BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14271
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R5E5|SYHM_PONAB Probable histidine--tRNA ligase, mitochondrial OS=Pongo abelii
GN=HARS2 PE=2 SV=1
Length = 506
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
M YK NPKLL QL YCE I ++IG+ EL +K+R+V +REE I R+ L+ +Q
Sbjct: 441 MLYKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENLVAEIQ 500
Query: 61 EKLKE 65
++L E
Sbjct: 501 KRLSE 505
>sp|P34183|SYH_CAEEL Histidine--tRNA ligase OS=Caenorhabditis elegans GN=hrs-1 PE=2 SV=3
Length = 521
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
M+ K NPKLL Q QY E+ +I IVIG+ EL VKLRNV+TR+E+TI D+L+ ++
Sbjct: 456 MALKANPKLLTQFQYAEERRIPLAIVIGEQELKDGVVKLRNVVTRDEQTIKLDQLITAVR 515
Query: 61 EKL 63
+ L
Sbjct: 516 DTL 518
>sp|A5D7V9|SYHM_BOVIN Probable histidine--tRNA ligase, mitochondrial OS=Bos taurus
GN=HARS2 PE=2 SV=1
Length = 506
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
+ YK NPKLL QL YCE+ I ++IG+ EL +KLR+V +REE I R+ L+ +Q
Sbjct: 441 LMYKNNPKLLPQLHYCENMGIPLVVIIGEQELKEGVIKLRSVASREEVAIKRENLVAEIQ 500
Query: 61 EKLKE 65
++L E
Sbjct: 501 KRLSE 505
>sp|Q99KK9|SYHM_MOUSE Probable histidine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Hars2 PE=2 SV=1
Length = 505
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
M YK NPKLL QL YCE I ++IG+ E +KLR+V +REE TI+R+ L+ +Q
Sbjct: 440 MLYKNNPKLLTQLHYCEKADIPLMVIIGEQERNEGVIKLRSVASREEVTINRESLVAEIQ 499
Query: 61 EKLKE 65
++L E
Sbjct: 500 KRLSE 504
>sp|P49590|SYHM_HUMAN Probable histidine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=HARS2 PE=1 SV=1
Length = 506
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
M YK NPKLL QL YCE I ++IG+ EL +K+R+V +REE I R+ + +Q
Sbjct: 441 MLYKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENFVAEIQ 500
Query: 61 EKLKE 65
++L E
Sbjct: 501 KRLSE 505
>sp|Q2KI84|SYHC_BOVIN Histidine--tRNA ligase, cytoplasmic OS=Bos taurus GN=HARS PE=2 SV=1
Length = 509
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
YKKNPKLL+QLQYCE+ I +IG+ EL +KLR+V +REE + R+ L++ ++ +
Sbjct: 442 YKKNPKLLNQLQYCEETGIPLVAIIGEQELKDGVIKLRSVASREEVDVRREDLVEEIKRR 501
>sp|Q61035|SYHC_MOUSE Histidine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Hars PE=2
SV=2
Length = 509
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
YKKNPKLL+QLQYCE+ I +IG+ EL +KLR+V +REE + R+ L++ ++ +
Sbjct: 442 YKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRREDLVEEIRRR 501
>sp|P12081|SYHC_HUMAN Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1
SV=2
Length = 509
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
YKKNPKLL+QLQYCE+ I +IG+ EL +KLR+V +REE + R+ L++ ++ +
Sbjct: 442 YKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 501
>sp|Q5R4R2|SYHC_PONAB Histidine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=HARS PE=2
SV=1
Length = 509
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
YKKNPKLL+QLQYCE+ I +IG+ EL +KLR+V +REE + R+ L++ ++ +
Sbjct: 442 YKKNPKLLNQLQYCEEAGIPLVAIIGEQELEDGVIKLRSVTSREEVDVRREDLVEEIKRR 501
>sp|P07178|SYHC_MESAU Histidine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=HARS
PE=2 SV=1
Length = 508
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
YKKNPKLL+QLQYCE+ I +IG+ EL +KLR+V +REE + R+ L++ ++ +
Sbjct: 441 YKKNPKLLNQLQYCEETGIPLVAIIGEQELKDGVIKLRSVASREEVDVRREDLVEEIRRR 500
>sp|P70076|SYHC_TAKRU Histidine--tRNA ligase, cytoplasmic OS=Takifugu rubripes GN=hars
PE=3 SV=1
Length = 519
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
+ YKK+PKLL QLQ+CE++ I ++G+ EL + VKLRNV TR+E ISR L+ ++
Sbjct: 455 LMYKKSPKLLSQLQHCEESGIPLVAILGEQELKNGVVKLRNVATRDEVDISRADLIAEIK 514
Query: 61 EK 62
++
Sbjct: 515 KR 516
>sp|P93422|SYH_ORYSJ Histidine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os05g0150900 PE=2 SV=2
Length = 788
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
+K ++ + L+Y + I W +++G+SE++S VKL+N+ +EE + R + L++K
Sbjct: 725 FKLTTRIQNHLKYATQSGIPWMVLVGESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQK 784
Query: 63 LK 64
L+
Sbjct: 785 LR 786
>sp|B6YS23|SYH_AZOPC Histidine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=hisS PE=3 SV=1
Length = 458
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
Y N K+ QL Y +NQI + ++G +E+A N + ++++ + + +I+ DKL++ Q
Sbjct: 395 YPHNTKIKKQLSYAHNNQIPFVAIVGSTEIAENKITIKDMRSCSQFSIALDKLINFFQ 452
>sp|Q86AS6|SYHC_DICDI Histidine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=hisS PE=3 SV=1
Length = 481
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
SYK NPKL QL +++ I I+IG+SE+ +NS+ ++ + R++ +I R ++
Sbjct: 414 FSYKVNPKLPAQLNTADESNIPLIIIIGKSEVETNSLSVKTMHDRKQVSIERSNFTVKIK 473
Query: 61 EKL 63
E L
Sbjct: 474 EIL 476
>sp|A9NGF8|SYH_ACHLI Histidine--tRNA ligase OS=Acholeplasma laidlawii (strain PG-8A)
GN=hisS PE=3 SV=1
Length = 420
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
P+L + L+Y D++ + I+IG++EL +N V+L+N T E+ +S D LLDTL+E L
Sbjct: 368 PQLKEALRY--DSK--FIIIIGENELNNNVVQLKNTKTEEQVEVSMDTLLDTLKELL 420
>sp|A6QD00|SYT_SULNB Threonine--tRNA ligase OS=Sulfurovum sp. (strain NBC37-1) GN=thrS
PE=3 SV=1
Length = 604
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
KN L +++ E ++ + ++IG E+ +N+V +RN TRE+ +++D+ + L ++L+
Sbjct: 541 KNDSLNKRIRTAEKQRVPYVVIIGDEEVQNNTVAIRNRRTREQYNLTQDEFMVELTKQLQ 600
Query: 65 E 65
E
Sbjct: 601 E 601
>sp|A7H1S0|SYT_CAMJD Threonine--tRNA ligase OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=thrS PE=3
SV=1
Length = 602
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
Y+KN L +++ E ++ +V+G E+A SV LR+ +E++ +S D+ + ++EK
Sbjct: 537 YEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVKEK 596
Query: 63 LKE 65
+ E
Sbjct: 597 MSE 599
>sp|B9KEB1|SYT_CAMLR Threonine--tRNA ligase OS=Campylobacter lari (strain RM2100 / D67 /
ATCC BAA-1060) GN=thrS PE=3 SV=1
Length = 603
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
Y KN L +++ E + +V+G E+A+ SV LR+ +E++T++ D+ + +EK
Sbjct: 538 YSKNESLNKKIRTAEKAHVPMILVLGDEEVANKSVALRDRRAKEQKTLTLDEFITLTKEK 597
Query: 63 LKE 65
L E
Sbjct: 598 LSE 600
>sp|Q5HWW3|SYT_CAMJR Threonine--tRNA ligase OS=Campylobacter jejuni (strain RM1221)
GN=thrS PE=3 SV=1
Length = 602
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
Y+KN L +++ E ++ +V+G E+A SV LR+ +E++ +S D+ + ++EK
Sbjct: 537 YEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVKEK 596
Query: 63 LKE 65
+ E
Sbjct: 597 MSE 599
>sp|Q9PIS3|SYT_CAMJE Threonine--tRNA ligase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=thrS PE=3 SV=1
Length = 602
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
Y+KN L +++ E ++ +V+G E+A SV LR+ +E++ +S D+ + ++EK
Sbjct: 537 YEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVKEK 596
Query: 63 LKE 65
+ E
Sbjct: 597 MSE 599
>sp|A8FK07|SYT_CAMJ8 Threonine--tRNA ligase OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=thrS PE=3
SV=1
Length = 602
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
Y+KN L +++ E ++ +V+G E+A SV LR+ +E++ +S D+ + ++EK
Sbjct: 537 YEKNESLSKKIRTAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVKEK 596
Query: 63 LKE 65
+ E
Sbjct: 597 MSE 599
>sp|A6LIF7|SYH_PARD8 Histidine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=hisS PE=3 SV=1
Length = 451
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 37/55 (67%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLD 57
Y ++ K+ Q+ Y + +I + ++G++E+A N + L+N+LT E+ ++ ++L++
Sbjct: 395 YPESTKMKKQMGYADAKKIPFVAIVGENEMAENKINLKNMLTGEQTLVTIEELIE 449
>sp|Q8SRR3|SYHC_ENCCU Probable histidine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0620 PE=3 SV=1
Length = 435
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59
Y + Q +Y +I + +V+G+SE+A+ SV++ N LTR++E + ++++ L
Sbjct: 373 YTRRSSFESQQKYVAKKKIPFIVVVGESEIAAGSVQVINALTRKKEIVKVEQMVSYL 429
>sp|B2FPL6|SYH_STRMK Histidine--tRNA ligase OS=Stenotrophomonas maltophilia (strain
K279a) GN=hisS PE=3 SV=1
Length = 464
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ Q QY I + ++ G+ ELA V ++++L ++ +SRD L TLQ +L++
Sbjct: 403 KIGKQFQYAAKAGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDGLASTLQVELEQ 460
>sp|A1VXT5|SYT_CAMJJ Threonine--tRNA ligase OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=thrS PE=3 SV=1
Length = 602
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
Y+KN L +++ E ++ +V+G E+ SV LR+ +E++ +S D+ + ++EK
Sbjct: 537 YEKNESLSKKIRIAEKQKLPMILVLGDDEVVKRSVALRDRRAKEQKNLSLDEFIKLVKEK 596
Query: 63 LKE 65
+ E
Sbjct: 597 MSE 599
>sp|A5F9R5|SYH_FLAJ1 Histidine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=hisS PE=3 SV=1
Length = 475
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59
Y N K+ Q QY + I + +++G E+ SNS L+N++T E+ ++ + L TL
Sbjct: 417 YPDNVKVGKQFQYADKRLIPFAVLVGDQEINSNSYALKNLVTGEQVSVDFEGLKKTL 473
>sp|A6KXA6|SYH_BACV8 Histidine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=hisS PE=3 SV=1
Length = 454
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
Y K+ Q+ Y D QI + ++G++E+ + L+N+ T E+ ++ D+LL ++
Sbjct: 396 YPDASKMKKQMGYANDKQIPFVAIVGENEMNEGKLTLKNMTTGEQSLVTPDELLAVVK 453
>sp|A5UHN3|SYP_HAEIG Proline--tRNA ligase OS=Haemophilus influenzae (strain PittGG)
GN=proS PE=3 SV=1
Length = 572
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+VIG+ L + ++ +N T E+E IS+DKLL L EKL
Sbjct: 531 VVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKL 569
>sp|Q4QMG5|SYP_HAEI8 Proline--tRNA ligase OS=Haemophilus influenzae (strain 86-028NP)
GN=proS PE=3 SV=1
Length = 572
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+VIG+ L + ++ +N T E+E IS+DKLL L EKL
Sbjct: 531 VVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKL 569
>sp|P43830|SYP_HAEIN Proline--tRNA ligase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=proS PE=1 SV=1
Length = 572
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+VIG+ L + ++ +N T E+E IS+DKLL L EKL
Sbjct: 531 VVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLSVLNEKL 569
>sp|B0SQQ4|SYH_LEPBP Histidine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=hisS PE=3 SV=1
Length = 437
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ QL Y E W ++ G+ E+ +N+V L+++ +R + T S + L ++E+L +
Sbjct: 380 KMGKQLSYAEKKGYRWILLRGEDEIKTNTVTLKDMASRNQFTFSFSEALQKIKEELSK 437
>sp|B0SH39|SYH_LEPBA Histidine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=hisS PE=3 SV=1
Length = 437
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ QL Y E W ++ G+ E+ +N+V L+++ +R + T S + L ++E+L +
Sbjct: 380 KMGKQLSYAEKKGYRWILLRGEDEIKTNTVTLKDMASRNQFTFSFSEALQKIKEELSK 437
>sp|Q980L3|SYH_SULSO Histidine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=hisS PE=3 SV=1
Length = 426
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 LQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
L Y I+IG+ EL N + +RN++TR++ +I + +LD +++ L
Sbjct: 376 LPYYASQGFKLAIIIGKQELEKNMITVRNLITRKQISIPLENVLDAIKQTL 426
>sp|A7GVZ2|SYT_CAMC5 Threonine--tRNA ligase OS=Campylobacter curvus (strain 525.92)
GN=thrS PE=3 SV=1
Length = 606
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
KN L +++ E ++ IV+G +E+A+ SV LR+ R + +S + L+ +EKL
Sbjct: 543 KNESLNKRIRTAEKQRVPMIIVLGDNEVANRSVALRDRQARTQSDMSLAEFLNLTKEKLS 602
Query: 65 E 65
E
Sbjct: 603 E 603
>sp|Q8PLH2|SYH_XANAC Histidine--tRNA ligase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=hisS PE=3 SV=1
Length = 478
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ Q QY I + ++ G ELA V +++++ ++ ++RD+L TLQ +L++
Sbjct: 408 KIGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 465
>sp|B4STN3|SYH_STRM5 Histidine--tRNA ligase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=hisS PE=3 SV=1
Length = 465
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ Q QY I + ++ G+ ELA V ++++L ++ +SRD+L TL +L++
Sbjct: 403 KIGKQFQYAAKAGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDELASTLLVELEQ 460
>sp|Q8P9P5|SYH_XANCP Histidine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=hisS PE=3
SV=1
Length = 477
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ Q QY I + ++ G ELA V +++++ ++ ++RD+L TLQ +L++
Sbjct: 408 KVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 465
>sp|Q3YRB1|SYH_EHRCJ Histidine--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=hisS
PE=3 SV=1
Length = 413
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
KN L + L+ DN I ++ G EL SN+V+++++ T E++ + + LLD L K+
Sbjct: 357 KNTGLKNMLRKINDNSI--VLIFGDEELKSNTVQVKDMKTGEQQEVEKGNLLDALYNKI 413
>sp|Q4UU37|SYH_XANC8 Histidine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=hisS PE=3 SV=1
Length = 477
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ Q QY I + ++ G ELA V +++++ ++ ++RD+L TLQ +L++
Sbjct: 408 KVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 465
>sp|A6LL06|SYH_THEM4 Histidine--tRNA ligase OS=Thermosipho melanesiensis (strain BI429 /
DSM 12029) GN=hisS PE=3 SV=1
Length = 419
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 QLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
QL++ C+++G++EL N V LRN+ T E+ I RD ++ T +E + E
Sbjct: 365 QLKHASRLNCRLCLIVGENELERNVVILRNMKTGEQIEIERDYIVGTTREWIDE 418
>sp|Q8F9Y3|SYH_LEPIN Histidine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=hisS
PE=3 SV=1
Length = 439
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 37/57 (64%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
K+ Q+Q E + + +G+SE+ + +V+++++++ E++++ R L DTL++ +
Sbjct: 382 KIGKQIQIAEKKGYRYVLFLGESEIRTETVQIKDLISGEQKSLPRKGLSDTLKKDFQ 438
>sp|A5UDZ4|SYP_HAEIE Proline--tRNA ligase OS=Haemophilus influenzae (strain PittEE)
GN=proS PE=3 SV=1
Length = 572
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+VIG+ L + ++ +N + E+E IS+DKLL L EKL
Sbjct: 531 VVIGEKNLDNGEIEYKNRRSGEKEMISKDKLLSVLNEKL 569
>sp|P62371|SYH_LEPIC Histidine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=hisS PE=3 SV=1
Length = 439
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 37/57 (64%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
K+ Q+Q E + + +G+SE+ + +V+++++++ E++++ R L DTL++ +
Sbjct: 382 KIGKQIQIAEKKGYRYVLFLGESEIRTETVQIKDLISGEQKSLPRKGLSDTLKKDFQ 438
>sp|Q3BUG0|SYH_XANC5 Histidine--tRNA ligase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=hisS PE=3 SV=1
Length = 482
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
K+ Q QY I + ++ G ELA V +++++ ++ ++RD+L TLQ +L++
Sbjct: 412 KVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 469
>sp|B7IHK5|SYH_THEAB Histidine--tRNA ligase OS=Thermosipho africanus (strain TCF52B)
GN=hisS PE=3 SV=1
Length = 418
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 12 QLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61
QL++ + C+++G++EL N V LRN+ T E+ I RD ++ T +E
Sbjct: 365 QLKHAARLKCKLCVIVGENELERNIVILRNMETGEQIEIERDYVVGTAKE 414
>sp|B9MPF7|SYH_CALBD Histidine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=hisS PE=3 SV=1
Length = 421
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 9 LLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
L Q++Y + + I+IG E+ K+RN+ T EE + + + + L+EKL++
Sbjct: 365 LKSQMKYADKIGCEFSIIIGDDEIEKGVCKVRNMKTSSEEIVEIENICEYLKEKLQK 421
>sp|B0S168|SYH_FINM2 Histidine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=hisS PE=3 SV=1
Length = 431
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
MSY ++ KL + Y + + + I+IGQ E+ N LRN+ +E + +++++ L+
Sbjct: 372 MSYLEDDKLKKKFNYADKLSVKYVIIIGQDEVEQNKFTLRNMENGNQELLELNEIIEKLK 431
>sp|A4SE02|SYH_PROVI Histidine--tRNA ligase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=hisS PE=3 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 23 WCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+ + IGQ+E S L+N+++ E+ T++ D + +TL+E L
Sbjct: 383 YALFIGQTEFESGQYGLKNLVSSEQSTLTLDSITETLREPL 423
>sp|Q8RAI8|SYH_THETN Histidine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=hisS PE=3
SV=1
Length = 417
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 12 QLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
Q++Y + +VIG+ EL S VKL+N+ T EE I L+D +++ +K
Sbjct: 368 QMKYANKLNAKFAVVIGEEELESKKVKLKNMATGEETEI----LIDEIEKAIK 416
>sp|A7I107|SYT_CAMHC Threonine--tRNA ligase OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=thrS PE=3
SV=1
Length = 609
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
KN L +++ E ++ +V+G +E+ + SV LR+ R + +S D+ L+ ++ KL
Sbjct: 546 KNETLNKRIRTAEKGRVPMILVLGDNEVKNRSVALRDRRARAQSNLSLDEFLEFVKNKLN 605
Query: 65 E 65
E
Sbjct: 606 E 606
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,212,026
Number of Sequences: 539616
Number of extensions: 610614
Number of successful extensions: 2243
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1996
Number of HSP's gapped (non-prelim): 261
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)