RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14268
(108 letters)
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 39.3 bits (90), Expect = 2e-05
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
F N N ++PF G R C+
Sbjct: 384 GHFLDANGALKRNEGFMPFSLGKRICL 410
Score = 37.3 bits (85), Expect = 1e-04
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIM 40
+F + HDP + P F+P F + M
Sbjct: 361 VFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFM 400
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 39.3 bits (90), Expect = 3e-05
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 34 PHTHYIMILKSILIHTFLIQRDLPLRMRAIYPTMLTYRSEK---DHEIALMERFAPENAD 90
+ + + + +P + + P+ +R K + E L ERF+ +N D
Sbjct: 339 LFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD 398
Query: 91 NIPNYAYLPFGEGPRNCI 108
NI Y Y PFG GPRNCI
Sbjct: 399 NIDPYIYTPFGSGPRNCI 416
Score = 35.1 bits (79), Expect = 7e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ IP+YALH DP+ + P F PERF
Sbjct: 367 VMIPSYALHRDPKYWTEPEKFLPERF 392
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 38.2 bits (87), Expect = 7e-05
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
F E + + ++PF G R C+
Sbjct: 385 HHFLDEGGNFKKSKYFMPFSAGKRICV 411
Score = 35.5 bits (80), Expect = 5e-04
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIM 40
+ I ++ HD + +PNP +FDP F ++ + Y M
Sbjct: 362 ILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFM 401
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 37.8 bits (86), Expect = 8e-05
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIM 40
+ Y++H D + + +P VF PERF + ++
Sbjct: 361 VITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALV 400
Score = 37.0 bits (84), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF + A +PF G R+C+
Sbjct: 384 ERFLDSSGYFAKKEALVPFSLGRRHCL 410
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 34.0 bits (76), Expect = 0.002
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27
+ + + + D E++ NP FD RF
Sbjct: 338 IMLSYPSANRDEEVFSNPDEFDITRFP 364
Score = 26.7 bits (57), Expect = 0.55
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+ F +L FG G C+
Sbjct: 356 DEFDITR----FPNRHLGFGWGAHMCL 378
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 33.2 bits (74), Expect = 0.004
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYP 34
+ + + D E++ NP F+ R P+
Sbjct: 307 IIASNQSANRDEEVFENPDEFNMNRKWPPQDPLG 340
Score = 26.7 bits (57), Expect = 0.59
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+ F P L FG G CI
Sbjct: 325 DEFNMNRK--WPPQDPLGFGFGDHRCI 349
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 33.1 bits (74), Expect = 0.004
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF EN IP +A+ PFG G R CI
Sbjct: 375 ERF--ENPSAIPQHAFKPFGNGQRACI 399
Score = 32.0 bits (71), Expect = 0.010
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 1 MFIPTYALHHDPEIY-PNPYVFDPERFRVPRCSYPHTH 37
+ + LH D I+ + F PERF P H
Sbjct: 351 LMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAF 388
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 31.3 bits (69), Expect = 0.014
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVP 29
+ + D + P+P V D R V
Sbjct: 314 VLCSILMANRDEALTPDPDVLDANRAAVS 342
Score = 27.0 bits (58), Expect = 0.46
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 6/108 (5%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRM 60
+ + ER Y + + + + +
Sbjct: 253 FGVLALLDNPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGD 312
Query: 61 RAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
+ ++ R E + + + FG G C+
Sbjct: 313 YVLCSILMANRDEALTPDP--DVLDANR----AAVSDVGFGHGIHYCV 354
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 31.3 bits (69), Expect = 0.016
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
ERF E P+ Y PFG G R C+
Sbjct: 313 ERFLEERGT--PSGRYFPFGLGQRLCL 337
Score = 23.6 bits (49), Expect = 6.4
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTH 37
+ +P+ F PERF R + +
Sbjct: 290 TTLVLSPYVTQRLHFPDGEAFRPERFLEERGTPSGRY 326
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 31.0 bits (68), Expect = 0.021
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 82 ERF-APENADNIPNYAYLPFGEGPRNCI 108
R+ P D + + ++PFG G C+
Sbjct: 364 ARYEQPRQEDLLNRWTWIPFGAGRHRCV 391
Score = 29.1 bits (63), Expect = 0.11
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMI 41
+ + PE +P+P+ F P R+ PR + I
Sbjct: 341 VAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWI 381
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 30.9 bits (68), Expect = 0.024
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27
+ A + P+ + + FD R
Sbjct: 309 ILASYAAANRHPDWHEDADTFDATRTV 335
Score = 26.3 bits (56), Expect = 0.79
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+ F +L FG G C+
Sbjct: 327 DTFDATR----TVKEHLAFGHGVHFCL 349
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 30.6 bits (67), Expect = 0.032
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27
+ + A + DP+ +P+P+ FD R
Sbjct: 310 VLVANGAANRDPKQFPDPHRFDVTRDT 336
Score = 27.9 bits (60), Expect = 0.26
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
RF +L FG+G C+
Sbjct: 328 HRFDVTR----DTRGHLSFGQGIHFCM 350
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 29.4 bits (64), Expect = 0.076
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVP 29
+ A + DP + P+ D R +P
Sbjct: 304 VICSLPAANRDPALAPDVDRLDVTREPIP 332
Score = 27.1 bits (58), Expect = 0.43
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 6/108 (5%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRM 60
+ + H + +R Y Y + L +++
Sbjct: 243 LGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGD 302
Query: 61 RAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
I R +R ++ FG G +C+
Sbjct: 303 SVICSLPAANRDPALAPDV--DRLDVTR----EPIPHVAFGHGVHHCL 344
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 28.8 bits (63), Expect = 0.12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERF 26
+ + Y +HDP ++ +P F PERF
Sbjct: 309 VLLDLYGTNHDPRLWDHPDEFRPERF 334
Score = 26.5 bits (57), Expect = 0.75
Identities = 11/109 (10%), Positives = 23/109 (21%), Gaps = 10/109 (9%)
Query: 7 ALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRMRAIYPT 66
H + + V + + + + +
Sbjct: 254 HEHPKYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDL 313
Query: 67 MLTYRSEKDHEIALM---ERFAPENADNIPNYAYLPFGEG----PRNCI 108
T + + ERFA + + +P G G C
Sbjct: 314 YGTNHDPRLWDHPDEFRPERFAEREENL---FDMIPQGGGHAEKGHRCP 359
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 28.6 bits (62), Expect = 0.15
Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 3/108 (2%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRM 60
+ +L P++ + L + D+ +R
Sbjct: 241 LTTALISLIQRPQLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRK 300
Query: 61 RAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
+ +L + + + ++L FG G C
Sbjct: 301 GELVLVLLEGANFDPEHFPNPGSIELDRPNP---TSHLAFGRGQHFCP 345
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 28.3 bits (61), Expect = 0.20
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27
+F+ + D ++ P VFD R
Sbjct: 311 VFLLIPSALRDGTVFSRPDVFDVRRDT 337
Score = 26.4 bits (56), Expect = 0.74
Identities = 12/108 (11%), Positives = 23/108 (21%), Gaps = 4/108 (3%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRM 60
+ L PE + + I L ++
Sbjct: 248 IAFAVLNLLRSPEALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKK 307
Query: 61 RAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
+ ++ + + F A L +G GP C
Sbjct: 308 GEMVFLLIPSALRDGTVFSRPDVFDVRR----DTSASLAYGRGPHVCP 351
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 27.8 bits (60), Expect = 0.29
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+RF ++ FG GP C
Sbjct: 326 DRFDLTRT---SGNRHISFGHGPHVCP 349
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 27.1 bits (58), Expect = 0.49
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFR 27
+++ A + DPE++P+P D ER
Sbjct: 307 VYVSYLAANRDPEVFPDPDRIDFERSP 333
Score = 26.3 bits (56), Expect = 0.96
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 82 ERFAPENADNIPNYAYLPFGEGPRNCI 108
+R E ++ FG GP C
Sbjct: 325 DRIDFER----SPNPHVSFGFGPHYCP 347
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 26.2 bits (56), Expect = 0.89
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVP 29
+ +P D P D R +V
Sbjct: 308 ILLPQMLSGLDERENACPMHVDFSRQKVS 336
Score = 25.5 bits (54), Expect = 1.8
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 6/108 (5%)
Query: 1 MFIPTYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRM 60
+ L PE + + + L
Sbjct: 247 LSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGD 306
Query: 61 RAIYPTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
+ + P ML+ E+++ ++ FG G C+
Sbjct: 307 QILLPQMLSGLDERENACP--MHVDFSR----QKVSHTTFGHGSHLCL 348
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 25.6 bits (54), Expect = 1.8
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 93 PNYAYLPFGEGPRNCI 108
+L FG G C+
Sbjct: 303 TPNPHLSFGSGIHLCL 318
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 24.8 bits (52), Expect = 2.4
Identities = 9/104 (8%), Positives = 26/104 (25%), Gaps = 4/104 (3%)
Query: 5 TYALHHDPEIYPNPYVFDPERFRVPRCSYPHTHYIMILKSILIHTFLIQRDLPLRMRAIY 64
+ ++ + + + ++ + D +
Sbjct: 219 SNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYV 278
Query: 65 PTMLTYRSEKDHEIALMERFAPENADNIPNYAYLPFGEGPRNCI 108
+ + + E+F P+ +L FG G C+
Sbjct: 279 RVWIASANRDEEVFHDGEKFIPDR----NPNPHLSFGSGIHLCL 318
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin alpha prime subunit
[TaxId: 3847]}
Length = 203
Score = 23.7 bits (51), Expect = 6.0
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 17 NPYVFDPERFR 27
NP+ F+ +RF+
Sbjct: 1 NPFHFNSKRFQ 11
>d2j43a2 b.3.1.3 (A:112-223) Pullulanase PulA {Streptococcus
pyogenes [TaxId: 1314]}
Length = 112
Score = 22.9 bits (49), Expect = 7.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 11 DPEIYPNPYVFD 22
DP++Y NPY D
Sbjct: 101 DPKVYNNPYYID 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.145 0.472
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,582
Number of extensions: 19772
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 49
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.8 bits)