RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14271
(65 letters)
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 66.6 bits (163), Expect = 3e-15
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
+ +L Q Q + I +C++IG E A+ L+++ + E+ ++ L + ++ +
Sbjct: 404 NFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRR 463
Query: 63 L 63
L
Sbjct: 464 L 464
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 55.7 bits (135), Expect = 2e-11
Identities = 4/56 (7%), Positives = 16/56 (28%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDT 58
K++ Y + +++ E V+++ + + +
Sbjct: 394 ILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAERGFA 449
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 53.4 bits (129), Expect = 1e-10
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 3 YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
L QL+Y + ++ G+ +L V +RN+ T +E + D +++ L +
Sbjct: 365 EIMERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQ 424
Query: 63 L 63
Sbjct: 425 A 425
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 49.1 bits (118), Expect = 5e-09
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 23 WCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+ +G+ EL + V L+ + T E+ +SR+++ L + L
Sbjct: 380 FAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 47.9 bits (115), Expect = 1e-08
Identities = 9/41 (21%), Positives = 26/41 (63%)
Query: 23 WCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKL 63
+V+G+SE+A+ + ++++ + E+ +++D + L+ L
Sbjct: 382 VAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 47.2 bits (113), Expect = 3e-08
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 22 HWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQE 61
+ IVIG EL +N + ++N+ T E ETI D L++ ++
Sbjct: 381 KFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 41.1 bits (97), Expect = 3e-06
Identities = 4/50 (8%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 23 WCIVIGQSELASNSVKLRN-------VLTREEETISRDKLLDTLQEKLKE 65
+ ++ G+ E+ + + ++ ++++ + L + L +
Sbjct: 411 FAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAMVA 460
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 31.6 bits (72), Expect = 0.007
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
I +G ++ + + L T E+ + +L++ +++ L
Sbjct: 341 IEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 381
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four
helix bundle, DNA binding protein; 1.95A {Mus musculus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Length = 454
Score = 31.2 bits (70), Expect = 0.013
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 23 WCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
+ +++ ++ L + ++LR+ T +E + KL D L + L
Sbjct: 397 FSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLA 438
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 30.8 bits (70), Expect = 0.016
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
+ IG +L + + T E+ T + +TL+E +K+
Sbjct: 374 VEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKD 414
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 29.5 bits (67), Expect = 0.048
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
+V G E+ S V +R ++ ++ +++++ LQ++++
Sbjct: 353 LVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 393
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 29.2 bits (66), Expect = 0.056
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 25 IVIGQSELASNSVKLRNVLTREE-ETISRDKLLDTLQEKLKE 65
I++G E+ +R R+ E ++ ++ + E K
Sbjct: 417 IIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKN 458
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET:
DNA; 3.10A {Homo sapiens}
Length = 459
Score = 28.9 bits (64), Expect = 0.077
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 23 WCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLK 64
+ +++ ++ L + + LR+ T +E + KL D L + +
Sbjct: 407 FTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS 448
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 28.7 bits (65), Expect = 0.095
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
+V G E+ S V +R ++ ++ +++++ LQ++++
Sbjct: 594 LVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 28.3 bits (64), Expect = 0.11
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 25 IVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
IV+G E+ +N V +R ++++ET+ +D+ + L ++++
Sbjct: 601 IVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRL 641
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 0.48
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 14/62 (22%)
Query: 9 LLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEE-----TISRDKLLDTLQEKL 63
L+ ++ E Q S + ++ R+ L + + +SR + L++ L
Sbjct: 94 LMSPIKT-EQRQ--------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 64 KE 65
E
Sbjct: 145 LE 146
Score = 26.0 bits (56), Expect = 0.88
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 11 DQLQYCEDNQIHWCIVIGQSE--------LASNSVKLRNVLTREEETISRDKL-LDTLQE 61
++Q D +I W + + L ++ T + S KL + ++Q
Sbjct: 174 YKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 62 KLKE 65
+L+
Sbjct: 233 ELRR 236
Score = 24.4 bits (52), Expect = 3.2
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
Query: 39 LRNVLTREE--------ETISR-DKLLDTLQEKLKE 65
+++L++EE + +S +L TL K +E
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide
degradation, glycoside hydrolase family 5, hydrolase,
glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB:
2ckr_A*
Length = 306
Score = 26.3 bits (58), Expect = 0.61
Identities = 2/15 (13%), Positives = 5/15 (33%)
Query: 11 DQLQYCEDNQIHWCI 25
+ + +I W
Sbjct: 250 RYIDLMAERKIGWTK 264
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 24.9 bits (54), Expect = 1.7
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 11 DQLQYCEDNQIHWCI 25
D L+ + I + +
Sbjct: 289 DLLEIFKTLNIGFAL 303
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 25.2 bits (55), Expect = 1.8
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 11 DQLQYCEDNQIHWCI 25
+ L+Y + I W
Sbjct: 271 EWLKYLDSKTISWVN 285
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics,
hypothetical cytosolic protein, PSI, protein structure
initiative; 1.83A {Bacillus subtilis subsp}
Length = 144
Score = 24.6 bits (53), Expect = 2.2
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 37 VKLRNVLTREEETISRDKLLDTLQEKLKE 65
+ R L ++ +L ++
Sbjct: 93 IAYRKTLVQQYLLADSGELYRLIKAHQTA 121
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 24.4 bits (53), Expect = 3.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 35 NSVKLRNVLTREEETISRDKLLDTLQEKLK 64
++V +R+ T E+ + D+L L+E+L+
Sbjct: 475 DTVTVRDRDTMEQIRLHVDELEGFLRERLR 504
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.363
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 878,435
Number of extensions: 35534
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 26
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)