Query psy14268
Match_columns 108
No_of_seqs 121 out of 1577
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 15:30:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158|consensus 99.6 4.8E-17 1E-21 133.3 2.9 28 1-28 395-422 (499)
2 PLN02169 fatty acid (omega-1)- 99.4 4.1E-14 9E-19 114.7 2.8 28 1-28 396-424 (500)
3 PLN02394 trans-cinnamate 4-mon 99.4 6.9E-14 1.5E-18 112.5 3.3 28 1-28 394-421 (503)
4 PLN02183 ferulate 5-hydroxylas 99.4 6.7E-14 1.5E-18 113.4 3.0 28 1-28 404-431 (516)
5 PLN02971 tryptophan N-hydroxyl 99.4 7.5E-14 1.6E-18 114.1 3.3 28 1-28 428-455 (543)
6 PLN02500 cytochrome P450 90B1 99.4 7.7E-14 1.7E-18 112.2 3.1 28 1-28 384-411 (490)
7 PF00067 p450: Cytochrome P450 99.4 9E-14 1.9E-18 106.2 2.2 29 1-29 363-391 (463)
8 PLN03195 fatty acid omega-hydr 99.4 1E-13 2.2E-18 112.1 2.1 28 1-28 413-441 (516)
9 PLN03234 cytochrome P450 83B1; 99.4 1.5E-13 3.2E-18 110.5 2.7 28 1-28 389-417 (499)
10 KOG0157|consensus 99.4 1.2E-13 2.5E-18 112.5 2.1 28 1-28 393-421 (497)
11 PTZ00404 cytochrome P450; Prov 99.4 1.8E-13 4E-18 109.5 2.4 27 1-27 385-411 (482)
12 PLN00168 Cytochrome P450; Prov 99.4 3.1E-13 6.7E-18 109.6 3.3 28 1-28 408-435 (519)
13 PLN02966 cytochrome P450 83A1 99.4 2.7E-13 5.7E-18 109.5 2.7 28 1-28 392-420 (502)
14 PLN02738 carotene beta-ring hy 99.3 4.4E-13 9.6E-18 112.3 3.2 28 1-28 490-517 (633)
15 KOG0156|consensus 99.3 4.1E-13 8.9E-18 109.9 2.7 28 1-28 387-414 (489)
16 PLN00110 flavonoid 3',5'-hydro 99.3 4.3E-13 9.4E-18 108.8 2.8 28 1-28 390-417 (504)
17 PLN03141 3-epi-6-deoxocathaste 99.3 5.2E-13 1.1E-17 106.4 2.7 28 1-28 355-382 (452)
18 PLN02936 epsilon-ring hydroxyl 99.3 1.2E-12 2.5E-17 105.7 3.1 28 1-28 378-405 (489)
19 PLN02687 flavonoid 3'-monooxyg 99.3 1.3E-12 2.8E-17 105.9 3.3 28 1-28 398-425 (517)
20 PLN02426 cytochrome P450, fami 99.3 1.2E-12 2.5E-17 106.5 2.8 28 1-28 395-423 (502)
21 PLN02290 cytokinin trans-hydro 99.3 8.8E-13 1.9E-17 106.5 1.9 27 1-27 415-442 (516)
22 PLN03018 homomethionine N-hydr 99.3 1.9E-12 4E-17 106.2 3.6 28 1-28 415-442 (534)
23 PLN02655 ent-kaurene oxidase 99.3 1.5E-12 3.2E-17 104.3 2.8 28 1-28 362-389 (466)
24 PLN02774 brassinosteroid-6-oxi 99.3 1.9E-12 4.2E-17 103.5 2.4 28 1-28 367-394 (463)
25 PLN03112 cytochrome P450 famil 99.3 2.5E-12 5.4E-17 103.8 2.9 28 1-28 397-424 (514)
26 PLN02302 ent-kaurenoic acid ox 99.2 2.7E-12 5.8E-17 102.4 2.6 28 1-28 391-418 (490)
27 PLN02196 abscisic acid 8'-hydr 99.2 2.6E-12 5.5E-17 103.0 1.9 27 1-27 367-393 (463)
28 PLN02987 Cytochrome P450, fami 99.1 2.1E-11 4.5E-16 98.6 3.2 28 1-28 370-397 (472)
29 KOG0159|consensus 99.1 2.2E-11 4.8E-16 100.1 1.9 29 1-29 417-445 (519)
30 COG2124 CypX Cytochrome P450 [ 99.0 1.5E-10 3.3E-15 92.2 1.7 27 1-27 320-346 (411)
31 KOG0684|consensus 98.8 1.4E-09 3.1E-14 88.6 2.8 29 3-31 380-408 (486)
32 PLN02648 allene oxide synthase 98.7 5.3E-09 1.1E-13 85.4 2.2 28 1-28 378-405 (480)
33 PRK14759 potassium-transportin 35.4 16 0.00034 19.1 0.4 6 21-26 24-29 (29)
34 PF08492 SRP72: SRP72 RNA-bind 34.4 26 0.00057 21.1 1.3 6 22-27 44-49 (59)
35 KOG3506|consensus 32.2 21 0.00045 21.4 0.6 10 98-107 12-21 (56)
36 PF09604 Potass_KdpF: F subuni 31.7 20 0.00043 18.0 0.4 6 21-26 20-25 (25)
No 1
>KOG0158|consensus
Probab=99.65 E-value=4.8e-17 Score=133.31 Aligned_cols=28 Identities=64% Similarity=1.229 Sum_probs=26.3
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|+|+++++||||++|+||++|+||||+.
T Consensus 395 V~Ip~~alH~Dp~~~p~Pe~F~PERF~~ 422 (499)
T KOG0158|consen 395 VMIPTYALHHDPEYWPEPEKFKPERFEE 422 (499)
T ss_pred EEeecccccCCcccCCCcccCCCccCCC
Confidence 6799999999999999999999999964
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.44 E-value=4.1e-14 Score=114.71 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.9
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl~ 28 (108)
|.+++|++||||++| +||++|+||||+.
T Consensus 396 v~i~~~~ihrd~~~w~~dP~~F~PeRfl~ 424 (500)
T PLN02169 396 IVICIYALGRMRSVWGEDALDFKPERWIS 424 (500)
T ss_pred EEEcHHHhhCCccccCCChhhcCccccCC
Confidence 568999999999999 8999999999984
No 3
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.43 E-value=6.9e-14 Score=112.45 Aligned_cols=28 Identities=36% Similarity=0.764 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.++.|++||||++|++|++|+||||+.
T Consensus 394 V~~~~~~~~rd~~~~~~P~~F~PeRwl~ 421 (503)
T PLN02394 394 ILVNAWWLANNPELWKNPEEFRPERFLE 421 (503)
T ss_pred EEEchHHHhCCcccCCCccccCccccCC
Confidence 5688999999999999999999999984
No 4
>PLN02183 ferulate 5-hydroxylase
Probab=99.42 E-value=6.7e-14 Score=113.39 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|++++|++||||++|+||++|+||||+.
T Consensus 404 V~~~~~~~hrd~~~~~dP~~F~PeRfl~ 431 (516)
T PLN02183 404 VMINAWAIGRDKNSWEDPDTFKPSRFLK 431 (516)
T ss_pred EEEehhhhcCCccccCCccccCchhhCC
Confidence 5689999999999999999999999984
No 5
>PLN02971 tryptophan N-hydroxylase
Probab=99.42 E-value=7.5e-14 Score=114.10 Aligned_cols=28 Identities=29% Similarity=0.766 Sum_probs=26.2
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|++++|++||||++|+||++|+||||+.
T Consensus 428 v~~~~~~~~~d~~~~~dP~~F~PeRfl~ 455 (543)
T PLN02971 428 VLLSRYGLGRNPKVWSDPLSFKPERHLN 455 (543)
T ss_pred EEECcHHhcCChhhCCCccccCcccCCC
Confidence 5689999999999999999999999984
No 6
>PLN02500 cytochrome P450 90B1
Probab=99.42 E-value=7.7e-14 Score=112.15 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|++||||++|+||++|+||||+.
T Consensus 384 V~~~~~~~hrdp~~~~dP~~F~PeRfl~ 411 (490)
T PLN02500 384 VLPVIAAVHLDSSLYDQPQLFNPWRWQQ 411 (490)
T ss_pred EEechhhcccCcccCCCccccChhhccC
Confidence 5689999999999999999999999984
No 7
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.40 E-value=9e-14 Score=106.16 Aligned_cols=29 Identities=52% Similarity=1.014 Sum_probs=24.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRVP 29 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~~ 29 (108)
|.++++++|+||++|+||++|+||||+..
T Consensus 363 v~~~~~~~~~d~~~~~dp~~F~P~R~~~~ 391 (463)
T PF00067_consen 363 VIVSIYALHRDPEYFPDPDEFDPERFLDE 391 (463)
T ss_dssp EEEEHHHHTTSTTTSSSTTS--TTGGBTT
T ss_pred ccccccccccccccccccccccccccccc
Confidence 56789999999999999999999999853
No 8
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.39 E-value=1e-13 Score=112.08 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=25.7
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl~ 28 (108)
|.++.|++||||++| +||++|+||||+.
T Consensus 413 V~~~~~~~h~dp~~~g~dP~~F~PeRwl~ 441 (516)
T PLN03195 413 VTYVPYSMGRMEYNWGPDAASFKPERWIK 441 (516)
T ss_pred EEEehHhhccChhhhccChhhcCCcccCC
Confidence 457899999999999 9999999999984
No 9
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.39 E-value=1.5e-13 Score=110.46 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=25.8
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl~ 28 (108)
|.+++|++||||++| +||++|+||||+.
T Consensus 389 v~~~~~~~~rd~~~~~~~P~~F~PeR~l~ 417 (499)
T PLN03234 389 IQVNAWAVSRDTAAWGDNPNEFIPERFMK 417 (499)
T ss_pred EEEehHhhhCCcccccCChhhcCchhhcC
Confidence 567899999999999 8999999999984
No 10
>KOG0157|consensus
Probab=99.39 E-value=1.2e-13 Score=112.51 Aligned_cols=28 Identities=50% Similarity=0.979 Sum_probs=25.5
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl~ 28 (108)
|++++|+|||++.+| +||++|+||||+.
T Consensus 393 V~i~~~~~~r~~~~~~~dp~~F~PeRf~~ 421 (497)
T KOG0157|consen 393 VLISIYALHRDPRVWGEDPEEFDPERFLD 421 (497)
T ss_pred EEEehHHhccCccccCCChhhcCccccCC
Confidence 578899999999999 5999999999974
No 11
>PTZ00404 cytochrome P450; Provisional
Probab=99.37 E-value=1.8e-13 Score=109.50 Aligned_cols=27 Identities=37% Similarity=0.750 Sum_probs=25.4
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl 27 (108)
|.++.+++||||++|+||++|+||||+
T Consensus 385 V~~~~~a~hrdp~~~~dP~~F~PeRwl 411 (482)
T PTZ00404 385 ILINYYSLGRNEKYFENPEQFDPSRFL 411 (482)
T ss_pred EEeeHHHhhCCccccCCccccCccccC
Confidence 568899999999999999999999997
No 12
>PLN00168 Cytochrome P450; Provisional
Probab=99.36 E-value=3.1e-13 Score=109.61 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.++++++||||++|++|++|+||||+.
T Consensus 408 v~~~~~~~~~d~~~~~~p~~F~PeRf~~ 435 (519)
T PLN00168 408 VNFMVAEMGRDEREWERPMEFVPERFLA 435 (519)
T ss_pred EEEChHHHhcCccccCCccccCcccCCC
Confidence 5688999999999999999999999984
No 13
>PLN02966 cytochrome P450 83A1
Probab=99.36 E-value=2.7e-13 Score=109.47 Aligned_cols=28 Identities=36% Similarity=0.674 Sum_probs=26.0
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl~ 28 (108)
|.+++|++||||++| ++|++|+||||+.
T Consensus 392 V~~~~~~~~rdp~~~g~dP~~F~PeRwl~ 420 (502)
T PLN02966 392 VNVNAWAVSRDEKEWGPNPDEFRPERFLE 420 (502)
T ss_pred EEEecccccCCcccccCChhhCChhhhcC
Confidence 568999999999999 9999999999984
No 14
>PLN02738 carotene beta-ring hydroxylase
Probab=99.34 E-value=4.4e-13 Score=112.29 Aligned_cols=28 Identities=32% Similarity=0.791 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|.+||||++|+||++|+||||+.
T Consensus 490 V~~s~~~ihrdp~ifpdP~~F~PERWl~ 517 (633)
T PLN02738 490 IFISVWNLHRSPKHWDDAEKFNPERWPL 517 (633)
T ss_pred EEecHHHHhCCccccCCccccCcccCCC
Confidence 5688999999999999999999999984
No 15
>KOG0156|consensus
Probab=99.34 E-value=4.1e-13 Score=109.94 Aligned_cols=28 Identities=36% Similarity=0.846 Sum_probs=26.4
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|++|+||.+|+||++|+|||||+
T Consensus 387 v~vn~~ai~rDp~vw~dP~eF~PERFl~ 414 (489)
T KOG0156|consen 387 VLVNLWAIHRDPKVWEDPEEFKPERFLD 414 (489)
T ss_pred EEEeehhhhcCCccCCCccccChhhhcC
Confidence 5689999999999999999999999995
No 16
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.34 E-value=4.3e-13 Score=108.75 Aligned_cols=28 Identities=36% Similarity=0.774 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|++|+||++|+||++|+||||+.
T Consensus 390 V~~~~~~~h~d~~~~~dP~~F~PeRfl~ 417 (504)
T PLN00110 390 LSVNIWAIGRDPDVWENPEEFRPERFLS 417 (504)
T ss_pred EEEeHHHhcCChhhcCCcccCCcccccC
Confidence 5678999999999999999999999984
No 17
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.33 E-value=5.2e-13 Score=106.39 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=25.9
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|+++++++|+|+++|+||++|+||||+.
T Consensus 355 V~~~~~~~~~d~~~~~dP~~F~PeRfl~ 382 (452)
T PLN03141 355 VLAYFRSVHLDEENYDNPYQFNPWRWQE 382 (452)
T ss_pred EEEehHhccCCchhcCCccccCcccccC
Confidence 5688999999999999999999999973
No 18
>PLN02936 epsilon-ring hydroxylase
Probab=99.30 E-value=1.2e-12 Score=105.70 Aligned_cols=28 Identities=36% Similarity=0.813 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|+++++++|+||++|++|++|+||||+.
T Consensus 378 v~~~~~~~~rd~~~~~dP~~F~PeRwl~ 405 (489)
T PLN02936 378 IMISVYNIHRSPEVWERAEEFVPERFDL 405 (489)
T ss_pred EEecHHhccCChhhCCCccccCccccCC
Confidence 5688999999999999999999999984
No 19
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.30 E-value=1.3e-12 Score=105.91 Aligned_cols=28 Identities=36% Similarity=0.885 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|++||||++|++|++|+||||+.
T Consensus 398 v~~~~~~~h~d~~~~~dp~~F~PeRfl~ 425 (517)
T PLN02687 398 LLVNVWAIARDPEQWPDPLEFRPDRFLP 425 (517)
T ss_pred EEEecHHhcCCcccCCCcccCCchhcCC
Confidence 5689999999999999999999999984
No 20
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.29 E-value=1.2e-12 Score=106.50 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.8
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl~ 28 (108)
|.++.|++|||+++| +||++|+||||+.
T Consensus 395 V~~~~~~~~rd~~~~G~dp~~F~PeRwl~ 423 (502)
T PLN02426 395 VTYHPYAMGRMERIWGPDCLEFKPERWLK 423 (502)
T ss_pred EEEchHHhcCCccccCcChhhcCccccCC
Confidence 467899999999999 9999999999984
No 21
>PLN02290 cytokinin trans-hydroxylase
Probab=99.29 E-value=8.8e-13 Score=106.52 Aligned_cols=27 Identities=37% Similarity=0.920 Sum_probs=25.4
Q ss_pred CcccccccccCCCCC-CCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIY-PNPYVFDPERFR 27 (108)
Q Consensus 1 V~v~~~~~h~dp~~w-~~p~~F~PeRwl 27 (108)
|++++|++||||++| ++|++|+||||+
T Consensus 415 V~~~~~~~~rdp~~~~~dP~~F~PeRfl 442 (516)
T PLN02290 415 IWIPVLAIHHSEELWGKDANEFNPDRFA 442 (516)
T ss_pred EEecHHHhcCChhhhCCChhhcCccccC
Confidence 568999999999999 899999999997
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=99.28 E-value=1.9e-12 Score=106.23 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|++|+||++|++|++|+||||+.
T Consensus 415 V~~~~~~~~~dp~~~~~p~~F~PeRfl~ 442 (534)
T PLN03018 415 IHVCRPGLGRNPKIWKDPLVYEPERHLQ 442 (534)
T ss_pred EEEChHHhcCCcccCCCccccCCccCCC
Confidence 5688999999999999999999999984
No 23
>PLN02655 ent-kaurene oxidase
Probab=99.28 E-value=1.5e-12 Score=104.29 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.++.+++|||+++|++|++|+||||+.
T Consensus 362 v~~~~~~~~~d~~~~~~p~~F~PeR~~~ 389 (466)
T PLN02655 362 IAINIYGCNMDKKRWENPEEWDPERFLG 389 (466)
T ss_pred EEecHHHhcCCcccCCChhccCccccCC
Confidence 5688999999999999999999999974
No 24
>PLN02774 brassinosteroid-6-oxidase
Probab=99.26 E-value=1.9e-12 Score=103.52 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=25.9
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|+++++++|+||++|+||++|+||||+.
T Consensus 367 v~~~~~~~~rdp~~~~dP~~F~PeRfl~ 394 (463)
T PLN02774 367 IYVYTREINYDPFLYPDPMTFNPWRWLD 394 (463)
T ss_pred EEEehHHhcCCcccCCChhccCchhcCC
Confidence 5688999999999999999999999974
No 25
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.26 E-value=2.5e-12 Score=103.84 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=25.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.+++|++|+||++|++|++|+||||+.
T Consensus 397 v~~~~~~~h~d~~~~~dP~~F~PeRf~~ 424 (514)
T PLN03112 397 VFINTHGLGRNTKIWDDVEEFRPERHWP 424 (514)
T ss_pred EEEehHHhhCCcccCCChhhcCCcccCC
Confidence 5678999999999999999999999863
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.25 E-value=2.7e-12 Score=102.44 Aligned_cols=28 Identities=43% Similarity=0.800 Sum_probs=25.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.++.+++|+|+++|+||++|+||||+.
T Consensus 391 v~~~~~~~~rd~~~~~dP~~F~PeR~~~ 418 (490)
T PLN02302 391 VLAWFRQVHMDPEVYPNPKEFDPSRWDN 418 (490)
T ss_pred EEeeHHHhcCCcccCCCccccChhhcCC
Confidence 4678899999999999999999999973
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.24 E-value=2.6e-12 Score=102.97 Aligned_cols=27 Identities=33% Similarity=0.715 Sum_probs=25.1
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl 27 (108)
|.++++++|+|+++|++|++|+||||+
T Consensus 367 v~~~~~~~~rd~~~~~dP~~F~PeRfl 393 (463)
T PLN02196 367 VLPLFRNIHHSADIFSDPGKFDPSRFE 393 (463)
T ss_pred EEeeHHHhcCCchhcCCcCccChhhhc
Confidence 457889999999999999999999997
No 28
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.15 E-value=2.1e-11 Score=98.55 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=25.7
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|.++.+++|+||++|++|++|+||||+.
T Consensus 370 v~~~~~~~~~d~~~~~~p~~F~PeRfl~ 397 (472)
T PLN02987 370 VFASFRAVHLDHEYFKDARTFNPWRWQS 397 (472)
T ss_pred EEEehHHhhCCcccCCCccccCcccCCC
Confidence 4678899999999999999999999974
No 29
>KOG0159|consensus
Probab=99.11 E-value=2.2e-11 Score=100.08 Aligned_cols=29 Identities=34% Similarity=0.732 Sum_probs=25.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRVP 29 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~~ 29 (108)
|.+..|.+.+||.+|++|++|+|||||..
T Consensus 417 V~l~~~~~~r~~~~F~~p~~F~PeRWL~~ 445 (519)
T KOG0159|consen 417 VVLFLYVLGRNPAYFPDPEEFLPERWLKP 445 (519)
T ss_pred EEEeehhhccChhhCCCccccChhhhccc
Confidence 34778899999999999999999999953
No 30
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.98 E-value=1.5e-10 Score=92.23 Aligned_cols=27 Identities=44% Similarity=0.949 Sum_probs=24.8
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl 27 (108)
|++.+++.||||++|++|++|+|+||.
T Consensus 320 V~~~~~~anrDp~~f~~P~~F~p~R~~ 346 (411)
T COG2124 320 VLLSIGAANRDPEVFPDPDEFDPERFN 346 (411)
T ss_pred EEecHhhhcCChhhCCChhhcCCCCCC
Confidence 567889999999999999999999993
No 31
>KOG0684|consensus
Probab=98.85 E-value=1.4e-09 Score=88.55 Aligned_cols=29 Identities=41% Similarity=0.894 Sum_probs=24.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy14268 3 IPTYALHHDPEIYPNPYVFDPERFRVPRC 31 (108)
Q Consensus 3 v~~~~~h~dp~~w~~p~~F~PeRwl~~~~ 31 (108)
+..+-+|+||++|++|++|+|+||+.++.
T Consensus 380 lsP~~~hr~peif~dp~~Fk~dRf~~~~~ 408 (486)
T KOG0684|consen 380 LSPFLLHRDPEIFPDPEDFKPDRFLKDNG 408 (486)
T ss_pred eccccccCCccccCChhhCChhhccCCCc
Confidence 34455999999999999999999997643
No 32
>PLN02648 allene oxide synthase
Probab=98.72 E-value=5.3e-09 Score=85.36 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=25.6
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCC
Q psy14268 1 MFIPTYALHHDPEIYPNPYVFDPERFRV 28 (108)
Q Consensus 1 V~v~~~~~h~dp~~w~~p~~F~PeRwl~ 28 (108)
|+++.+.+|+||++|++|++|+|+||+.
T Consensus 378 V~~~~~~~hrdp~~~~dP~~F~PeRf~~ 405 (480)
T PLN02648 378 LFGYQPLVTRDPKVFDRPEEFVPDRFMG 405 (480)
T ss_pred EEEChHHHhCCcccCCCcceeCCCCCCC
Confidence 4578899999999999999999999974
No 33
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=35.39 E-value=16 Score=19.06 Aligned_cols=6 Identities=67% Similarity=1.364 Sum_probs=4.3
Q ss_pred CCCCCC
Q psy14268 21 FDPERF 26 (108)
Q Consensus 21 F~PeRw 26 (108)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 567776
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=34.42 E-value=26 Score=21.07 Aligned_cols=6 Identities=67% Similarity=1.221 Sum_probs=5.0
Q ss_pred CCCCCC
Q psy14268 22 DPERFR 27 (108)
Q Consensus 22 ~PeRwl 27 (108)
||||||
T Consensus 44 DPERWL 49 (59)
T PF08492_consen 44 DPERWL 49 (59)
T ss_pred CccccC
Confidence 788887
No 35
>KOG3506|consensus
Probab=32.19 E-value=21 Score=21.37 Aligned_cols=10 Identities=50% Similarity=1.218 Sum_probs=8.6
Q ss_pred cccCCCCCCC
Q psy14268 98 LPFGEGPRNC 107 (108)
Q Consensus 98 lPFg~G~R~C 107 (108)
-+||.|.|.|
T Consensus 12 ~kfg~GsrsC 21 (56)
T KOG3506|consen 12 RKFGQGSRSC 21 (56)
T ss_pred cccCCCCcce
Confidence 3699999998
No 36
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=31.73 E-value=20 Score=17.98 Aligned_cols=6 Identities=67% Similarity=1.364 Sum_probs=3.9
Q ss_pred CCCCCC
Q psy14268 21 FDPERF 26 (108)
Q Consensus 21 F~PeRw 26 (108)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 467776
Done!