RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14268
(108 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 46.5 bits (111), Expect = 3e-07
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ + YALH DPE++PNP FDPERF
Sbjct: 362 VIVNLYALHRDPEVFPNPEEFDPERF 387
Score = 45.3 bits (108), Expect = 9e-07
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF EN ++A+LPFG GPRNC+
Sbjct: 385 ERFLDENGKFRKSFAFLPFGAGPRNCL 411
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 37.4 bits (87), Expect = 5e-04
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ + A + DPE++P+P FDPERF
Sbjct: 320 VLLSIGAANRDPEVFPDPDEFDPERF 345
Score = 27.0 bits (60), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 93 PNYAYLPFGEGPRNCI 108
N A+LPFG GP C+
Sbjct: 345 FNNAHLPFGGGPHRCL 360
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 36.8 bits (85), Expect = 0.001
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 8 LHHDPEIYPNPYVFDPERFRV 28
+HH +I+ +P FDP RF V
Sbjct: 374 IHHSADIFSDPGKFDPSRFEV 394
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 36.2 bits (84), Expect = 0.001
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 7 ALHHDPEIYPNPYVFDPERFR--VPRCSYPHTH 37
+H DPE+YPNP FDP R+ P+ T
Sbjct: 397 QVHMDPEVYPNPKEFDPSRWDNYTPK---AGTF 426
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 33.7 bits (77), Expect = 0.012
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 75 DHEIALMERF---APENADNIPNYAYLPFGEGPRNCI 108
D E ER+ P + N++YLPFG GPR C+
Sbjct: 506 DAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCV 542
Score = 30.7 bits (69), Expect = 0.11
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+FI + LH P+ + + F+PER+
Sbjct: 490 IFISVWNLHRSPKHWDDAEKFNPERW 515
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 32.0 bits (73), Expect = 0.038
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ I Y + D + + NP +DPERF
Sbjct: 362 IAINIYGCNMDKKRWENPEEWDPERF 387
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 31.7 bits (72), Expect = 0.050
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ + +A+ DP+++ NP F PERF
Sbjct: 390 LSVNIWAIGRDPDVWENPEEFRPERF 415
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 30.9 bits (70), Expect = 0.090
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ I Y +H PE++ F PERF
Sbjct: 378 IMISVYNIHRSPEVWERAEEFVPERF 403
Score = 30.9 bits (70), Expect = 0.11
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 82 ERFAPENADNIPN-----YAYLPFGEGPRNCI 108
ERF + +PN + Y+PF GPR C+
Sbjct: 401 ERFDLDGP--VPNETNTDFRYIPFSGGPRKCV 430
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 30.8 bits (70), Expect = 0.090
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ I Y+L + + + NP FDP RF
Sbjct: 385 ILINYYSLGRNEKYFENPEQFDPSRF 410
Score = 29.7 bits (67), Expect = 0.28
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 29/79 (36%)
Query: 58 LRMRAIYPTMLTYRSEKDHEIALMERFAPENADNIPNY---------------------- 95
LR + + P L + D I F P++A + NY
Sbjct: 353 LRYKPVSPFGLPRSTSNDIIIG-GGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFL 411
Query: 96 ------AYLPFGEGPRNCI 108
A++PF GPRNC+
Sbjct: 412 NPDSNDAFMPFSIGPRNCV 430
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 30.2 bits (68), Expect = 0.18
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MFIPTYALHHDPEIY-PNPYVFDPERF 26
++IP A+HH E++ + F+P+RF
Sbjct: 415 IWIPVLAIHHSEELWGKDANEFNPDRF 441
Score = 28.2 bits (63), Expect = 0.72
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+RFA P ++PF GPRNCI
Sbjct: 439 DRFAGRPF--APGRHFIPFAAGPRNCI 463
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 29.4 bits (66), Expect = 0.28
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
+A+ DPE +P+P F P+RF
Sbjct: 403 WAIARDPEQWPDPLEFRPDRF 423
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 29.0 bits (65), Expect = 0.47
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+++ T +++DP +YP+P F+P R+
Sbjct: 367 IYVYTREINYDPFLYPDPMTFNPWRW 392
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 28.2 bits (63), Expect = 0.89
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 7 ALHHDPEIYPNPYVFDPERFR 27
++H D E Y NPY F+P R++
Sbjct: 361 SVHLDEENYDNPYQFNPWRWQ 381
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 27.5 bits (61), Expect = 1.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPER 25
+FI T+ L + +I+ + F PER
Sbjct: 397 VFINTHGLGRNTKIWDDVEEFRPER 421
>gnl|CDD|215345 PLN02641, PLN02641, anthranilate phosphoribosyltransferase.
Length = 343
Score = 27.0 bits (60), Expect = 1.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 19 YVFDPERFRVPRCS 32
+ FDP F +PRC+
Sbjct: 245 FSFDPLDFGIPRCT 258
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional.
Length = 298
Score = 26.9 bits (59), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 15 YPNPYVFDPERFRV 28
YPNPY+FD + RV
Sbjct: 63 YPNPYLFDRDVKRV 76
>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog;
Provisional.
Length = 344
Score = 26.3 bits (58), Expect = 3.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 43 KSILIHTFLIQRDLPLRMR------AIYPTMLTYRSEKDHEIALMERF 84
K+ L HT + LP M A T T+R ++ IA ERF
Sbjct: 139 KTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA--ERF 184
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 26.2 bits (58), Expect = 4.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 82 ERFAPENAD---NIPNYAYLPFGEGPRNC 107
ERF E A N ++ +LPFG G R+C
Sbjct: 417 ERFLEEEAKVEANGNDFRFLPFGVGRRSC 445
Score = 25.8 bits (57), Expect = 4.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 8 LHHDPEIYPNPYVFDPERF 26
L ++PE++ NP F PERF
Sbjct: 401 LANNPELWKNPEEFRPERF 419
>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity and
contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability,
thereby serving as surveillance & "house-cleaning"
enzymes. Substrate specificity is used to define
families within the superfamily. Differences in
substrate specificity are determined by the N-terminal
extension or by residues in variable loop regions.
Mechanistically, substrate hydrolysis occurs by a
nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 127
Score = 25.4 bits (56), Expect = 4.6
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 21 FDPER--FRVPRCSYPHTHYIMILKSILIHTFLIQRD 55
F R FR + Y + + I ++Q++
Sbjct: 61 FSELRPLFRYFFEAEGFDDYYLFYADVEIGKLILQKE 97
>gnl|CDD|201519 pfam00943, Alpha_E2_glycop, Alphavirus E2 glycoprotein. E2 forms a
heterodimer with E1. The virus spikes are made up of 80
trimers of these heterodimers (sindbis virus).
Length = 403
Score = 26.1 bits (58), Expect = 4.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 54 RDLPLRMRAIYPTMLTYRS 72
R++ L + +PT+LT RS
Sbjct: 267 REVTLHLHPDHPTLLTTRS 285
>gnl|CDD|236562 PRK09552, mtnX, 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase; Reviewed.
Length = 219
Score = 25.3 bits (56), Expect = 6.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 72 SEKDHEIALMERFAPENADNIPN 94
+ D+ IA+M++FAP + + +
Sbjct: 15 TNNDNIIAIMKKFAPPEWEELKD 37
>gnl|CDD|222880 PHA02564, V, virion protein; Provisional.
Length = 141
Score = 25.2 bits (55), Expect = 7.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 61 RAIYPTMLTYRSEKDHEI----ALMERFAPENADNIPNYA 96
RA+ +L YR K + + +L+ R+AP N ++ YA
Sbjct: 51 RALAKLLLNYR--KVYGLRTVESLIARWAPSNENDTRAYA 88
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 25.4 bits (55), Expect = 7.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 93 PNYAYLPFGEGPRNCI 108
P+Y ++ F GPR C+
Sbjct: 433 PSYKFMAFNSGPRTCL 448
>gnl|CDD|233393 TIGR01392, homoserO_Ac_trn, homoserine O-acetyltransferase. This
family describes homoserine-O-acetyltransferase, an
enzyme of methionine biosynthesis. This model has been
rebuilt to identify sequences more broadly, including a
number of sequences suggested to be homoserine
O-acetyltransferase based on proximity to other Met
biosynthesis genes [Amino acid biosynthesis, Aspartate
family].
Length = 351
Score = 25.3 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 59 RMRAIYPTMLTYRSEKDHEIALMERFAPENADN 91
RM A LTYRS E ++ ERF
Sbjct: 204 RMLA----HLTYRS----EESMAERFGRAPQSG 228
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.145 0.472
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,948,066
Number of extensions: 510409
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 54
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)