BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14271
         (65 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
 pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
          Length = 517

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 3   YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
           YKKNPKLL+QLQYCE+  I    +IG+ EL    +KLR+V +REE  + R+ L++ ++ +
Sbjct: 453 YKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 512


>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
 pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
          Length = 464

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query: 3   YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
           YKKNPKLL+QLQYCE+  I    +IG+ EL    +KLR+V +REE  + R+ L++ ++ +
Sbjct: 400 YKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 459


>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
 pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
          Length = 420

 Score = 33.5 bits (75), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 8   KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61
           K+  Q++  +     + IVIG  EL +N + ++N+ T E ETI  D L++  ++
Sbjct: 367 KIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
          Length = 645

 Score = 32.7 bits (73), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 38/60 (63%)

Query: 5   KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
           +N K+  +++  +  +I + IV+G  E+ +N V +R   ++++ET+ +D+ +  L ++++
Sbjct: 581 RNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640


>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
           Sp. Pcc 7120
 pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
           Sp. Pcc 7120
          Length = 465

 Score = 28.9 bits (63), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 8   KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
           +L  Q Q  +   I +C++IG  E A+    L+++ + E+  ++   L + ++ +L
Sbjct: 409 QLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464


>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
          Switch Protein Containing Two Gtpase Domains
          Length = 439

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 27 IGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
          +G+S L +  VK +  +  +EE ++RD + DT++
Sbjct: 12 VGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVE 45


>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
           Thermoplasma Acidophilum
 pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
           Thermoplasma Acidophilum
          Length = 434

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 12  QLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59
           QL+Y       + ++ G+ +L    V +RN  T  +E +  D +++ L
Sbjct: 374 QLKYASAIGADFAVIFGERDLERGVVTIRNXYTGSQENVGLDSVVEHL 421


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,644,092
Number of Sequences: 62578
Number of extensions: 46168
Number of successful extensions: 110
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 10
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)