFLSGLMMDRKNVQFFLDLVHQNLSYR-EQNNIKRNDF 253
+ + + + I + L+ + R+ F V + R E R DF
Sbjct: 190 RFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDF 249
Query: 254 INIMMELRKNDPD-----ITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKNKSIQSTL 308
+ +M++ + + +++ + AQ +F AG++T+S+VL+F +YELA + +Q L
Sbjct: 250 LQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKL 309
Query: 309 RKEINDTKAKYGGELTYESLI----LDWII 334
++EI+ TY++++ LD ++
Sbjct: 310 QEEIDAVLPN-KAPPTYDTVLQMEYLDMVV 338
Score = 180 bits (459), Expect = 9e-51
Identities = 40/140 (28%), Positives = 78/140 (55%), Gaps = 6/140 (4%)
Query: 422 HVLI---KDFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLR 478
++I + + + +++ + AQ +F AG++T+S+VL+F +YELA + +Q L+
Sbjct: 251 QLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQ 310
Query: 479 KEINDTKAKYGGELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVID 538
+EI+ TY++ +M LD V+ E+LR++ +L+R+ + ++ + I
Sbjct: 311 EEIDAVLPN-KAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEIN--GMFIP 367
Query: 539 KGTKMFIPLYGLHHDPEIYP 558
KG + IP Y LH DP+ +
Sbjct: 368 KGVVVMIPSYALHRDPKYWT 387
Score = 84.2 bits (209), Expect = 2e-17
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 341 LLYYLKTIFISYQYWKSRNVPFLRPTFPFGNVYEAITMQRPTHFVYQDIYMEIKFGLKSP 400
+ Y + + +K +P P GN+ ++ + + + K+G
Sbjct: 1 MAYGTHS----HGLFKKLGIPGPTPLPFLGNI---LSYHKGFCMFDMECHK--KYG---K 48
Query: 401 FAGIFTTTTPVLVLADSEIIKHVLIKD-FDVFTDRDITEE 439
G + PVL + D ++IK VL+K+ + VFT+R
Sbjct: 49 VWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGP 88
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 151 bits (383), Expect = 3e-40
Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 18/284 (6%)
Query: 61 IPVLVLADSEIIKHVLIKDFDVFTDR--GFFEANETDEPIMRNLFGLT-GDEWRKMRNKM 117
+++ E +K L+ + + + + L + W K R +
Sbjct: 34 KTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVI 93
Query: 118 SPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGME 177
F+ + + +V IL + + + +++ L D++ FGME
Sbjct: 94 DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTP-VSMQDMLTYTAMDILAKAAFGME 152
Query: 178 INALENPDCEFRKVSKEMLNP--KLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLD- 234
+ L + K ML R + L +R+ + + ++
Sbjct: 153 TSMLLGAQKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESI----RFLRQVGRD 208
Query: 235 LVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFS 294
V + ++ D + +++ + +E + FFIAG +TS+ L F+
Sbjct: 209 WVQRRREALKRGEEVPADILTQILK--AEEGAQDDEGLLDNFVTFFIAGHETSANHLAFT 266
Query: 295 LYELAKNKSIQSTLRKEINDTKAKYGGELTYESL----ILDWII 334
+ EL++ I + L+ E+ D L +E L L ++
Sbjct: 267 VMELSRQPEIVARLQAEV-DEVIGSKRYLDFEDLGRLQYLSQVL 309
Score = 115 bits (290), Expect = 9e-28
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 429 DVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKY 488
D + + +T FFIAG +TS+ L F++ EL++ I + L+ E+ D
Sbjct: 237 GAQDDEGLLDNFVT-----FFIAGHETSANHLAFTVMELSRQPEIVARLQAEV-DEVIGS 290
Query: 489 GGELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLY 548
L +E + L +V+KESLR+Y P R+ + + + T + Y
Sbjct: 291 KRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLI--DGVRVPGNTPLLFSTY 348
Query: 549 GLHHDPEIYP 558
+ +
Sbjct: 349 VMGRMDTYFE 358
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 145 bits (366), Expect = 9e-38
Identities = 38/289 (13%), Positives = 79/289 (27%), Gaps = 34/289 (11%)
Query: 56 RCFAVIPVLVLADSEIIKHVLIKDFDVFTDRGFFE-ANETDEPIMRNL----------FG 104
R + + +++ + K F V D E + M + +
Sbjct: 71 RVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTYMPSTELTGGYRILSYL 130
Query: 105 LTGDEWRKMRNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRY 164
+ + + +FP ++ + L K ++ K D
Sbjct: 131 DPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLK-GKADFGGSSDGT 189
Query: 165 MTDLIGSTVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMM 224
+ + +G + ++K +L L P + L ++
Sbjct: 190 AFNFLARAFYGTNPADTKLKADAPGLITK------------WVLFNLHPLLSIGLPRVIE 237
Query: 225 DRKNVQFFLDLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGF 284
+ F L Y+ I++E K I+ E T A
Sbjct: 238 EPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEADKLG--ISREEATHN---LLFATC 292
Query: 285 DTSSTVLTFSLYELAK-----NKSIQSTLRKEINDTKAKYGGELTYESL 328
+ + + K + + L +EI GGELT ++
Sbjct: 293 FNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAI 341
Score = 132 bits (333), Expect = 2e-33
Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 17/189 (8%)
Query: 384 FVYQDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHVLIKDFDVFTD-------RDI 436
+V +++ + GL T + + + + + I
Sbjct: 219 WVLFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEADKLGI 278
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAK-----NKSIQSTLRKEINDTKAKYGGE 491
+ E T A + + + K + + L +EI GGE
Sbjct: 279 SREEATHN---LLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGE 335
Query: 492 LTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTD--IVIDKGTKMFIPLYG 549
LT + ++M L V+ E LR P+ + + + D + G ++
Sbjct: 336 LTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPL 395
Query: 550 LHHDPEIYP 558
DP+I+
Sbjct: 396 ATRDPKIFD 404
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 142 bits (361), Expect = 4e-37
Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 18/281 (6%)
Query: 61 IPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRN---LFGLTGDEWRKMRNKM 117
+ + + D E + + K +R + + W+K R +
Sbjct: 56 VESVYVIDPEDVALLF-KSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVAL 114
Query: 118 SPTFTSGK-IKEMFPLMESCGRNVVSILTKYINK---KNESIDVKEYLGRYMTDLIGSTV 173
+ + + K PL+++ R+ VS+L + I K N S D+ + L R+ + I + +
Sbjct: 115 NQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNVI 174
Query: 174 FGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDR------K 227
FG LE + + + F + ++ L P++ +
Sbjct: 175 FGERQGMLEEVVNPEAQRFIDAI--YQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDV 232
Query: 228 NVQFFLDLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTS 287
Q +D+ I+ L D ++ E I A G DT+
Sbjct: 233 IFSKADIYTQNFYWELRQKGSVHHDYRGILYRL-LGDSKMSFEDIKANVTEMLAGGVDTT 291
Query: 288 STVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESL 328
S L + LYE+A+N +Q LR E+ + + L
Sbjct: 292 SMTLQWHLYEMARNLKVQDMLRAEVLAARHQ-AQGDMATML 331
Score = 113 bits (286), Expect = 3e-27
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 429 DVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKY 488
+ D ++ E I A G DT+S L + LYE+A+N +Q LR E+ + +
Sbjct: 264 RLLGDSKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQ- 322
Query: 489 GGELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVID-----KGTKM 543
+PLL IKE+LR++ L R D+V+ T +
Sbjct: 323 AQGDMATMLQLVPLLKASIKETLRLHPISVTLQRYL-------VNDLVLRDYMIPAKTLV 375
Query: 544 FIPLYGLHHDPEIYP 558
+ +Y L +P +
Sbjct: 376 QVAIYALGREPTFFF 390
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 140 bits (356), Expect = 2e-36
Identities = 39/315 (12%), Positives = 100/315 (31%), Gaps = 21/315 (6%)
Query: 21 PKPVPL---MHEPKLSFQVRDFNNSKK-SDNYPSRYNRQRCFAVIPVLVLADSEIIKHVL 76
P + + + + Y + L+++ S + H++
Sbjct: 50 PGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVW--ISGEETLIISKSSSMFHIM 107
Query: 77 IKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPTFTSGKIKEMFPLMESC 136
+ +F + W+ R + + M +
Sbjct: 108 KHNHYSSRFGSKLGLQCIGMHEKGIIFNNNPELWKTTRPFFMKALSGPGLVRMVTVCAES 167
Query: 137 GRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEINALENPDCEFRKVSKEML 196
+ + L + N+ +DV L R M D + + ++ +
Sbjct: 168 LKTHLDRLEEVTNES-GYVDVLTLLRRVMLDTSNTLFLRIPLDES-----AIVVKIQGYF 221
Query: 197 NPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLV---HQNLSYREQNNIKRNDF 253
+ ++ ++I + I K+++ ++++ + E+ + DF
Sbjct: 222 D---AWQALLIKPDIFFKISWLYKKYEKSVKDLKDAIEVLIAEKRRRISTEEKLEECMDF 278
Query: 254 INIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIN 313
++ + D+T E + IA DT S L F L+ +AK+ +++ + KEI
Sbjct: 279 ATELILA-EKRGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQ 337
Query: 314 DTKAKYGGELTYESL 328
+ ++ + +
Sbjct: 338 TVIGE--RDIKIDDI 350
Score = 107 bits (269), Expect = 6e-25
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 432 TDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGE 491
D+T E + IA DT S L F L+ +AK+ +++ + KEI + +
Sbjct: 287 KRGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIGE--RD 344
Query: 492 LTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVID-----KGTKMFIP 546
+ + ++ +++ I ES+R + + R D VID KGT + +
Sbjct: 345 IKIDDIQKLKVMENFIYESMRYQPVVDLVMRKA-------LEDDVIDGYPVKKGTNIILN 397
Query: 547 LYGLHHDPEIYP 558
+ +H E +P
Sbjct: 398 IGRMHR-LEFFP 408
Score = 40.4 bits (95), Expect = 0.001
Identities = 11/105 (10%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 327 SLILDWIILSSIVILLYYLKTIFISYQYWKSRNVPFLRPTFPFGNVYEAITMQRPTHFVY 386
+ I+ + ++ + +L + + Y + ++P G +
Sbjct: 14 TSIVPEAMPAATMPVLLLTGLFLLVWNYEGTSSIPGPGYCMGIGPLISHGRFLWMGIGSA 73
Query: 387 QDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHVLIKDFDVF 431
+ Y +G F ++ + L+++ S + H++ +
Sbjct: 74 CNYYNR-VYG---EFMRVWISGEETLIISKSSSMFHIMKHNHYSS 114
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 139 bits (352), Expect = 5e-36
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 436 ITEELITAQCFVFFIAGFDTSSTVLTFSLYELA-KNKSIQSTLRKEINDTKAKYG-GELT 493
+E + F F + +L + +++ + L +EI YG G +T
Sbjct: 261 PKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVT 320
Query: 494 YESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTD--IVIDKGTKMFIPLYGLH 551
E+ ++MPL V+ ESLR+ P+ ++ + + D + KG +F
Sbjct: 321 LEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGYQPFAT 380
Query: 552 HDPEIYP 558
DP+++
Sbjct: 381 KDPKVFD 387
Score = 119 bits (299), Expect = 5e-29
Identities = 40/277 (14%), Positives = 88/277 (31%), Gaps = 27/277 (9%)
Query: 65 VLADSEIIKHVLIKDFDVFTDR----------GFFEANETDEPIMRNLFGLTGDEWRKMR 114
V ++ ++I + K F + D G + + R L L E R +
Sbjct: 62 VSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQ 121
Query: 115 NK-MSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTV 173
K + + P E+ + L + KN + + +G
Sbjct: 122 LKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAEL-AKNGKAAFNDVGEQAAFRFLGRAY 180
Query: 174 FGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFL 233
F + + + +++ + F + L L +P + + F L
Sbjct: 181 FNSN-----PEETKLGTSAPTLISSWVLFNLAPTLDLGLPWF-------LQEPLLHTFRL 228
Query: 234 DLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTF 293
+Y + + ++ +ME + +E + F F +
Sbjct: 229 PAFLIKSTYNKLYDYFQSVATP-VMEQAEKLGVPKDEAVHNILFAVCFNTFGGVKILFPN 287
Query: 294 SLYELA-KNKSIQSTLRKEINDTKAKYG-GELTYESL 328
+L + +++ + L +EI YG G +T E++
Sbjct: 288 TLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAI 324
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 134 bits (340), Expect = 3e-34
Identities = 33/277 (11%), Positives = 91/277 (32%), Gaps = 18/277 (6%)
Query: 61 IPVLVLADSEIIKHVLIKDFDVFTDRGFFEANET---DEPIMRNLFGLTGDEWRKMRNKM 117
+ L +++ + + R + + L L G EW+++R+
Sbjct: 72 FDSVHLGSPSLLEALYRTE-SAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAF 130
Query: 118 SPTFTSGK-IKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGM 176
I ++ + + + + + +++ D+ L ++ + I ++
Sbjct: 131 QKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLYEK 190
Query: 177 EINALENP-DCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDR--KNVQFFL 233
L+ + E + K +++ + K L+ +
Sbjct: 191 RFGLLQKETEEEALTFITAI---KTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDTIF 247
Query: 234 DLVHQ--NLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVL 291
V + + + DF+ + + ++++ + A +A +T++ L
Sbjct: 248 KSVKPCIDNRLQRYSQQPGADFLCDIYQ----QDHLSKKELYAAVTELQLAAVETTANSL 303
Query: 292 TFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESL 328
+ LY L++N Q L +E+ + E L
Sbjct: 304 MWILYNLSRNPQAQRRLLQEV-QSVLPDNQTPRAEDL 339
Score = 113 bits (284), Expect = 6e-27
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 13/132 (9%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
++++ + A +A +T++ L + LY L++N Q L +E+ +
Sbjct: 276 QDHLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEV-QSVLPDNQTP 334
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVID-----KGTKMFIPL 547
E MP L +KES+R+ + R + V+ KGT + +
Sbjct: 335 RAEDLRNMPYLKACLKESMRLTPSVPFTTRTL-------DKPTVLGEYALPKGTVLTLNT 387
Query: 548 YGLHHDPEIYPT 559
L + +
Sbjct: 388 QVLGSSEDNFED 399
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 133 bits (337), Expect = 6e-34
Identities = 53/289 (18%), Positives = 104/289 (35%), Gaps = 34/289 (11%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFG-------LTGDEWRKMR 114
L+ +IK + + +R+ G W+K
Sbjct: 48 VTRYLSSQRLIKEACDESRFDKNLSQALK-------FVRDFAGDGLFTSWTHEKNWKKAH 100
Query: 115 NKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVF 174
N + P+F+ +K +M +V + E I+V E + R D IG F
Sbjct: 101 NILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNAD--EHIEVPEDMTRLTLDTIGLCGF 158
Query: 175 GMEINALENPDC-EFRKVSKEMLNPKLR--FRIVMILVLLIPNIRKFLSGLMMDRKNVQF 231
N+ F L+ + R N R+F +++++
Sbjct: 159 NYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQF-------QEDIKV 211
Query: 232 FLDLVHQNLSYREQNNIKRNDFINIMMELR--KNDPDITEELITAQCFLFFIAGFDTSST 289
DLV + ++ R+ + + +D + M+ + + + +E I Q F IAG +T+S
Sbjct: 212 MNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSG 271
Query: 290 VLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESL----ILDWII 334
+L+F+LY L KN + +E +Y+ + + ++
Sbjct: 272 LLSFALYFLVKNPHVLQKAAEEAARVLV--DPVPSYKQVKQLKYVGMVL 318
Score = 113 bits (285), Expect = 4e-27
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGG 490
D +I ++IT F IAG +T+S +L+F+LY L KN + +E
Sbjct: 249 LDDENIRYQIIT-----FLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLV--DP 301
Query: 491 ELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGL 550
+Y+ ++ + V+ E+LR++ L + ++KG ++ + + L
Sbjct: 302 VPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGG-EYPLEKGDELMVLIPQL 360
Query: 551 HHDPEIYP 558
H D I+
Sbjct: 361 HRDKTIWG 368
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 123 bits (312), Expect = 1e-30
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 426 KDFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTK 485
KD TD ++ LI +AG TSST + + LA++K++Q E
Sbjct: 243 KDGRPLTDDEVAGMLIG-----LLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVC 297
Query: 486 AKYGGELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFI 545
+ LTY+ ++ LLDR IKE+LR+ P+ + R+ + I G ++ +
Sbjct: 298 GENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVA--GYTIPPGHQVCV 355
Query: 546 PLYGLHHDPEIYP 558
+ +
Sbjct: 356 SPTVNQRLKDSWV 368
Score = 119 bits (300), Expect = 4e-29
Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 37/279 (13%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFG------LTGDEWRKMRN 115
L S+ + + + + +FG + + + +
Sbjct: 56 TFTYLLGSDAAALLFNSKNEDLNAEDVYS------RLTTPVFGKGVAYDVPNPVFLEQKK 109
Query: 116 KMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFG 175
+ K+ ++E + ++ +V E L + + G
Sbjct: 110 MLKSGLNIAHFKQHVSIIEKETKEYFESW-----GESGEKNVFEALSELIILTASHCLHG 164
Query: 176 MEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDL 235
EI + N + ++ ++ ++ L +P+ R+ R+ F
Sbjct: 165 KEIRSQLNE--KVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAH---REIKDIFYKA 219
Query: 236 VHQNLSYREQNNIKRNDFINIMMELR-KN-----DPDITEELITAQCFLFFIAGFDTSST 289
+ + R Q+ K +D + +++ K+ D ++ LI +AG TSST
Sbjct: 220 IQK----RRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIG-----LLLAGQHTSST 270
Query: 290 VLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESL 328
+ + LA++K++Q E + LTY+ L
Sbjct: 271 TSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQL 309
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 122 bits (309), Expect = 4e-30
Identities = 33/295 (11%), Positives = 82/295 (27%), Gaps = 39/295 (13%)
Query: 61 IPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRN-LFGLTGDEWRKMRNKMSP 119
V + + VL + F + + + + G+ + +
Sbjct: 57 KYVHFITNPLSYHKVLCHGKYFDWKKFHFATSA--KAFGHRSIDPMDGNTTENINDTFIK 114
Query: 120 TFTSGKIKEMFPLMESCGRNVVSILTKYIN-----KKNESIDVKEYLGRYMTDLIGSTVF 174
T + + M N+ I+ ++ + + + R M + T+F
Sbjct: 115 TLQGHALNSLTESMM---ENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIF 171
Query: 175 GMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDR--KNVQFF 232
G ++ + + P + L M +
Sbjct: 172 GRDLTRRDTQKAHILNNLDNF----------KQFDKVFPALVAGLPIHMFRTAHNAREKL 221
Query: 233 LDLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLT 292
+ + + ++ ++ I++ M L + + A +
Sbjct: 222 AESLRHENLQKRES---ISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATF 278
Query: 293 FSLYELAKNKSIQSTLRKEINDTKAKYGGE---------LTYESL----ILDWII 334
+SL+++ +N +E+ T G + L+ L +LD II
Sbjct: 279 WSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSII 333
Score = 102 bits (255), Expect = 3e-23
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 17/144 (11%)
Query: 426 KDFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTK 485
F D + + + A + +SL+++ +N +E+ T
Sbjct: 248 DTLSTFDDLEKAKTHLV-----VLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTL 302
Query: 486 AKYGGE---------LTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDI- 535
G + L+ +++P+LD +IKESLR+ + + R + L D
Sbjct: 303 ENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI-RTAKEDFTLHLEDGS 361
Query: 536 -VIDKGTKMFIPLYGLHHDPEIYP 558
I K + + +H DPEIYP
Sbjct: 362 YNIRKDDIIALYPQLMHLDPEIYP 385
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 121 bits (305), Expect = 7e-30
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGG 490
F+ +IT I+ AG TSS +++L EL +++ + + E+ D G
Sbjct: 241 FSADEITGMFIS-----MMFAGHHTSSGTASWTLIELMRHRDAYAAVIDEL-DELYGDGR 294
Query: 491 ELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGL 550
+++ + ++P L+ V+KE+LR++ PL L R+ +++ I +G +
Sbjct: 295 SVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQ--GHRIHEGDLVAASPAIS 352
Query: 551 HHDPEIYP 558
+ PE +P
Sbjct: 353 NRIPEDFP 360
Score = 113 bits (286), Expect = 2e-27
Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 30/275 (10%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFG----LTGDEWRKMRNKM 117
V++L+ S + D + P M +FG R+
Sbjct: 49 QVVLLSGSHANEFFFRAGDDDLDQAKAY-------PFMTPIFGEGVVFDASPERRKEMLH 101
Query: 118 SPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGME 177
+ ++K +E R +++ + ID+ ++ + + G +
Sbjct: 102 NAALRGEQMKGHAATIEDQVRRMIADW-----GEAGEIDLLDFFAELTIYTSSACLIGKK 156
Query: 178 INALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVH 237
+ D F K+ E+ + L I + R+ V D+++
Sbjct: 157 FR--DQLDGRFAKLYHELERG-TDPLAYVDPYLPIESFRRRDEAR---NGLVALVADIMN 210
Query: 238 QNLSYREQ--NNIKRNDFINIMMELRKND--PDITEELITAQCFLFFIAGFDTSSTVLTF 293
+ D +++++ ++ P + + IT AG TSS ++
Sbjct: 211 G---RIANPPTDKSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASW 267
Query: 294 SLYELAKNKSIQSTLRKEINDTKAKYGGELTYESL 328
+L EL +++ + + E+ D G +++ +L
Sbjct: 268 TLIELMRHRDAYAAVIDEL-DELYGDGRSVSFHAL 301
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 120 bits (303), Expect = 2e-29
Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 34/290 (11%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLT------GDEWRKMRN 115
V VL D V+ + + +M +F + DE +M+
Sbjct: 63 YVTVLLDPHSYDAVVWEPRTRLDFHAYAI------FLMERIFDVQLPHYSPSDEKARMKL 116
Query: 116 KMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFG 175
+ + M + ++ T+ + +E + + ++ ++ T++G
Sbjct: 117 TLLHRELQALTEAM---YTNLHAVLLGDATEAGSGWHE-MGLLDFSYSFLLRAGYLTLYG 172
Query: 176 MEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDL 235
+E + +V + R ++ L ++ D+ ++
Sbjct: 173 IEALPRTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVG------DKDHMCSVKSR 226
Query: 236 VHQNLS-YREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFS 294
+ + LS R R+ ++ + + ++EE+ L A +
Sbjct: 227 LWKLLSPARLARRAHRSKWLESYLLHLEEM-GVSEEMQARALVLQLWATQGNMGPAAFWL 285
Query: 295 LYELAKNKSIQSTLRKEI------NDTKAKYGGELTYESL----ILDWII 334
L L KN + +R E+ + L + L +LD ++
Sbjct: 286 LLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVL 335
Score = 109 bits (274), Expect = 1e-25
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 11/140 (7%)
Query: 429 DVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEI------N 482
+ ++EE+ + A + L L KN + +R E+
Sbjct: 251 LHLEEMGVSEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELESILWQA 310
Query: 483 DTKAKYGGELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDI---VIDK 539
+ L + D P+LD V+ ESLR+ + R +P D + +
Sbjct: 311 EQPVSQTTTLPQKVLDSTPVLDSVLSESLRLT-AAPFITREVVVDLAMPMADGREFNLRR 369
Query: 540 GTKMFI-PLYGLHHDPEIYP 558
G ++ + P DPEIY
Sbjct: 370 GDRLLLFPFLSPQRDPEIYT 389
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 117 bits (294), Expect = 3e-28
Identities = 41/276 (14%), Positives = 89/276 (32%), Gaps = 32/276 (11%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFG-----LTGDEWRKMRNK 116
V + + E+ + + + A E + L G R+ R
Sbjct: 66 TVYAVTNPELTGALA-------LNPDYHIAGPLWESLEGLLGKEGVATANGPLHRRQRRT 118
Query: 117 MSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGM 176
+ P F I P+ME + + +++D R + +
Sbjct: 119 IQPAFRLDAIPAYGPIMEEEAHALTERW-----QPGKTVDATSESFRVAVRVAARCLLRG 173
Query: 177 EINALENPD-CEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDL 235
+ C + ++ + + L +P R+F + L
Sbjct: 174 QYMDERAERLCVALATVFRGMYRRMVVPLGPLYRLPLPANRRF-------NDALADLHLL 226
Query: 236 VHQNLSYREQNNIKRNDFINIMMELRKNDPD---ITEELITAQCFLFFIAGFDTSSTVLT 292
V + ++ R + K +D + ++E + D + I E+ I Q G +T ++ +
Sbjct: 227 VDEIIAERRASGQKPDDLLTALLEAK--DDNGDPIGEQEIHDQVVAILTPGSETIASTIM 284
Query: 293 FSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESL 328
+ L LA + +R E+ G + +E +
Sbjct: 285 WLLQALADHPEHADRIRDEVEAVTG--GRPVAFEDV 318
Score = 115 bits (290), Expect = 1e-27
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 9/128 (7%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGG 490
+++I ++++ G +T ++ + + L LA + +R E+ G
Sbjct: 259 IGEQEIHDQVVA-----ILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTG--GR 311
Query: 491 ELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGL 550
+ +E ++ VI E++R+ + L R +L I G + Y +
Sbjct: 312 PVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELG--GYRIPAGADIIYSPYAI 369
Query: 551 HHDPEIYP 558
DP+ Y
Sbjct: 370 QRDPKSYD 377
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 112 bits (282), Expect = 7e-27
Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 29/270 (10%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIM--RNLFGLTGDEWRKMRNKMSP 119
V+ ++ + + + K+ + F ++ L G+ R R +
Sbjct: 55 NVIFISGALANRFLFTKEQETFQATWPLST----RILLGPNALATQMGEIHRSRRKILYQ 110
Query: 120 TFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEIN 179
F + P M+ + + K + L R D+ + G +++
Sbjct: 111 AFLPRTLDSYLPKMDGIVQGYLEQW-----GKANEVIWYPQLRRMTFDVAATLFMGEKVS 165
Query: 180 ALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQN 239
F + + + + L K R + + +
Sbjct: 166 QNPQLFPWFETYIQGLFSLPIP--------LPNTLFGKSQRA----RALLL---AELEKI 210
Query: 240 LSYREQNNIKRNDFINIMMELR-KNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+ R+Q D + I++ R N+ ++ + Q L AG +T ++ L+ L
Sbjct: 211 IKARQQQPPSEEDALGILLAARDDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLL 270
Query: 299 AKNKSIQSTLRKEINDTKAKYGGELTYESL 328
++ I+ +R+E N + ELT E+L
Sbjct: 271 GQHSDIRERVRQEQNKLQL--SQELTAETL 298
Score = 112 bits (282), Expect = 9e-27
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGG 490
+ ++ ++++ AG +T ++ L+ L ++ I+ +R+E N +
Sbjct: 239 LSLPELKDQILL-----LLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQL--SQ 291
Query: 491 ELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGL 550
ELT E+ +MP LD+V++E LR+ P+G R + Q KG + +
Sbjct: 292 ELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQF--QGFHFPKGWLVSYQISQT 349
Query: 551 HHDPEIYP 558
H DP++YP
Sbjct: 350 HADPDLYP 357
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 111 bits (279), Expect = 2e-26
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 426 KDFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQST--LRKEIND 483
+D + ++ ++ AG TSS T+S+ L +++ LRKEI +
Sbjct: 244 RDGTPMSLHEVCGMIVA-----AMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEE 298
Query: 484 TKAKYGGEL-TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTK 542
+ +L DEMP +R +ES+R PL L R ++ V+ KG
Sbjct: 299 ----FPAQLNYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVG--SYVVPKGDI 352
Query: 543 MFIPLYGLHHDPEIYP 558
+ HHD E +P
Sbjct: 353 IACSPLLSHHDEEAFP 368
Score = 105 bits (263), Expect = 2e-24
Identities = 40/281 (14%), Positives = 98/281 (34%), Gaps = 39/281 (13%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFG------LTGDEWRKMRN 115
V ++ D + +V + R + M +FG R+ N
Sbjct: 49 RVTIVGDPHEHSRFFLPRNEVLSPREVY-------SFMVPVFGEGVAYAAPYPRMREQLN 101
Query: 116 KMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFG 175
++ T K + P ++ V + +K I++ E + + +FG
Sbjct: 102 FLAEELTIAKFQNFVPAIQ---HEVRKFMAANWDKDEGEINLLEDCSTMIINTACQCLFG 158
Query: 176 MEINALENPDCEFRKVSKEMLNP--KLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFL 233
++ + F ++ +M + + ++L L +P + + +
Sbjct: 159 EDLRKRLDAR-RFAQLLAKMESSLIPAAVFLPILLKLPLPQSARCHEAR---TELQKILS 214
Query: 234 DLVHQNLSYREQNNIKRNDFINIMMELR-KN-----DPDITEELITAQCFLFFIAGFDTS 287
+++ + +D ++ ++ ++ ++ ++ +F AG TS
Sbjct: 215 EIIIARKEEEVNKDSSTSDLLSGLLSAVYRDGTPMSLHEVCGMIVA---AMF--AGQHTS 269
Query: 288 STVLTFSLYELAKNKSIQST--LRKEINDTKAKYGGELTYE 326
S T+S+ L +++ LRKEI + + +L Y
Sbjct: 270 SITTTWSMLHLMHPANVKHLEALRKEIEE----FPAQLNYN 306
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 105 bits (265), Expect = 8e-25
Identities = 33/252 (13%), Positives = 80/252 (31%), Gaps = 43/252 (17%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRN-LFGLTGDEWRKMRNKMSPT 120
P+ ++ D E ++ L+ + + + L G+ W++ R +
Sbjct: 42 PLALIFDPEGVEGALLAEGTTKATFQY----RALSRLTGRGLLTDWGESWKEARKALKDP 97
Query: 121 FTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEINA 180
F ++ ME R + E D+ + L+G +FG ++
Sbjct: 98 FLPKNVRGYREAMEEEARAFFGEW------RGEERDLDHEMLALSLRLLGRALFGKPLSP 151
Query: 181 LENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQNL 240
+ + + + M + R + L+ L R
Sbjct: 152 -SLAEHALKALDRIM----AQTRSPLALLDLAAEAR------------------------ 182
Query: 241 SYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAK 300
+R+ + +++ + + E ++ +AG +T ++ LT+S L+
Sbjct: 183 -FRKDRGALYREAEALIVHPPLS--HLPRERALSEAVTLLVAGHETVASALTWSFLLLSH 239
Query: 301 NKSIQSTLRKEI 312
Q + +
Sbjct: 240 RPDWQKRVAESE 251
Score = 85.7 bits (213), Expect = 3e-18
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 26/124 (20%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGG 490
E +T +AG +T ++ LT+S L+ Q + + A
Sbjct: 206 LPRERALSEAVT-----LLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALA---- 256
Query: 491 ELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGL 550
+E+LR+Y P L R R L + + GT + + Y
Sbjct: 257 ---------------AFQEALRLYPPAWILTRRLERPLLLG--EDRLPPGTTLVLSPYVT 299
Query: 551 HHDP 554
Sbjct: 300 QRLH 303
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 99.0 bits (247), Expect = 2e-22
Identities = 26/252 (10%), Positives = 69/252 (27%), Gaps = 27/252 (10%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIM--RNLFGLTGDEWRKMRNKMSP 119
+ + +E K D + + + + G+ G +
Sbjct: 45 NFICMTGAEAAKVFYDTDRFQRQNA---LPKRVQKSLFGVNAIQGMDGSAHIHRKMLFLS 101
Query: 120 TFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEIN 179
T K + LM + V+ +K + + + E + +
Sbjct: 102 LMTPPHQKRLAELMTEEWKAAVTRW-----EKADEVVLFEEAKEILCRVACYWAGVPL-- 154
Query: 180 ALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQN 239
+ E ++ + + ++ M+ R G + ++ ++
Sbjct: 155 ----KETEVKERADDFID--------MVDAFGAVGPR-HWKGRRARPRAEEWIEVMIEDA 201
Query: 240 LSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELA 299
+ + ++ M + D + + A + + S L FS L
Sbjct: 202 RAGLLKT--TSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALH 259
Query: 300 KNKSIQSTLRKE 311
++ + LR
Sbjct: 260 EHPKYKEWLRSG 271
Score = 88.6 bits (220), Expect = 5e-19
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 26/132 (19%)
Query: 427 DFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKA 486
D R ELI + S L FS L ++ + LR
Sbjct: 224 DGSQLDSRMAAIELI------NVLRPIVAISYFLVFSALALHEHPKYKEWLRSG------ 271
Query: 487 KYGGELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIP 546
+ ++E R Y L + + + + KGT + +
Sbjct: 272 ------------NSREREMFVQEVRRYYPFGPFLGALVKKDFVW--NNCEFKKGTSVLLD 317
Query: 547 LYGLHHDPEIYP 558
LYG +HDP ++
Sbjct: 318 LYGTNHDPRLWD 329
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 92.4 bits (230), Expect = 4e-20
Identities = 34/288 (11%), Positives = 86/288 (29%), Gaps = 41/288 (14%)
Query: 58 FAVIPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLT----GDEWRKM 113
A + + VL DS VL + +M+ +F + E K
Sbjct: 59 AAGLYITVLLDSNCYDAVLSD----VASLDQTSYAQ---VLMKRIFNMILPSHNPESEKK 111
Query: 114 RNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTV 173
R +M F + ++ M++ L + + E+ + +L S +
Sbjct: 112 RAEM--HFQGASLTQLSNSMQN-------NLRLLMTPSEMGLKTSEWKKDGLFNLCYSLL 162
Query: 174 FGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKF-LSGLMMDRKNVQFF 232
F + + ++ + L+P + + ++ ++
Sbjct: 163 FKTGYLTVFGAENNNSAALTQI------YEEFRRFDKLLPKLARTTVNKEE--KQIASAA 214
Query: 233 LDLVHQNLS-YREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVL 291
+ + + L+ + ++ ++ +++ I E+ L +
Sbjct: 215 REKLWKWLTPSGLDRKPREQSWLGSYVKQLQDE-GIDAEMQRRAMLLQLWVTQGNAGPAA 273
Query: 292 TFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESLI-----LDWII 334
+ + L + +R+EI G L E D ++
Sbjct: 274 FWVMGYLLTHPEALRAVREEIQG-----GKHLRLEERQKNTPVFDSVL 316
Score = 84.3 bits (209), Expect = 2e-17
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 25/153 (16%)
Query: 416 DSEIIKHVLIKDFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQS 475
+ + + D I E+ + + + + L +
Sbjct: 233 EQSWLGSYV----KQLQDEGIDAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALR 288
Query: 476 TLRKEINDTKAKYGGELTYESYDEMPLLDRVIKESLRMYTPLG---------QLDRITGR 526
+R+EI K E P+ D V+ E+LR+ ++ G+
Sbjct: 289 AVREEIQGGK----HLRLEERQKNTPVFDSVLWETLRLTAAALITRDVTQDKKICLSNGQ 344
Query: 527 SYQLPNTDIVIDKGTKMFI-PLYGLHHDPEIYP 558
Y L +G ++ + P DP+I+
Sbjct: 345 EYHLR-------RGDRLCVFPFISPQMDPQIHQ 370
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 80.5 bits (199), Expect = 2e-16
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 31/132 (23%)
Query: 432 TDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGE 491
D+ + A V + + +TF + L I++ L
Sbjct: 222 RHDDLLSPHVAAVELVNVLRPTVAIAVYITFVAHALQTCSGIRAALV------------- 268
Query: 492 LTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRS-----YQLPNTDIVIDKGTKMFIP 546
+ + ++E R Y + + P +G ++ +
Sbjct: 269 ------QQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFP-------EGRQVVLD 315
Query: 547 LYGLHHDPEIYP 558
LYG +HD +
Sbjct: 316 LYGSNHDAATWA 327
Score = 66.3 bits (162), Expect = 8e-12
Identities = 31/263 (11%), Positives = 74/263 (28%), Gaps = 37/263 (14%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFG------LTGDEWRKMRN 115
L ++ + + F I + L G L G+ R +
Sbjct: 44 KTNCLKGAKAAEIF-------YDTTRFEREGAMPVAIQKTLLGQGGVQGLDGETHRHRKQ 96
Query: 116 KMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFG 175
T +++ + L E+ R V + I + L +T + +
Sbjct: 97 MFMGLMTPERVRALAQLFEAEWRRAVPGW-----TRKGEIVFYDELHEPLTRAVCAWAGV 151
Query: 176 MEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDL 235
PD E + E+ + P R+ V +
Sbjct: 152 PL------PDDEAGNRAGEL------RALFDAAGSASPRHLWSRLA----RRRVDAWAKR 195
Query: 236 VHQNLSYREQNNIKRNDFINIMMELRKNDPD-ITEELITAQCFLFFIAGFDTSSTVLTFS 294
+ + + R + + + ++ D + + A + + + +TF
Sbjct: 196 IIEGI--RAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAVYITFV 253
Query: 295 LYELAKNKSIQSTLRKEINDTKA 317
+ L I++ L ++ + +
Sbjct: 254 AHALQTCSGIRAALVQQPDYAEL 276
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 74.9 bits (185), Expect = 2e-14
Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 29/270 (10%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPT- 120
+VL +++K L+ ++F DR + L G W R +++
Sbjct: 59 STVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDHR-RLAVNS 117
Query: 121 ---FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMTDLIGSTVFGM 176
F G+ ES I D K+ + ++++ +FG
Sbjct: 118 FRYFGYGQ-----KSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFG- 171
Query: 177 EINALENPDCEFRKVSKEMLNPKLRF--RIVMILVLLIPNIRKFLSGLMMD-RKNVQ--- 230
D +F+ + E+ + + + L P I G +N
Sbjct: 172 --ERFTYEDTDFQHM-IELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVY 228
Query: 231 -FFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD--ITEELITAQCFLFFIAGF 284
F L+ + R+ + F++ M+ KNDP ++E + IAG
Sbjct: 229 DFLSRLIEKASVNRKPQLPQ--HFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGT 286
Query: 285 DTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
+T++ VL +++ +A +IQ ++KEI+
Sbjct: 287 ETTTNVLRWAILFMALYPNIQGQVQKEIDL 316
Score = 56.0 bits (136), Expect = 2e-08
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
++E + IAG +T++ VL +++ +A +IQ ++KEI D G+ +++
Sbjct: 270 SKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEI-DLIMGPNGKPSWDD 328
Query: 497 YDEMPLLDRVIKESLRMYT--PLGQLDRITG-----RSYQLPNTDIVIDKGTKMFIPLYG 549
+MP + V+ E LR PLG + T R Y +P KGT + LY
Sbjct: 329 KCKMPYTEAVLHEVLRFCNIVPLG-IFHATSEDAVVRGYSIP-------KGTTVITNLYS 380
Query: 550 LHHDPEIYPT 559
+H D + +
Sbjct: 381 VHFDEKYWRD 390
Score = 28.7 bits (65), Expect = 6.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 408 TTPVLVLADSEIIKHVLIKDFDVFTDR 434
+VL +++K L+ ++F DR
Sbjct: 57 GISTVVLNGYDVVKECLVHQSEIFADR 83
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 72.2 bits (178), Expect = 2e-13
Identities = 46/282 (16%), Positives = 98/282 (34%), Gaps = 48/282 (17%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNL--------FGLTGDEWRKM 113
+++ ++ K VLIK F+ R + F +G W+
Sbjct: 54 TTVIVGHHQLAKEVLIKKGKDFSGRPQM-------ATLDIASNNRKGIAFADSGAHWQLH 106
Query: 114 RNKMSPT----FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMTDL 168
R +++ F G +E +S L + N +SID+ + +T++
Sbjct: 107 R-RLAMATFALFKDGD-----QKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNV 160
Query: 169 IGSTVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKN 228
I F + +N D E + + LV L+P ++ F + + K+
Sbjct: 161 ISLICFN---TSYKNGDPELNVIQN-YNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKS 216
Query: 229 VQ-----FFLDLVHQNLSYREQNNIKRNDFI----NIMMELRKNDPD-------ITEELI 272
++ ++I + + M + +++ I
Sbjct: 217 HVKIRNDLLNKILENYKEKFRSDSIT--NMLDTLMQAKMNSDNGNAGPDQDSELLSDNHI 274
Query: 273 TAQCFLFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
F AG +T+++V+ ++L L N ++ L +EI+
Sbjct: 275 LTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQ 316
Score = 59.1 bits (144), Expect = 2e-09
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 436 ITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYE 495
+++ I F AG +T+++V+ ++L L N ++ L +EI D + T
Sbjct: 269 LSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEI-DQNVGFSRTPTIS 327
Query: 496 SYDEMPLLDRVIKESLRMYT--PLGQLDRITGRSYQLP---NTDIV-----IDKGTKMFI 545
+ + LL+ I+E LR+ P+ +P N D +DKGT++ I
Sbjct: 328 DRNRLLLLEATIREVLRLRPVAPML-----------IPHKANVDSSIGEFAVDKGTEVII 376
Query: 546 PLYGLHHDPEIYPT 559
L+ LHH+ + +
Sbjct: 377 NLWALHHNEKEWHQ 390
Score = 29.0 bits (66), Expect = 4.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 408 TTPVLVLADSEIIKHVLIKDFDVFTDR 434
T +++ ++ K VLIK F+ R
Sbjct: 52 TKTTVIVGHHQLAKEVLIKKGKDFSGR 78
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 71.8 bits (177), Expect = 2e-13
Identities = 57/280 (20%), Positives = 105/280 (37%), Gaps = 42/280 (15%)
Query: 58 FAVIPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLF---GLT---GDEWR 111
PV+VL ++ I+ L+ + F+ RG ++ +F G+ G+ WR
Sbjct: 51 LGSRPVVVLCGTDAIREALVDQAEAFSGRGKI-------AVVDPIFQGYGVIFANGERWR 103
Query: 112 KMRNKMSPT----FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMT 166
+R + S F GK +E + L + + K +D +
Sbjct: 104 ALR-RFSLATMRDFGMGK-----RSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITS 157
Query: 167 DLIGSTVFGMEINALENPDCEFRKVSKEMLNPKLRF--RIVMILVLLIPNIRKFLSGLMM 224
++I S VFG + D F ++ ++ + L K G
Sbjct: 158 NIICSIVFG---KRFDYKDPVFLRL-LDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHR 213
Query: 225 D-RKNVQ----FFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD--ITEELITA 274
+N+Q F V ++ + + +N + DFI+ + ME K+DP + +
Sbjct: 214 QIYRNLQEINTFIGQSVEKHRATLDPSNPR--DFIDVYLLRMEKDKSDPSSEFHHQNLIL 271
Query: 275 QCFLFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
F AG +T+ST L + + K + ++KEI
Sbjct: 272 TVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQ 311
Score = 54.9 bits (133), Expect = 4e-08
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 14/134 (10%)
Query: 432 TDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGE 491
+ + + F AG +T+ST L + + K + ++KEI +
Sbjct: 260 PSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEI-EQVIGSHRP 318
Query: 492 LTYESYDEMPLLDRVIKESLRMYT--PLGQLDRITG----RSYQLPNTDIVIDKGTKMFI 545
+ +MP D VI E R+ P G +T R Y +P K T++F
Sbjct: 319 PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIP-------KNTEVFP 371
Query: 546 PLYGLHHDPEIYPT 559
L HDP + T
Sbjct: 372 VLSSALHDPRYFET 385
Score = 29.5 bits (67), Expect = 3.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 404 IFT---TTTPVLVLADSEIIKHVLIKDFDVFTDR 434
+FT + PV+VL ++ I+ L+ + F+ R
Sbjct: 46 VFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGR 79
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 71.8 bits (177), Expect = 2e-13
Identities = 57/276 (20%), Positives = 109/276 (39%), Gaps = 42/276 (15%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLF---GLT---GDEWRKMRN 115
V+VL + ++ L+ + F+ RG +F G+ G+ +++R
Sbjct: 55 RVVVLCGHDAVREALVDQAEEFSGRGEQ-------ATFDWVFKGYGVVFSNGERAKQLR- 106
Query: 116 KMSPT----FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMTDLIG 170
+ S F GK +E + L + +ID +L R ++++I
Sbjct: 107 RFSIATLRDFGVGK-----RGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVIS 161
Query: 171 STVFGMEINALENPDCEFRKVSKEMLNPKLRF--RIVMILVLLIPNIRKFLSGLMMD-RK 227
S VFG + + D EF + M+ +F L + ++ K L G +
Sbjct: 162 SIVFG---DRFDYKDKEFLSL-LRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQ 217
Query: 228 NVQ----FFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD--ITEELITAQCFL 278
+Q F V N + N+ + DFI+ I M+ + +P+ + +
Sbjct: 218 LLQGLEDFIAKKVEHNQRTLDPNSPR--DFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLN 275
Query: 279 FFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
FI G +T ST L + L K+ +++ + +EI+
Sbjct: 276 LFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDR 311
Score = 54.1 bits (131), Expect = 7e-08
Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 38/205 (18%)
Query: 381 PTHFVYQDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHVLIKDFDVFTDRDI---- 436
T +Y+ +K L P F + ++ + + D + RD
Sbjct: 193 STGQLYEMFSSVMKH-LPGPQQQAFQLLQGLEDFIAKKVEHN--QRTLDPNSPRDFIDSF 249
Query: 437 ---------------TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEI 481
+ + FI G +T ST L + L K+ +++ + +EI
Sbjct: 250 LIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEI 309
Query: 482 NDTKAKYGGELTYESYDEMPLLDRVIKESLRMYT--PLGQLDRITG-----RSYQLPNTD 534
D + +E +MP ++ VI E R P+ L R R + LP
Sbjct: 310 -DRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMS-LARRVKKDTKFRDFFLP--- 364
Query: 535 IVIDKGTKMFIPLYGLHHDPEIYPT 559
KGT+++ L + DP +
Sbjct: 365 ----KGTEVYPMLGSVLRDPSFFSN 385
Score = 29.1 bits (66), Expect = 4.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 408 TTPVLVLADSEIIKHVLIKDFDVFTDR 434
V+VL + ++ L+ + F+ R
Sbjct: 53 PRRVVVLCGHDAVREALVDQAEEFSGR 79
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 71.4 bits (176), Expect = 2e-13
Identities = 56/275 (20%), Positives = 100/275 (36%), Gaps = 41/275 (14%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGL-----TGDEWRKMRNK 116
++V+ + +K L+ D F+ RG P G W+ +R +
Sbjct: 55 RMVVMHGYKAVKEALLDYKDEFSGRGDL-------PAFHAHRDRGIIFNNGPTWKDIR-R 106
Query: 117 MSPT----FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMTDLIGS 171
S T + GK ES + L + + K + D +G ++I
Sbjct: 107 FSLTTLRNYGMGK-----QGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIAD 161
Query: 172 TVFGMEINALENPDCEFRKVSKEMLNPKLRF--RIVMILVLLIPNIRKFLSGLMMD-RKN 228
+F + D +F ++ + N + L P+ +L G KN
Sbjct: 162 ILFR---KHFDYNDEKFLRL-MYLFNENFHLLSTPWLQLYNNFPSFLHYLPGSHRKVIKN 217
Query: 229 VQ----FFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD--ITEELITAQCFLF 279
V + + V ++ + N + D + + ME K+ + T + IT
Sbjct: 218 VAEVKEYVSERVKEHHQSLDPNCPR--DLTDCLLVEMEKEKHSAERLYTMDGITVTVADL 275
Query: 280 FIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
F AG +T+ST L + L L K I+ L +EI+
Sbjct: 276 FFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDR 310
Score = 54.5 bits (132), Expect = 5e-08
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
T + IT F AG +T+ST L + L L K I+ L +EI D +
Sbjct: 264 TMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEI-DRVIGPSRIPAIKD 322
Query: 497 YDEMPLLDRVIKESLRMYT--PLGQLDRITG-----RSYQLPNTDIVIDKGTKMFIPLYG 549
EMP +D V+ E R T P L R Y +P KGT + L
Sbjct: 323 RQEMPYMDAVVHEIQRFITLVPSN-LPHEATRDTIFRGYLIP-------KGTVVVPTLDS 374
Query: 550 LHHDPEIYPT 559
+ +D + +P
Sbjct: 375 VLYDNQEFPD 384
Score = 29.0 bits (66), Expect = 4.1
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 24/91 (26%)
Query: 353 QYWKSRN-------VPFLR--PTFPFGNVYEAITMQRPTHFVYQDIYMEIKFGLKSPFAG 403
+ +P + N+ ++ T + ++ + G
Sbjct: 4 KTSSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQR---FGPVFT-LYVG------- 52
Query: 404 IFTTTTPVLVLADSEIIKHVLIKDFDVFTDR 434
+ ++V+ + +K L+ D F+ R
Sbjct: 53 ----SQRMVVMHGYKAVKEALLDYKDEFSGR 79
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 71.0 bits (175), Expect = 3e-13
Identities = 46/273 (16%), Positives = 94/273 (34%), Gaps = 32/273 (11%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRG---FFEANETDEPIMRNLFGLTGDEWRKMRNKMS 118
PV+VL ++ L+ + DR + G WR+ R + S
Sbjct: 55 PVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQR-RFS 113
Query: 119 PT----FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMTDLIGSTV 173
+ GK +E + L + L + ++++I S
Sbjct: 114 VSTLRNLGLGK-----KSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLT 168
Query: 174 FGMEINALENPDCEFRKVSKEMLNPKLRF--RIVMILVLLIPNIRKFLSGLMMDRKNVQF 231
G E D F ++ ++ L+ + ++ +P + + + +
Sbjct: 169 CG---RRFEYDDPRFLRL-LDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKA 224
Query: 232 FLDLVHQNL-----SYREQNNIKRNDFIN---IMMELRKNDPD--ITEELITAQCFLFFI 281
FL + + L ++ + D ME K +P+ +E + F
Sbjct: 225 FLTQLDELLTEHRMTWDPAQPPR--DLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFS 282
Query: 282 AGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
AG T+ST L + L + + +Q +++EI+D
Sbjct: 283 AGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDD 315
Score = 55.3 bits (134), Expect = 3e-08
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
+E + F AG T+ST L + L + + +Q +++EI D
Sbjct: 269 NDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEI-DDVIGQVRRPEMGD 327
Query: 497 YDEMPLLDRVIKESLRMYT--PLGQLDRITG-----RSYQLPNTDIVIDKGTKMFIPLYG 549
MP VI E R PLG + +T + +++P KGT + L
Sbjct: 328 QAHMPYTTAVIHEVQRFGDIVPLG-VTHMTSRDIEVQGFRIP-------KGTTLITNLSS 379
Query: 550 LHHDPEIYPT 559
+ D ++
Sbjct: 380 VLKDEAVWEK 389
Score = 29.4 bits (67), Expect = 3.1
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 18/88 (20%)
Query: 353 QYWKSRNVPFLRPTFPF-GNVYEAITMQRPTHF-----VYQDIYMEIKFGLKSPFAGIFT 406
+ +P P GN+ P F + D++ ++
Sbjct: 4 KTSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFS-LQLA---------- 52
Query: 407 TTTPVLVLADSEIIKHVLIKDFDVFTDR 434
TPV+VL ++ L+ + DR
Sbjct: 53 -WTPVVVLNGLAAVREALVTHGEDTADR 79
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 70.7 bits (174), Expect = 4e-13
Identities = 39/272 (14%), Positives = 97/272 (35%), Gaps = 36/272 (13%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNL--------FGLTGDEWRKM 113
V+VL I+ +I+ + F R P + + G W+
Sbjct: 68 EVVVLNSKRTIEEAMIRKWVDFAGRPQI-------PSYKLVSQRCQDISLGDYSLLWKAH 120
Query: 114 RNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTV 173
+ G M P ++ + + + +++ +I
Sbjct: 121 KKLTRSALLLGTRSSMEPWVDQLTQEFCERMRVQ---AGAPVTIQKEFSLLTCSIICYLT 177
Query: 174 FGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKF-LSGLMMDRKNVQFF 232
FG N + F ++++ K + ++ ++P +R F GL ++ ++
Sbjct: 178 FG---NKEDTLVHAFHDCVQDLM--KTWDHWSIQILDMVPFLRFFPNPGLWRLKQAIENR 232
Query: 233 LDLVHQNLSYREQ----NNIKRNDFINIM---MELRKNDPD---ITEELITAQCFLFFIA 282
+V + L ++ + D + M + ++ + + E + FI
Sbjct: 233 DHMVEKQLRRHKESMVAGQWR--DMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIG 290
Query: 283 GFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
G +T+++ L++++ L + IQ L++E++
Sbjct: 291 GTETTASTLSWAVAFLLHHPEIQRRLQEELDR 322
Score = 61.1 bits (149), Expect = 4e-10
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 436 ITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDT--KAKYGGELT 493
+ E + FI G +T+++ L++++ L + IQ L++E++ +T
Sbjct: 275 LLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVT 334
Query: 494 YESYDEMPLLDRVIKESLRMYT--PLGQLDRITGRSYQLPNTDI---VIDKGTKMFIPLY 548
Y+ +PLL+ I E LR+ PL L T R + I I +G + L
Sbjct: 335 YKDRARLPLLNATIAEVLRLRPVVPLA-LPHRTTR-----PSSIFGYDIPEGMVVIPNLQ 388
Query: 549 GLHHDPEIYPT 559
G H D ++
Sbjct: 389 GAHLDETVWEQ 399
Score = 44.9 bits (107), Expect = 5e-05
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 20/107 (18%)
Query: 333 IILSSIVILLYYLKTIFISYQYWKSRNVPFLRPTFPFGNVYEAITMQRPTHF-----VYQ 387
++L+ +++LL L + + WK RN+ + P H
Sbjct: 1 MVLAGLLLLLTLLAGAHLLWGRWKLRNLHLPPL---VPGFLHLLQPNLPIHLLSLTQKLG 57
Query: 388 DIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHVLIKDFDVFTDR 434
+Y ++ G V+VL I+ +I+ + F R
Sbjct: 58 PVYR-LRLG-----------LQEVVVLNSKRTIEEAMIRKWVDFAGR 92
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 69.5 bits (171), Expect = 1e-12
Identities = 50/281 (17%), Positives = 94/281 (33%), Gaps = 43/281 (15%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLF---GLT-----GDEWRKM 113
PVLVL+ + I+ L++ D F R + LT G W
Sbjct: 60 PVLVLSRLDTIRQALVRQGDDFKGRPDL-------YTSTLITDGQSLTFSTDSGPVWAAR 112
Query: 114 RNKMSPT----FTSGK--IKEMFPLMESC----GRNVVSILTKYINKKNESIDVKEYLGR 163
R +++ F+ +E + ++S L + D +
Sbjct: 113 R-RLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQEL-MAGPGHFDPYNQVVV 170
Query: 164 YMTDLIGSTVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLM 223
+ ++IG+ FG E + K + + + P +R + +
Sbjct: 171 SVANVIGAMCFG---QHFPESSDEMLSLVK-NTHEFVETASSGNPLDFFPILRYLPNPAL 226
Query: 224 MDRKNVQ-----FFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD--ITEELIT 273
K F V ++ ++N+++ D + I +E I
Sbjct: 227 QRFKAFNQRFLWFLQKTVQEHYQDFDKNSVR--DITGALFKHSKKGPRASGNLIPQEKIV 284
Query: 274 AQCFLFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
F AGFDT +T +++SL L IQ ++KE++
Sbjct: 285 NLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDT 325
Score = 56.8 bits (138), Expect = 1e-08
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 436 ITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYE 495
I +E I F AGFDT +T +++SL L IQ ++KE+ DT
Sbjct: 278 IPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKEL-DTVIGRERRPRLS 336
Query: 496 SYDEMPLLDRVIKESLRMYT--PLGQLDRITGRSYQLP---NTDIV-----IDKGTKMFI 545
++P L+ I E+ R + P +P D I K +F+
Sbjct: 337 DRPQLPYLEAFILETFRHSSFLPFT-----------IPHSTTRDTTLNGFYIPKKCCVFV 385
Query: 546 PLYGLHHDPEIYPT 559
+ ++HDPE++
Sbjct: 386 NQWQVNHDPELWED 399
Score = 29.5 bits (67), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 408 TTPVLVLADSEIIKHVLIKDFDVFTDR 434
+TPVLVL+ + I+ L++ D F R
Sbjct: 58 STPVLVLSRLDTIRQALVRQGDDFKGR 84
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 67.6 bits (166), Expect = 4e-12
Identities = 62/275 (22%), Positives = 112/275 (40%), Gaps = 40/275 (14%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLF---GLT---GDEWRKMRN 115
P++VL E +K LI + F+ RG F P+ G+ G +W+++R
Sbjct: 56 PIVVLHGYEAVKEALIDLGEEFSGRGIF-------PLAERANRGFGIVFSNGKKWKEIR- 107
Query: 116 KMSPT----FTSGKIKEMFPLMESCGRNVVSILTKYINKKN-ESIDVKEYLGRYMTDLIG 170
+ S F GK +E + L + + K D LG ++I
Sbjct: 108 RFSLMTLRNFGMGK-----RSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVIC 162
Query: 171 STVFGMEINALENPDCEFRKVSKEML-NPKLRFRIVMILVLLIPNIRKFLSGLMMD-RKN 228
S +F + D +F + +++ N K+ + + I + G KN
Sbjct: 163 SIIFH---KRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKLLKN 219
Query: 229 VQ----FFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD--ITEELITAQCFLF 279
V + L+ V ++ + NN + DFI+ + ME K++ T E +
Sbjct: 220 VAFMKSYILEKVKEHQESMDMNNPQ--DFIDCFLMKMEKEKHNQPSEFTIESLENTAVDL 277
Query: 280 FIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
F AG +T+ST L ++L L K+ + + +++EI
Sbjct: 278 FGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIER 312
Score = 53.7 bits (130), Expect = 8e-08
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
T E + F AG +T+ST L ++L L K+ + + +++EI + +
Sbjct: 266 TIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEI-ERVIGRNRSPCMQD 324
Query: 497 YDEMPLLDRVIKESLRMYT--PLGQLDRITGRS-----YQLPNTDIVIDKGTKMFIPLYG 549
MP D V+ E R P L Y +P KGT + I L
Sbjct: 325 RSHMPYTDAVVHEVQRYIDLLPTS-LPHAVTCDIKFRNYLIP-------KGTTILISLTS 376
Query: 550 LHHDPEIYPT 559
+ HD + +P
Sbjct: 377 VLHDNKEFPN 386
Score = 28.7 bits (65), Expect = 5.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 408 TTPVLVLADSEIIKHVLIKDFDVFTDR 434
P++VL E +K LI + F+ R
Sbjct: 54 LKPIVVLHGYEAVKEALIDLGEEFSGR 80
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 65.3 bits (160), Expect = 2e-11
Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 53/288 (18%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNL-------FGLTGDEWRKMR 114
P++VL I L++ F DR F R + FG + W+ R
Sbjct: 53 PIVVLNGERAIHQALVQQGSAFADRPSF-------ASFRVVSGGRSMAFGHYSEHWKVQR 105
Query: 115 NKMSPTFTSGKIKEMFPLMESCGRNV--------VSILTKYINKKNE---SIDVKEYLGR 163
++ F + R V L + + + +D +
Sbjct: 106 R-----AAHSMMR-NFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVV 159
Query: 164 YMTDLIGSTVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIP-------NIR 216
+ +++ + FG + D EFR++ R LV ++P +R
Sbjct: 160 AVANVMSAVCFG---CRYSHDDPEFRELLS-HNEEFGRTVGAGSLVDVMPWLQYFPNPVR 215
Query: 217 KFLSGLMMDRKNV-QFFLDLVHQNLSYREQNNIKRNDFIN---IMMELRKNDPD------ 266
+N F LD ++ R D ++ + E +
Sbjct: 216 TVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPR-DMMDAFILSAEKKAAGDSHGGGAR 274
Query: 267 ITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 314
+ E + A F A DT ST L + L + +Q+ ++ E++
Sbjct: 275 LDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQ 322
Score = 56.4 bits (137), Expect = 1e-08
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
E + A F A DT ST L + L + +Q+ ++ E+ D
Sbjct: 276 DLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAEL-DQVVGRDRLPCMGD 334
Query: 497 YDEMPLLDRVIKESLRMYT--PLGQLDRITGRSYQLP---NTDIV-----IDKGTKMFIP 546
+P + + E++R + P+ +P + I K T +F+
Sbjct: 335 QPNLPYVLAFLYEAMRFSSFVPVT-----------IPHATTANTSVLGYHIPKDTVVFVN 383
Query: 547 LYGLHHDPEIYPT 559
+ ++HDP +P
Sbjct: 384 QWSVNHDPLKWPN 396
Score = 29.5 bits (67), Expect = 2.9
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 404 IFTT---TTPVLVLADSEIIKHVLIKDFDVFTDR 434
+F + P++VL I L++ F DR
Sbjct: 44 VFQIRLGSCPIVVLNGERAIHQALVQQGSAFADR 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 3e-10
Identities = 70/434 (16%), Positives = 126/434 (29%), Gaps = 175/434 (40%)
Query: 253 FIN-IMMELRKNDPDITEELITA------QCFLF------FIAGFDTSSTVLTFSLYELA 299
F+ + + + ++++ C+L A + EL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 300 KN-------------KSIQSTLRKEINDTKAK----YGG---------EL-----TYESL 328
KN K S L + + + A+ +GG EL TY L
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 329 ILDWIILSSIVIL-----------LY--------------------YLKTIFISY----- 352
+ D I S+ + ++ YL +I IS
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 353 ----QYWKSRNVPFLRP------------------------------TFPFGNVYEAITM 378
Y + + P +F F +V +AIT+
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITV 302
Query: 379 --------QR--PTHFVYQDIYME-IKFGLKSPFAGIFTTTTPVLV---LADSEIIKHVL 424
P + I + ++ P +P+L L ++ +V
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--------SPMLSISNLTQEQVQDYVN 354
Query: 425 IKDFDVFTDRDITEELI-TAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIND 483
+ + + + L+ A+ V ++G SLY L TLRK
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLV--VSGP-------PQSLYGL------NLTLRKA--- 396
Query: 484 TKAKYGGELTYESYDEMPLLDRVIKES---LRMYTP-----LGQ-LDRITGRSYQLPNTD 534
KA G + + +P +R +K S L + +P L D I L +
Sbjct: 397 -KAPSGLDQS-----RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD---LVKNN 447
Query: 535 IVIDKGTKMFIPLY 548
+ + + IP+Y
Sbjct: 448 VSFN-AKDIQIPVY 460
Score = 36.2 bits (83), Expect = 0.035
Identities = 81/561 (14%), Positives = 149/561 (26%), Gaps = 236/561 (42%)
Query: 10 RSISAVPLMH---EPK-PVPLMHEPKLSFQVRD-FNNS-------KKSDNYPS------- 50
R ++ L H E VP S Q+++ FN +D+ P+
Sbjct: 7 RPLT---LSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 51 RY--------NRQRCFAVIPVL----------VLADSEIIKHVLIKDFDVFTD------- 85
++ + VL L ++I H L D
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTK 120
Query: 86 ---RGFFEANE-TDEPIMRN----LF-----------------GLTGDEWRKMRN--KMS 118
+ + A P + LF G T D + ++R+ +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 119 PTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVK------------EYL----- 161
IK + R + + + +++ +YL
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 162 ----------GRYMTD--------------LIGSTVFGMEI---NALENPDC--EFRKVS 192
Y+ L G+T + A+ D F
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 193 KEMLNPKLRFRI------VMILVLLIPNIRKF------------LS--GLMMDRKNVQFF 232
++ + + F I L P+I + LS L ++ VQ +
Sbjct: 297 RKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL--TQEQVQDY 352
Query: 233 LDLVHQNLSYREQ-----NNIKRNDFI---------NIMMELRK----NDPDIT------ 268
++ + +L +Q N +N + + + LRK + D +
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 269 EELITAQCFLFFIAGF------DTSSTVLTFSLYELAKNK-SI-QSTLRKEINDTK---- 316
+L + FL + F S + +L KN S ++ + DT
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINK----DLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 317 -AKYGGELTYESLILDWIILSSIVILLYYLKTIFISYQYWKSRNVPFLRPTFPFGNVYEA 375
G ++ E ++ D II + W E
Sbjct: 468 LRVLSGSIS-ERIV-DCIIRLPV---------------KW------------------ET 492
Query: 376 ITMQRPTHFVYQDIYMEIKFG 396
T + TH + D FG
Sbjct: 493 TTQFKATHIL--D------FG 505
Score = 34.6 bits (79), Expect = 0.12
Identities = 56/309 (18%), Positives = 100/309 (32%), Gaps = 89/309 (28%)
Query: 59 AVIPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLF--GLTGDEWRKMRNK 116
++ + +A+++ + FF + + LF G+ E
Sbjct: 276 GLVTAVAIAETD-------------SWESFFVSVRK---AITVLFFIGVRCYEAYP-NTS 318
Query: 117 MSPTFT--SGKIKEMFP-LMESCGRNV-VSILTKYINKKNESIDVKEYLGRYMTDLI-GS 171
+ P+ S + E P M S N+ + Y+NK N + + + ++ L+ G+
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQV--EIS-LVNGA 374
Query: 172 TVF---GMEINALENPDCEFRKV-------------SKEMLNPKLRFRIVMILVLLIPNI 215
G +L + RK S+ L RF L + P
Sbjct: 375 KNLVVSG-PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-----LPVASP-- 426
Query: 216 RKFLSGLMMDRKNVQFFLDLVHQNLSYREQ-------NNIKRNDFINIMMELRKNDPDIT 268
F S L++ + DLV N+S+ + + +D LR I+
Sbjct: 427 --FHSHLLVPASD-LINKDLVKNNVSFNAKDIQIPVYDTFDGSD-------LRVLSGSIS 476
Query: 269 EEL---ITAQCFLFFIAGFDTSSTVLTF------SLYEL-AKNKS------IQ-STLRKE 311
E + I + ++ +L F L L +NK I TL
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Query: 312 INDTKAKYG 320
+D YG
Sbjct: 537 PDD---DYG 542
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 4e-06
Identities = 54/465 (11%), Positives = 118/465 (25%), Gaps = 135/465 (29%)
Query: 133 MESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEINALENPDCEFRKVS 192
+ ++++S+ + DV++ ++ E +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE------------------EIDHII 55
Query: 193 KEMLNPKLRFRIVMILVLLIPN--IRKFLSGLMMDRKNVQFFLDLVHQNLSYREQNNIKR 250
+ + +L ++KF+ + R N +F + +
Sbjct: 56 MSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 251 NDFINIMMELRKNDPDIT-------EELITAQCFLFFIAGFDTSSTVLTFSLYELAKNKS 303
+ + + ND + + L +L EL K+
Sbjct: 113 IEQRDRLY----NDNQVFAKYNVSRLQPYLK----------------LRQALLELRPAKN 152
Query: 304 I---------QSTLRKEINDTKAKYGGELTYESLILDWIILS---SIVILLYYLKTIFIS 351
+ ++ + D Y + + I W+ L S +L L+ +
Sbjct: 153 VLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQ 208
Query: 352 Y-QYWKSRNVPFLRPTFPFGNVYEAITMQRPTHFVYQDIYMEIKFGLKSPFAGIFTTTTP 410
W SR+ ++ + Y + L
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLLKSKPY---ENCL------------- 247
Query: 411 VLVLAD---SEIIKHVLIKDFDV-----FTDRD--ITEELITAQCFVFFI----AGFDTS 456
LVL + ++ F++ T R +T+ L A +
Sbjct: 248 -LVLLNVQNAKAWNA-----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 457 STVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESYDEMPLLDRVIKESLRMYTP 516
Y L + Q L +E+ T P +I ES+R
Sbjct: 302 EVKSLLLKY-L--DCRPQD-LPREVLTT---------------NPRRLSIIAESIRDG-- 340
Query: 517 LGQLDRITG-RSYQLPNTDIVIDKGTKMFIP--LYGLHHDPEIYP 558
L + +I+ + P + ++P
Sbjct: 341 ---LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 48.7 bits (115), Expect = 5e-06
Identities = 85/537 (15%), Positives = 150/537 (27%), Gaps = 140/537 (26%)
Query: 35 QVRDFNNSKKSDNYPSRYNRQRCFAVIPVLVLADSEIIKHVLIKDFDVFTDRGFFEANET 94
V+ F NY + + P ++ + L D VF N +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-----NVS 132
Query: 95 DEPIMRNLFGLTGDEWRKMRNKMSPT---FTSGKIKEMFPLMESCGRNVVSILTKYINKK 151
L R+ ++ P G + G+ V++ K
Sbjct: 133 RLQPYLKL--------RQALLELRPAKNVLIDG--------VLGSGKTWVALDVCLSYKV 176
Query: 152 NESIDVKEY---LGRYMTDLIGSTVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMIL 208
+D K + L + TV M L D + S N KLR
Sbjct: 177 QCKMDFKIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR------- 226
Query: 209 VLLIPNIRKFLSGLMMDRKNVQFFLDLVHQNLSYREQNNIKRNDFIN-------IMMELR 261
I +I+ L L+ + L L N++ N I++ R
Sbjct: 227 ---IHSIQAELRRLLKSKPYENCLLVL----------LNVQNAKAWNAFNLSCKILLTTR 273
Query: 262 KNDPDITEELITAQCFLFFI----AGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKA 317
+T+ L A + Y L + Q L +E
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-L--DCRPQD-LPRE-----V 322
Query: 318 KYGGELTYESLILDWIILSSIVILLYYLKTIFISYQYWKSRNVPFLRPTFPFGNVYEA-I 376
LS I ++ ++ WK N L + E+ +
Sbjct: 323 LTTNPR----------RLSIIAES---IRDGLATWDNWKHVNCDKLT------TIIESSL 363
Query: 377 TMQRPTHFVYQDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHVLI---KDFDVFTD 433
+ P Y+ ++ + +F P + I +L D
Sbjct: 364 NVLEPA--EYRKMFDRL---------SVF----P----PSAHIPTILLSLIWFDVIKSDV 404
Query: 434 RDITEELITAQCFVFFIAGFDTSSTVLTFSLY-ELAKNKSIQSTLRKEINDTKAKYGGEL 492
+ +L + ST+ S+Y EL + L + I D Y
Sbjct: 405 MVVVNKLHKYSL----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPK 457
Query: 493 TYESYDEMPL-LDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLY 548
T++S D +P LD+ Y+ +G + L N + + +F ++
Sbjct: 458 TFDSDDLIPPYLDQYF------YSHIG---------HHLKNIE--HPERMTLFRMVF 497
Score = 31.7 bits (71), Expect = 0.78
Identities = 49/311 (15%), Positives = 87/311 (27%), Gaps = 100/311 (32%)
Query: 36 VRDFNNSKKSDNYPSRYNRQRCFAVIPVLVLA-DSEIIKHVLIKDFDVFTDRGFFEANET 94
+RD DN+ N + +I + + + + VF
Sbjct: 337 IRDGLA--TWDNWK-HVNCDKLTTIIESSLNVLEPAEYRK-MFDRLSVFPP--------- 383
Query: 95 DEPIMRNLFGLTGDEWRKM-------------------RNKMSPTFT--------SGKIK 127
I L L W + + T + K++
Sbjct: 384 SAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 128 EMFPLMESCGRNVVSILTKY-INKKNESIDVK---------EYLGRYMTDLIGSTVFGME 177
+ L S I+ Y I K +S D+ ++G ++
Sbjct: 441 NEYALHRS-------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL----------KN 483
Query: 178 INALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVH 237
I E FR V L+ RF + + + L+ +
Sbjct: 484 IEHPERMT-LFRMV---FLD--FRF------------LEQKIRHDSTAWNASGSILNTLQ 525
Query: 238 QNLSYREQNNIKRND--FINIMMELRKNDPDITEELITAQCF-LFFIAGFDTSSTVLTFS 294
Q Y+ I ND + ++ + P I E LI ++ L IA +
Sbjct: 526 QLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI---- 579
Query: 295 LYELAKNKSIQ 305
+E A +K +Q
Sbjct: 580 -FEEA-HKQVQ 588
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 44.2 bits (105), Expect = 8e-05
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
I + + + G DT L+F + LA++ + + LR
Sbjct: 237 GERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELR-------------- 282
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+ L R +E R P+ R+ + + + + +G + +P
Sbjct: 283 -----SDPLKLMRGAEEMFR-RFPVVSEARMVAKDQEY--KGVFLKRGDMILLPTALHGL 334
Query: 553 DPEIYP 558
D P
Sbjct: 335 DDAANP 340
Score = 35.8 bits (83), Expect = 0.034
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D I +M+ N I + L + G DT L+F + LA++
Sbjct: 223 GDDLITLMVNSEINGERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARH 274
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 43.4 bits (103), Expect = 2e-04
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 22/126 (17%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
R T + C G DT + ++ LA++ Q LR
Sbjct: 216 GRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLR-------------- 261
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+ L+ E +R P + R + I KG +++P +
Sbjct: 262 -----ERPDLIPAAADELMR-RYPTVAVSRNAVADVDA--DGVTIRKGDLVYLPSVLHNL 313
Query: 553 DPEIYP 558
DP +
Sbjct: 314 DPASFE 319
Score = 34.9 bits (81), Expect = 0.063
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D + ++ T + C G DT + ++ LA++
Sbjct: 202 GDDLFSRILSEPVGGRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARH 253
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 43.1 bits (102), Expect = 2e-04
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 22/126 (17%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
R IT + C + + G DT L+FS+ LAK+ + L
Sbjct: 231 GRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELI-------------- 276
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+ + +E LR ++ + RI Y+ + + KG ++ +P
Sbjct: 277 -----ERPERIPAACEELLRRFSLV-ADGRILTSDYEF--HGVQLKKGDQILLPQMLSGL 328
Query: 553 DPEIYP 558
D
Sbjct: 329 DERENA 334
Score = 36.1 bits (84), Expect = 0.024
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
D I+I+ + N IT + C L + G DT L+FS+ LAK+
Sbjct: 217 GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKS 268
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 41.8 bits (99), Expect = 4e-04
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+ITE A VF+ G ++ + A+ + + R
Sbjct: 215 AGEITESEAIATILVFYAVGHMAIGYLIASGIELFARRPEVFTAFR-------------- 260
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
++ +I E +RM P R ++ ++I+ G+ + + +
Sbjct: 261 -----NDESARAAIINEMVRMDPPQLSFLRFPTEDVEI--GGVLIEAGSPIRFMIGAANR 313
Query: 553 DPEIYP 558
DPE++
Sbjct: 314 DPEVFD 319
Score = 29.9 bits (68), Expect = 2.0
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 264 DPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+ITE A +F+ G ++ + A+
Sbjct: 215 AGEITESEAIATILVFYAVGHMAIGYLIASGIELFARR 252
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 41.9 bits (99), Expect = 4e-04
Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 22/126 (17%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+ + ++ + + G DT L F + L+++ + +R
Sbjct: 238 GKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMR-------------- 283
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
E L R ++E R + + R + ++ +G + +P
Sbjct: 284 -----REPLKLQRGVEELFRRFAVV-SDARYVVSDMEF--HGTMLKEGDLILLPTALHGL 335
Query: 553 DPEIYP 558
D +
Sbjct: 336 DDRHHD 341
Score = 35.7 bits (83), Expect = 0.037
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
D I ++ + + + ++ L + G DT L F + L+++
Sbjct: 224 GTDLITRILNVEIDGKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRH 275
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 438 EELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESY 497
+E+I A C + IAG +T+ ++ + + + + L
Sbjct: 244 DEII-ATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALA------------------- 283
Query: 498 DEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEIY 557
+ VI+E++R P+ + R G + + KG M + L H DP I
Sbjct: 284 ADGSRASAVIEETMRYDPPVQLVSRYAGDDLTI--GTHTVPKGDTMLLLLAAAHRDPTIV 341
Query: 558 P 558
Sbjct: 342 G 342
Score = 30.3 bits (69), Expect = 1.8
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
D ++ ++ + ++ +TE+ I A C L IAG +T+ ++ + + +
Sbjct: 224 GEDLMSGLVAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRT 275
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 39.1 bits (92), Expect = 0.003
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 438 EELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESY 497
EE + C + IAG +T+ +++ S+ L ++ LR
Sbjct: 222 EEAA-STCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLR------------------- 261
Query: 498 DEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEIY 557
+ L+ ++E LR +P R+ + + I +G ++++ L + DP I+
Sbjct: 262 ENPDLIGTAVEECLRYESPTQMTARVASEDIDI--CGVTIRQGEQVYLLLGAANRDPSIF 319
Query: 558 P 558
Sbjct: 320 T 320
Score = 28.4 bits (64), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 269 EELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
EE + C L IAG +T+ +++ S+ L ++
Sbjct: 222 EEAA-STCILLAIAGHETTVNLISNSVLCLLQH 253
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 21/122 (17%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
+++ + + + I G +T+ L+ +L +N+ L+
Sbjct: 216 SDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQ------------------ 257
Query: 497 YDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEI 556
+ LL I+E LR P+ + R+ + + G KM + + D +
Sbjct: 258 -RDPSLLPGAIEEMLRWTAPVKNMCRVLTADTEF--HGTALCAGEKMMLLFESANFDEAV 314
Query: 557 YP 558
+
Sbjct: 315 FC 316
Score = 29.5 bits (67), Expect = 3.1
Identities = 8/52 (15%), Positives = 26/52 (50%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D +++++ + ++++ + + L I G +T+ L+ +L +N
Sbjct: 198 TDDLVSVLVSSEVDGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRN 249
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 38.4 bits (90), Expect = 0.005
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 21/127 (16%)
Query: 432 TDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGE 491
TD D+T + + C I G +T+ +T +++ LA + + LR
Sbjct: 235 TDDDLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALR------------- 281
Query: 492 LTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLH 551
D +D V++E LR +P + R+T + + GT + L +
Sbjct: 282 ------DGSADVDTVVEEVLRWTSPAMHVLRVTTADVTI--NGRDLPSGTPVVAWLPAAN 333
Query: 552 HDPEIYP 558
DP +
Sbjct: 334 RDPAEFD 340
Score = 29.2 bits (66), Expect = 3.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 263 NDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
D D+T + + C I G +T+ +T +++ LA
Sbjct: 235 TDDDLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATV 273
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 38.4 bits (90), Expect = 0.005
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
++E+ + + + G D ++ L+ + LA + ++ L
Sbjct: 214 GESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLI-------------- 259
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
L+ + E LR Y P + R+ + + DI + G +
Sbjct: 260 -----AHPELIPNAVDELLRFYGPA-MVGRLVTQEVTV--GDITMKPGQTAMLWFPIASR 311
Query: 553 DPEIYP 558
D +
Sbjct: 312 DRSAFD 317
Score = 30.3 bits (69), Expect = 1.9
Identities = 8/52 (15%), Positives = 25/52 (48%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
ND ++ ++ + + ++E+ + + + G D ++ L+ + LA +
Sbjct: 200 GNDIMSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWD 251
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 38.1 bits (89), Expect = 0.006
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
++++ I A +A + + L +Y L N + +
Sbjct: 251 GMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVL-------------- 296
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+ L+ R I E+LR P+ + R + + + I K T +F + +
Sbjct: 297 -----ADRSLVPRAIAETLRYKPPVQLIPRQLSQDTVVG--GMEIKKDTIVFCMIGAANR 349
Query: 553 DPEIYP 558
DPE +
Sbjct: 350 DPEAFE 355
Score = 31.1 bits (71), Expect = 0.90
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D I+I+ ++++ I A +A + + L +Y L N
Sbjct: 237 GSDLISILCTSEYEGMALSDKDILALILNVLLAATEPADKTLALMIYHLLNN 288
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 37.6 bits (88), Expect = 0.008
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+IT E AG DT+ + ++Y LA+ + LR
Sbjct: 233 TGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFPDEFARLR-------------- 278
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+ L +E++R +P+ R T R +L I +G K+ + L +
Sbjct: 279 -----ADPSLARNAFEEAVRFESPVQTFFRTTTRDVELA--GATIGEGEKVLMFLGSANR 331
Query: 553 DPEIYP 558
DP +
Sbjct: 332 DPRRWD 337
Score = 29.9 bits (68), Expect = 2.1
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 14/64 (21%)
Query: 252 DFINIMMELRKNDPDITEELITAQ--------------CFLFFIAGFDTSSTVLTFSLYE 297
++ + P I A AG DT+ + ++Y
Sbjct: 207 AYVAEQCQRPNLAPGGFGACIHAFSDTGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYC 266
Query: 298 LAKN 301
LA+
Sbjct: 267 LARF 270
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 37.6 bits (88), Expect = 0.009
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 22/121 (18%)
Query: 438 EELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESY 497
E++ + F G +T ++ + ++ L + LR
Sbjct: 221 NEIV-STVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLR------------------- 260
Query: 498 DEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEIY 557
LL + ++E LR + R +L + + + + + DP Y
Sbjct: 261 RRPDLLAQAVEECLRYDPSVQSNTRQLDVDVEL--RGRRLRRDDVVVVLAGAANRDPRRY 318
Query: 558 P 558
Sbjct: 319 D 319
Score = 28.3 bits (64), Expect = 7.4
Identities = 5/33 (15%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 269 EELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
E++ + F G +T ++ + ++ L +
Sbjct: 221 NEIV-STVVTFIFTGHETVASQVGNAVLSLLAH 252
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 37.3 bits (87), Expect = 0.010
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
I A F G DT + +L S+ L + + L
Sbjct: 236 GTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLL------------------ 277
Query: 497 YDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEI 556
D+ + ++E LR+ +P+ L R T R + D I G ++ + + D
Sbjct: 278 -DDPEGIPDAVEELLRLTSPVQGLARTTTRDVTIG--DTTIPAGRRVLLLYGSANRDERQ 334
Query: 557 YPT 559
Y
Sbjct: 335 YGP 337
Score = 28.4 bits (64), Expect = 7.6
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 268 TEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
I A F G DT + +L S+ L +
Sbjct: 236 GTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRR 269
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 36.9 bits (86), Expect = 0.016
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
+ ++ C AG +T++ L ++ L ++ + LR
Sbjct: 241 VDGIV-GTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELR------------------ 281
Query: 497 YDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEI 556
++E +R P+ + R +L D I +G+++ L + DP
Sbjct: 282 -TTPESTPAAVEELMRYDPPVQAVTRWAYEDIRL--GDHDIPRGSRVVALLGSANRDPAR 338
Query: 557 YP 558
+P
Sbjct: 339 FP 340
Score = 28.4 bits (64), Expect = 6.6
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
R+D + +++ R ++ + I C AG +T++ L ++ L +
Sbjct: 222 RDDLLTLLVRARDTGSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAH 273
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 36.9 bits (86), Expect = 0.017
Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 20/126 (15%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
++ I + + +AG +T+ +T + L++ +
Sbjct: 256 GERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWS------------- 302
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
D L ++E +R +P+ + R + +L + G K+ + +
Sbjct: 303 -----DFDGLAPTAVEEIVRWASPVVYMRRTLTQDIEL--RGTKMAAGDKVSLWYCSANR 355
Query: 553 DPEIYP 558
D +
Sbjct: 356 DESKFA 361
Score = 32.7 bits (75), Expect = 0.31
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D + ++E + ++ I + L +AG +T+ +T + L++
Sbjct: 242 HDDLTSSLVEAEVDGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRY 293
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 36.5 bits (85), Expect = 0.018
Identities = 15/122 (12%), Positives = 41/122 (33%), Gaps = 21/122 (17%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
+E +AG T++ +L + L ++ +
Sbjct: 227 DDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAA------------------ 268
Query: 497 YDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEI 556
++ + +++E LR P Q+ R T ++ ++ + I + + + D +
Sbjct: 269 -EDPGRIPAIVEEVLRYRPPFPQMQRTTTKATEVA--GVPIPADVMVNTWVLSANRDSDA 325
Query: 557 YP 558
+
Sbjct: 326 HD 327
Score = 28.0 bits (63), Expect = 9.3
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 251 NDFINIMMELRKNDP--DITEELITAQ--------------CFLFFIAGFDTSSTVLTFS 294
++ R+ DP D+ L+ A+ +AG T++ +L
Sbjct: 194 TAYLKARCAERRADPGDDLISRLVLAEVDGRALDDEEAANFSTALLLAGHITTTVLLGNI 253
Query: 295 LYELAKN 301
+ L ++
Sbjct: 254 VRTLDEH 260
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 35.7 bits (83), Expect = 0.034
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 31/131 (23%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
D ++ + +T+ V +AGF+ S +++ Y L + + +R
Sbjct: 223 DGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVR-------------- 268
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVID-----KGTKMFIPL 547
+ L ++E LR P R ++ I + + + +
Sbjct: 269 -----RDPSALPNAVEEILRYIAPPETTTRFAAE-------EVEIGGVAIPQYSTVLVAN 316
Query: 548 YGLHHDPEIYP 558
+ DP+ +P
Sbjct: 317 GAANRDPKQFP 327
Score = 28.0 bits (63), Expect = 9.5
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 264 DPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
D ++ + +T+ + +AGF+ S +++ Y L
Sbjct: 223 DGRLSADELTSIALVLLLAGFEASVSLIGIGTYLL 257
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 35.7 bits (83), Expect = 0.034
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 31/131 (23%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+ D+ + + V +AG +T+ + L ++ L
Sbjct: 225 EGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHPEQIDVLL-------------- 270
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVID-----KGTKMFIPL 547
+ + V++E LR + + R+ DI + G + + +
Sbjct: 271 -----RDPGAVSGVVEELLRFTSVSDHIVRMAKE-------DIEVGGATIKAGDAVLVSI 318
Query: 548 YGLHHDPEIYP 558
++ D + Y
Sbjct: 319 TLMNRDAKAYE 329
Score = 29.9 bits (68), Expect = 2.6
Identities = 5/49 (10%), Positives = 20/49 (40%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+ ++ ++ + + D+ + + + +AG +T+ + L
Sbjct: 211 EDGLLDELIARQLEEGDLDHDEVVMIALVLLVAGHETTVNAIALGALTL 259
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 35.3 bits (82), Expect = 0.044
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
T+EL+ A AG DT+ ++ F++ L ++ ++
Sbjct: 241 TKELV-ALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVK------------------ 281
Query: 497 YDEMPLLDRVIKESLRMYTPL-GQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPE 555
E L+ + E LR L R + + I KG +F+ + D
Sbjct: 282 -AEPGLMRNALDEVLRFDNILRIGTVRFARQDLEY--CGASIKKGEMVFLLIPSALRDGT 338
Query: 556 IYP 558
++
Sbjct: 339 VFS 341
Score = 29.5 bits (67), Expect = 2.9
Identities = 9/53 (16%), Positives = 26/53 (49%)
Query: 249 KRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
ND + ++++ + ++ + + A AG DT+ ++ F++ L ++
Sbjct: 221 LENDVLTMLLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRS 273
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 34.9 bits (81), Expect = 0.062
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 32/142 (22%)
Query: 423 VLIKDFDVFTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEIN 482
L + +++EL FF AG ++ + LT +L L + +++ L
Sbjct: 205 ELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLH---- 260
Query: 483 DTKAKYGGELTYESYDEMPLLDRVIKESLRMYTPLGQ-LDRITGRSYQLPNTDIVID--- 538
++ L+ ++E LR+ L R+ DI +
Sbjct: 261 ---------------EKPELIPAGVEELLRINLSFADGLPRLATA-------DIQVGDVL 298
Query: 539 --KGTKMFIPLYGLHHDPEIYP 558
KG + + L G + DPE +P
Sbjct: 299 VRKGELVLVLLEGANFDPEHFP 320
Score = 30.3 bits (69), Expect = 1.8
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 252 DFINIMMELRKNDPD--ITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+ + LRK+ +++EL FF AG ++ + LT +L L
Sbjct: 201 GLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISL 249
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 34.9 bits (81), Expect = 0.064
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
R++T E + + G DT+ +T + L KN + L+
Sbjct: 247 TRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLK-------------- 292
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYG-LH 551
L++ ++ E +R TPL + R +L I KG K+ + Y +
Sbjct: 293 -----ANPALVETMVPEIIRWQTPLAHMRRTAIADSEL--GGKTIRKGDKVVM-WYYSGN 344
Query: 552 HDPEIYP 558
D E+
Sbjct: 345 RDDEVID 351
Score = 29.9 bits (68), Expect = 2.2
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
ND I+++ ++T E L + G DT+ +T + L KN
Sbjct: 234 GNDLISMLAH-SPATRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKN 284
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 33.1 bits (76), Expect = 0.24
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 436 ITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYE 495
I ++ I A AG DT+S+ ++ L++N + +
Sbjct: 252 IDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQLALAK----------------- 294
Query: 496 SYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYG-LHHDP 554
+ L+ R++ E++R P+ R ++ I +G ++ + Y + D
Sbjct: 295 --SDPALIPRLVDEAVRWTAPVKSFMRTALADTEV--RGQNIKRGDRIML-SYPSANRDE 349
Query: 555 EIYP 558
E++
Sbjct: 350 EVFS 353
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
++D ++++ + + I ++ I A AG DT+S+ ++ L++N
Sbjct: 235 KDDVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRN 286
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 33.0 bits (76), Expect = 0.29
Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 32/132 (24%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+I + F+ +AG T ++ + LA++ + L+
Sbjct: 222 PGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLK-------------- 267
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQ-LDRITGRSYQLPNTDIVID-----KGTKMFIP 546
L + ++E R +T + R D++I +
Sbjct: 268 -----ANPSLAPQFVEELCRYHTASALAIKRTAKE-------DVMIGDKLVRANEGIIAS 315
Query: 547 LYGLHHDPEIYP 558
+ D E++
Sbjct: 316 NQSANRDEEVFE 327
Score = 28.7 bits (65), Expect = 5.0
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
++D I+ + + +I + FL +AG T ++ + LA++
Sbjct: 208 KDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQH 259
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 32.6 bits (75), Expect = 0.29
Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 23/124 (18%)
Query: 435 DITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTY 494
++++ + IAG +T++ +++ S+ + + +R+E
Sbjct: 193 NLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNL-WQRIREE-------------- 237
Query: 495 ESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDP 554
L + I+E+LR P+ + R T +L D I++G + + + + D
Sbjct: 238 ------NLYLKAIEEALRYSPPVMRTVRKTKERVKLG--DQTIEEGEYVRVWIASANRDE 289
Query: 555 EIYP 558
E++
Sbjct: 290 EVFH 293
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 32.0 bits (72), Expect = 0.50
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 466 ELAKNKSIQSTLRKEINDTKAKYGGELTYES----YDEMPLLDRVIKESLRMYTPLGQLD 521
E+ + ++ R+ I + +Y G +TY + + D V S Y P+ +
Sbjct: 174 EMTTAEPHEAMWRETIARVRTEYDGLVTYNCNHGREEHVRFWDAVDLISSSAYYPIDRWR 233
Query: 522 RITGR 526
Sbjct: 234 DRVPV 238
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 31.9 bits (73), Expect = 0.56
Identities = 6/52 (11%), Positives = 24/52 (46%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D + +++ + ++++ + +AG +T+ +T + A++
Sbjct: 236 ADDIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEH 287
Score = 31.5 bits (72), Expect = 0.83
Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 23/126 (18%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
++++ + +AG +T+ +T + A++ +K
Sbjct: 250 GEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELYKKV------------ 297
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+ E +R TP+ R R Y+L + + I KG ++ + +
Sbjct: 298 ---------RPETAADEIVRWATPVTAFQRTALRDYEL--SGVQIKKGQRVVMFYRSANF 346
Query: 553 DPEIYP 558
D E++
Sbjct: 347 DEEVFQ 352
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 31.6 bits (72), Expect = 0.81
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+D ++ + +++ + AG DT+S + LA++
Sbjct: 257 TDDVATVIANAVVDGEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARD 308
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 30.6 bits (70), Expect = 1.2
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 25/127 (19%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+R +T + + I G +T++ ++ + + +N I K
Sbjct: 170 NRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDENPDIIDDALKNR----------- 218
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLD-RITGRSYQLPNTDIVIDKGTKMFIPLYGLH 551
++E+LR Y+P+ L R + + I KG ++ + L +
Sbjct: 219 -----------SGFVEETLRYYSPIQFLPHRFAAEDSYIN--NKKIKKGDQVIVYLGSAN 265
Query: 552 HDPEIYP 558
D +
Sbjct: 266 RDETFFD 272
Score = 29.5 bits (67), Expect = 3.2
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
+ IN++ + +T + L I G +T++ ++ + + +N
Sbjct: 156 SHGIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDEN 207
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 30.4 bits (69), Expect = 1.7
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 21/109 (19%)
Query: 450 IAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYESYDEMPLLDRVIKE 509
AG + ++ + ++ ++ + + D+ R + E
Sbjct: 221 FAGAEMTANTVVDAVLAVSAEPGLAERIA-------------------DDPAAAQRTVAE 261
Query: 510 SLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEIYP 558
LR++ L R +L + VI +G ++ + + + DPE++
Sbjct: 262 VLRLHPALHLERRTATAEVRL--GEHVIGEGEEVVVVVAAANRDPEVFA 308
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 29.9 bits (68), Expect = 2.5
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 19/56 (33%)
Query: 62 PVLVLADS----------------EIIKHVLIKDFDVFTDRGFFEANETDEPIMRN 101
P V+ D E+ KH L+ E + D I+++
Sbjct: 154 PTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQ---DIEQHFKDREILQS 206
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.80A {Thermus
thermophilus} SCOP: e.22.1.1
Length = 348
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/57 (17%), Positives = 13/57 (22%), Gaps = 19/57 (33%)
Query: 62 PVLVLAD----------------SEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNL 102
P V A+ E KH LI + E P +
Sbjct: 149 PQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALL---KVEDLTPQSPRLEAF 202
Score = 28.4 bits (64), Expect = 5.9
Identities = 9/59 (15%), Positives = 12/59 (20%), Gaps = 23/59 (38%)
Query: 410 PVLVLAD----------------SEIIKHVLIKDFDVFT-------DRDITEELITAQC 445
P V A+ E KH LI + E +
Sbjct: 149 PQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDLTPQSPRLEAFLARAV 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.1
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 19/45 (42%)
Query: 469 KN--KSIQSTLRKEINDTKAKYGGELTYESYDEMPLLDRVIKESL 511
K K +Q++L+ Y D P L IK ++
Sbjct: 19 KQALKKLQASLKL--------------YAD-DSAPAL--AIKATM 46
Score = 28.4 bits (62), Expect = 3.9
Identities = 4/13 (30%), Positives = 8/13 (61%), Gaps = 3/13 (23%)
Query: 507 IKE---SLRMYTP 516
+K+ SL++Y
Sbjct: 22 LKKLQASLKLYAD 34
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 29.1 bits (66), Expect = 3.7
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+D I+ ++ D + + + IA DT++ ++ L
Sbjct: 205 GDDLISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALL 253
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 29.1 bits (66), Expect = 3.9
Identities = 8/49 (16%), Positives = 26/49 (53%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+D ++ +++ R ++E+ + +AG+++++T + +Y L
Sbjct: 222 TDDLVSALVQARDQQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLL 270
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 29.1 bits (66), Expect = 4.3
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+ ++ + + +I E + + L IAG +T++++ + S+ L
Sbjct: 212 GAGLVGALVADQLANGEIDREELISTAMLLLIAGHETTASMTSLSVITL 260
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 29.1 bits (66), Expect = 4.4
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
R+D I+ ++ ++T E + + + AG +T+++++ S L
Sbjct: 217 RDDLISKLVTDHLVPGNVTTEQLLSTLGITINAGRETTTSMIALSTLLL 265
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 29.1 bits (66), Expect = 4.6
Identities = 7/49 (14%), Positives = 23/49 (46%)
Query: 250 RNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+D + + ++ + + + + FL AG +T++ +++ + L
Sbjct: 213 GDDLFSRQIARQRQEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGL 261
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 28.8 bits (65), Expect = 5.1
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 260 LRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
+ + D T+E + C +AG D S ++ + +
Sbjct: 214 VAEYGDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAM 252
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 28.7 bits (65), Expect = 5.3
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 261 RKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
R++ +I++E + I + + L ++ L
Sbjct: 205 REHGAEISDEELAGLAEGNLIMAAEQMAAQLAVAVLLL 242
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Length = 343
Score = 28.4 bits (64), Expect = 6.0
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 22/58 (37%)
Query: 410 PVLVLAD----------------SEIIKHVLIKDFDVFT------DRDITEELITAQC 445
P V D +EIIK + D ++ +D EE+I
Sbjct: 150 PKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVERLETKDLKDCLEEVIFQSV 207
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 28.4 bits (64), Expect = 7.9
Identities = 7/38 (18%), Positives = 20/38 (52%)
Query: 264 DPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELAKN 301
D + + + +AG++T++ L ++Y+ A++
Sbjct: 235 DGVLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQH 272
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 28.4 bits (63), Expect = 8.2
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 282 AGFDTSSTVLTFSLYELAK------NKSIQSTLRKEINDTKAKYGGELTYES---LILDW 332
F T+ T S +L ++ + N T K G Y + ++ +
Sbjct: 366 TTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAY 425
Query: 333 IILSSIVILLYYLKT 347
L S + Y++
Sbjct: 426 QPLLSNTLAELYVRE 440
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.0 bits (63), Expect = 9.1
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 266 DITEELITAQCFLFFIAGFDTSSTVLTFSLYEL 298
++TE+ + AG D+ ++++ + L
Sbjct: 225 ELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLL 257
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein
binding, sugar protein; 2.41A {Geobacillus
stearothermophilus}
Length = 412
Score = 28.2 bits (61), Expect = 9.2
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 468 AKNKSIQSTLRKEINDTKAKYGGELTYESYDEMPLLDRVIKESLR 512
+ +++ + + + +++YE +LDRV +S R
Sbjct: 105 KMRQELKAAVDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTR 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.405
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,628,886
Number of extensions: 532898
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 170
Length of query: 560
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 462
Effective length of database: 3,965,535
Effective search space: 1832077170
Effective search space used: 1832077170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)