RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14268
(108 letters)
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 60.3 bits (147), Expect = 3e-12
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF+ +N DNI Y Y PFG GPRNCI
Sbjct: 395 ERFSKKNKDNIDPYIYTPFGSGPRNCI 421
Score = 59.9 bits (146), Expect = 4e-12
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERF 26
IP+YALH DP+ + P F PERF
Sbjct: 373 MIPSYALHRDPKYWTEPEKFLPERF 397
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 55.3 bits (133), Expect = 2e-10
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTH 37
++ DP+I+ F PERF H
Sbjct: 389 LYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRH 425
Score = 45.3 bits (107), Expect = 5e-07
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 82 ERFAPENADNIPNYAYLPFG-------EGPRNCI 108
ERF E + + + G G + C
Sbjct: 412 ERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCA 445
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 54.9 bits (132), Expect = 2e-10
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+F DP+++ P + P+RF
Sbjct: 372 LFGYQPFATKDPKVFDRPEEYVPDRF 397
Score = 37.5 bits (87), Expect = 2e-04
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 12/36 (33%)
Query: 82 ERFAPENADNIPNYAYLPFGEGP---------RNCI 108
+RF + Y+ + GP + C
Sbjct: 395 DRFVGDGE---ALLKYVWWSNGPETESPTVENKQCA 427
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 53.3 bits (128), Expect = 1e-09
Identities = 18/108 (16%), Positives = 25/108 (23%), Gaps = 49/108 (45%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRM 60
+ P + DPEIY +P VF RF P S Y
Sbjct: 374 LLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYK--------------------- 412
Query: 61 RAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
+P+G G +C+
Sbjct: 413 ----------------------------DGKRLKNYNMPWGAGHNHCL 432
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 52.7 bits (127), Expect = 1e-09
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+R+ PE A N+P YA PF G R C
Sbjct: 385 DRWLPERAANVPKYAMKPFSAGKRKCP 411
Score = 49.6 bits (119), Expect = 2e-08
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTH 37
+ YA+ DP+ Y + FDP+R+ R + +
Sbjct: 362 IIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKY 398
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 52.2 bits (126), Expect = 2e-09
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ TY + + +P F+P+RF
Sbjct: 343 LLFSTYVMGRMDTYFEDPLTFNPDRF 368
Score = 49.5 bits (119), Expect = 2e-08
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+RF P P + Y PF G R+CI
Sbjct: 366 DRFGPGAP--KPRFTYFPFSLGHRSCI 390
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 51.6 bits (124), Expect = 3e-09
Identities = 21/107 (19%), Positives = 27/107 (25%), Gaps = 49/107 (45%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRMR 61
+ +H DPEIYP+P F +R+ T Y LK
Sbjct: 371 ALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKL----------------- 413
Query: 62 AIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
Y Y+PFG G C
Sbjct: 414 --------------------------------KYYYMPFGSGATICP 428
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 50.7 bits (122), Expect = 6e-09
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 3 IPTYALHHDPEIYPNPYVFDPERFRVPRCSY 33
HHD E +P P +DPER ++
Sbjct: 355 CSPLLSHHDEEAFPEPRRWDPERDEKVEGAF 385
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
R+ PE + A++ FG G CI
Sbjct: 371 RRWDPERDEK-VEGAFIGFGAGVHKCI 396
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 48.4 bits (116), Expect = 4e-08
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+R+ +N + +AY+PFG G CI
Sbjct: 376 DRYLQDNPASGEKFAYVPFGAGRHRCI 402
Score = 48.1 bits (115), Expect = 5e-08
Identities = 3/34 (8%), Positives = 10/34 (29%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPH 35
+ + + F+P+R+ +
Sbjct: 354 CVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGE 387
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 48.1 bits (115), Expect = 5e-08
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 17/67 (25%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERF-------RVPRCSY------PHT----HYIMILKS 44
H DP++YP+P FDPERF P ++ + +
Sbjct: 343 SYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARLEMK 402
Query: 45 ILIHTFL 51
+ +
Sbjct: 403 LFATRLI 409
Score = 42.3 bits (100), Expect = 6e-06
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 82 ERFAPEN-ADNIPNYAYLPFGEGPRNCI 108
ERF P+ A + P +A++PFG G R C+
Sbjct: 365 ERFTPDGSATHNPPFAHVPFGGGLRECL 392
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 47.7 bits (114), Expect = 8e-08
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERFRVPR 30
+ PE +P+P+ F P R+ PR
Sbjct: 346 AASPAISNRIPEDFPDPHDFVPARYEQPR 374
Score = 43.4 bits (103), Expect = 2e-06
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 82 ERFAP-ENADNIPNYAYLPFGEGPRNCI 108
R+ D + + ++PFG G C+
Sbjct: 368 ARYEQPRQEDLLNRWTWIPFGAGRHRCV 395
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 47.4 bits (113), Expect = 1e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERF 26
+ Y +HDP ++ +P F PERF
Sbjct: 315 LLDLYGTNHDPRLWDHPDEFRPERF 339
Score = 30.0 bits (68), Expect = 0.097
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 7/31 (22%)
Query: 82 ERFAPENADNIPNYAYLPFGEGP----RNCI 108
ERFA + +P G G C
Sbjct: 337 ERFAERE---ENLFDMIPQGGGHAEKGHRCP 364
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 47.0 bits (112), Expect = 1e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERFRVPR 30
+ Y +HD + +P F PERFR
Sbjct: 313 VLDLYGSNHDAATWADPQEFRPERFRAWD 341
Score = 30.8 bits (70), Expect = 0.058
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 82 ERFAPENADNIPNYAYLPFGEGP----RNCI 108
ERF + ++ ++P G G C
Sbjct: 335 ERFRAWD---EDSFNFIPQGGGDHYLGHRCP 362
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 46.9 bits (112), Expect = 1e-07
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 1 MFIPTYALHHDPEIYP-NPYVFDPERF 26
+ + LH D I+ + F PERF
Sbjct: 353 LMVLIPQLHRDKTIWGDDVEEFRPERF 379
Score = 46.9 bits (112), Expect = 2e-07
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF EN IP +A+ PFG G R CI
Sbjct: 377 ERF--ENPSAIPQHAFKPFGNGQRACI 401
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF E P+ Y PFG G R C+
Sbjct: 313 ERFLEERG--TPSGRYFPFGLGQRLCL 337
Score = 42.6 bits (101), Expect = 4e-06
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHT 36
+ + Y +P+ F PERF R +
Sbjct: 292 LVLSPYVTQRLH--FPDGEAFRPERFLEERGTPSGR 325
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 46.6 bits (111), Expect = 2e-07
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 82 ERFAPEN-ADNIPNYAYLPFGEGPRNCI 108
F EN A N+P + PFG GPR C
Sbjct: 411 NEFTLENFAKNVPYRYFQPFGFGPRGCA 438
Score = 45.8 bits (109), Expect = 3e-07
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERF--RVPRCSY 33
+ +H E +P P F E F VP +
Sbjct: 395 ILNIGRMHR-LEFFPKPNEFTLENFAKNVPYRYF 427
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 45.0 bits (107), Expect = 7e-07
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERF 26
+ T L + + + + F PER+
Sbjct: 384 TLNTQVLGSSEDNFEDSHKFRPERW 408
Score = 40.8 bits (96), Expect = 2e-05
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ER+ + I +A+LPFG G R CI
Sbjct: 406 ERWLQKE-KKINPFAHLPFGIGKRMCI 431
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 44.6 bits (106), Expect = 8e-07
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 2 FIPTYALHHDPEIYPNPYVFDPERF 26
+ YAL +P + +P FDP R+
Sbjct: 376 QVAIYALGREPTFFFDPENFDPTRW 400
Score = 41.9 bits (99), Expect = 8e-06
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
R+ ++ NI + L FG G R C+
Sbjct: 398 TRWLSKD-KNITYFRNLGFGWGVRQCL 423
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 43.8 bits (104), Expect = 1e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 4 PTYALHHDPEIYPNPYVFDPERF 26
P + DP+I+ P +F +RF
Sbjct: 358 PFISPQMDPQIHQQPEMFQFDRF 380
Score = 30.7 bits (70), Expect = 0.072
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 9/36 (25%)
Query: 82 ERFAPENAD---------NIPNYAYLPFGEGPRNCI 108
+RF + Y +P+G C
Sbjct: 378 DRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCP 413
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
+ALHH+ + + P F PERF
Sbjct: 379 WALHHNEKEWHQPDQFMPERF 399
Score = 28.3 bits (64), Expect = 0.43
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 82 ERFAPE-------NADNIPNYAYLPFGEGPRNCI 108
++F PE P+ +YLPFG GPR+CI
Sbjct: 392 DQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCI 425
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 39.9 bits (94), Expect = 4e-05
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
+ ++HDPE++ +P F PERF
Sbjct: 388 WQVNHDPELWEDPSEFRPERF 408
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 82 ERFAPENA---DNIPNYAYLPFGEGPRNCI 108
ERF + + + + FG G R CI
Sbjct: 406 ERFLTADGTAINKPLSEKMMLFGMGKRRCI 435
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 39.8 bits (94), Expect = 4e-05
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
++ D ++ P+ F PE F
Sbjct: 378 SSVLKDEAVWEKPFRFHPEHF 398
Score = 28.3 bits (64), Expect = 0.42
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
E F + A+LPF G R C+
Sbjct: 396 EHFLDAQGHFVKPEAFLPFSAGRRACL 422
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 39.9 bits (94), Expect = 5e-05
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
++++HDP +PNP FDP RF
Sbjct: 385 WSVNHDPLKWPNPENFDPARF 405
Score = 26.0 bits (58), Expect = 2.4
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 7/34 (20%)
Query: 82 ERFAPE-------NADNIPNYAYLPFGEGPRNCI 108
E F P + + F G R CI
Sbjct: 398 ENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCI 431
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 39.4 bits (93), Expect = 5e-05
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
++ +D + +P+P F PE F
Sbjct: 373 DSVLYDNQEFPDPEKFKPEHF 393
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
Y++H D + + +P VF PERF
Sbjct: 379 YSVHFDEKYWRDPEVFHPERF 399
Score = 31.8 bits (73), Expect = 0.029
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF + A +PF G R+C+
Sbjct: 397 ERFLDSSGYFAKKEALVPFSLGRRHCL 423
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 39.5 bits (93), Expect = 6e-05
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
++ HD + +PNP +FDP F
Sbjct: 375 TSVLHDNKEFPNPEMFDPHHF 395
Score = 25.2 bits (56), Expect = 5.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
F E + + ++PF G R C+
Sbjct: 393 HHFLDEGGNFKKSKYFMPFSAGKRICV 419
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 39.1 bits (92), Expect = 7e-05
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
++ DP + NP F+P+ F
Sbjct: 374 GSVLRDPSFFSNPQDFNPQHF 394
Score = 25.2 bits (56), Expect = 5.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+ F E + A++PF G RNC
Sbjct: 392 QHFLNEKGQFKKSDAFVPFSIGKRNCF 418
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 39.1 bits (92), Expect = 9e-05
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
+ HDP + P F+P F
Sbjct: 374 SSALHDPRYFETPNTFNPGHF 394
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 38.7 bits (91), Expect = 9e-05
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 6 YALHHDPEIYPNPYVFDPERF 26
H D ++ P+ F P+RF
Sbjct: 388 QGAHLDETVWEQPHEFRPDRF 408
Score = 27.6 bits (62), Expect = 0.72
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 82 ERFAPEN-ADNIPNYAYLPFGEGPRNCI 108
F P+ + N + L FG G R C+
Sbjct: 401 HEFRPDRFLEPGANPSALAFGCGARVCL 428
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 29.5 bits (67), Expect = 0.14
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 10 HDPEIYPNPYVFDPERFRVPR 30
D E++ NP F+ R P+
Sbjct: 321 RDEEVFENPDEFNMNRKWPPQ 341
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 28.4 bits (64), Expect = 0.38
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D ++ P FD +R
Sbjct: 309 NFDEAVFCEPEKFDVQR 325
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 28.3 bits (64), Expect = 0.45
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D E++ +P F P+R
Sbjct: 286 NRDEEVFKDPDSFIPDR 302
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 27.9 bits (63), Expect = 0.52
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D + P +F R
Sbjct: 265 NRDETFFDEPDLFKIGR 281
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 27.9 bits (63), Expect = 0.53
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D E++ + F P+R
Sbjct: 286 NRDEEVFHDGEKFIPDR 302
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 28.0 bits (63), Expect = 0.60
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DPE++ +P VFD R
Sbjct: 312 NRDPEVFDDPDVFDHTR 328
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 28.0 bits (63), Expect = 0.62
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D + + +P FDP R
Sbjct: 320 NRDSDAHDDPDRFDPSR 336
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 27.6 bits (62), Expect = 0.73
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 9 HHDPEIYPNPYVFDPER 25
H DP I P FDP+R
Sbjct: 335 HRDPTIVGAPDRFDPDR 351
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 27.7 bits (62), Expect = 0.74
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 9 HHDPEIYPNPYVFDPERFRVPRCSYPH-THY 38
+ DPE++ P D +R R H H
Sbjct: 301 NRDPEVFAEPDRLDVDRPDADRALSAHRGHP 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.75
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 9 HHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRMRAIYPTML 68
+ +I VF+ C IL I ++ +D ++ T+L
Sbjct: 16 YQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 69 TYRSEKDHEIALMERFAPENADNIPNYAYL 98
+ + E ++++F E NY +L
Sbjct: 73 SKQEE------MVQKFV-EEVLR-INYKFL 94
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 27.3 bits (61), Expect = 0.90
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 9 HHDPEIYPNPYVFDPER 25
D P P+ D R
Sbjct: 333 GLDDAANPEPWKLDFSR 349
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 27.2 bits (61), Expect = 0.93
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DP + +P +D R
Sbjct: 330 NRDPRRWDDPDRYDITR 346
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 27.2 bits (61), Expect = 0.98
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DP I+ NP VFD R
Sbjct: 313 NRDPSIFTNPDVFDITR 329
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 27.2 bits (61), Expect = 0.99
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 9 HHDPEIYPNPYVFDPER 25
D + +P ER
Sbjct: 310 SRDRSAFDSPDNIVIER 326
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 27.3 bits (61), Expect = 1.0
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 9 HHDPEIYPNPYVFDPER 25
D + +P D R
Sbjct: 334 GLDDRHHDDPMTVDLSR 350
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 27.3 bits (61), Expect = 1.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DP + +P F P R
Sbjct: 333 NRDPAEFDDPDTFLPGR 349
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 27.3 bits (61), Expect = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DPE + P VF+ R
Sbjct: 348 NRDPEAFEQPDVFNIHR 364
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 27.2 bits (61), Expect = 1.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 10 HDPEIYPNPYVFDPERFRVPR 30
D E+ P F +R R +
Sbjct: 345 RDDEVIDRPEEFIIDRPRPRQ 365
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 27.3 bits (61), Expect = 1.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 9 HHDPEIYPNPYVFDPER 25
+HDP +P P FDP R
Sbjct: 368 NHDPAQFPEPRKFDPTR 384
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 27.3 bits (61), Expect = 1.1
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D E++ +P+ F+ R
Sbjct: 345 NFDEEVFQDPFTFNILR 361
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 9 HHDPEIYPNPYVFDPER 25
D ++ P VFD R
Sbjct: 334 LRDGTVFSRPDVFDVRR 350
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 27.2 bits (61), Expect = 1.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DP +P+P V D R
Sbjct: 333 NRDPARFPDPDVLDVHR 349
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 26.9 bits (60), Expect = 1.3
Identities = 4/17 (23%), Positives = 4/17 (23%)
Query: 9 HHDPEIYPNPYVFDPER 25
D P D R
Sbjct: 327 GLDERENACPMHVDFSR 343
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 26.9 bits (60), Expect = 1.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D + +P+ FD R
Sbjct: 354 NRDESKFADPWTFDLAR 370
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 26.8 bits (60), Expect = 1.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D +Y +P D R
Sbjct: 324 NRDGTVYEDPDALDIHR 340
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 26.9 bits (60), Expect = 1.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 10 HDPEIYPNPYVFDPER 25
D E++ NP FD R
Sbjct: 347 RDEEVFSNPDEFDITR 362
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 26.8 bits (60), Expect = 1.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 10 HDPEIYPNPYVFDPER 25
D + Y NP +FD R
Sbjct: 323 RDAKAYENPDIFDARR 338
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 26.4 bits (59), Expect = 1.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 10 HDPEIYPNPYVFDPER 25
HDPE + +P D R
Sbjct: 330 HDPEQFDDPERVDFHR 345
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 26.4 bits (59), Expect = 1.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 10 HDPEIYPNPYVFDPER 25
DPE +PNP + +R
Sbjct: 314 FDPEHFPNPGSIELDR 329
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 26.4 bits (59), Expect = 1.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 10 HDPEIYPNPYVFDPER 25
DP ++ +P V D ER
Sbjct: 326 WDPAVFKDPAVLDVER 341
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 26.5 bits (59), Expect = 2.0
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 10 HDPEIYPNPYVFDPER 25
P+ + + FD R
Sbjct: 324 RHPDWHEDADTFDATR 339
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 26.4 bits (59), Expect = 2.0
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 10 HDPEIYPNPYVFDPER 25
DP P FD R
Sbjct: 318 FDPAFVEEPERFDITR 333
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ DP Y P FD ER
Sbjct: 312 NRDPRRYDRPDDFDIER 328
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.0
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 8/28 (28%)
Query: 73 EKDHEIALMER----FAPENADNIPNYA 96
EK + ++ +A ++A P A
Sbjct: 18 EK-QALKKLQASLKLYADDSA---PALA 41
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 26.4 bits (59), Expect = 2.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 10 HDPEIYPNPYVFDPER 25
DPE++P+P D ER
Sbjct: 323 RDPEVFPDPDRIDFER 338
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 26.4 bits (59), Expect = 2.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D + P+P V D R
Sbjct: 325 NRDEALTPDPDVLDANR 341
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 26.5 bits (59), Expect = 2.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 10 HDPEIYPNPYVFDPER 25
DP + P+ D R
Sbjct: 317 RDPALAPDVDRLDVTR 332
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 26.0 bits (58), Expect = 2.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 9 HHDPEIYPNPYVFDPERFRVPR 30
+ DP + P +R P
Sbjct: 312 NLDPASFEAPEEVRFDRGLAPI 333
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 26.1 bits (58), Expect = 2.4
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 9 HHDPEIYPNPYVFDPERFRVPRCSYPH 35
H DP ++ + FD + P
Sbjct: 333 HRDPRVFADADRFDITV-KREA---PS 355
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 26.1 bits (58), Expect = 2.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 10 HDPEIYPNPYVFDPER 25
DP+++P+P D +R
Sbjct: 326 RDPDVFPDPDRIDLDR 341
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 26.1 bits (58), Expect = 2.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 10 HDPEIYPNPYVFDPER 25
D +P+ D +R
Sbjct: 336 RDQAQFPDADRIDVDR 351
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 26.0 bits (58), Expect = 2.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 10 HDPEIYPNPYVFDPER 25
DP+ +P+P+ FD R
Sbjct: 321 RDPKQFPDPHRFDVTR 336
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 26.1 bits (58), Expect = 2.6
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 10 HDPEIYPNPYVFDPER 25
D + P FD R
Sbjct: 323 FDERAFTGPEEFDAAR 338
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 26.1 bits (58), Expect = 2.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 9 HHDPEIYPNPYVFDPER 25
H PE +P+P+ FD R
Sbjct: 343 HRTPERFPDPHRFDIRR 359
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR
{Saccharomyces cerevisiae} PDB: 2khh_A
Length = 57
Score = 24.6 bits (53), Expect = 2.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 50 FLIQRDLPLRMRAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPF 100
L + L ++ A Y ML +S ++E+A ++ F + + IP A++ F
Sbjct: 9 LLNKLHLETKLNAEYTFMLAEQSNWNYEVA-IKGFQ-SSMNGIPREAFVQF 57
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 26.0 bits (58), Expect = 2.9
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 9 HHDPEIYPNPYVFDPER 25
+ D + P P D R
Sbjct: 316 NRDADWMPEPDRLDITR 332
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding,
cytosolic, immune system-DNA complex; HET: DNA; 2.50A
{Homo sapiens} PDB: 3rn2_A*
Length = 208
Score = 25.3 bits (55), Expect = 5.0
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 39 IMILKSILIHTFLIQRDLPLRMRAIYPTMLTYRSEKDHEIALMERFAPENADNIPNY 95
+M+LK+ TF Q A T + K L ++F P+ I Y
Sbjct: 17 VMVLKAKKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARY 73
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 24.8 bits (54), Expect = 6.4
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 11 DPEIYPNPYVFDPE--RFRVPRCSYPHTHYI 39
E NP + D + + R R +PH YI
Sbjct: 60 TKEETLNPIIQDTKKGKLRFVRNCFPHHGYI 90
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein;
HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A
3muw_U 1z8y_A 1z8y_B
Length = 750
Score = 24.6 bits (53), Expect = 8.6
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 54 RDLPLRMRAIYPTMLTYRS 72
+ + L++ + T+LT R
Sbjct: 281 KHISLQLDTDHLTLLTTRR 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.472
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,838,342
Number of extensions: 97738
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 127
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)