Query psy14271
Match_columns 65
No_of_seqs 145 out of 1045
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 15:36:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03129 HGTP_anticodon: Antic 99.7 2.2E-16 4.8E-21 83.2 5.4 57 5-61 37-93 (94)
2 cd00861 ProRS_anticodon_short 99.6 4.8E-15 1E-19 77.9 5.1 54 6-59 40-93 (94)
3 cd00858 GlyRS_anticodon GlyRS 99.5 5.2E-14 1.1E-18 77.6 7.6 57 7-63 64-120 (121)
4 COG0124 HisS Histidyl-tRNA syn 99.5 3.4E-14 7.3E-19 91.9 6.0 58 6-63 371-428 (429)
5 cd00860 ThrRS_anticodon ThrRS 99.5 1.6E-13 3.4E-18 71.5 6.2 54 6-59 37-90 (91)
6 PRK12305 thrS threonyl-tRNA sy 99.5 1.6E-13 3.6E-18 90.8 7.5 59 6-64 512-570 (575)
7 cd00738 HGTP_anticodon HGTP an 99.5 5.6E-13 1.2E-17 69.7 7.1 54 6-59 40-93 (94)
8 cd00862 ProRS_anticodon_zinc P 99.5 4.8E-13 1E-17 79.4 7.3 59 6-64 52-111 (202)
9 PRK14799 thrS threonyl-tRNA sy 99.4 1.1E-12 2.4E-17 87.0 7.5 59 5-63 473-531 (545)
10 TIGR00418 thrS threonyl-tRNA s 99.4 9.2E-13 2E-17 87.0 6.7 56 6-61 506-561 (563)
11 PRK00413 thrS threonyl-tRNA sy 99.4 1.1E-12 2.3E-17 87.7 7.0 59 6-64 575-633 (638)
12 PRK12444 threonyl-tRNA synthet 99.4 2.7E-12 5.9E-17 86.1 7.5 59 6-64 578-636 (639)
13 KOG1936|consensus 99.4 2.4E-12 5.3E-17 83.2 6.7 65 1-65 453-517 (518)
14 TIGR00408 proS_fam_I prolyl-tR 99.4 4.2E-12 9.2E-17 83.0 7.7 58 6-63 324-381 (472)
15 PRK14938 Ser-tRNA(Thr) hydrola 99.3 5.9E-12 1.3E-16 80.5 7.2 55 6-60 310-364 (387)
16 PLN02908 threonyl-tRNA synthet 99.3 7E-12 1.5E-16 84.8 7.8 60 5-64 624-683 (686)
17 PRK04173 glycyl-tRNA synthetas 99.3 7.8E-12 1.7E-16 81.5 7.6 57 6-62 399-455 (456)
18 PRK08661 prolyl-tRNA synthetas 99.3 8.6E-12 1.9E-16 81.6 7.6 59 6-64 330-388 (477)
19 PRK12325 prolyl-tRNA synthetas 99.3 1.2E-11 2.6E-16 80.2 7.5 56 5-60 383-438 (439)
20 PRK14894 glycyl-tRNA synthetas 99.3 1.5E-11 3.3E-16 81.0 7.0 60 5-64 472-538 (539)
21 PLN02837 threonine-tRNA ligase 99.3 2.4E-11 5.1E-16 81.5 7.8 59 6-64 551-609 (614)
22 CHL00201 syh histidine-tRNA sy 99.3 1.9E-11 4E-16 79.1 7.0 56 6-61 361-416 (430)
23 cd02426 Pol_gamma_b_Cterm C-te 99.3 4.6E-11 1E-15 66.7 7.7 57 7-63 70-126 (128)
24 PRK03991 threonyl-tRNA synthet 99.3 3E-11 6.4E-16 81.1 8.1 59 6-64 535-593 (613)
25 PRK09194 prolyl-tRNA synthetas 99.3 3.3E-11 7.1E-16 80.1 7.3 55 6-60 507-561 (565)
26 PLN02972 Histidyl-tRNA synthet 99.2 7.8E-11 1.7E-15 80.5 7.6 59 6-64 703-761 (763)
27 TIGR00389 glyS_dimeric glycyl- 99.2 9.6E-11 2.1E-15 77.9 7.6 56 7-62 495-550 (551)
28 PRK00037 hisS histidyl-tRNA sy 99.2 1.5E-10 3.1E-15 74.2 7.3 58 6-63 354-411 (412)
29 cd00859 HisRS_anticodon HisRS 99.1 4.1E-10 8.9E-15 57.8 5.7 54 6-59 37-90 (91)
30 PLN02530 histidine-tRNA ligase 99.1 3.8E-10 8.1E-15 74.1 5.5 50 6-55 437-486 (487)
31 PLN02734 glycyl-tRNA synthetas 99.0 4.7E-09 1E-13 71.3 8.1 55 6-64 608-662 (684)
32 PRK12420 histidyl-tRNA synthet 98.9 2.3E-09 4.9E-14 69.2 5.6 50 6-55 373-422 (423)
33 TIGR00409 proS_fam_II prolyl-t 98.8 1.9E-08 4.2E-13 67.3 7.5 55 6-60 512-566 (568)
34 COG0423 GRS1 Glycyl-tRNA synth 98.8 1.3E-08 2.8E-13 67.4 5.8 62 2-63 490-551 (558)
35 COG0441 ThrS Threonyl-tRNA syn 98.8 2.1E-08 4.6E-13 67.3 6.8 59 5-63 522-580 (589)
36 TIGR00442 hisS histidyl-tRNA s 98.5 3.4E-07 7.4E-12 58.6 4.8 40 6-45 358-397 (397)
37 PF12745 HGTP_anticodon2: Anti 98.1 2.7E-05 5.9E-10 48.4 7.1 62 3-64 40-107 (273)
38 KOG2298|consensus 97.7 5.4E-05 1.2E-09 50.4 4.2 59 5-63 534-592 (599)
39 KOG1637|consensus 97.6 0.0002 4.4E-09 47.6 5.8 57 6-62 495-554 (560)
40 KOG2324|consensus 97.5 0.00042 9.2E-09 45.0 5.8 54 6-59 372-426 (457)
41 KOG4163|consensus 97.4 0.00026 5.6E-09 46.8 3.6 61 4-64 389-449 (551)
42 COG0442 ProS Prolyl-tRNA synth 93.9 0.046 1E-06 36.9 2.1 52 7-59 447-498 (500)
43 COG0442 ProS Prolyl-tRNA synth 92.8 0.16 3.5E-06 34.4 3.3 57 6-62 329-388 (500)
44 cd02549 Peptidase_C39A A sub-f 70.6 15 0.00032 19.8 4.7 36 22-59 95-130 (141)
45 PRK03972 ribosomal biogenesis 68.3 23 0.00049 21.7 4.8 39 6-44 35-73 (208)
46 PF07338 DUF1471: Protein of u 66.1 13 0.00029 17.7 3.1 25 13-38 25-49 (56)
47 PF15649 Tox-REase-7: Restrict 64.7 14 0.00031 19.4 3.1 21 9-29 59-79 (87)
48 TIGR02861 SASP_H small acid-so 62.6 17 0.00037 17.7 3.5 26 31-56 31-57 (58)
49 PF06995 Phage_P2_GpU: Phage P 60.6 26 0.00056 19.0 4.2 34 10-44 62-95 (121)
50 PF08141 SspH: Small acid-solu 60.3 19 0.00042 17.5 3.5 26 31-56 31-57 (58)
51 PF08722 Tn7_Tnp_TnsA_N: TnsA 59.5 11 0.00025 19.1 2.2 19 8-26 68-86 (88)
52 PF01981 PTH2: Peptidyl-tRNA h 58.3 26 0.00056 18.9 3.6 34 8-41 62-97 (116)
53 cd02430 PTH2 Peptidyl-tRNA hyd 57.6 31 0.00066 18.9 3.8 35 8-42 61-97 (115)
54 TIGR00283 arch_pth2 peptidyl-t 57.6 26 0.00057 19.2 3.5 35 8-42 61-97 (115)
55 PRK03174 sspH acid-soluble spo 55.6 24 0.00053 17.2 3.4 27 31-57 31-58 (59)
56 PRK04322 peptidyl-tRNA hydrola 54.3 33 0.00071 18.8 3.5 35 8-42 59-95 (113)
57 KOG3430|consensus 53.4 20 0.00043 19.1 2.4 22 8-31 42-63 (90)
58 PF13899 Thioredoxin_7: Thiore 53.3 28 0.0006 17.2 3.2 24 7-30 4-27 (82)
59 COG2136 IMP4 Predicted exosome 52.4 50 0.0011 19.8 4.5 37 7-43 38-74 (191)
60 cd02407 PTH2_family Peptidyl-t 52.4 38 0.00083 18.5 3.8 35 8-42 61-97 (115)
61 PF04800 ETC_C1_NDUFA4: ETC co 52.1 27 0.00058 18.9 2.9 20 8-27 57-76 (101)
62 PF12242 Eno-Rase_NADH_b: NAD( 52.0 33 0.00072 17.8 3.1 23 8-30 22-48 (78)
63 PF12738 PTCB-BRCT: twin BRCT 50.3 20 0.00044 16.8 2.1 17 8-24 43-59 (63)
64 PRK01625 sspH acid-soluble spo 50.1 31 0.00068 16.9 3.6 26 31-56 31-57 (59)
65 cd00311 TIM Triosephosphate is 49.4 23 0.0005 21.9 2.7 27 6-32 103-129 (242)
66 cd08663 DAP_dppA_1 Peptidase M 49.3 44 0.00095 21.1 3.9 47 15-61 142-198 (266)
67 PF00571 CBS: CBS domain CBS d 49.1 17 0.00037 16.3 1.7 25 6-30 15-39 (57)
68 cd00281 DAP_dppA Peptidase M55 48.8 44 0.00096 21.1 3.9 47 15-61 141-197 (265)
69 cd08769 DAP_dppA_2 Peptidase M 47.9 46 0.001 21.0 3.9 47 15-61 142-198 (270)
70 KOG2506|consensus 47.1 23 0.00051 23.3 2.5 25 7-31 305-329 (371)
71 cd02259 Peptidase_C39_like Pep 46.7 42 0.00091 17.3 4.5 33 23-58 81-113 (122)
72 PF09837 DUF2064: Uncharacteri 46.4 17 0.00037 20.0 1.7 25 6-30 42-69 (122)
73 cd08770 DAP_dppA_3 Peptidase M 46.2 44 0.00096 21.1 3.6 48 15-62 142-198 (263)
74 KOG1432|consensus 46.1 23 0.0005 23.5 2.4 27 7-33 121-147 (379)
75 PRK09472 ftsA cell division pr 45.3 46 0.00099 22.0 3.7 49 13-61 251-299 (420)
76 COG3153 Predicted acetyltransf 43.9 40 0.00087 19.9 3.0 23 10-32 98-120 (171)
77 PTZ00333 triosephosphate isome 43.5 36 0.00078 21.2 2.9 26 6-31 108-133 (255)
78 KOG1643|consensus 43.4 30 0.00065 21.5 2.4 27 6-32 105-131 (247)
79 PF07685 GATase_3: CobB/CobQ-l 43.2 31 0.00066 19.6 2.4 27 6-32 28-54 (158)
80 cd02122 PA_GRAIL_like PA _GRAI 43.2 61 0.0013 18.2 3.6 25 7-31 71-95 (138)
81 PRK00042 tpiA triosephosphate 42.9 28 0.0006 21.7 2.3 27 6-32 105-131 (250)
82 PF06792 UPF0261: Uncharacteri 42.6 25 0.00055 23.6 2.2 25 10-34 260-284 (403)
83 COG0052 RpsB Ribosomal protein 42.3 44 0.00095 21.1 3.1 30 8-38 167-196 (252)
84 PF02225 PA: PA domain; Inter 42.1 47 0.001 16.7 2.9 22 7-28 44-65 (101)
85 PRK14565 triosephosphate isome 41.9 25 0.00054 21.8 2.0 27 6-32 104-130 (237)
86 TIGR01174 ftsA cell division p 40.9 81 0.0017 20.3 4.3 50 13-62 243-292 (371)
87 PF00121 TIM: Triosephosphate 40.9 16 0.00035 22.6 1.1 25 6-30 103-127 (244)
88 cd02132 PA_GO-like PA_GO-like: 40.5 67 0.0015 17.9 3.6 25 6-30 69-93 (139)
89 PF04951 Peptidase_M55: D-amin 40.1 54 0.0012 20.7 3.3 47 15-61 142-198 (265)
90 cd04813 PA_1 PA_1: Protease-as 40.0 64 0.0014 17.6 3.6 26 6-31 49-74 (117)
91 PRK14567 triosephosphate isome 39.8 32 0.0007 21.5 2.3 27 6-32 104-130 (253)
92 PF01221 Dynein_light: Dynein 39.7 45 0.00097 17.1 2.5 20 9-30 42-61 (89)
93 cd02129 PA_hSPPL_like PA_hSPPL 39.5 69 0.0015 17.7 3.6 26 6-31 54-79 (120)
94 cd04627 CBS_pair_14 The CBS do 39.4 49 0.0011 17.0 2.8 36 6-41 84-119 (123)
95 COG0149 TpiA Triosephosphate i 39.3 37 0.00079 21.3 2.5 25 7-31 108-132 (251)
96 PRK14864 putative biofilm stre 38.5 68 0.0015 17.4 3.2 18 14-31 71-88 (104)
97 cd04601 CBS_pair_IMPDH This cd 38.0 55 0.0012 16.2 3.0 36 6-41 71-106 (110)
98 cd04600 CBS_pair_HPP_assoc Thi 37.9 49 0.0011 16.9 2.6 34 6-39 85-118 (124)
99 cd04590 CBS_pair_CorC_HlyC_ass 37.7 48 0.001 16.5 2.5 25 6-30 72-96 (111)
100 PF13986 DUF4224: Domain of un 37.0 48 0.001 15.2 2.6 19 7-25 15-33 (47)
101 TIGR02742 TrbC_Ftype type-F co 36.8 31 0.00067 19.4 1.7 20 6-25 11-30 (130)
102 COG3720 HemS Putative heme deg 36.2 86 0.0019 20.5 3.8 31 6-40 230-260 (349)
103 cd00840 MPP_Mre11_N Mre11 nucl 36.2 52 0.0011 19.0 2.7 22 9-30 30-51 (223)
104 cd07400 MPP_YydB Bacillus subt 36.1 51 0.0011 17.8 2.6 20 11-30 26-45 (144)
105 PF14399 Transpep_BrtH: NlpC/p 35.9 1.1E+02 0.0023 19.0 4.6 38 20-58 112-149 (317)
106 cd04626 CBS_pair_13 The CBS do 35.8 60 0.0013 16.2 2.7 35 6-41 73-107 (111)
107 cd05017 SIS_PGI_PMI_1 The memb 35.8 45 0.00096 17.8 2.2 26 7-32 57-82 (119)
108 PRK13730 conjugal transfer pil 35.6 32 0.0007 21.1 1.8 20 6-25 102-121 (212)
109 cd02125 PA_VSR PA_VSR: Proteas 35.5 81 0.0018 17.4 3.6 24 7-30 53-76 (127)
110 PRK15492 triosephosphate isome 35.3 42 0.0009 21.1 2.3 27 6-32 113-139 (260)
111 cd02123 PA_C_RZF_like PA_C-RZF 34.9 90 0.002 17.7 3.6 26 6-31 77-102 (153)
112 PRK02399 hypothetical protein; 34.3 35 0.00076 23.0 1.9 22 11-32 262-283 (406)
113 cd02124 PA_PoS1_like PA_PoS1_l 33.9 88 0.0019 17.3 3.6 24 7-30 66-89 (129)
114 cd02877 GH18_hevamine_XipI_cla 33.4 56 0.0012 20.6 2.7 24 8-31 60-83 (280)
115 PF07997 DUF1694: Protein of u 33.0 46 0.001 18.4 2.0 21 9-29 77-97 (120)
116 cd05710 SIS_1 A subgroup of th 31.9 82 0.0018 16.8 2.9 25 7-31 61-85 (120)
117 PTZ00059 dynein light chain; P 31.6 64 0.0014 16.8 2.3 20 9-30 43-62 (90)
118 PLN02429 triosephosphate isome 31.6 42 0.00091 21.8 1.9 26 6-31 166-191 (315)
119 smart00116 CBS Domain in cysta 31.2 29 0.00064 13.9 0.9 25 6-30 8-32 (49)
120 COG4536 CorB Putative Mg2+ and 31.1 76 0.0017 21.5 3.0 40 1-40 278-317 (423)
121 cd05014 SIS_Kpsf KpsF-like pro 31.0 84 0.0018 16.5 2.9 24 7-30 61-84 (128)
122 cd04587 CBS_pair_CAP-ED_DUF294 30.8 43 0.00094 16.7 1.6 35 6-40 74-108 (113)
123 PF14153 Spore_coat_CotO: Spor 30.7 66 0.0014 19.3 2.5 26 32-57 154-179 (185)
124 cd04801 CBS_pair_M50_like This 30.4 81 0.0018 15.8 3.6 37 6-42 75-111 (114)
125 PLN03058 dynein light chain ty 30.4 76 0.0016 17.9 2.6 21 9-31 75-95 (128)
126 PF09673 TrbC_Ftype: Type-F co 30.3 46 0.001 18.0 1.7 20 6-25 10-29 (113)
127 PRK14566 triosephosphate isome 30.1 64 0.0014 20.3 2.5 25 7-31 115-139 (260)
128 PRK14556 pyrH uridylate kinase 29.8 82 0.0018 19.7 2.9 28 8-35 42-69 (249)
129 cd02421 Peptidase_C39_likeD A 29.6 92 0.002 16.2 4.6 35 22-59 80-115 (124)
130 COG2179 Predicted hydrolase of 29.6 55 0.0012 19.5 2.0 31 2-32 88-121 (175)
131 cd02429 PTH2_like Peptidyl-tRN 29.6 1.1E+02 0.0023 16.9 3.6 32 8-42 67-98 (116)
132 cd04583 CBS_pair_ABC_OpuCA_ass 29.4 73 0.0016 15.7 2.4 25 6-30 70-94 (109)
133 cd04612 CBS_pair_SpoIVFB_EriC_ 29.4 82 0.0018 15.6 2.6 34 6-39 72-105 (111)
134 PLN02561 triosephosphate isome 29.4 70 0.0015 20.0 2.6 25 6-30 107-131 (253)
135 cd04588 CBS_pair_CAP-ED_DUF294 29.4 82 0.0018 15.6 3.0 35 6-40 71-105 (110)
136 cd04585 CBS_pair_ACT_assoc2 Th 29.3 57 0.0012 16.4 2.0 24 6-29 83-106 (122)
137 cd04605 CBS_pair_MET2_assoc Th 29.1 77 0.0017 15.7 2.4 34 6-39 71-104 (110)
138 PTZ00222 60S ribosomal protein 28.9 1.5E+02 0.0033 18.9 4.0 46 12-59 167-219 (263)
139 KOG4230|consensus 28.7 62 0.0013 23.5 2.4 23 7-29 737-759 (935)
140 cd02871 GH18_chitinase_D-like 28.6 88 0.0019 19.8 3.0 25 7-31 60-84 (312)
141 PF03412 Peptidase_C39: Peptid 28.2 1E+02 0.0022 16.3 4.1 33 22-58 86-118 (131)
142 PRK11573 hypothetical protein; 28.1 55 0.0012 21.7 2.1 39 4-42 268-306 (413)
143 cd02418 Peptidase_C39B A sub-f 28.1 1E+02 0.0022 16.2 4.4 24 34-58 100-123 (136)
144 PF01380 SIS: SIS domain SIS d 27.8 1E+02 0.0022 16.1 3.2 24 7-30 67-90 (131)
145 PLN02251 pyrophosphate-depende 27.7 94 0.002 21.9 3.1 24 8-31 178-201 (568)
146 cd04602 CBS_pair_IMPDH_2 This 27.2 73 0.0016 16.1 2.1 25 6-30 75-99 (114)
147 cd04800 CBS_pair_CAP-ED_DUF294 27.1 67 0.0014 16.0 2.0 24 6-29 73-96 (111)
148 PF04427 Brix: Brix domain; I 27.0 1.3E+02 0.0029 17.2 4.0 42 8-49 36-77 (191)
149 cd02205 CBS_pair The CBS domai 27.0 87 0.0019 15.1 2.4 33 6-38 74-106 (113)
150 PTZ00365 60S ribosomal protein 27.0 54 0.0012 20.9 1.8 19 14-32 169-187 (266)
151 PF07611 DUF1574: Protein of u 26.6 88 0.0019 20.6 2.7 19 9-27 254-272 (345)
152 cd08166 MPP_Cdc1_like_1 unchar 26.4 1E+02 0.0022 18.5 2.9 23 8-30 29-52 (195)
153 cd05013 SIS_RpiR RpiR-like pro 25.9 85 0.0018 16.4 2.3 24 8-31 75-98 (139)
154 cd04631 CBS_pair_18 The CBS do 25.9 95 0.0021 15.8 2.5 24 6-29 86-109 (125)
155 PF01976 DUF116: Protein of un 25.7 86 0.0019 18.1 2.4 26 7-32 73-98 (158)
156 COG0849 ftsA Cell division ATP 25.3 68 0.0015 21.6 2.1 51 11-61 248-298 (418)
157 cd04816 PA_SaNapH_like PA_SaNa 25.2 1.2E+02 0.0027 16.2 3.3 25 7-31 54-78 (122)
158 PF06613 KorB_C: KorB C-termin 24.9 1E+02 0.0022 15.2 2.3 31 25-55 22-52 (60)
159 PRK10886 DnaA initiator-associ 24.7 1E+02 0.0023 18.3 2.7 25 6-30 122-146 (196)
160 COG2875 CobM Precorrin-4 methy 24.7 1E+02 0.0022 19.5 2.6 25 8-32 91-115 (254)
161 PHA02546 47 endonuclease subun 24.6 1E+02 0.0022 19.8 2.7 12 20-31 76-87 (340)
162 COG0193 Pth Peptidyl-tRNA hydr 24.5 96 0.0021 18.7 2.5 38 5-42 70-107 (190)
163 TIGR00715 precor6x_red precorr 24.5 1.9E+02 0.004 18.1 5.3 45 8-63 211-255 (256)
164 cd02130 PA_ScAPY_like PA_ScAPY 24.4 1.3E+02 0.0028 16.1 3.4 24 7-30 55-78 (122)
165 PF03646 FlaG: FlaG protein; 24.3 1.2E+02 0.0026 15.9 6.4 43 17-60 51-94 (107)
166 cd04606 CBS_pair_Mg_transporte 24.2 1.1E+02 0.0023 15.2 2.9 25 6-30 69-93 (109)
167 cd04637 CBS_pair_24 The CBS do 24.1 96 0.0021 15.7 2.3 24 6-29 83-106 (122)
168 cd00363 PFK Phosphofructokinas 24.0 86 0.0019 20.3 2.4 25 8-32 80-104 (338)
169 TIGR02483 PFK_mixed phosphofru 24.0 1.3E+02 0.0028 19.5 3.1 25 8-32 82-106 (324)
170 TIGR02477 PFKA_PPi diphosphate 24.0 1.2E+02 0.0026 21.2 3.1 25 8-32 149-173 (539)
171 PRK03202 6-phosphofructokinase 23.9 1.2E+02 0.0026 19.6 2.9 25 8-32 81-105 (320)
172 PF08025 Antimicrobial_3: Spid 23.7 16 0.00035 15.8 -0.7 14 6-19 20-33 (37)
173 cd00763 Bacterial_PFK Phosphof 23.7 99 0.0021 19.9 2.6 25 8-32 80-104 (317)
174 COG0615 TagD Cytidylyltransfer 23.5 1.1E+02 0.0024 17.6 2.5 20 10-30 18-37 (140)
175 PRK05654 acetyl-CoA carboxylas 23.5 88 0.0019 20.0 2.3 21 7-27 143-163 (292)
176 cd02417 Peptidase_C39_likeA A 23.5 1.2E+02 0.0027 15.6 4.1 25 34-58 89-113 (121)
177 PRK10259 hypothetical protein; 23.2 1E+02 0.0023 16.1 2.2 23 9-31 51-74 (86)
178 cd07399 MPP_YvnB Bacillus subt 23.1 1.2E+02 0.0025 18.0 2.7 18 13-30 28-45 (214)
179 PRK12311 rpsB 30S ribosomal pr 23.1 1.1E+02 0.0023 20.0 2.6 22 10-32 165-186 (326)
180 cd04619 CBS_pair_6 The CBS dom 22.8 1.2E+02 0.0026 15.3 2.7 37 6-42 9-45 (114)
181 PF13051 DUF3912: Protein of u 22.8 1.1E+02 0.0025 15.0 2.5 22 17-41 28-49 (68)
182 COG3044 Predicted ATPase of th 22.7 96 0.0021 21.5 2.4 51 7-59 325-376 (554)
183 cd07396 MPP_Nbla03831 Homo sap 22.7 1.1E+02 0.0024 18.7 2.6 21 9-29 29-49 (267)
184 TIGR00515 accD acetyl-CoA carb 22.7 93 0.002 19.8 2.3 22 7-28 142-163 (285)
185 PRK11263 cardiolipin synthase 22.6 1.3E+02 0.0028 20.1 3.0 28 1-29 228-255 (411)
186 PRK01060 endonuclease IV; Prov 22.6 1.2E+02 0.0026 18.4 2.7 22 8-29 90-111 (281)
187 PRK09428 pssA phosphatidylseri 22.6 1.2E+02 0.0026 20.6 2.9 30 1-31 273-302 (451)
188 cd04624 CBS_pair_11 The CBS do 22.6 1.1E+02 0.0025 15.1 2.4 24 7-30 74-97 (112)
189 cd07391 MPP_PF1019 Pyrococcus 22.6 1.5E+02 0.0032 16.8 3.0 23 9-31 30-52 (172)
190 cd02126 PA_EDEM3_like PA_EDEM3 22.5 1.5E+02 0.0032 16.2 3.6 24 7-30 51-74 (126)
191 cd00765 Pyrophosphate_PFK Phos 22.5 1.3E+02 0.0029 21.1 3.1 24 8-31 154-177 (550)
192 PLN03028 pyrophosphate--fructo 22.5 1.3E+02 0.0028 21.5 3.1 25 8-32 161-185 (610)
193 PF08840 BAAT_C: BAAT / Acyl-C 22.4 70 0.0015 19.0 1.6 17 16-32 111-127 (213)
194 cd04607 CBS_pair_NTP_transfera 22.3 1.2E+02 0.0026 15.1 3.1 36 6-41 74-109 (113)
195 TIGR00186 rRNA_methyl_3 rRNA m 22.2 2E+02 0.0043 17.5 6.6 35 6-40 101-135 (237)
196 TIGR00441 gmhA phosphoheptose 22.2 1.3E+02 0.0028 16.8 2.7 24 7-30 93-116 (154)
197 PRK07085 diphosphate--fructose 22.2 1.3E+02 0.0029 21.1 3.1 25 8-32 152-176 (555)
198 cd04599 CBS_pair_GGDEF_assoc2 22.2 1.2E+02 0.0025 14.8 2.6 24 6-29 67-90 (105)
199 PF00149 Metallophos: Calcineu 22.1 1.3E+02 0.0028 15.4 3.2 18 12-29 23-40 (200)
200 PF02736 Myosin_N: Myosin N-te 21.9 93 0.002 13.7 2.2 22 31-53 20-41 (42)
201 cd04820 PA_M28_1_1 PA_M28_1_1: 21.9 1.7E+02 0.0036 16.6 3.4 26 8-33 73-98 (137)
202 cd04611 CBS_pair_PAS_GGDEF_DUF 21.8 1.2E+02 0.0026 14.9 2.7 24 6-29 72-95 (111)
203 cd07035 TPP_PYR_POX_like Pyrim 21.8 1.2E+02 0.0025 16.7 2.4 24 10-33 75-98 (155)
204 PF09035 Tn916-Xis: Excisionas 21.7 1.1E+02 0.0025 15.2 2.1 24 7-30 25-49 (67)
205 cd02419 Peptidase_C39C A sub-f 21.7 1.4E+02 0.003 15.6 4.2 26 33-59 93-118 (127)
206 PRK12342 hypothetical protein; 21.7 1.9E+02 0.0042 18.1 3.5 31 15-45 131-162 (254)
207 smart00481 POLIIIAc DNA polyme 21.6 1.1E+02 0.0024 14.4 3.2 22 6-27 14-35 (67)
208 PRK13695 putative NTPase; Prov 21.6 1.4E+02 0.0031 16.7 2.8 54 9-62 115-171 (174)
209 cd04640 CBS_pair_27 The CBS do 21.6 99 0.0021 16.0 2.0 25 6-30 86-110 (126)
210 cd04597 CBS_pair_DRTGG_assoc2 21.6 1.3E+02 0.0028 15.5 2.5 36 6-41 74-109 (113)
211 COG1920 Predicted nucleotidylt 21.5 1.5E+02 0.0033 18.2 2.9 23 3-26 140-162 (210)
212 PF13588 HSDR_N_2: Type I rest 21.4 1.4E+02 0.0031 15.5 4.9 25 7-31 68-92 (112)
213 cd07402 MPP_GpdQ Enterobacter 21.0 1.4E+02 0.0029 17.6 2.7 21 9-29 27-49 (240)
214 CHL00174 accD acetyl-CoA carbo 21.0 86 0.0019 20.2 1.9 22 7-28 155-176 (296)
215 cd04642 CBS_pair_29 The CBS do 20.9 89 0.0019 16.1 1.7 24 6-29 87-110 (126)
216 PRK00414 gmhA phosphoheptose i 20.9 1.5E+02 0.0032 17.4 2.8 24 7-30 125-148 (192)
217 PTZ00372 endonuclease 4-like p 20.9 1.3E+02 0.0028 20.3 2.7 19 8-26 219-237 (413)
218 cd05005 SIS_PHI Hexulose-6-pho 20.7 1.5E+02 0.0033 16.8 2.8 24 7-30 89-112 (179)
219 COG1099 Predicted metal-depend 20.7 1.3E+02 0.0027 19.1 2.5 21 9-29 116-136 (254)
220 PF09778 Guanylate_cyc_2: Guan 20.7 2.2E+02 0.0048 17.5 4.0 37 19-56 159-196 (212)
221 PRK13209 L-xylulose 5-phosphat 20.6 1.3E+02 0.0029 18.3 2.6 20 9-28 101-120 (283)
222 PRK14905 triosephosphate isome 20.6 89 0.0019 20.6 1.9 26 7-32 115-140 (355)
223 KOG2507|consensus 20.4 1.1E+02 0.0024 21.1 2.3 30 2-32 2-31 (506)
224 cd00462 PTH Peptidyl-tRNA hydr 20.3 1.6E+02 0.0036 17.2 2.9 38 6-43 67-104 (171)
225 cd02127 PA_hPAP21_like PA_hPAP 20.1 1.7E+02 0.0036 15.9 5.1 25 6-30 44-68 (118)
No 1
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.66 E-value=2.2e-16 Score=83.25 Aligned_cols=57 Identities=32% Similarity=0.542 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHH
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~ 61 (65)
.+.++++||++|++.|+||++++|++|.++|++++|++.++++..++++++.+.++.
T Consensus 37 ~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 37 SDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQETVSLEELIEYLKE 93 (94)
T ss_dssp SSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEEEEHHHHHHHHhh
Confidence 478999999999999999999999999999999999999999999999999998864
No 2
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.58 E-value=4.8e-15 Score=77.90 Aligned_cols=54 Identities=30% Similarity=0.321 Sum_probs=51.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
..++++++++|++.|+||++++|++|..++++++|++.++++..++++++.+.+
T Consensus 40 ~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~~~~~~~~l 93 (94)
T cd00861 40 NERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEISIDELLEFL 93 (94)
T ss_pred CCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEeHHHHHHhh
Confidence 679999999999999999999999999999999999999999999999987654
No 3
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.55 E-value=5.2e-14 Score=77.57 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=53.3
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.++++|+++|++.|+||++|+|++|..++++++|++.++++..++++++.+.+...+
T Consensus 64 ~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 64 GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999988876543
No 4
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.4e-14 Score=91.89 Aligned_cols=58 Identities=29% Similarity=0.567 Sum_probs=54.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.+++++||++|++.|++|+||+|++|.++|+|+||||.+++|..++++++.+.+...+
T Consensus 371 ~r~~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 371 GRKLKKQFKYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred cccHHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 6779999999999999999999999999999999999999999999999999886543
No 5
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.49 E-value=1.6e-13 Score=71.47 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=50.5
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
..++++|+++|++.|+|+++++|++|..+++++++++.++++..++++++...+
T Consensus 37 ~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~~~~~~~~~~~ 90 (91)
T cd00860 37 NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGSMSLDEFIEKL 90 (91)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccceEcHHHHHHHh
Confidence 689999999999999999999999999999999999999999999998887654
No 6
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.48 E-value=1.6e-13 Score=90.79 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=55.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+.++++||++|++.|+||+||||++|+++|+|+||++.++++..++++++++.+...++
T Consensus 512 ~~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~ 570 (575)
T PRK12305 512 NERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIA 570 (575)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999999999998877664
No 7
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.46 E-value=5.6e-13 Score=69.65 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=50.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
..++++++++|++.|+||++++|++|+.+++++++++.++++..++++++...+
T Consensus 40 ~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~~~~~~~~~~~~~i 93 (94)
T cd00738 40 ERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGESETLHVDELPEFL 93 (94)
T ss_pred CcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCceeEEEHHHHHhhc
Confidence 589999999999999999999999999999999999999999999999887643
No 8
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.45 E-value=4.8e-13 Score=79.40 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=53.9
Q ss_pred CC-CHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NP-KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~-~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+. +++++|++|++.|+|+.|+||++|+++|+|+++++.++++..++++++...+...+.
T Consensus 52 ~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~ 111 (202)
T cd00862 52 DNYTPGWKFNDWELKGVPLRIEIGPRDLEKNTVVIVRRDTGEKKTVPLAELVEKVPELLD 111 (202)
T ss_pred CCCCHhHHHHHHHhCCCCEEEEECcchhhCCEEEEEEecCCcceEEEHHHHHHHHHHHHH
Confidence 45 999999999999999999999999999999999999999999999999887765543
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.41 E-value=1.1e-12 Score=86.96 Aligned_cols=59 Identities=17% Similarity=0.339 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.++++++|+++|++.|+||++|||++|+++++|++|++.++++..++++++++.+...+
T Consensus 473 ~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i 531 (545)
T PRK14799 473 AGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEI 531 (545)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999998876554
No 10
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.40 E-value=9.2e-13 Score=87.05 Aligned_cols=56 Identities=25% Similarity=0.461 Sum_probs=53.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~ 61 (65)
++++++|+++|++.|+||+||+|++|.++|+|+||++.+++|..++++++++.++.
T Consensus 506 ~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 506 NERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999999999887754
No 11
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.40 E-value=1.1e-12 Score=87.67 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=55.5
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
++++++|+++|++.|+||++|||++|.++|+|++|++.+++|..++++++++.+...+.
T Consensus 575 ~~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~ 633 (638)
T PRK00413 575 NEKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIA 633 (638)
T ss_pred CCCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999998876654
No 12
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.37 E-value=2.7e-12 Score=86.06 Aligned_cols=59 Identities=24% Similarity=0.450 Sum_probs=55.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+.++++|+++|++.|+||+++||++|.++|+|++|++.+++|..++++++.+.+...++
T Consensus 578 ~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 578 DEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999988876654
No 13
>KOG1936|consensus
Probab=99.37 E-value=2.4e-12 Score=83.22 Aligned_cols=65 Identities=43% Similarity=0.711 Sum_probs=61.0
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhhC
Q psy14271 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65 (65)
Q Consensus 1 ~~~~~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~~ 65 (65)
|.|..+.++-+||++|++.++|++||+|++|.+.|.|++|++.+++...++.++++..++..+++
T Consensus 453 ~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~~ 517 (518)
T KOG1936|consen 453 YLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLSQ 517 (518)
T ss_pred hhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhcC
Confidence 46777889999999999999999999999999999999999999999999999999999888765
No 14
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.36 E-value=4.2e-12 Score=82.96 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
+.+++++|++|++.|+|++|+||++|.++|+|+++++.++++..++++++.+.+...+
T Consensus 324 ~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l 381 (472)
T TIGR00408 324 DNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELL 381 (472)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999988776544
No 15
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.34 E-value=5.9e-12 Score=80.49 Aligned_cols=55 Identities=15% Similarity=0.398 Sum_probs=52.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~ 60 (65)
.+++++|+++|++.|+||++++|++|+++|++++|++.+++|..++++++...++
T Consensus 310 srSLgKQiK~AdK~GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lk 364 (387)
T PRK14938 310 DDSLGNKIRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIK 364 (387)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999987765
No 16
>PLN02908 threonyl-tRNA synthetase
Probab=99.33 E-value=7e-12 Score=84.80 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
.++++++|+++|++.|+||++|||++|.++|+|+||++.++++..++++++++.+.....
T Consensus 624 ~~~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~ 683 (686)
T PLN02908 624 TDRKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERA 683 (686)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999999999999988876543
No 17
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.33 E-value=7.8e-12 Score=81.51 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=53.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~ 62 (65)
..++++++++|++.|+||+++||++|+++++|++|++.++++..++++++.+.+...
T Consensus 399 ~~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 399 SGSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 468999999999999999999999999999999999999999999999998887643
No 18
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.33 E-value=8.6e-12 Score=81.60 Aligned_cols=59 Identities=27% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+.+++++|++|++.|+|++|+||++|+++|+|+++++.++++..++++++...+...+.
T Consensus 330 ~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~ 388 (477)
T PRK08661 330 DKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLE 388 (477)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999887765543
No 19
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.31 E-value=1.2e-11 Score=80.21 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHH
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~ 60 (65)
.+.++++||++|+..|+||+||||++|.++|+|+++++.++++..++++++++.+.
T Consensus 383 ~~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 383 TDERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred CCCCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999999999987653
No 20
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.28 E-value=1.5e-11 Score=80.97 Aligned_cols=60 Identities=15% Similarity=0.286 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEE-------cccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVI-------GQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~viv-------G~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
.+.+++++++.|+..|+||+|+| |++|.++++|+||++++.+|..++++++++.|...+|
T Consensus 472 dsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 472 DTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred CCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 35799999999999999999999 9999999999999999999999999999999988776
No 21
>PLN02837 threonine-tRNA ligase
Probab=99.28 E-value=2.4e-11 Score=81.51 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=54.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+.++++++++|++.|+||+++||++|.++|+|+++++.++++..++++++.+.+...++
T Consensus 551 ~~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~ 609 (614)
T PLN02837 551 GERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVE 609 (614)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999888876543
No 22
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.28 E-value=1.9e-11 Score=79.10 Aligned_cols=56 Identities=13% Similarity=0.327 Sum_probs=52.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~ 61 (65)
..++++++++|.+.|+++++|+|++|.++++|++|++.+++|..++++++++.+..
T Consensus 361 ~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~ 416 (430)
T CHL00201 361 SSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISY 416 (430)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999888754
No 23
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.27 E-value=4.6e-11 Score=66.71 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=53.5
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.+++++|+.++..|+||.++||++.+++|+|+++++.++++..++++++...+...+
T Consensus 70 ~~~G~k~~~~dliGiP~~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~ 126 (128)
T cd02426 70 SSLEQLLDKYDEMGVLFTLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYI 126 (128)
T ss_pred cCHHHHHHhhhhcCCCEEEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999887654
No 24
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.27 E-value=3e-11 Score=81.12 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=55.1
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+.+++++|++|++.|+||+++||++|+++|+|++|++.++++..++++++...+...+.
T Consensus 535 ~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 535 DESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999988876553
No 25
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.25 E-value=3.3e-11 Score=80.12 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~ 60 (65)
+.++++||++|+..|+||+|+||++|.++|+|+++++.++++..++++++.+.+.
T Consensus 507 ~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 507 KERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999988765
No 26
>PLN02972 Histidyl-tRNA synthetase
Probab=99.21 E-value=7.8e-11 Score=80.47 Aligned_cols=59 Identities=25% Similarity=0.502 Sum_probs=56.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
.+++++|+++|++.|++|++|+|++|..+|+|+|||+.+++|..+++++++..++..|+
T Consensus 703 ~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 703 STRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999988775
No 27
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.20 E-value=9.6e-11 Score=77.88 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHH
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~ 62 (65)
.++++++++|++.|+||+|+||++|.++++|++|++.+++|..++++++.+.+...
T Consensus 495 ~sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 495 GTIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 35999999999999999999999999999999999999999999999998877643
No 28
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.17 E-value=1.5e-10 Score=74.15 Aligned_cols=58 Identities=29% Similarity=0.601 Sum_probs=54.5
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
+.++++++++|.+.|+|+++++|++|.++|+|++|++.++++..+++++++..|+..+
T Consensus 354 ~~~~~~~~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 354 GRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999987655
No 29
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.10 E-value=4.1e-10 Score=57.83 Aligned_cols=54 Identities=30% Similarity=0.596 Sum_probs=49.1
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
..++++++++|.+.|+|+++++|+.+..++++.++++.++++..++++++.+.+
T Consensus 37 ~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (91)
T cd00859 37 GRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETVALDELVEEL 90 (91)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEEeHHHHHHHh
Confidence 468999999999999999999999999999999999999988899998887654
No 30
>PLN02530 histidine-tRNA ligase
Probab=99.06 E-value=3.8e-10 Score=74.08 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=47.1
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKL 55 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~ 55 (65)
+.++++++++|++.|++|++++|++|.++++|++|++.++++..++++++
T Consensus 437 ~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 437 PKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 57899999999999999999999999999999999999999999988764
No 31
>PLN02734 glycyl-tRNA synthetase
Probab=98.97 E-value=4.7e-09 Score=71.27 Aligned_cols=55 Identities=5% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
+.++++++++|+..|+||+|+||. +|+|++|++.+++|..++++++...+...++
T Consensus 608 ~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 608 GTSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred CCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCCCceEEeeHHHHHHHHHHHHc
Confidence 569999999999999999999996 7999999999999999999999988876543
No 32
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.94 E-value=2.3e-09 Score=69.23 Aligned_cols=50 Identities=28% Similarity=0.514 Sum_probs=47.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKL 55 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~ 55 (65)
..++++++++|.+.|++|++++|++|.++++|+||++.++++..++++++
T Consensus 373 ~~~l~~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 373 GRKLKKALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred CcCHHHHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 57899999999999999999999999999999999999999999998775
No 33
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.84 E-value=1.9e-08 Score=67.29 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=51.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~ 60 (65)
+.+++++|+.|+..|+||.|+||.+++++|+|+++++.++++..++++++...+.
T Consensus 512 ~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~ 566 (568)
T TIGR00409 512 NERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLE 566 (568)
T ss_pred CCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999988764
No 34
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.3e-08 Score=67.43 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=57.1
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 2 SYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 2 ~~~~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.|....+++++.++++..|.||+|.|.-+-.++++||||++++-.|..++++++...+...+
T Consensus 490 ~yDdsGsIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~ 551 (558)
T COG0423 490 DYDDSGSIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELI 551 (558)
T ss_pred EecCCCcHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHh
Confidence 35566799999999999999999999999999999999999999999999999999987654
No 35
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.1e-08 Score=67.32 Aligned_cols=59 Identities=20% Similarity=0.469 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.+.+++++++.|...++||+++||++|++++++++|.+.+.++..+++++++..++..+
T Consensus 522 ~~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~ 580 (589)
T COG0441 522 RNEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEI 580 (589)
T ss_pred cccchHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999998888899999999887654
No 36
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.46 E-value=3.4e-07 Score=58.57 Aligned_cols=40 Identities=30% Similarity=0.569 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCC
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTR 45 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~ 45 (65)
..++++++++|.+.|++++++||++|.++++|+|||+.++
T Consensus 358 ~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 358 GRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEeCCCC
Confidence 5789999999999999999999999999999999999764
No 37
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=98.09 E-value=2.7e-05 Score=48.40 Aligned_cols=62 Identities=27% Similarity=0.634 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEEcccc------cccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSE------LASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 3 ~~~~~~l~kq~k~A~~~~~~~~vivG~~E------~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
|....++...+.+|...|++|+|||-+.+ -..+.+.||++.++.+..++.+||+.+|...+.
T Consensus 40 ~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK~l~~~~e~dv~~~eLv~~l~~ei~ 107 (273)
T PF12745_consen 40 YDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVKSLEKKKETDVDRDELVDWLQQEIR 107 (273)
T ss_pred cccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEeccCCCcccccCHHHHHHHHHHHHH
Confidence 44345899999999999999999997765 233459999999999999999999999987664
No 38
>KOG2298|consensus
Probab=97.74 E-value=5.4e-05 Score=50.40 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
++.++++++.+.+..|+||.|.|..+-.++++|++|++++-.|..+.++++...+...+
T Consensus 534 s~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s~v~~~~ 592 (599)
T KOG2298|consen 534 SSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKSFLIKYI 592 (599)
T ss_pred CCCcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999998876544
No 39
>KOG1637|consensus
Probab=97.65 E-value=0.0002 Score=47.63 Aligned_cols=57 Identities=18% Similarity=0.368 Sum_probs=48.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCC---CceeeecHHHHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLT---REEETISRDKLLDTLQEK 62 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~---~~~~~~~~~e~~~~i~~~ 62 (65)
...++++++.|.-.+..|+++||++|.+.+++.|+.+++ ..+..++++++.+.+...
T Consensus 495 ~~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l 554 (560)
T KOG1637|consen 495 DSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKEL 554 (560)
T ss_pred cchHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHh
Confidence 478999999999999999999999999999999998743 345578888888876543
No 40
>KOG2324|consensus
Probab=97.51 E-value=0.00042 Score=45.03 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEc-ccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIG-QSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG-~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
...++++++.|++.|+||+|||| ..-..+..+.|+-...++...+..+.+.+.+
T Consensus 372 ~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 372 ELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLL 426 (457)
T ss_pred hhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHh
Confidence 35789999999999999999999 6666777888888777877777776665543
No 41
>KOG4163|consensus
Probab=97.37 E-value=0.00026 Score=46.84 Aligned_cols=61 Identities=28% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHhh
Q psy14271 4 KKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64 (65)
Q Consensus 4 ~~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~~ 64 (65)
..+.+.+.+|.+-+.+|+|.-+=+|+++++++.|.+-.+++++...++++++...+.++|.
T Consensus 389 rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe 449 (551)
T KOG4163|consen 389 RDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLE 449 (551)
T ss_pred cccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999988877664
No 42
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.046 Score=36.90 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
...+-.+..|+-.|+|+.+++|.+ ...|.+.+|.+.+++...++...+...+
T Consensus 447 er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 447 ERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred cccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchhhccHHHHHHHh
Confidence 455667889999999999999988 7888999999999988888877776643
No 43
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.16 Score=34.39 Aligned_cols=57 Identities=7% Similarity=-0.071 Sum_probs=46.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCc--eeeecHHHHHHH-HHHH
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTRE--EETISRDKLLDT-LQEK 62 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~--~~~~~~~e~~~~-i~~~ 62 (65)
+...+.++..++-.++|..+-+|.++.++.++++-+.++.+ ....+....+.. +...
T Consensus 329 ~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ 388 (500)
T COG0442 329 PDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAAL 388 (500)
T ss_pred CCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHH
Confidence 35567789999999999999999999999999999988877 466677777666 4433
No 44
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=70.55 E-value=15 Score=19.77 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=24.1
Q ss_pred cEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 22 HWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 22 ~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
.|+|+.|-+ .++.+.+.|-..+....++.+++....
T Consensus 95 H~vVv~g~~--~~~~~~i~DP~~~~~~~~~~~~f~~~w 130 (141)
T cd02549 95 HAMVVIGYD--RKGNVYVNDPGGGRRLVVSFDEFEKAW 130 (141)
T ss_pred eEEEEEEEc--CCCCEEEECCCCCcCEEEeHHHHHHHH
Confidence 344455544 256688888766666788998887654
No 45
>PRK03972 ribosomal biogenesis protein; Validated
Probab=68.32 E-value=23 Score=21.65 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=33.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCC
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLT 44 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~ 44 (65)
..++++-++.|...|...++||++.--.-+.+.+-++-.
T Consensus 35 k~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~ 73 (208)
T PRK03972 35 KKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGP 73 (208)
T ss_pred CccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCC
Confidence 457899999999999999999999877777788877643
No 46
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=66.08 E-value=13 Score=17.67 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHhhhcCCcEEEEEcccccccCeEE
Q psy14271 13 LQYCEDNQIHWCIVIGQSELASNSVK 38 (65)
Q Consensus 13 ~k~A~~~~~~~~vivG~~E~~~~~v~ 38 (65)
-+.|++.|+++-.|+.-.+ ..+.+.
T Consensus 25 a~kAd~~GA~~y~I~~~~~-~~~~~~ 49 (56)
T PF07338_consen 25 AKKADEKGAKYYRITSASE-DGNNWH 49 (56)
T ss_dssp HHHHHHTT-SEEEEEEEEE-CSSEEE
T ss_pred HHHHHHcCCCEEEEEEEEc-CCCeEE
Confidence 4569999999999987776 444443
No 47
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=64.74 E-value=14 Score=19.39 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=16.6
Q ss_pred HHHHHHHhhhcCCcEEEEEcc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~ 29 (65)
|..++++|...|.+|.++|..
T Consensus 59 lr~~~~~A~~~G~~~~Lvv~~ 79 (87)
T PF15649_consen 59 LRDYVKYAKENGYRFNLVVNH 79 (87)
T ss_pred HHHHHHHHHHcCCcEEEEEcC
Confidence 455667788889999999964
No 48
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=62.65 E-value=17 Score=17.68 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=20.6
Q ss_pred ccccCeEEEEEcCC-CceeeecHHHHH
Q psy14271 31 ELASNSVKLRNVLT-REEETISRDKLL 56 (65)
Q Consensus 31 E~~~~~v~vk~~~~-~~~~~~~~~e~~ 56 (65)
+..+++.+|+.++. ++...+|+.+|.
T Consensus 31 de~~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T TIGR02861 31 DEQSGTARVYSLDNPGKEQDVPVNDLE 57 (58)
T ss_pred cCCCCeEEEEECCCCCcEEEEEHHHcc
Confidence 34678999999984 778899987763
No 49
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=60.59 E-value=26 Score=19.05 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCC
Q psy14271 10 LDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLT 44 (65)
Q Consensus 10 ~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~ 44 (65)
=.+++.+...|-|+.++.|.... -|.+.|.++..
T Consensus 62 l~~Lr~~~~~g~p~~Lv~G~G~~-~G~~vI~si~e 95 (121)
T PF06995_consen 62 LDKLRAMAESGEPLPLVIGSGKV-LGKWVITSISE 95 (121)
T ss_pred HHHHHHHHHcCCceEEEECCCce-eEEEEEEEEec
Confidence 45778888899999999997655 56788877643
No 50
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=60.33 E-value=19 Score=17.50 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=20.3
Q ss_pred ccccCeEEEEEc-CCCceeeecHHHHH
Q psy14271 31 ELASNSVKLRNV-LTREEETISRDKLL 56 (65)
Q Consensus 31 E~~~~~v~vk~~-~~~~~~~~~~~e~~ 56 (65)
+..+++.+|+.+ ..++...+|+.+|.
T Consensus 31 de~~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T PF08141_consen 31 DEENGTARVHPLDNPEEEQEVPVNDLE 57 (58)
T ss_pred cCCCCeEEEEECCCCCcEEEEEHHHcc
Confidence 357789999999 45677888988764
No 51
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=59.46 E-value=11 Score=19.13 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=13.9
Q ss_pred CHHHHHHHhhhcCCcEEEE
Q psy14271 8 KLLDQLQYCEDNQIHWCIV 26 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vi 26 (65)
++...-++|...|++|.|+
T Consensus 68 k~~~~~~y~~~~g~~f~iv 86 (88)
T PF08722_consen 68 KLEIEREYWEEQGIPFRIV 86 (88)
T ss_dssp HHHHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 4666778999999999987
No 52
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=58.32 E-value=26 Score=18.93 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=24.5
Q ss_pred CHHHHHHHhhhcCCcEEEEE--cccccccCeEEEEE
Q psy14271 8 KLLDQLQYCEDNQIHWCIVI--GQSELASNSVKLRN 41 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~viv--G~~E~~~~~v~vk~ 41 (65)
.|..-.+.|...|+++.+|. |-+|...|+.|+--
T Consensus 62 ~L~~l~~~a~~~gl~~~~i~Dag~Tei~pgs~Tvla 97 (116)
T PF01981_consen 62 ELLELAKKAKEAGLPHYLIRDAGRTEIPPGSVTVLA 97 (116)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCcCCCCCeEEEE
Confidence 45666778888999998875 45677788877754
No 53
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=57.58 E-value=31 Score=18.95 Aligned_cols=35 Identities=11% Similarity=0.318 Sum_probs=25.5
Q ss_pred CHHHHHHHhhhcCCcEEEEE--cccccccCeEEEEEc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVI--GQSELASNSVKLRNV 42 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~viv--G~~E~~~~~v~vk~~ 42 (65)
.+..-.+.|...|+++.++. |..|...|+.|+--+
T Consensus 61 el~~l~~~a~~~~l~~~~v~DAG~Tev~~gt~T~lai 97 (115)
T cd02430 61 ELLELKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGI 97 (115)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccCCCCceEEEe
Confidence 35566677788899988884 667888888877543
No 54
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=57.57 E-value=26 Score=19.24 Aligned_cols=35 Identities=11% Similarity=0.287 Sum_probs=25.9
Q ss_pred CHHHHHHHhhhcCCcEEEE--EcccccccCeEEEEEc
Q psy14271 8 KLLDQLQYCEDNQIHWCIV--IGQSELASNSVKLRNV 42 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vi--vG~~E~~~~~v~vk~~ 42 (65)
.+-.-.+.|...|+++.++ -|..|...|+.|+--+
T Consensus 61 el~~l~~~a~~~~l~~~~v~DAG~Tei~pgs~Tvlai 97 (115)
T TIGR00283 61 ELLEIYHKAESLGLVTGLIRDAGHTQIPPGTITAVGI 97 (115)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCcceeCCCCcEEEEE
Confidence 3555566788889999888 5678888888887543
No 55
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=55.61 E-value=24 Score=17.24 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccccCeEEEEEcCC-CceeeecHHHHHH
Q psy14271 31 ELASNSVKLRNVLT-REEETISRDKLLD 57 (65)
Q Consensus 31 E~~~~~v~vk~~~~-~~~~~~~~~e~~~ 57 (65)
+..+++.+|+.++. .+...+|+.+|..
T Consensus 31 de~~~tA~I~~l~~p~~~~~Vpv~~L~E 58 (59)
T PRK03174 31 DEQNGTARIHPLDNPNQEQSVPLASLKE 58 (59)
T ss_pred cCCCCeEEEEECCCCCcEEEEEHHHhcc
Confidence 35678999999974 6778999988753
No 56
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=54.32 E-value=33 Score=18.76 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=26.1
Q ss_pred CHHHHHHHhhhcCCcEEEE--EcccccccCeEEEEEc
Q psy14271 8 KLLDQLQYCEDNQIHWCIV--IGQSELASNSVKLRNV 42 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vi--vG~~E~~~~~v~vk~~ 42 (65)
.+....+.|...|+++.++ -|..|...|+.|+--+
T Consensus 59 el~~l~~~a~~~~l~~~~v~DAG~Tei~~gs~Tvlai 95 (113)
T PRK04322 59 ELLELKEKAERLGLPTALIRDAGLTQLPPGTVTALGI 95 (113)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcccCCCCcEEEEe
Confidence 3556667788889998888 4668888888887543
No 57
>KOG3430|consensus
Probab=53.39 E-value=20 Score=19.09 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=16.6
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
-+++.|+. +.|+.|.+|||..-
T Consensus 42 ~iKkefDk--kyG~~WhcivG~~F 63 (90)
T KOG3430|consen 42 FIKKEFDK--KYGPTWHCIVGRNF 63 (90)
T ss_pred HHHHHHhh--hcCCccEEEEcCCc
Confidence 35666665 67999999999863
No 58
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=53.32 E-value=28 Score=17.20 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.8
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+...+..|.+.+-|.+|.+|.+
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~ 27 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGAD 27 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETT
T ss_pred hhHHHHHHHHHHcCCCEEEEEECC
Confidence 357889999999999999999874
No 59
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=52.44 E-value=50 Score=19.84 Aligned_cols=37 Identities=3% Similarity=0.075 Sum_probs=31.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcC
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVL 43 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~ 43 (65)
.++..-...|...|+..++||++.--.-+.+++.++.
T Consensus 38 ~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~ 74 (191)
T COG2136 38 KSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLE 74 (191)
T ss_pred cchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEec
Confidence 4567778899999999999999988777888888874
No 60
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=52.43 E-value=38 Score=18.52 Aligned_cols=35 Identities=9% Similarity=0.300 Sum_probs=25.5
Q ss_pred CHHHHHHHhhhcCCcEEEEE--cccccccCeEEEEEc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVI--GQSELASNSVKLRNV 42 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~viv--G~~E~~~~~v~vk~~ 42 (65)
.+..-.+.|...|+++.++. |.+|...|+.|+--+
T Consensus 61 ~l~~l~~~a~~~gl~~~~v~DAG~Tqi~~gt~Tvlai 97 (115)
T cd02407 61 ELLELAKKAKELGLPHSLIQDAGRTQIPPGTPTVLAI 97 (115)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCcccCCCCceEEEE
Confidence 45666677888899998886 456677888777544
No 61
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=52.06 E-value=27 Score=18.89 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.8
Q ss_pred CHHHHHHHhhhcCCcEEEEE
Q psy14271 8 KLLDQLQYCEDNQIHWCIVI 27 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~viv 27 (65)
+....+.+|++.|++|.|.-
T Consensus 57 skE~Ai~yaer~G~~Y~V~~ 76 (101)
T PF04800_consen 57 SKEDAIAYAERNGWDYEVEE 76 (101)
T ss_dssp SHHHHHHHHHHCT-EEEEE-
T ss_pred CHHHHHHHHHHcCCeEEEeC
Confidence 56788999999999998874
No 62
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=52.00 E-value=33 Score=17.77 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=16.7
Q ss_pred CHHHHHHHhhh----cCCcEEEEEccc
Q psy14271 8 KLLDQLQYCED----NQIHWCIVIGQS 30 (65)
Q Consensus 8 ~l~kq~k~A~~----~~~~~~vivG~~ 30 (65)
.+..|+.|... .|.+-++|+|..
T Consensus 22 ~V~~qI~yvk~~~~~~GpK~VLViGaS 48 (78)
T PF12242_consen 22 NVENQIEYVKSQGKINGPKKVLVIGAS 48 (78)
T ss_dssp HHHHHHHHHHHC---TS-SEEEEES-S
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEecC
Confidence 46788888777 677889999875
No 63
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=50.29 E-value=20 Score=16.79 Aligned_cols=17 Identities=6% Similarity=-0.120 Sum_probs=12.8
Q ss_pred CHHHHHHHhhhcCCcEE
Q psy14271 8 KLLDQLQYCEDNQIHWC 24 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~ 24 (65)
.-+++++.|.+.|+|.+
T Consensus 43 ~~~~K~~~A~~~gi~vV 59 (63)
T PF12738_consen 43 PEGKKYRKAKEWGIPVV 59 (63)
T ss_dssp --HHHHHHHHHCTSEEE
T ss_pred CCcHHHHHHHHCCCcEE
Confidence 45788999999998865
No 64
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=50.13 E-value=31 Score=16.86 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=20.5
Q ss_pred ccccCeEEEEEcCC-CceeeecHHHHH
Q psy14271 31 ELASNSVKLRNVLT-REEETISRDKLL 56 (65)
Q Consensus 31 E~~~~~v~vk~~~~-~~~~~~~~~e~~ 56 (65)
+..+++.+|..+++ .+...+++.+|.
T Consensus 31 de~~~tA~V~~~~~p~~e~~Vpv~~L~ 57 (59)
T PRK01625 31 DEQSGVAQVYDVSNPGESVHVDVTALE 57 (59)
T ss_pred cCCCCeEEEEecCCCCcEEEEEHHHcc
Confidence 34678999999976 667889988775
No 65
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=49.41 E-value=23 Score=21.89 Aligned_cols=27 Identities=4% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.-+.++++.|.+.|..-++.||+...
T Consensus 103 ~~~i~~Kv~~a~~~gl~pIvCiGE~~~ 129 (242)
T cd00311 103 DEDVAKKVKAALEAGLTPILCVGETLE 129 (242)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 567899999999999999999999763
No 66
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=49.29 E-value=44 Score=21.15 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=32.8
Q ss_pred HhhhcCCcEEEEEccccccc---------CeEEEEEcCC-CceeeecHHHHHHHHHH
Q psy14271 15 YCEDNQIHWCIVIGQSELAS---------NSVKLRNVLT-REEETISRDKLLDTLQE 61 (65)
Q Consensus 15 ~A~~~~~~~~vivG~~E~~~---------~~v~vk~~~~-~~~~~~~~~e~~~~i~~ 61 (65)
.|-..|+|.+++-|++.... -++.+|.--+ .....++.++....|++
T Consensus 142 ~Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~ 198 (266)
T cd08663 142 VAGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIRE 198 (266)
T ss_pred HHhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHH
Confidence 46778999999999976533 2677776333 45567788787777654
No 67
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=49.09 E-value=17 Score=16.29 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+.++..-++.-.+.++..+.|++++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~V~d~~ 39 (57)
T PF00571_consen 15 DDSLEEALEIMRKNGISRLPVVDED 39 (57)
T ss_dssp TSBHHHHHHHHHHHTSSEEEEESTT
T ss_pred cCcHHHHHHHHHHcCCcEEEEEecC
Confidence 5678888888889999999998654
No 68
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=48.83 E-value=44 Score=21.13 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=32.3
Q ss_pred HhhhcCCcEEEEEccccccc---------CeEEEEEcCC-CceeeecHHHHHHHHHH
Q psy14271 15 YCEDNQIHWCIVIGQSELAS---------NSVKLRNVLT-REEETISRDKLLDTLQE 61 (65)
Q Consensus 15 ~A~~~~~~~~vivG~~E~~~---------~~v~vk~~~~-~~~~~~~~~e~~~~i~~ 61 (65)
.|-..|+|.+++-|++.... -+|.+|.--+ .....++.++....|++
T Consensus 141 ~Ag~~gVPV~lvsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~ 197 (265)
T cd00281 141 TAGYYGVPVVMVAGDAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIRE 197 (265)
T ss_pred HHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHH
Confidence 56778999999999965532 2677776333 35567777777766654
No 69
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=47.90 E-value=46 Score=21.05 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=31.0
Q ss_pred HhhhcCCcEEEEEccccccc---------CeEEEEEcCC-CceeeecHHHHHHHHHH
Q psy14271 15 YCEDNQIHWCIVIGQSELAS---------NSVKLRNVLT-REEETISRDKLLDTLQE 61 (65)
Q Consensus 15 ~A~~~~~~~~vivG~~E~~~---------~~v~vk~~~~-~~~~~~~~~e~~~~i~~ 61 (65)
.|-..|+|.+++-|++.... -+|.+|.--+ .....++.++....|++
T Consensus 142 ~Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~ 198 (270)
T cd08769 142 YAGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELRE 198 (270)
T ss_pred HHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHH
Confidence 57788999999999954422 3566676333 34566777777666543
No 70
>KOG2506|consensus
Probab=47.14 E-value=23 Score=23.28 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=21.0
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
....|-+.+|+-.++|.++|+|.+-
T Consensus 305 ~~~~k~~e~ad~~~ap~~liigge~ 329 (371)
T KOG2506|consen 305 KPVSKLVEFADSLAAPLCLIIGGEG 329 (371)
T ss_pred ccchhhhHHHhhccCceEEEEccCc
Confidence 3556778999999999999999863
No 71
>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in all sub-families.
Probab=46.68 E-value=42 Score=17.33 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEcccccccCeEEEEEcCCCceeeecHHHHHHH
Q psy14271 23 WCIVIGQSELASNSVKLRNVLTREEETISRDKLLDT 58 (65)
Q Consensus 23 ~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~ 58 (65)
|+|+.|-+ ++.+.+.+-..+....++.+++.+.
T Consensus 81 ~~Vl~~~~---~~~~~i~dp~~~~~~~~~~~~l~~~ 113 (122)
T cd02259 81 FVILYGAD---KGQVLIADPLEEGPVTLSESELEER 113 (122)
T ss_pred EEEEEEEc---CCEEEEECCcccCCEEeCHHHHHhh
Confidence 55555433 5667777764455568888888764
No 72
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=46.40 E-value=17 Score=19.95 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=15.5
Q ss_pred CCCHHHHHHHhhh---cCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCED---NQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~---~~~~~~vivG~~ 30 (65)
+.+|+.+|.+|-+ .+..-+++||.+
T Consensus 42 g~dLG~Rm~~a~~~~~~g~~~vvliGsD 69 (122)
T PF09837_consen 42 GGDLGERMANAFQQAARGYEPVVLIGSD 69 (122)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEE-SS
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEcCC
Confidence 4566666666554 458888889875
No 73
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=46.16 E-value=44 Score=21.10 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=33.5
Q ss_pred HhhhcCCcEEEEEccccccc---------CeEEEEEcCCCceeeecHHHHHHHHHHH
Q psy14271 15 YCEDNQIHWCIVIGQSELAS---------NSVKLRNVLTREEETISRDKLLDTLQEK 62 (65)
Q Consensus 15 ~A~~~~~~~~vivG~~E~~~---------~~v~vk~~~~~~~~~~~~~e~~~~i~~~ 62 (65)
.|-..|+|.+++-|++.... -++.+|.--+.....++.++....|++.
T Consensus 142 ~Ag~~gVPV~lvsGD~~~~~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~ 198 (263)
T cd08770 142 TAAYLGVPVVFVSGDAGLCAEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKG 198 (263)
T ss_pred HHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHH
Confidence 56778999999999976543 2677776333555667888777776543
No 74
>KOG1432|consensus
Probab=46.06 E-value=23 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=22.3
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELA 33 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~ 33 (65)
.++.|.+.-|...||||++++|-.+.+
T Consensus 121 ~sl~kAvaP~I~~~IPwA~~lGNHDde 147 (379)
T KOG1432|consen 121 TSLMKAVAPAIDRKIPWAAVLGNHDDE 147 (379)
T ss_pred HHHHHHhhhHhhcCCCeEEEecccccc
Confidence 357788888999999999999986643
No 75
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=45.33 E-value=46 Score=21.97 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHH
Q psy14271 13 LQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61 (65)
Q Consensus 13 ~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~ 61 (65)
+..|++.+..|-.........+..+.+..........++..++.+.+..
T Consensus 251 ~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~~~~i~~~~l~~ii~~ 299 (420)
T PRK09472 251 PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEP 299 (420)
T ss_pred HHHHHHHHHhcceeccccCCCCceeEecCCCCCCCeEEcHHHHHHHHHH
Confidence 4567777666655554433345678887665555567776666555443
No 76
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=43.88 E-value=40 Score=19.87 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.9
Q ss_pred HHHHHHhhhcCCcEEEEEccccc
Q psy14271 10 LDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 10 ~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.-.++.|...|++.++++|+-..
T Consensus 98 r~~le~a~~~G~~~v~vlGdp~Y 120 (171)
T COG3153 98 REGLEALRLAGASAVVVLGDPTY 120 (171)
T ss_pred HHHHHHHHHCCCCEEEEecCccc
Confidence 44678899999999999998544
No 77
>PTZ00333 triosephosphate isomerase; Provisional
Probab=43.50 E-value=36 Score=21.24 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+.-+.++++.|.+.|..-++.||+..
T Consensus 108 d~~I~~Kv~~al~~gl~pIlCvGE~~ 133 (255)
T PTZ00333 108 NEIVAQKVKNALENGLKVILCIGETL 133 (255)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 56789999999999999999999964
No 78
>KOG1643|consensus
Probab=43.38 E-value=30 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.-+.++.++|...|...++.||++..
T Consensus 105 d~~i~~K~~~Al~eGl~ViaCIGE~le 131 (247)
T KOG1643|consen 105 DEFIADKTAHALAEGLKVIACIGETLE 131 (247)
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccHH
Confidence 445789999999999999999999754
No 79
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=43.18 E-value=31 Score=19.55 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.++...++.+...|.|++.+.|.=.+
T Consensus 28 ~~~~~~~I~~~~~~G~pi~aeCGG~~~ 54 (158)
T PF07685_consen 28 NRGLKEAIREAAEAGGPIYAECGGYQY 54 (158)
T ss_pred HhCHHHHHHHHHHcCCcEEEEchHHHH
Confidence 467999999999999999999887443
No 80
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=43.15 E-value=61 Score=18.19 Aligned_cols=25 Identities=0% Similarity=0.142 Sum_probs=21.7
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
-++..+.+.|...|+..++|+...+
T Consensus 71 C~F~~K~~nA~~aGA~aVIIyn~~~ 95 (138)
T cd02122 71 CTFEEKIKLAAERNASAVVIYNNPG 95 (138)
T ss_pred CCHHHHHHHHHHCCCcEEEEEECCC
Confidence 5788899999999999999996654
No 81
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=42.92 E-value=28 Score=21.66 Aligned_cols=27 Identities=4% Similarity=0.063 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.-+.++++.|.+.|..-++.||+...
T Consensus 105 d~~v~~K~~~a~~~gl~pIvCiGEt~~ 131 (250)
T PRK00042 105 DELVNKKVKAALKAGLTPILCVGETLE 131 (250)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCcHH
Confidence 456789999999999999999999643
No 82
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=42.65 E-value=25 Score=23.55 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHhhhcCCcEEEEEccccccc
Q psy14271 10 LDQLQYCEDNQIHWCIVIGQSELAS 34 (65)
Q Consensus 10 ~kq~k~A~~~~~~~~vivG~~E~~~ 34 (65)
..++..|-+.|+|+++.+|.-++-+
T Consensus 260 p~Rl~AA~~~GIP~Vvs~GalDmVn 284 (403)
T PF06792_consen 260 PDRLEAAARAGIPQVVSPGALDMVN 284 (403)
T ss_pred chHHHHHHHcCCCEEEecCccceec
Confidence 3588899999999999999877654
No 83
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=42.35 E-value=44 Score=21.08 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=21.4
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccccccCeEE
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVK 38 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~ 38 (65)
.=...++.|.+.|||.+.++ +++..-+.|-
T Consensus 167 ~e~iAv~EA~klgIPVvAlv-DTn~dpd~VD 196 (252)
T COG0052 167 KEKIAVKEANKLGIPVVALV-DTNCDPDGVD 196 (252)
T ss_pred HhHHHHHHHHHcCCCEEEEe-cCCCCCccCc
Confidence 34567899999999999999 4444444333
No 84
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=42.09 E-value=47 Score=16.71 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=19.5
Q ss_pred CCHHHHHHHhhhcCCcEEEEEc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIG 28 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG 28 (65)
.++..+++.|.+.|+.-+||+.
T Consensus 44 ~~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 44 CSFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp SCHHHHHHHHHHTTESEEEEE-
T ss_pred CCHHHHHHHHHHcCCEEEEEEe
Confidence 4789999999999999999997
No 85
>PRK14565 triosephosphate isomerase; Provisional
Probab=41.86 E-value=25 Score=21.77 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.-+.++++.|.+.|..-++.||+...
T Consensus 104 d~~V~~Kv~~al~~gl~pIvCiGE~~e 130 (237)
T PRK14565 104 DSDIRLKAESAIESGLIPIICVGETLE 130 (237)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 356788999999999999999999643
No 86
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=40.90 E-value=81 Score=20.26 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHH
Q psy14271 13 LQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62 (65)
Q Consensus 13 ~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~ 62 (65)
+..|++.+..+.....+.......+.+.....+....++.+++.+.+...
T Consensus 243 ~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~ 292 (371)
T TIGR01174 243 LEEAERIKIKYGCASIPLEGPDENIEIPSVGERPPRSLSRKELAEIIEAR 292 (371)
T ss_pred HHHHHHHHHHeeEecccCCCCCCEEEeccCCCCCCeEEcHHHHHHHHHHH
Confidence 45677776666654433222345677776666666788887776655443
No 87
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=40.87 E-value=16 Score=22.57 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+.-+.++++.|...|..-++.||+.
T Consensus 103 d~~i~~Kv~~al~~gl~pIvCvGE~ 127 (244)
T PF00121_consen 103 DEIINKKVKAALENGLTPIVCVGET 127 (244)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEESSB
T ss_pred cHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4568899999999999999999994
No 88
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=40.45 E-value=67 Score=17.89 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..++..|.+.|...|+..++|+...
T Consensus 69 ~C~F~~K~~nA~~aGA~avIv~n~~ 93 (139)
T cd02132 69 ECAFTEKAKIAEAGGASALLIINDQ 93 (139)
T ss_pred CCCHHHHHHHHHHcCCcEEEEEECC
Confidence 3578889999999999999999544
No 89
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=40.13 E-value=54 Score=20.73 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=29.4
Q ss_pred HhhhcCCcEEEEEccccccc---------CeEEEEEc-CCCceeeecHHHHHHHHHH
Q psy14271 15 YCEDNQIHWCIVIGQSELAS---------NSVKLRNV-LTREEETISRDKLLDTLQE 61 (65)
Q Consensus 15 ~A~~~~~~~~vivG~~E~~~---------~~v~vk~~-~~~~~~~~~~~e~~~~i~~ 61 (65)
.|-..|+|.+++-|++.... -++.+|.- +......++.+++...|++
T Consensus 142 ~Ag~~GVPV~lVsGD~~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~ 198 (265)
T PF04951_consen 142 LAGYYGVPVVLVSGDDALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIRE 198 (265)
T ss_dssp HHHHTT--EEEEEEEHHHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHH
T ss_pred HHhhcCCcEEEEeCcHHHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHH
Confidence 56788999999999965432 35777763 3335677788888777654
No 90
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=39.98 E-value=64 Score=17.56 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+-++..|.+.|...|+..++|....+
T Consensus 49 ~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 49 GCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred CCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 35788999999999999999985443
No 91
>PRK14567 triosephosphate isomerase; Provisional
Probab=39.77 E-value=32 Score=21.51 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.-+.++++.|.+.|..-++.||+...
T Consensus 104 d~~v~~Kv~~al~~gl~pI~CiGEt~e 130 (253)
T PRK14567 104 DEDVFKKLNKIIDTTITPVVCIGESLD 130 (253)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCcHH
Confidence 345789999999999999999999643
No 92
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=39.65 E-value=45 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=13.3
Q ss_pred HHHHHHHhhhcCCcEEEEEccc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+++.|+. +.|.+|-+|||..
T Consensus 42 iK~~lD~--~yG~~Wh~IVG~~ 61 (89)
T PF01221_consen 42 IKQELDK--KYGPTWHCIVGKS 61 (89)
T ss_dssp HHHHHHH--HHSS-EEEEEESE
T ss_pred HHHHHhc--ccCCceEEEECCc
Confidence 4444443 5599999999985
No 93
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=39.46 E-value=69 Score=17.73 Aligned_cols=26 Identities=4% Similarity=0.151 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+-++..+.+.|...|+..+||+....
T Consensus 54 ~CsF~~K~~~Aq~aGA~aVII~nn~~ 79 (120)
T cd02129 54 NCTFYEKARLAQSLGAEGLLIVSRER 79 (120)
T ss_pred CcCHHHHHHHHHHCCCCEEEEEECCC
Confidence 35788899999999999999986543
No 94
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=39.45 E-value=49 Score=17.04 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRN 41 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~ 41 (65)
..++..-++.-.+.+++++.|++++..--|.++..+
T Consensus 84 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~d 119 (123)
T cd04627 84 DQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTD 119 (123)
T ss_pred CCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHH
Confidence 456666777778889999999966432235555444
No 95
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=39.32 E-value=37 Score=21.35 Aligned_cols=25 Identities=4% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
.-++++++.|.+.|..-++.+|+.+
T Consensus 108 ~~i~~K~~aa~~~Gl~pIlCvGEtl 132 (251)
T COG0149 108 ELIAKKVKAAKEAGLTPILCVGETL 132 (251)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 3467999999999999999999987
No 96
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=38.50 E-value=68 Score=17.43 Aligned_cols=18 Identities=6% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHhhhcCCcEEEEEcccc
Q psy14271 14 QYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 14 k~A~~~~~~~~vivG~~E 31 (65)
+.|+..|++|-.|+.-.|
T Consensus 71 ~KAda~GA~yYrIi~~~e 88 (104)
T PRK14864 71 AKANAAGADYYVIVMVDE 88 (104)
T ss_pred HHHHHcCCCEEEEEEccc
Confidence 469999999999997755
No 97
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=38.05 E-value=55 Score=16.20 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRN 41 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~ 41 (65)
+.++..-++...+.+.++++++.+...--|.++.++
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~d 106 (110)
T cd04601 71 GTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKD 106 (110)
T ss_pred CCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhh
Confidence 455677788888888888888865443334455443
No 98
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=37.85 E-value=49 Score=16.89 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKL 39 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~v 39 (65)
+.++...++...+.++++++|+.+...--|.++.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 85 DTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQ 118 (124)
T ss_pred CCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEh
Confidence 4677778888888889999998644322333443
No 99
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=37.72 E-value=48 Score=16.54 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..++..-++.....+.++++++.+.
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04590 72 STPLDDLLEEMRKERSHMAIVVDEY 96 (111)
T ss_pred CCcHHHHHHHHHhcCCcEEEEEECC
Confidence 4567778888888899999988653
No 100
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=37.02 E-value=48 Score=15.21 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=16.1
Q ss_pred CCHHHHHHHhhhcCCcEEE
Q psy14271 7 PKLLDQLQYCEDNQIHWCI 25 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~v 25 (65)
...++|.+.-.+.|+||++
T Consensus 15 k~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCHHHHHHHHHHCCCeeEE
Confidence 4568899999999999986
No 101
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=36.82 E-value=31 Score=19.39 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCCHHHHHHHhhhcCCcEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCI 25 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~v 25 (65)
..+|+.-++.|++.|++.++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~Vl 30 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVI 30 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEE
Confidence 46788999999999986554
No 102
>COG3720 HemS Putative heme degradation protein [Inorganic ion transport and metabolism]
Probab=36.16 E-value=86 Score=20.48 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=25.5
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLR 40 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk 40 (65)
+..+..-|..|...+-|+.++||.. |.|+|.
T Consensus 230 n~al~~~l~~Aae~~lpIMvFVGNr----gcvQIh 260 (349)
T COG3720 230 NSALAQMLESAAEDGLPIMVFVGNR----GCVQIH 260 (349)
T ss_pred cHHHHHHHHHHhccCCceEEEEcCC----cEEEEe
Confidence 4578889999999999999999986 555553
No 103
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=36.15 E-value=52 Score=18.97 Aligned_cols=22 Identities=5% Similarity=0.365 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCcEEEEEccc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+.+-++.+...++.++++.|+-
T Consensus 30 ~~~~~~~~~~~~~d~i~~~GD~ 51 (223)
T cd00840 30 FEEIVELAIEEKVDFVLIAGDL 51 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCcc
Confidence 6677777888888888888775
No 104
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=36.14 E-value=51 Score=17.77 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=15.3
Q ss_pred HHHHHhhhcCCcEEEEEccc
Q psy14271 11 DQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 11 kq~k~A~~~~~~~~vivG~~ 30 (65)
+.+..+...++.++++.|+-
T Consensus 26 ~~~~~~~~~~~d~vi~~GDl 45 (144)
T cd07400 26 RLLAEIKALDPDLVVITGDL 45 (144)
T ss_pred HHHHHHhccCCCEEEECCCC
Confidence 45666778889999988874
No 105
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=35.91 E-value=1.1e+02 Score=18.95 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHH
Q psy14271 20 QIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDT 58 (65)
Q Consensus 20 ~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~ 58 (65)
...+++|+|-++ +++.+.|-|-.......+|.+++...
T Consensus 112 ~~H~i~v~G~d~-~~~~~~v~D~~~~~~~~~~~~~l~~A 149 (317)
T PF14399_consen 112 ADHYIVVYGYDE-EEDVFYVSDPPSYEPGRLPYEDLAKA 149 (317)
T ss_pred CCcEEEEEEEeC-CCCEEEEEcCCCCcceeecHHHHHHH
Confidence 467788887765 47888888875566688898888653
No 106
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=35.80 E-value=60 Score=16.22 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRN 41 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~ 41 (65)
..++..-+......+++++.++.+ ..--|.++..+
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~d 107 (111)
T cd04626 73 EDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKD 107 (111)
T ss_pred CCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHH
Confidence 456777777778888888888754 22234455443
No 107
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=35.75 E-value=45 Score=17.75 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=21.0
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
..+-...+.|..+|++.+.|.+..++
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~~l 82 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGGKL 82 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 35677889999999999999876544
No 108
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=35.56 E-value=32 Score=21.10 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=17.6
Q ss_pred CCCHHHHHHHhhhcCCcEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCI 25 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~v 25 (65)
..+|+.-++.|.+.|+|.++
T Consensus 102 ~~sLk~Ll~qa~~~G~p~Vl 121 (212)
T PRK13730 102 EEGLKRMLGETRHYGIPATL 121 (212)
T ss_pred HHHHHHHHHHHHHhCCcEEE
Confidence 57889999999999999876
No 109
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=35.54 E-value=81 Score=17.40 Aligned_cols=24 Identities=4% Similarity=-0.159 Sum_probs=20.7
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+..+.+.|...|+..++|+...
T Consensus 53 C~F~~K~~~Aq~aGA~avII~n~~ 76 (127)
T cd02125 53 CFFTLKAWNAQQAGAAAVLVADNV 76 (127)
T ss_pred cCHHHHHHHHHHCCCcEEEEEECC
Confidence 478889999999999999998544
No 110
>PRK15492 triosephosphate isomerase; Provisional
Probab=35.33 E-value=42 Score=21.05 Aligned_cols=27 Identities=4% Similarity=0.036 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
+.-+.++++.|.+.|..-++.||+...
T Consensus 113 d~~v~~Kv~~a~~~gl~pIvCiGE~~e 139 (260)
T PRK15492 113 DQEENAKVLAALKHDFTTLLCVGETLE 139 (260)
T ss_pred hHHHHHHHHHHHHCCCEEEEEcCCcHH
Confidence 345788999999999999999999643
No 111
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=34.85 E-value=90 Score=17.73 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+-++..+.+.|.+.|+..++|+....
T Consensus 77 ~CtF~~Kv~nAq~aGA~avII~n~~~ 102 (153)
T cd02123 77 NCSFETKVRNAQRAGYKAAIVYNDES 102 (153)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCC
Confidence 35788999999999999999985543
No 112
>PRK02399 hypothetical protein; Provisional
Probab=34.32 E-value=35 Score=22.96 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHHhhhcCCcEEEEEccccc
Q psy14271 11 DQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 11 kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+|..|-+.|+|+++.+|.-++
T Consensus 262 ~Rl~Aa~~~gIP~Vvs~GalDm 283 (406)
T PRK02399 262 DRLEAAARTGIPQVVSPGALDM 283 (406)
T ss_pred cHHHHHHHcCCCEEecCCceee
Confidence 4788999999999999987655
No 113
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=33.89 E-value=88 Score=17.31 Aligned_cols=24 Identities=0% Similarity=0.101 Sum_probs=20.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+..|.+.|...|+..++|+...
T Consensus 66 c~f~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 66 CTFATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred CCHHHHHHHHHHcCCcEEEEEECC
Confidence 468889999999999999998544
No 114
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=33.41 E-value=56 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=22.2
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
.+...++.++..|.++++-||.-.
T Consensus 60 ~~~~dI~~cq~~G~KVlLSIGG~~ 83 (280)
T cd02877 60 QLGADIKHCQSKGKKVLLSIGGAG 83 (280)
T ss_pred hHHHHHHHHHHCCCEEEEEccCCC
Confidence 689999999999999999999964
No 115
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=32.97 E-value=46 Score=18.40 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=13.3
Q ss_pred HHHHHHHhhhcCCcEEEEEcc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~ 29 (65)
+..=++.|.+.|++|.++=..
T Consensus 77 ~~~YiklA~~~~~~fTiv~~~ 97 (120)
T PF07997_consen 77 QSKYIKLANKHGIPFTIVNDP 97 (120)
T ss_dssp HHHHHHHHHHTT--EEEE---
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 455678899999999997533
No 116
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.89 E-value=82 Score=16.79 Aligned_cols=25 Identities=0% Similarity=0.082 Sum_probs=20.4
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
..+-..++.|.+.|+|.+.|.+..+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4567888999999999999987643
No 117
>PTZ00059 dynein light chain; Provisional
Probab=31.60 E-value=64 Score=16.76 Aligned_cols=20 Identities=10% Similarity=0.461 Sum_probs=14.9
Q ss_pred HHHHHHHhhhcCCcEEEEEccc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+++.|+. +.|..|-+|||..
T Consensus 43 IK~~fD~--~yg~~WhciVG~~ 62 (90)
T PTZ00059 43 IKKEFDK--KYNPTWHCIVGRN 62 (90)
T ss_pred HHHHHHh--hcCCCCEEEEecC
Confidence 4555553 5699999999986
No 118
>PLN02429 triosephosphate isomerase
Probab=31.58 E-value=42 Score=21.78 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+.-+.++++.|.+.|..-++.||+..
T Consensus 166 d~~V~~Kv~~al~~GL~pIvCIGE~l 191 (315)
T PLN02429 166 DEFIGKKAAYALSEGLGVIACIGEKL 191 (315)
T ss_pred HHHHHHHHHHHHHCcCEEEEEcCCCH
Confidence 45678999999999999999999975
No 119
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=31.21 E-value=29 Score=13.94 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..++..-+......+..+++++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~v~~~~ 32 (49)
T smart00116 8 DTTLEEALELLREHGIRRLPVVDEE 32 (49)
T ss_pred CCcHHHHHHHHHHhCCCcccEECCC
Confidence 4456666666666788888888553
No 120
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=31.12 E-value=76 Score=21.48 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEE
Q psy14271 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLR 40 (65)
Q Consensus 1 ~~~~~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk 40 (65)
||-+++..+..|+.+-.+.+-.+.++|.+--.-.|-|++-
T Consensus 278 yFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLE 317 (423)
T COG4536 278 YFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLE 317 (423)
T ss_pred eecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHH
Confidence 4556678999999999999999999996654333444443
No 121
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.02 E-value=84 Score=16.54 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.0
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+-..++.|.++|+|.+.|.+..
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456788899999999999998754
No 122
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=30.81 E-value=43 Score=16.75 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLR 40 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk 40 (65)
..++..-++.....+..+++++.++..--|.++..
T Consensus 74 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~ 108 (113)
T cd04587 74 DTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVT 108 (113)
T ss_pred CCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHH
Confidence 45677778888888888888886533223444443
No 123
>PF14153 Spore_coat_CotO: Spore coat protein CotO
Probab=30.73 E-value=66 Score=19.26 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.0
Q ss_pred cccCeEEEEEcCCCceeeecHHHHHH
Q psy14271 32 LASNSVKLRNVLTREEETISRDKLLD 57 (65)
Q Consensus 32 ~~~~~v~vk~~~~~~~~~~~~~e~~~ 57 (65)
..++.|.|+.-.++....++++++.+
T Consensus 154 ~~~~~v~i~~~~~~~~~~i~~~~I~s 179 (185)
T PF14153_consen 154 YDEGEVSIMPFNQGEEIEIPIDDITS 179 (185)
T ss_pred ccCCEEEEeccCCCcceEeehhheee
Confidence 34688999988788889999998764
No 124
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=30.44 E-value=81 Score=15.85 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNV 42 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~ 42 (65)
..++..-++...+.+++++.++.++..--|.++.+++
T Consensus 75 ~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di 111 (114)
T cd04801 75 EESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADL 111 (114)
T ss_pred CCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccce
Confidence 4567777888888899999998653333355555543
No 125
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=30.39 E-value=76 Score=17.90 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=15.3
Q ss_pred HHHHHHHhhhcCCcEEEEEcccc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+++.|.. +.|..|-+|||..-
T Consensus 75 IKk~fDk--kYG~tWHCIVGk~F 95 (128)
T PLN03058 75 LKKEFDS--AYGPAWHCIVGTSF 95 (128)
T ss_pred HHHHHhh--hhCCceEEEECCcE
Confidence 4455554 67999999998764
No 126
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=30.27 E-value=46 Score=17.98 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=15.9
Q ss_pred CCCHHHHHHHhhhcCCcEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCI 25 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~v 25 (65)
...|+.-++.|.+.|+++++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~ 29 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVF 29 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEE
Confidence 46788889999988777665
No 127
>PRK14566 triosephosphate isomerase; Provisional
Probab=30.10 E-value=64 Score=20.32 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
.-+.++++.|.+.|..-++.||+..
T Consensus 115 ~~v~~Kv~~al~~gl~pIvCvGEtl 139 (260)
T PRK14566 115 NIVAEKFAAAQKHGLTPILCVGESG 139 (260)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcH
Confidence 4578899999999999999999964
No 128
>PRK14556 pyrH uridylate kinase; Provisional
Probab=29.83 E-value=82 Score=19.70 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=24.8
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccccccC
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSELASN 35 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~~~~ 35 (65)
.+.++++.....|+...|++|.-....|
T Consensus 42 ~~a~~i~~~~~~g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 42 PIINQIKTLTNFGVELALVVGGGNILRG 69 (249)
T ss_pred HHHHHHHHHHhCCcEEEEEECCCHHHhC
Confidence 5678899999999999999999888777
No 129
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=29.64 E-value=92 Score=16.24 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=22.3
Q ss_pred cEEEEEcccccccCeEEEEEcC-CCceeeecHHHHHHHH
Q psy14271 22 HWCIVIGQSELASNSVKLRNVL-TREEETISRDKLLDTL 59 (65)
Q Consensus 22 ~~~vivG~~E~~~~~v~vk~~~-~~~~~~~~~~e~~~~i 59 (65)
.|+|+.+-+ ++.+.+-+-. .+....++.+++....
T Consensus 80 ~~~Vl~~~~---~~~~~i~dp~~~~~~~~~~~~el~~~~ 115 (124)
T cd02421 80 RACVLLGVD---DGHARILDPESGGGEVEISLEELEEEY 115 (124)
T ss_pred CEEEEEEec---CCeEEEEccCCCCCcEEEcHHHHHhhC
Confidence 455555433 3668887765 4555688998887653
No 130
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.61 E-value=55 Score=19.54 Aligned_cols=31 Identities=6% Similarity=0.150 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHhhhc---CCcEEEEEccccc
Q psy14271 2 SYKKNPKLLDQLQYCEDN---QIHWCIVIGQSEL 32 (65)
Q Consensus 2 ~~~~~~~l~kq~k~A~~~---~~~~~vivG~~E~ 32 (65)
.|.....+.+.|+.|-+. ..+=|++||+.=+
T Consensus 88 i~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~ 121 (175)
T COG2179 88 IYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLF 121 (175)
T ss_pred eecccCccHHHHHHHHHHcCCChhHEEEEcchhh
Confidence 445556778888887654 5667899998543
No 131
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=29.56 E-value=1.1e+02 Score=16.93 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=24.8
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNV 42 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~ 42 (65)
.|..-.+.|...|+++.++ .|...|+.|+=-+
T Consensus 67 eL~~L~~~a~~~gi~~~l~---te~p~gt~T~Lai 98 (116)
T cd02429 67 ALKNLSSKLTENSIKHKLW---IEQPENIPTCIAL 98 (116)
T ss_pred HHHHHHHHHHHcCCCeEEE---EEcCCCCceEEEe
Confidence 4566677888999999997 4888888887554
No 132
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=29.43 E-value=73 Score=15.68 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..++..-+......+..++.++.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~vv~~~ 94 (109)
T cd04583 70 DASLRDVLGLVLKRGPKYVPVVDED 94 (109)
T ss_pred CCcHHHHHHHHHHcCCceeeEECCC
Confidence 4566666777777788888888654
No 133
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=29.39 E-value=82 Score=15.57 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKL 39 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~v 39 (65)
+.++..-++...+.+.+++.++.++..--|.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~ 105 (111)
T cd04612 72 DETLRDALKRMAERDIGRLPVVDDSGRLVGIVSR 105 (111)
T ss_pred CCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEH
Confidence 4566777777778888888888553333334443
No 134
>PLN02561 triosephosphate isomerase
Probab=29.36 E-value=70 Score=20.00 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+.-+.++++.|.+.|..-++.||+.
T Consensus 107 d~~v~~Kv~~al~~gl~pIvCvGE~ 131 (253)
T PLN02561 107 NEFVGDKVAYALSQGLKVIACVGET 131 (253)
T ss_pred hHHHHHHHHHHHHCcCEEEEEcCCC
Confidence 3557899999999999999999986
No 135
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=29.36 E-value=82 Score=15.61 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLR 40 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk 40 (65)
..++..-++.....++++++++.++..-.|.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~ 105 (110)
T cd04588 71 DEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRT 105 (110)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhH
Confidence 34566677777778888888885433223344433
No 136
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=29.34 E-value=57 Score=16.41 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=18.2
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
..++..-++...+.+.++++++.+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04585 83 DASVEEAAELMLERKISGLPVVDD 106 (122)
T ss_pred CCcHHHHHHHHHHcCCCceeEECC
Confidence 456777777777888888888865
No 137
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=29.09 E-value=77 Score=15.73 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKL 39 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~v 39 (65)
..++..-++.....+..+++++.+...--|.++.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~ 104 (110)
T cd04605 71 DEPIDVAARKMERHNISALPVVDAENRVIGIITS 104 (110)
T ss_pred CCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEH
Confidence 3457777777778888888888654333333433
No 138
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=28.87 E-value=1.5e+02 Score=18.86 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=27.7
Q ss_pred HHHHhhhcCCcEEEEEccccccc-------CeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 12 QLQYCEDNQIHWCIVIGQSELAS-------NSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 12 q~k~A~~~~~~~~vivG~~E~~~-------~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
--..|+..++||+++-+..++.. ..|.|-+. +++..-.++.+++.+
T Consensus 167 LpaLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~--g~ed~~~l~~lv~~~ 219 (263)
T PTZ00222 167 MPNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDV--NAEDEAALKNLIRSV 219 (263)
T ss_pred HHHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeC--CcccHHHHHHHHHHH
Confidence 44579999999999876666521 23445443 344444555555544
No 139
>KOG4230|consensus
Probab=28.66 E-value=62 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
.+|.||+..+.+.|+|.+|-|..
T Consensus 737 snl~k~i~n~~~fgipvvvain~ 759 (935)
T KOG4230|consen 737 SNLVKQIENIKKFGIPVVVAINK 759 (935)
T ss_pred HHHHHHHHhHHhcCCCEEEEecc
Confidence 47899999999999999998854
No 140
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=28.61 E-value=88 Score=19.77 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.3
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
..+.++++.+.+.|.+.++-+|...
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~ 84 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGAN 84 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 3578889999999999999999754
No 141
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=28.25 E-value=1e+02 Score=16.25 Aligned_cols=33 Identities=9% Similarity=0.291 Sum_probs=21.5
Q ss_pred cEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHH
Q psy14271 22 HWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDT 58 (65)
Q Consensus 22 ~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~ 58 (65)
.|+|+.+- .++.+.+-+- ......++.+++.+.
T Consensus 86 h~vVi~~~---~~~~~~i~dP-~~g~~~~~~~~f~~~ 118 (131)
T PF03412_consen 86 HFVVIYKI---DDGRVLIYDP-KKGKIKLSKEEFEEI 118 (131)
T ss_dssp EEEEEEEE---CCCEEEECCT-TTCEEEEEHHHHHHH
T ss_pred ceEEEEeE---cCcEEEEEeC-CCCeEEEeHHHHHhh
Confidence 45555543 5677888776 344577888888754
No 142
>PRK11573 hypothetical protein; Provisional
Probab=28.15 E-value=55 Score=21.72 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEc
Q psy14271 4 KKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNV 42 (65)
Q Consensus 4 ~~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~ 42 (65)
+...++...++.-.+.+..+++++.+-.--.|-||+.|+
T Consensus 268 pe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDi 306 (413)
T PRK11573 268 PEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI 306 (413)
T ss_pred CCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHH
Confidence 346788899999999999999999775555566666654
No 143
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=28.08 E-value=1e+02 Score=16.24 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=14.9
Q ss_pred cCeEEEEEcCCCceeeecHHHHHHH
Q psy14271 34 SNSVKLRNVLTREEETISRDKLLDT 58 (65)
Q Consensus 34 ~~~v~vk~~~~~~~~~~~~~e~~~~ 58 (65)
++.+.+.+- ......++.+++...
T Consensus 100 ~~~~~i~dp-~~~~~~~~~~ef~~~ 123 (136)
T cd02418 100 KKKILIADP-AVGITKISKEEFEKE 123 (136)
T ss_pred CCEEEEECC-CCCCEEeeHHHHHhh
Confidence 455666555 333557788888654
No 144
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.84 E-value=1e+02 Score=16.10 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=19.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+-..++.|.+.|++.++|.+..
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESST
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCC
Confidence 456778899999999999998654
No 145
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=27.65 E-value=94 Score=21.90 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.8
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
.+.+-++...+.++.++|+||.++
T Consensus 178 ~~~~~~~~l~~l~Id~LViIGGdd 201 (568)
T PLN02251 178 QFKQAEETATKLDLDGLVVIGGDD 201 (568)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCch
Confidence 467778888999999999999976
No 146
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=27.24 E-value=73 Score=16.11 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
+.++...+......+++++.++.+.
T Consensus 75 ~~~l~~~l~~~~~~~~~~~pVv~~~ 99 (114)
T cd04602 75 GITLEEANEILRESKKGKLPIVNDD 99 (114)
T ss_pred CCCHHHHHHHHHhcCCCceeEECCC
Confidence 4567778888888999999988543
No 147
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=27.10 E-value=67 Score=16.00 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
..++..-++.....++++++++..
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 73 DATVFEALLLMLERGIHHLPVVDD 96 (111)
T ss_pred CCcHHHHHHHHHHcCCCeeeEeEC
Confidence 457788888888888888888854
No 148
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=27.02 E-value=1.3e+02 Score=17.21 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=30.4
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceee
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEET 49 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~ 49 (65)
++...+..|...++..++++++..-....+++-++-+|....
T Consensus 36 ~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~ 77 (191)
T PF04427_consen 36 SLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLE 77 (191)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEE
T ss_pred chHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEE
Confidence 678889999999999999998887655667777776665433
No 149
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=27.01 E-value=87 Score=15.10 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVK 38 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~ 38 (65)
..++..-++.....+.+++.++.+...--|.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~ 106 (113)
T cd02205 74 DTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVT 106 (113)
T ss_pred CcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Confidence 456677777777778888888866533333333
No 150
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=26.96 E-value=54 Score=20.86 Aligned_cols=19 Identities=32% Similarity=0.912 Sum_probs=16.3
Q ss_pred HHhhhcCCcEEEEEccccc
Q psy14271 14 QYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 14 k~A~~~~~~~~vivG~~E~ 32 (65)
..|+..++||+++-+..++
T Consensus 169 ~LC~k~~VPY~iv~sK~eL 187 (266)
T PTZ00365 169 ALCRKKEVPYCIIKGKSRL 187 (266)
T ss_pred HHHhccCCCEEEECCHHHH
Confidence 7899999999998777665
No 151
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=26.63 E-value=88 Score=20.61 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=16.6
Q ss_pred HHHHHHHhhhcCCcEEEEE
Q psy14271 9 LLDQLQYCEDNQIHWCIVI 27 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~viv 27 (65)
+.+-++.|.+.|+|++++-
T Consensus 254 ~e~~L~~ake~~I~~vl~~ 272 (345)
T PF07611_consen 254 LEKFLKLAKENGIPVVLWW 272 (345)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 5677899999999999985
No 152
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=26.41 E-value=1e+02 Score=18.51 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=16.4
Q ss_pred CHHHHHHHhhh-cCCcEEEEEccc
Q psy14271 8 KLLDQLQYCED-NQIHWCIVIGQS 30 (65)
Q Consensus 8 ~l~kq~k~A~~-~~~~~~vivG~~ 30 (65)
-+.+.+..|.. .+..+++++|+=
T Consensus 29 yl~r~~~~a~~~l~PD~Vi~lGDL 52 (195)
T cd08166 29 YLKKTYHLALNFVQPDIVIFLGDL 52 (195)
T ss_pred HHHHHHHHHHhccCCCEEEEeccc
Confidence 46677777644 588888888874
No 153
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.92 E-value=85 Score=16.38 Aligned_cols=24 Identities=0% Similarity=0.111 Sum_probs=18.8
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
.+-.-.+.|.+.|++.++|.+..+
T Consensus 75 ~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 75 ETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCC
Confidence 355667889999999999987653
No 154
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=25.87 E-value=95 Score=15.80 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
+.++..-++.....+.++++++.+
T Consensus 86 ~~~l~~~~~~~~~~~~~~~~V~~~ 109 (125)
T cd04631 86 DDSIKDAAELMLEKRVGGLPVVDD 109 (125)
T ss_pred CCcHHHHHHHHHHcCCceEEEEcC
Confidence 456677777778888888888754
No 155
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=25.66 E-value=86 Score=18.14 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=21.8
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
-+++.-.+.|++.|+.+.++-|++-+
T Consensus 73 C~Ig~l~~lae~~g~~v~i~~Ggt~a 98 (158)
T PF01976_consen 73 CDIGDLKKLAEKYGYKVYIATGGTLA 98 (158)
T ss_pred CchhHHHHHHHHcCCEEEEEcChHHH
Confidence 46888899999999999998887654
No 156
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=25.29 E-value=68 Score=21.63 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=34.8
Q ss_pred HHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHH
Q psy14271 11 DQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61 (65)
Q Consensus 11 kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~ 61 (65)
--+..|++.+..|-.-.-+......++.+...++.....++...+...|..
T Consensus 248 t~~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~~~~~t~~~ls~II~a 298 (418)
T COG0849 248 TPFEEAERIKIKYGSALISLADDEETIEVPSVGSDIPRQVTRSELSEIIEA 298 (418)
T ss_pred CCHHHHHHHHHHcCccccCcCCCcceEecccCCCcccchhhHHHHHHHHHh
Confidence 345677777777766665555556788888887777777777776655543
No 157
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=25.22 E-value=1.2e+02 Score=16.21 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.7
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
..+..+.+.|...|+..+|++...+
T Consensus 54 c~f~~K~~~A~~aGA~avIi~n~~~ 78 (122)
T cd04816 54 CPFADKQKVAAARGAVAVIVVNNSD 78 (122)
T ss_pred CCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 3577889999999999999985544
No 158
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=24.93 E-value=1e+02 Score=15.17 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=18.5
Q ss_pred EEEcccccccCeEEEEEcCCCceeeecHHHH
Q psy14271 25 IVIGQSELASNSVKLRNVLTREEETISRDKL 55 (65)
Q Consensus 25 vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~ 55 (65)
+++..+-...|.+.+|.=++|++..+++.++
T Consensus 22 llLnrRps~~G~~WiKyED~G~e~E~dl~~v 52 (60)
T PF06613_consen 22 LLLNRRPSSEGLAWIKYEDDGEEFEVDLGSV 52 (60)
T ss_dssp E-TTB--SSTTEEEEEETTT--EEEEEGGG-
T ss_pred hhhccCCCcCCeEEEEEccCCcEEEEEccce
Confidence 4444455677889999888888887766543
No 159
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.69 E-value=1e+02 Score=18.33 Aligned_cols=25 Identities=4% Similarity=0.171 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
...+-.-++.|...|+|.+.+.|..
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3567888999999999999999864
No 160
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.67 E-value=1e+02 Score=19.53 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.4
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+..|++.-++.|+||-++-|-.-.
T Consensus 91 A~~EQm~~L~~~gI~yevvPGVss~ 115 (254)
T COG2875 91 ALAEQMRELEALGIPYEVVPGVSSF 115 (254)
T ss_pred HHHHHHHHHHHcCCCeEEeCCchHH
Confidence 4788999999999999999886543
No 161
>PHA02546 47 endonuclease subunit; Provisional
Probab=24.58 E-value=1e+02 Score=19.80 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=5.9
Q ss_pred CCcEEEEEcccc
Q psy14271 20 QIHWCIVIGQSE 31 (65)
Q Consensus 20 ~~~~~vivG~~E 31 (65)
++|++++.|--+
T Consensus 76 gi~v~~I~GNHD 87 (340)
T PHA02546 76 GITLHVLVGNHD 87 (340)
T ss_pred CCeEEEEccCCC
Confidence 455555555444
No 162
>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=24.54 E-value=96 Score=18.74 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEc
Q psy14271 5 KNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNV 42 (65)
Q Consensus 5 ~~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~ 42 (65)
++..+..-.++-...-..++||-.+-++.-|.+++|.-
T Consensus 70 SG~~V~~~~~fy~i~~~~ilVvhDdLdl~~G~vrlk~~ 107 (190)
T COG0193 70 SGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLG 107 (190)
T ss_pred cHHHHHHHHHHhCCCHHHEEEEeeccCCCCceEEEEcC
Confidence 34566666666666677889999899999999999974
No 163
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=24.52 E-value=1.9e+02 Score=18.05 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=30.5
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeeecHHHHHHHHHHHh
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~~~~e~~~~i~~~~ 63 (65)
.+..++..|...|+|.++|--+.. .. .....-+++++.+.+...+
T Consensus 211 g~~eKi~AA~~lgi~vivI~RP~~-~~----------~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 211 GELEKVKAAEALGINVIRIARPQT-IP----------GVAIFDDISQLNQFVARLL 255 (256)
T ss_pred chHHHHHHHHHcCCcEEEEeCCCC-CC----------CCccCCCHHHHHHHHHHhc
Confidence 567888999999999999865542 11 1123346788887776654
No 164
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=24.35 E-value=1.3e+02 Score=16.11 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=20.3
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+..+.+.|...|+..+|++...
T Consensus 55 c~f~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 55 CPFGDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred CCHHHHHHHHHHCCCcEEEEEECC
Confidence 457789999999999999999544
No 165
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.35 E-value=1.2e+02 Score=15.89 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=24.9
Q ss_pred hhcCCcEEEEEcccccccCeEEEEEcCCCce-eeecHHHHHHHHH
Q psy14271 17 EDNQIHWCIVIGQSELASNSVKLRNVLTREE-ETISRDKLLDTLQ 60 (65)
Q Consensus 17 ~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~-~~~~~~e~~~~i~ 60 (65)
...+..+-+-+ +++...-.|+|.|..+++- ..+|.+++++...
T Consensus 51 ~~~~~~l~F~v-de~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~ 94 (107)
T PF03646_consen 51 QALNTSLRFSV-DEESGRVVVKVIDKETGEVIRQIPPEELLDLAK 94 (107)
T ss_dssp TTSS--EEEEE-EEETTEEEEEEEETTT-SEEEEE-HHHHHHHHH
T ss_pred HhcCCceEEEE-ecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHH
Confidence 34466666666 3333333466677777776 7889999987754
No 166
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.22 E-value=1.1e+02 Score=15.25 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=17.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..++...+......+.++++++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~Vv~~~ 93 (109)
T cd04606 69 DDDQEEVARLFEKYDLLALPVVDEE 93 (109)
T ss_pred CCCHHHHHHHHHHcCCceeeeECCC
Confidence 3466777777777788887777543
No 167
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.07 E-value=96 Score=15.73 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=16.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
...+..-++.....+..++.++.+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~vv~~ 106 (122)
T cd04637 83 DTPVDEASKLLLENSISCLPVVDE 106 (122)
T ss_pred CCcHHHHHHHHHHcCCCeEeEECC
Confidence 345566666666777777777754
No 168
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=24.02 E-value=86 Score=20.30 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.3
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+++-++...+.++..++++|.++-
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd~s 104 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGS 104 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHH
Confidence 4566777888899999999999754
No 169
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=24.01 E-value=1.3e+02 Score=19.46 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=20.7
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+++-.+...+.++.+++++|.+.-
T Consensus 82 ~~~~~~~~l~~~~Id~LivIGGdgS 106 (324)
T TIGR02483 82 GDDKIVANLKELGLDALIAIGGDGT 106 (324)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchH
Confidence 4667777888999999999999764
No 170
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=23.96 E-value=1.2e+02 Score=21.24 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=20.9
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+.+-++...+.++..+|+||.++-
T Consensus 149 ~~~~~~~~l~~~~Id~LviIGGdgS 173 (539)
T TIGR02477 149 QFAKALTTAKKLKLDGLVIIGGDDS 173 (539)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchH
Confidence 4566777889999999999999764
No 171
>PRK03202 6-phosphofructokinase; Provisional
Probab=23.90 E-value=1.2e+02 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.1
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+.+-++...+.++..++++|.++-
T Consensus 81 ~~~~~~~~l~~~~Id~Li~IGGd~s 105 (320)
T PRK03202 81 GRAKAIENLKKLGIDALVVIGGDGS 105 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHH
Confidence 4677788889999999999999764
No 172
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=23.70 E-value=16 Score=15.80 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=9.8
Q ss_pred CCCHHHHHHHhhhc
Q psy14271 6 NPKLLDQLQYCEDN 19 (65)
Q Consensus 6 ~~~l~kq~k~A~~~ 19 (65)
-.+..+||+.|...
T Consensus 20 vgk~rkqfk~asdl 33 (37)
T PF08025_consen 20 VGKVRKQFKEASDL 33 (37)
T ss_pred HHHHHHHHhHHhhc
Confidence 35678888887643
No 173
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=23.70 E-value=99 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.8
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+.+-++.-.+.++..++++|.++-
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGGdgs 104 (317)
T cd00763 80 GQAKAIEQLKKHGIDALVVIGGDGS 104 (317)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchH
Confidence 3556667778899999999999754
No 174
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=23.54 E-value=1.1e+02 Score=17.58 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=13.7
Q ss_pred HHHHHHhhhcCCcEEEEEccc
Q psy14271 10 LDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 10 ~kq~k~A~~~~~~~~vivG~~ 30 (65)
-..+++|.+.| ..++++|..
T Consensus 18 i~~L~~Ak~lG-d~liVv~a~ 37 (140)
T COG0615 18 IEFLRQAKKLG-DELIVVVAR 37 (140)
T ss_pred HHHHHHHHHhC-CeEEEEEec
Confidence 35789999999 555555444
No 175
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=23.54 E-value=88 Score=20.00 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=18.5
Q ss_pred CCHHHHHHHhhhcCCcEEEEE
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVI 27 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~viv 27 (65)
+|+.+-++.|.+.++|++.++
T Consensus 143 eKi~r~~e~A~~~~lPlV~l~ 163 (292)
T PRK05654 143 EKIVRAVERAIEEKCPLVIFS 163 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 577888999999999999987
No 176
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=23.54 E-value=1.2e+02 Score=15.62 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=16.9
Q ss_pred cCeEEEEEcCCCceeeecHHHHHHH
Q psy14271 34 SNSVKLRNVLTREEETISRDKLLDT 58 (65)
Q Consensus 34 ~~~v~vk~~~~~~~~~~~~~e~~~~ 58 (65)
.+.+.+-+-..+....++.+++.+.
T Consensus 89 ~~~~~i~dp~~~~~~~~~~~el~~~ 113 (121)
T cd02417 89 GQKYLIQDPISQRPEVLSREEFEAR 113 (121)
T ss_pred CCCEEEECCCcCCCeecCHHHHHhh
Confidence 4567777765554567888888764
No 177
>PRK10259 hypothetical protein; Provisional
Probab=23.22 E-value=1e+02 Score=16.10 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=16.5
Q ss_pred HHHHH-HHhhhcCCcEEEEEcccc
Q psy14271 9 LLDQL-QYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 9 l~kq~-k~A~~~~~~~~vivG~~E 31 (65)
+..++ +.|+..|+++-.|++..+
T Consensus 51 ~~~~La~KAd~~GA~~YrIi~a~~ 74 (86)
T PRK10259 51 LEAKLAEKAAAAGASGYSITSATN 74 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecC
Confidence 33444 469999999888887654
No 178
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=23.13 E-value=1.2e+02 Score=17.99 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=11.1
Q ss_pred HHHhhhcCCcEEEEEccc
Q psy14271 13 LQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 13 ~k~A~~~~~~~~vivG~~ 30 (65)
++.+.+.++.++++.|+-
T Consensus 28 ~~~~~~~~~d~iv~~GDl 45 (214)
T cd07399 28 VDNAEALNIAFVLHLGDI 45 (214)
T ss_pred HHHHHHcCCCEEEECCCc
Confidence 344555667777777663
No 179
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=23.10 E-value=1.1e+02 Score=20.04 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCCcEEEEEccccc
Q psy14271 10 LDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 10 ~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
...++.|.+.|||.+-++ ++..
T Consensus 165 ~~AI~EA~kl~IPvIaiv-DTn~ 186 (326)
T PRK12311 165 DIAIQEAQRLGIPVAAIV-DTNC 186 (326)
T ss_pred hHHHHHHHHcCCCEEEEe-eCCC
Confidence 456888999999999998 4443
No 180
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=22.80 E-value=1.2e+02 Score=15.29 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNV 42 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~ 42 (65)
+.++...++.....+..+++++.++..--|.++.+++
T Consensus 9 ~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl 45 (114)
T cd04619 9 NATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDV 45 (114)
T ss_pred CCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHH
Confidence 4567777777777888999988666544567776653
No 181
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=22.75 E-value=1.1e+02 Score=14.95 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=15.1
Q ss_pred hhcCCcEEEEEcccccccCeEEEEE
Q psy14271 17 EDNQIHWCIVIGQSELASNSVKLRN 41 (65)
Q Consensus 17 ~~~~~~~~vivG~~E~~~~~v~vk~ 41 (65)
.+.+..|.+++|+.... |.+|+
T Consensus 28 ~q~~~~f~ivi~~q~i~---velkd 49 (68)
T PF13051_consen 28 KQLESHFAIVIGEQSID---VELKD 49 (68)
T ss_pred hhcCCcEEEEECCeEEE---EEeee
Confidence 45678899999886433 55555
No 182
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=22.75 E-value=96 Score=21.55 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCcee-eecHHHHHHHH
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEE-TISRDKLLDTL 59 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~-~~~~~e~~~~i 59 (65)
-++..++..|-+.|++.++|= ++...=++-++++-+.+-. .-++.++++.+
T Consensus 325 tsmAa~IQeaiEagak~lliD--ED~sAtNllvrdVlake~eG~rtl~pl~dei 376 (554)
T COG3044 325 TSMAAWIQEAIEAGAKTLLID--EDTSATNLLVRDVLAKESEGERTLTPLVDEI 376 (554)
T ss_pred hHHHHHHHHHHHcCCcEEEEc--cCcchhheehhhHHHHHhcCcccchHHHHhh
Confidence 478999999999999998873 3333334666765433222 22444444444
No 183
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.71 E-value=1.1e+02 Score=18.69 Aligned_cols=21 Identities=10% Similarity=0.381 Sum_probs=12.4
Q ss_pred HHHHHHHhhhcCCcEEEEEcc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~ 29 (65)
+.+.++.....++.++|+.|+
T Consensus 29 l~~~i~~i~~~~~d~vv~~GD 49 (267)
T cd07396 29 LEEAVEEWNRESLDFVVQLGD 49 (267)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 455555555556666666655
No 184
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.69 E-value=93 Score=19.83 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=18.7
Q ss_pred CCHHHHHHHhhhcCCcEEEEEc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIG 28 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG 28 (65)
+|+.+-++.|.+.++|+++++.
T Consensus 142 eKi~r~~e~A~~~~lPlV~l~d 163 (285)
T TIGR00515 142 EKFVRAIEKALEDNCPLIIFSA 163 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEEc
Confidence 5777888999999999999873
No 185
>PRK11263 cardiolipin synthase 2; Provisional
Probab=22.65 E-value=1.3e+02 Score=20.06 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 1 ~~~~~~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
|+.+ +..+-..+..|.+.|+..-|++..
T Consensus 228 Yf~p-~~~l~~aL~~Aa~RGV~V~ii~~~ 255 (411)
T PRK11263 228 YFFP-GYRLLRALRNAARRGVRVRLILQG 255 (411)
T ss_pred CcCC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445 577889999999999999999854
No 186
>PRK01060 endonuclease IV; Provisional
Probab=22.63 E-value=1.2e+02 Score=18.42 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=18.1
Q ss_pred CHHHHHHHhhhcCCcEEEEEcc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~ 29 (65)
.+.+.++.|...|++++++...
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 4788889999999999888543
No 187
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=22.62 E-value=1.2e+02 Score=20.59 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=24.6
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 1 MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 1 ~~~~~~~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
|+.+ +..+-..+..|.+.|+.+-|++|+..
T Consensus 273 YF~p-~~~l~~~L~~a~~rGv~V~Ii~~~~~ 302 (451)
T PRK09428 273 YFNL-PAILVRNIIRLLRRGKKVEIIVGDKT 302 (451)
T ss_pred CcCC-CHHHHHHHHHHHhcCCcEEEEcCCcc
Confidence 4455 57788999999999999999998763
No 188
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.61 E-value=1.1e+02 Score=15.11 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
.++...++.....+.++++|+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~Vv~~~ 97 (112)
T cd04624 74 EPVAEAAKLMRKNNIRHHLVVDKG 97 (112)
T ss_pred CcHHHHHHHHHHcCccEEEEEcCC
Confidence 456667777777777777777543
No 189
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=22.59 E-value=1.5e+02 Score=16.77 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=17.0
Q ss_pred HHHHHHHhhhcCCcEEEEEcccc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~~E 31 (65)
+.+-.+...+.++..+++.|+--
T Consensus 30 ~~~l~~~~~~~~~d~lii~GDl~ 52 (172)
T cd07391 30 LERLDRLIEEYGPERLIILGDLK 52 (172)
T ss_pred HHHHHHHHHhcCCCEEEEeCccc
Confidence 45555667778899999998853
No 190
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=22.53 E-value=1.5e+02 Score=16.19 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=20.6
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
.++..+.+.|.+.|+.-+||+...
T Consensus 51 C~f~~K~~~Aq~aGA~avII~n~~ 74 (126)
T cd02126 51 CMFVEKARRVQKAGAIGGIVIDNN 74 (126)
T ss_pred CcHHHHHHHHHHCCCcEEEEEECC
Confidence 578889999999999999998443
No 191
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=22.49 E-value=1.3e+02 Score=21.08 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.1
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
.+.+-++...+.++..+++||.++
T Consensus 154 ~~~~i~~~l~~~~Id~LviIGGdd 177 (550)
T cd00765 154 QFKQAEETAKKLDLDALVVIGGDD 177 (550)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCch
Confidence 456677778999999999999976
No 192
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=22.47 E-value=1.3e+02 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.3
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+.+-++...+.++..+|+||.++-
T Consensus 161 ~~~~i~e~l~~l~Id~LvvIGGddS 185 (610)
T PLN03028 161 QVNAALAACEALKLDGLVIIGGVTS 185 (610)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchH
Confidence 3566677889999999999998754
No 193
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=22.37 E-value=70 Score=18.98 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=11.4
Q ss_pred hhhcCCcEEEEEccccc
Q psy14271 16 CEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 16 A~~~~~~~~vivG~~E~ 32 (65)
.++.+.|+++|.|+++.
T Consensus 111 vE~i~~piLli~g~dD~ 127 (213)
T PF08840_consen 111 VEKIKGPILLISGEDDQ 127 (213)
T ss_dssp GGG--SEEEEEEETT-S
T ss_pred HHHcCCCEEEEEeCCCC
Confidence 46678999999998764
No 194
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.26 E-value=1.2e+02 Score=15.13 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRN 41 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~ 41 (65)
..++..-++.....+.+++.++.+...--|.++.++
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~d 109 (113)
T cd04607 74 GSSREEILALMRERSIRHLPILDEEGRVVGLATLDD 109 (113)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHH
Confidence 456777777777888888888854332234444433
No 195
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=22.25 E-value=2e+02 Score=17.52 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLR 40 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk 40 (65)
..+++.-+|-|.-.|+..+++.+..-..-+.-.+|
T Consensus 101 p~NlGaI~Rta~afG~~~vil~~~~~~~~~~~~~r 135 (237)
T TIGR00186 101 PHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVK 135 (237)
T ss_pred CccHHHHHHHHHHcCCCEEEECCCCcCCCCCceee
Confidence 57899999999999999998887654333333333
No 196
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.21 E-value=1.3e+02 Score=16.82 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=19.9
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+-...+.|.+.|+|.+.|-+..
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 456778899999999999998753
No 197
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=22.17 E-value=1.3e+02 Score=21.09 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=20.8
Q ss_pred CHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.+.+-++...+.++..+|+||.++-
T Consensus 152 ~~~~i~~~l~~~~Id~LviIGGd~S 176 (555)
T PRK07085 152 QKEACLETVKKLKLDGLVIIGGDDS 176 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchH
Confidence 4577777889999999999999753
No 198
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.15 E-value=1.2e+02 Score=14.84 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.0
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
+.++...++.....+.++++++.+
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~Vv~~ 90 (105)
T cd04599 67 EASLLEAKRLMEEKKIERLPVLRE 90 (105)
T ss_pred CCCHHHHHHHHHHcCCCEeeEEEC
Confidence 456777788888889999888854
No 199
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=22.10 E-value=1.3e+02 Score=15.43 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHhhhcCCcEEEEEcc
Q psy14271 12 QLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 12 q~k~A~~~~~~~~vivG~ 29 (65)
....+...++.++|+.|+
T Consensus 23 ~~~~~~~~~~d~ii~~GD 40 (200)
T PF00149_consen 23 LDEIAAENKPDFIIFLGD 40 (200)
T ss_dssp HHHHHHHTTTSEEEEEST
T ss_pred HHHHhccCCCCEEEeecc
Confidence 344455556666666665
No 200
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=21.94 E-value=93 Score=13.66 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=15.0
Q ss_pred ccccCeEEEEEcCCCceeeecHH
Q psy14271 31 ELASNSVKLRNVLTREEETISRD 53 (65)
Q Consensus 31 E~~~~~v~vk~~~~~~~~~~~~~ 53 (65)
+...+.++++-.. |+..+++.+
T Consensus 20 ~~~g~~vtV~~~~-G~~~tv~~d 41 (42)
T PF02736_consen 20 EEEGDKVTVKTED-GKEVTVKKD 41 (42)
T ss_dssp EEESSEEEEEETT-TEEEEEEGG
T ss_pred EEcCCEEEEEECC-CCEEEeCCC
Confidence 4456788888765 777776654
No 201
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=21.88 E-value=1.7e+02 Score=16.59 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=22.0
Q ss_pred CHHHHHHHhhhcCCcEEEEEcccccc
Q psy14271 8 KLLDQLQYCEDNQIHWCIVIGQSELA 33 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vivG~~E~~ 33 (65)
.+..+.+.|.+.|+.-+|++.+....
T Consensus 73 ~~~~K~~~A~~~GA~aVIi~~d~~~~ 98 (137)
T cd04820 73 SSNEKARYAAKAGAIGMITLTTPRSE 98 (137)
T ss_pred cHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 47789999999999999999776543
No 202
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=21.78 E-value=1.2e+02 Score=14.91 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=17.3
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
..++..-++.....+.++++++.+
T Consensus 72 ~~~l~~~l~~~~~~~~~~~~Vv~~ 95 (111)
T cd04611 72 DTSLYDARQLMREHGIRHLVVVDD 95 (111)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECC
Confidence 346667777777788888888754
No 203
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=21.78 E-value=1.2e+02 Score=16.67 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=18.6
Q ss_pred HHHHHHhhhcCCcEEEEEcccccc
Q psy14271 10 LDQLQYCEDNQIHWCIVIGQSELA 33 (65)
Q Consensus 10 ~kq~k~A~~~~~~~~vivG~~E~~ 33 (65)
-.-+-.|...++|.+++.|.....
T Consensus 75 ~~~l~~A~~~~~Pll~i~~~~~~~ 98 (155)
T cd07035 75 VTGLANAYLDSIPLLVITGQRPTA 98 (155)
T ss_pred HHHHHHHHhhCCCEEEEeCCCccc
Confidence 345677888899999999886543
No 204
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=21.74 E-value=1.1e+02 Score=15.18 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=15.1
Q ss_pred CCHHHHHHHh-hhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYC-EDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A-~~~~~~~~vivG~~ 30 (65)
-..++-.+.+ +..+.+|++-+|.+
T Consensus 25 IG~~klr~l~~~~~~~~f~~~~G~r 49 (67)
T PF09035_consen 25 IGEKKLRELAEENPDCPFVLWIGNR 49 (67)
T ss_dssp S-HHHHHHHHHH-TT-SSEEEETTE
T ss_pred ccHHHHHHHHHhCCCCCEEEEECCE
Confidence 3455555666 67799999999875
No 205
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=21.71 E-value=1.4e+02 Score=15.56 Aligned_cols=26 Identities=4% Similarity=0.120 Sum_probs=16.3
Q ss_pred ccCeEEEEEcCCCceeeecHHHHHHHH
Q psy14271 33 ASNSVKLRNVLTREEETISRDKLLDTL 59 (65)
Q Consensus 33 ~~~~v~vk~~~~~~~~~~~~~e~~~~i 59 (65)
.++.+.+-+-..+ ...++.+++.+..
T Consensus 93 ~~~~~~i~dp~~~-~~~~~~~el~~~~ 118 (127)
T cd02419 93 SRRRIVIHDPALG-KRKLSLEEASRHF 118 (127)
T ss_pred cCCEEEEECCccC-CEEEcHHHHHhhC
Confidence 3456666665443 4578888887643
No 206
>PRK12342 hypothetical protein; Provisional
Probab=21.69 E-value=1.9e+02 Score=18.06 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=23.0
Q ss_pred HhhhcCCcEEEEEcccccccCeEEEEE-cCCC
Q psy14271 15 YCEDNQIHWCIVIGQSELASNSVKLRN-VLTR 45 (65)
Q Consensus 15 ~A~~~~~~~~vivG~~E~~~~~v~vk~-~~~~ 45 (65)
-|...|+|++-.+-.-+.+.+.+++.. +..+
T Consensus 131 lA~~Lg~P~vt~v~~~~~~~~~~~v~r~~e~g 162 (254)
T PRK12342 131 LGELLQLPVINAVSKIQRQGNKLIVERTLEDD 162 (254)
T ss_pred HHHHhCCCcEeeEEEEEEeCCEEEEEEEcCCe
Confidence 477889998888877777788888765 4433
No 207
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.65 E-value=1.1e+02 Score=14.35 Aligned_cols=22 Identities=0% Similarity=-0.061 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhhhcCCcEEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVI 27 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~viv 27 (65)
..++...++.|.+.|.+.+.|-
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iT 35 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAIT 35 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEe
Confidence 4678999999999999999987
No 208
>PRK13695 putative NTPase; Provisional
Probab=21.63 E-value=1.4e+02 Score=16.74 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcCCCceeee---cHHHHHHHHHHH
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETI---SRDKLLDTLQEK 62 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~~~~~~~~---~~~e~~~~i~~~ 62 (65)
+...+..+-..+.|+++++.......-.-.++.+..+.-..+ +.+++...+...
T Consensus 115 ~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 115 FVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred HHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 456677777788888888876543322223444444444444 334555554443
No 209
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.59 E-value=99 Score=16.00 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=18.6
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..++...++.-...+++++.++.++
T Consensus 86 ~~~l~~~l~~m~~~~~~~lpVvd~~ 110 (126)
T cd04640 86 NASVGDVVETLKASGRQHALVVDRE 110 (126)
T ss_pred cCcHHHHHHHHHHCCCceEEEEECC
Confidence 3466777777778899999988553
No 210
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.58 E-value=1.3e+02 Score=15.52 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEE
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRN 41 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~ 41 (65)
+.++..-++.-...+..++.|+.++..--|.++..+
T Consensus 74 ~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~d 109 (113)
T cd04597 74 NDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLD 109 (113)
T ss_pred cCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHH
Confidence 345666666666778888888865433334444443
No 211
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=21.45 E-value=1.5e+02 Score=18.20 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEE
Q psy14271 3 YKKNPKLLDQLQYCEDNQIHWCIV 26 (65)
Q Consensus 3 ~~~~~~l~kq~k~A~~~~~~~~vi 26 (65)
|. +.|+-+++..|.+.|..+.++
T Consensus 140 y~-g~SF~~Hl~~Ark~G~~~~~~ 162 (210)
T COG1920 140 YG-GVSFLRHLEEARKRGLVVLTY 162 (210)
T ss_pred cc-CccHHHHHHHHHHcCCEEEEe
Confidence 44 679999999999999988765
No 212
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=21.37 E-value=1.4e+02 Score=15.53 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=17.9
Q ss_pred CCHHHHHHHhhhcCCcEEEEEcccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSE 31 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E 31 (65)
..+..-.+||...+++|+++....+
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~ 92 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKE 92 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCe
Confidence 3567778899999999999987665
No 213
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=21.05 E-value=1.4e+02 Score=17.56 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=13.7
Q ss_pred HHHHHHHhhhc--CCcEEEEEcc
Q psy14271 9 LLDQLQYCEDN--QIHWCIVIGQ 29 (65)
Q Consensus 9 l~kq~k~A~~~--~~~~~vivG~ 29 (65)
+.+-++...+. ++.++|+.|+
T Consensus 27 l~~~~~~i~~~~~~~d~vi~~GD 49 (240)
T cd07402 27 LEAVLAHINALHPRPDLVLVTGD 49 (240)
T ss_pred HHHHHHHHHhcCCCCCEEEECcc
Confidence 45556665565 6777777776
No 214
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=20.98 E-value=86 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.7
Q ss_pred CCHHHHHHHhhhcCCcEEEEEc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIG 28 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG 28 (65)
+|+-+-+++|.+.+.|++++..
T Consensus 155 eKi~ra~e~A~~~rlPlV~l~~ 176 (296)
T CHL00174 155 EKITRLIEYATNESLPLIIVCA 176 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC
Confidence 5778889999999999998873
No 215
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.95 E-value=89 Score=16.15 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=18.4
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~ 29 (65)
..++..-++.....++++++++.+
T Consensus 87 ~~~l~~a~~~~~~~~~~~l~Vvd~ 110 (126)
T cd04642 87 SSTLKEVITKLVANKVHRVWVVDE 110 (126)
T ss_pred CCcHHHHHHHHHHhCCcEEEEECC
Confidence 456777778888888888888854
No 216
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.93 E-value=1.5e+02 Score=17.40 Aligned_cols=24 Identities=4% Similarity=0.230 Sum_probs=20.4
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+-.-++.|.+.|+|.+.|.|..
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456788899999999999999864
No 217
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.90 E-value=1.3e+02 Score=20.33 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.1
Q ss_pred CHHHHHHHhhhcCCcEEEE
Q psy14271 8 KLLDQLQYCEDNQIHWCIV 26 (65)
Q Consensus 8 ~l~kq~k~A~~~~~~~~vi 26 (65)
.+..-++.|...|++++++
T Consensus 219 ~~~~eL~rA~~LGa~~VV~ 237 (413)
T PTZ00372 219 AFLDDLQRCEQLGIKLYNF 237 (413)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 4778899999999999999
No 218
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.72 E-value=1.5e+02 Score=16.82 Aligned_cols=24 Identities=0% Similarity=0.133 Sum_probs=19.8
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
..+-..++.|.+.|++.+.|.+..
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCC
Confidence 456678899999999999998754
No 219
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=20.68 E-value=1.3e+02 Score=19.06 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCcEEEEEcc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIGQ 29 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG~ 29 (65)
|..|+..|...++|.+|=--.
T Consensus 116 f~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 116 FREQLELARELDVPVIVHTPR 136 (254)
T ss_pred HHHHHHHHHHcCCcEEEeCCC
Confidence 688999999999998875433
No 220
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=20.67 E-value=2.2e+02 Score=17.50 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=26.3
Q ss_pred cCCcEEEEEcccccccCeEEEEEcCCCc-eeeecHHHHH
Q psy14271 19 NQIHWCIVIGQSELASNSVKLRNVLTRE-EETISRDKLL 56 (65)
Q Consensus 19 ~~~~~~vivG~~E~~~~~v~vk~~~~~~-~~~~~~~e~~ 56 (65)
.--.|+|++|-+ .+.+.+.++|....+ ...++.+.+.
T Consensus 159 Y~GHYVVlcGyd-~~~~~~~yrdPa~~~~~c~~s~~~ld 196 (212)
T PF09778_consen 159 YQGHYVVLCGYD-AATKEFEYRDPASSDRVCRVSPEALD 196 (212)
T ss_pred ccEEEEEEEeec-CCCCeEEEeCCccccceeecCHHHHH
Confidence 345789999875 566889999987554 4666666554
No 221
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.60 E-value=1.3e+02 Score=18.25 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.2
Q ss_pred HHHHHHHhhhcCCcEEEEEc
Q psy14271 9 LLDQLQYCEDNQIHWCIVIG 28 (65)
Q Consensus 9 l~kq~k~A~~~~~~~~vivG 28 (65)
+++.++.|...|++++++.|
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~ 120 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAG 120 (283)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 67888999999999998754
No 222
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=20.60 E-value=89 Score=20.56 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 7 PKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 7 ~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.-+.++++.|.+.|..-++.||+...
T Consensus 115 ~~i~~Kv~~al~~gl~pIvCiGE~~e 140 (355)
T PRK14905 115 QEENEKVLAALKHGFITLLCIGETLE 140 (355)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcHH
Confidence 45679999999999999999999654
No 223
>KOG2507|consensus
Probab=20.43 E-value=1.1e+02 Score=21.14 Aligned_cols=30 Identities=3% Similarity=0.140 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEEccccc
Q psy14271 2 SYKKNPKLLDQLQYCEDNQIHWCIVIGQSEL 32 (65)
Q Consensus 2 ~~~~~~~l~kq~k~A~~~~~~~~vivG~~E~ 32 (65)
.|- ..++...+..|.++|+=|||+|..++.
T Consensus 2 lwf-kGnipeAIa~aK~kkalfVVyI~gddE 31 (506)
T KOG2507|consen 2 LWF-KGNIPEAIAEAKGKKALFVVYISGDDE 31 (506)
T ss_pred ccc-ccchHHHHHHhhcCCeEEEEEEecCch
Confidence 344 578999999999999999999855443
No 224
>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.
Probab=20.30 E-value=1.6e+02 Score=17.22 Aligned_cols=38 Identities=5% Similarity=0.063 Sum_probs=24.1
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEcccccccCeEEEEEcC
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVL 43 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~E~~~~~v~vk~~~ 43 (65)
+..+.+-.++-.-.--.++||..+-+..-|++++|.-+
T Consensus 67 G~~V~~~~~~~~i~~~~ilVihDdldl~~G~vrlk~~G 104 (171)
T cd00462 67 GEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGG 104 (171)
T ss_pred cHHHHHHHHhcCCChhHEEEEEecCCCCCceEEEeCCC
Confidence 44444444332222234788888888999999999754
No 225
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=20.11 E-value=1.7e+02 Score=15.90 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhhhcCCcEEEEEccc
Q psy14271 6 NPKLLDQLQYCEDNQIHWCIVIGQS 30 (65)
Q Consensus 6 ~~~l~kq~k~A~~~~~~~~vivG~~ 30 (65)
.-++..+.+.|...|+..+||....
T Consensus 44 ~C~F~~K~~~Aq~aGA~avII~n~~ 68 (118)
T cd02127 44 GCSFLTKAINAQKAGALAVIITDVN 68 (118)
T ss_pred CCCHHHHHHHHHHCCCcEEEEEECC
Confidence 3578889999999999999998544
Done!