RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14266
(560 letters)
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 100 bits (250), Expect = 2e-23
Identities = 40/258 (15%), Positives = 87/258 (33%), Gaps = 10/258 (3%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPTF 121
PV+VL ++ I+ L+ + F+ RG + + G+ WR +R T
Sbjct: 47 PVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI-FQGYGVIFANGERWRALRRFSLATM 105
Query: 122 TSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEINAL 181
+ + + E ++ + K +D +++I S VFG +
Sbjct: 106 RDFGMGKRS-VEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYK 164
Query: 182 ENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQNLS 241
+ + + + F + L ++ F +N+Q + Q++
Sbjct: 165 DPVFLRLLDLFFQSFSLISSFSS-QVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVE 223
Query: 242 YREQNNIKRN-------DFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFS 294
N + + + + + + F AG +T+ST L +
Sbjct: 224 KHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYG 283
Query: 295 LYELAKNKSIQSTLRKEI 312
+ K + ++KEI
Sbjct: 284 FLLMLKYPHVTERVQKEI 301
Score = 57.0 bits (136), Expect = 3e-09
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 2/127 (1%)
Query: 432 TDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGE 491
+ + + F AG +T+ST L + + K + ++KEI +
Sbjct: 252 PSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEI-EQVIGSHRP 310
Query: 492 LTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLH 551
+ +MP D VI E R+ + T VI K T++F L
Sbjct: 311 PALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFR-GYVIPKNTEVFPVLSSAL 369
Query: 552 HDPEIYP 558
HDP +
Sbjct: 370 HDPRYFE 376
Score = 37.0 bits (84), Expect = 0.005
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 365 PTFPF-GNVYEAITMQRPTHFVYQDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHV 423
P GN+ + ++ + + K+G ++ + PV+VL ++ I+
Sbjct: 8 SPLPVLGNLLQM--DRKGLLRSFLRLRE--KYG---DVFTVYLGSRPVVVLCGTDAIREA 60
Query: 424 LIKDFDVFTDR 434
L+ + F+ R
Sbjct: 61 LVDQAEAFSGR 71
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 94.8 bits (234), Expect = 2e-21
Identities = 76/262 (29%), Positives = 139/262 (53%), Gaps = 13/262 (4%)
Query: 62 PVLVLADSEIIKHVLIKD-FDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPT 120
PVL + D ++IK VL+K+ + VFT+R F + + +EW+++R+ +SPT
Sbjct: 53 PVLAITDPDMIKTVLVKECYSVFTNRRPFG---PVGFMKSAISIAEDEEWKRLRSLLSPT 109
Query: 121 FTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEINA 180
FTSGK+KEM P++ G +V L + + + + +K+ G Y D+I ST FG+ I++
Sbjct: 110 FTSGKLKEMVPIIAQYGDVLVRNLRREA-ETGKPVTLKDVFGAYSMDVITSTSFGVNIDS 168
Query: 181 LENPDCEFRKVSKEMLNPKLR--FRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQ 238
L NP F + +K++L F + + + + I + L+ + R+ F V +
Sbjct: 169 LNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKR 228
Query: 239 NLSYREQNNIKRNDFINIMMELRKNDPD------ITEELITAQCFLFFIAGFDTSSTVLT 292
R ++ K +M +N + +++ + AQ +F AG++T+S+VL+
Sbjct: 229 MKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLS 288
Query: 293 FSLYELAKNKSIQSTLRKEIND 314
F +YELA + +Q L++EI+
Sbjct: 289 FIMYELATHPDVQQKLQEEIDA 310
Score = 52.8 bits (125), Expect = 7e-08
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 351 SYQYWKSRNVPFLRPTFPFGNVYEAITMQRPTHFVYQDIYMEIKFGLKSPFAGIFTTTTP 410
S+ +K +P P GN+ + + + K+G G + P
Sbjct: 2 SHGLFKKLGIPGPTPLPFLGNILS---YHKGFCMFDMECHK--KYG---KVWGFYDGQQP 53
Query: 411 VLVLADSEIIKHVLIKD-FDVFTDR 434
VL + D ++IK VL+K+ + VFT+R
Sbjct: 54 VLAITDPDMIKTVLVKECYSVFTNR 78
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 87.5 bits (215), Expect = 5e-19
Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 9/302 (2%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPTF 121
+VL +++K L+ ++F DR + L G W R +F
Sbjct: 46 STVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTKMGGLLNSRYGRGWVDHRRLAVNSF 105
Query: 122 TSGKIKEMFPLMESCGRNVVSILTKYINK-KNESIDVKEYLGRYMTDLIGSTVFGMEINA 180
+ ES I K D K+ + ++++ +FG
Sbjct: 106 RYFGYGQKS--FESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGERFTY 163
Query: 181 LENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSG--LMMDRKNVQFFLDLVHQ 238
+ ++ E + + + I F L + V FL + +
Sbjct: 164 EDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIE 223
Query: 239 NLSYREQNNIKRNDFINIMMELRKNDPD----ITEELITAQCFLFFIAGFDTSSTVLTFS 294
S + + ++ + E+ + D ++E + IAG +T++ VL ++
Sbjct: 224 KASVNRKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWA 283
Query: 295 LYELAKNKSIQSTLRKEINDTKAKYGGELTYESLILDWIILSSIVILLYYLKTIFISYQY 354
+ +A +IQ ++KEI+ G + + + +L + +
Sbjct: 284 ILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHA 343
Query: 355 WK 356
Sbjct: 344 TS 345
Score = 50.1 bits (118), Expect = 4e-07
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 437 TEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGELTYES 496
++E + IAG +T++ VL +++ +A +IQ ++KEI D G+ +++
Sbjct: 257 SKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEI-DLIMGPNGKPSWDD 315
Query: 497 YDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHHDPEI 556
+MP + V+ E LR + + I KGT + LY +H D +
Sbjct: 316 KCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVR-GYSIPKGTTVITNLYSVHFDEKY 374
Query: 557 YP 558
+
Sbjct: 375 WR 376
Score = 37.8 bits (86), Expect = 0.003
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 365 PTFPF-GNVYEAITMQRPTHFVYQDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHV 423
P PF GN+Y H + +G + +VL +++K
Sbjct: 5 PGLPFIGNIYSLAASSELPHVYMRKQSQ--VYG---EIFSLDLGGISTVVLNGYDVVKEC 59
Query: 424 LIKDFDVFTDR 434
L+ ++F DR
Sbjct: 60 LVHQSEIFADR 70
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 84.0 bits (206), Expect = 7e-18
Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 10/249 (4%)
Query: 58 FAVIPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKM 117
F + P++VL E +K LI + F+ RG F E + G +W+++R
Sbjct: 44 FGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERA-NRGFGIVFSNGKKWKEIRRFS 102
Query: 118 SPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGME 177
T + + + + + ++ + K D LG ++I S +F
Sbjct: 103 LMTLRNFGMGKRS-IEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKR 161
Query: 178 INALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVH 237
+ + + L + I P I F KNV F +
Sbjct: 162 FDYKDQQFLNLMEKL-NENIKILSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYIL 220
Query: 238 QNLSYREQNNIKRNDFINIM-------MELRKNDPDITEELITAQCFLFFIAGFDTSSTV 290
+ + +++ N I E + T E + F AG +T+ST
Sbjct: 221 EKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTT 280
Query: 291 LTFSLYELA 299
L ++L L
Sbjct: 281 LRYALLLLL 289
Score = 39.7 bits (91), Expect = 7e-04
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 365 PTFPF-GNVYEAITMQRPTHFVYQDIYMEIKFGLKSPFAGIFTTTTPVLVLADSEIIKHV 423
P GN+ + + ++ +G P ++ P++VL E +K
Sbjct: 9 TPLPVIGNILQ--IGIKDISKSLTNLSK--VYG---PVFTLYFGLKPIVVLHGYEAVKEA 61
Query: 424 LIKDFDVFTDRDI 436
LI + F+ R I
Sbjct: 62 LIDLGEEFSGRGI 74
Score = 30.1 bits (66), Expect = 0.73
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGG 490
+ T E + F AG +T+ST L ++L L K+ + + +++EI +
Sbjct: 252 NQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGR-NR 310
Query: 491 ELTYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGL 550
+ MP D V+ E R L + + + +I KGT + I L +
Sbjct: 311 SPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHA-VTCDIKFRNYLIPKGTTILISLTSV 369
Query: 551 HHDPEIYP 558
HD + +P
Sbjct: 370 LHDNKEFP 377
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 73.6 bits (179), Expect = 2e-14
Identities = 49/271 (18%), Positives = 98/271 (36%), Gaps = 14/271 (5%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLF--GLTGDEWRKMRNKMSP 119
L+ +IK + + + LF W+K N + P
Sbjct: 46 VTRYLSSQRLIKEACDESRFDKNLSQALKF--VRDFAGDGLFTSWTHEKNWKKAHNILLP 103
Query: 120 TFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEIN 179
+F+ +K +M +V +E I+V E + R D IG F N
Sbjct: 104 SFSQQAMKGYHAMMVDIAVQLVQK--WERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFN 161
Query: 180 ALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQN 239
+ + + L P+ + +++++ DLV +
Sbjct: 162 SFYRDQPH----PFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKI 217
Query: 240 LSYREQNNIKRNDFINIMMELRKNDPD--ITEELITAQCFLFFIAGFDTSSTVLTFSLYE 297
++ R+ + + +D + M+ + + + +E I Q F IAG +T+S +L+F+LY
Sbjct: 218 IADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYF 277
Query: 298 LAKNKSIQSTLRKEINDTKAKYGGELTYESL 328
L KN + +E + +Y+ +
Sbjct: 278 LVKNPHVLQKAAEEAA--RVLVDPVPSYKQV 306
Score = 34.7 bits (78), Expect = 0.028
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 433 DRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAKNKSIQSTLRKEINDTKAKYGGEL 492
+ +E I Q F IAG +T+S +L+F+LY L KN + +E +
Sbjct: 244 GEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAA--RVLVDPVP 301
Query: 493 TYESYDEMPLLDRVIKESLRMYTPLGQLDRITGRSYQLPNTDIVIDKGTKMFIPLYGLHH 552
+Y+ ++ + V+ E+LR++ L + ++KG ++ + + LH
Sbjct: 302 SYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGG-EYPLEKGDELMVLIPQLHR 360
Query: 553 DPEIYP 558
D I+
Sbjct: 361 DKTIWG 366
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 66.2 bits (160), Expect = 3e-12
Identities = 22/240 (9%), Positives = 62/240 (25%), Gaps = 27/240 (11%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIM--RNLFGLTGDEWRKMRNKMSP 119
+ + +E K D + + + + G+ G +
Sbjct: 40 NFICMTGAEAAKVFYDTDRFQRQNAL---PKRVQKSLFGVNAIQGMDGSAHIHRKMLFLS 96
Query: 120 TFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGMEIN 179
T K + LM + V+ K + + E + +
Sbjct: 97 LMTPPHQKRLAELMTEEWKAAVTRWEKAD-----EVVLFEEAKEILCRVACYWAGV---- 147
Query: 180 ALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVHQN 239
+ E ++ + + ++ ++ + G + ++ ++
Sbjct: 148 --PLKETEVKERADDFID---------MVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDA 196
Query: 240 LSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYELA 299
+ + ++ M + D + + A + + S L FS L
Sbjct: 197 RAGLLKT--TSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALH 254
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 52.5 bits (124), Expect = 7e-08
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 61 IPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPT 120
P+ ++ D E ++ L+ + + R L G+ W++ R +
Sbjct: 41 FPLALIFDPEGVEGALLAEGTTKATFQY---RALSRLTGRGLLTDWGESWKEARKALKDP 97
Query: 121 FTSGKIKEMFPLMESCGR 138
F ++ ME R
Sbjct: 98 FLPKNVRGYREAMEEEAR 115
Score = 33.2 bits (74), Expect = 0.088
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 398 KSPFAGIFTTTTPVLVLADSEIIKHVLIKDFDVFTDR 434
P + P+ ++ D E ++ L+ +
Sbjct: 30 AHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATF 66
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 51.7 bits (122), Expect = 1e-07
Identities = 35/248 (14%), Positives = 80/248 (32%), Gaps = 37/248 (14%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPI----MRNLFGLTGDEWRKMRNKM 117
V E+++ +L D + FT R F +++ + + + E ++R +
Sbjct: 51 FVWQAHGYEVVRRIL-GDHEHFTTRPQFTQSKSGAHVEAQFVGQISTYDPPEHTRLRKML 109
Query: 118 SPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTVFGME 177
+P FT +I+ M P ++S + + + S D++ + + G+
Sbjct: 110 TPEFTVRRIRRMEPAIQSL----IDDRLDLLEAEGPSADLQGLFADPVGAHALCELLGIP 165
Query: 178 INALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFLDLVH 237
+ R+ + K R +
Sbjct: 166 RDDQREFVRRIRRNADLSRGLKARAADSAA----------------------------FN 197
Query: 238 QNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLTFSLYE 297
+ L D + M +R + ++T+E + C + G +T + ++ F +
Sbjct: 198 RYLDNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALILGGVETVAGMIGFGVLA 257
Query: 298 LAKNKSIQ 305
L N
Sbjct: 258 LLDNPGQI 265
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 46.3 bits (108), Expect = 7e-06
Identities = 28/227 (12%), Positives = 72/227 (31%), Gaps = 22/227 (9%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANET--------DEPIMRNLFGLTGDEWRKM 113
+ +++ V+ D F+ R ++ + ++ NL E ++
Sbjct: 37 THWMATAHAVVRQVM-GDHQQFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPPEHTRL 95
Query: 114 RNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGSTV 173
R K++P FT K++ M P +E V+ + + D+ ++ + + +
Sbjct: 96 RRKLTPGFTLRKMQRMAPYIEQI----VNDRLDEMERAGSPADLIAFVADKVPGAVLCEL 151
Query: 174 FGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFFL 233
G+ + F K+ L+ L + L ++L ++ +
Sbjct: 152 VGVP----RDDRDMFMKLCHGHLDASLSQKRRAALG---DKFSRYLLAMIARERKEPGEG 204
Query: 234 DLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFF 280
+ Y + + +++ D +I
Sbjct: 205 MIGAVVAEYGDDAT--DEELRGFCVQVMLAGDDNISGMIGLGVLAML 249
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 44.8 bits (104), Expect = 2e-05
Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 33/253 (13%)
Query: 61 IPVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPI--------MRNLFGLTGDEWRK 112
+ ++D ++K +L R + A + N+F G RK
Sbjct: 32 VQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVENMFTAYGPNHRK 91
Query: 113 MRNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIGST 172
+R ++P F++ ++ M P +E+ +V L + + +D+++ L + +
Sbjct: 92 LRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEP--VDLRQELAYPLPIAVIGH 149
Query: 173 VFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKNVQFF 232
+ G+ + + V L+ + +
Sbjct: 150 LMGVPQDRRDGFRALVDGVFDTTLDQA-----------------------EAQANTARLY 186
Query: 233 LDLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSSTVLT 292
L + R + + + ++ E + L AG++T+ V+
Sbjct: 187 EVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYETTVNVID 246
Query: 293 FSLYELAKNKSIQ 305
+++ L
Sbjct: 247 QAVHTLLTRPDQL 259
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 41.6 bits (96), Expect = 2e-04
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEPIMRNLFGLTGDEWRKMRNKMSPTF 121
+ ++I+ +D+ F+ F E E + E R+ R +
Sbjct: 51 GHWIATRGQLIREAY-EDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVV 109
Query: 122 TSGKIKEMFPLMESC 136
+ ++ ++
Sbjct: 110 GMPVVDKLENRIQEL 124
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 36.3 bits (82), Expect = 0.008
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEP-----------IMRNLFGLTGDEW 110
PV + K +L D + D + A E R++ + G E
Sbjct: 35 PVWAVTHHAEAKALL-TDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTVDGAEH 93
Query: 111 RKMRNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDLIG 170
R++R ++ T +++ M + L + +D+K + +
Sbjct: 94 RRLRTLVAQALTVRRVEHMRGRITEL----TDRLLDELPADGGVVDLKAAFAYPLPMYVV 149
Query: 171 STVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMIL 208
+ + G+E L F K P+ + L
Sbjct: 150 ADLMGIEEARLPRLKVLFEKFFSTQTPPEEVVATLTEL 187
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 34.4 bits (77), Expect = 0.033
Identities = 25/251 (9%), Positives = 62/251 (24%), Gaps = 29/251 (11%)
Query: 62 PVLVLADSEIIKHVLIKDFDVFTDRGFFEANETDEP-------------IMRNLFGLTGD 108
P+ + + + K +F++ E ++ +L +
Sbjct: 50 PMWIATKHADVMQIG-KQPGLFSNAEGSEILYDQNNEAFMRSISGGCPHVIDSLTSMDPP 108
Query: 109 EWRKMRNKMSPTFTSGKIKEMFPLMESCGRNVVSILTKYINKKNESIDVKEYLGRYMTDL 168
R F I+++ + + + + + D Y
Sbjct: 109 THTAYRGLTLNWFQPASIRKLEENIRRIAQAS----VQRLLDFDGECDFMTDCALYYPLH 164
Query: 169 IGSTVFGMEINALENPDCEFRKVSKEMLNPKLRFRIVMILVLLIPNIRKFLSGLMMDRKN 228
+ T G+ + + ++ + P + +
Sbjct: 165 VVMTALGV--------PEDDEPLMLKLTQDFFGVHEPDEQAVAAPRQSADEAARRF-HET 215
Query: 229 VQFFLDLVHQNLSYREQNNIKRNDFINIMMELRKNDPDITEELITAQCFLFFIAGFDTSS 288
+ F D + R + +L N D AG DT+S
Sbjct: 216 IATFYDYFNGFTVDRRSCPKDDVMSLLANSKLDGNYIDDKYINAY--YVAIATAGHDTTS 273
Query: 289 TVLTFSLYELA 299
+ ++ L+
Sbjct: 274 SSSGGAIIGLS 284
Score = 28.2 bits (61), Expect = 2.9
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 534 DIVIDKGTKMFIPLYGLHHDPEIYP 558
I +G ++ + + D E++
Sbjct: 329 GQNIKRGDRIMLSYPSANRDEEVFS 353
>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
[TaxId: 10298]}
Length = 615
Score = 32.0 bits (73), Expect = 0.19
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 282 AGFDTSSTVLTFSLYELAK------NKSIQSTLRKEINDTKAKYGGELTYES---LILDW 332
F T+ T S +L ++ + N T K G Y++ ++ +
Sbjct: 283 TTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAY 342
Query: 333 IILSSIVILLYYLKT 347
L S + Y++
Sbjct: 343 QPLLSNTLAELYVRE 357
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 19/72 (26%)
Query: 431 FTDRDITEELITAQCFVFFIAGFDTSSTVLTFSLYELAK------NKSIQSTLRKEINDT 484
F+ I+ F T+ T S +L ++ + N T
Sbjct: 276 FSSDAIS-------------TTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNAT 322
Query: 485 KAKYGGELTYES 496
K G Y++
Sbjct: 323 HIKVGQPQYYQA 334
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.405
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,113,876
Number of extensions: 102635
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 28
Length of query: 560
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 470
Effective length of database: 1,171,896
Effective search space: 550791120
Effective search space used: 550791120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.9 bits)