RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14271
         (65 letters)



>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS),
           C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 113

 Score = 43.2 bits (101), Expect = 8e-08
 Identities = 12/51 (23%), Positives = 31/51 (60%)

Query: 15  YCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEKLKE 65
             +  +I + IV+G  E+ +N V +R   ++++ET+ +D+ +  L ++++ 
Sbjct: 59  EAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRL 109


>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
          C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 95

 Score = 41.1 bits (96), Expect = 3e-07
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 1  MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
                 K+  Q++  +     + IVIG  EL +N + ++N+ T E ETI  D L++  +
Sbjct: 35 DKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 94

Query: 61 E 61
          +
Sbjct: 95 K 95


>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
           mitochondrial polymerase gamma, C-terminal domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 127

 Score = 39.6 bits (92), Expect = 2e-06
 Identities = 11/63 (17%), Positives = 28/63 (44%)

Query: 3   YKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQEK 62
              +  L       ++  + + +++ ++ L +  ++LR+  T  +E +   KL D L + 
Sbjct: 51  ETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKY 110

Query: 63  LKE 65
           L  
Sbjct: 111 LAS 113


>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 37.7 bits (87), Expect = 1e-05
 Identities = 10/65 (15%), Positives = 35/65 (53%)

Query: 1   MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELASNSVKLRNVLTREEETISRDKLLDTLQ 60
            +  +N K+  +++     ++ + +V G  E+ S  V +R    ++  ++  +++++ LQ
Sbjct: 38  KADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQ 97

Query: 61  EKLKE 65
           ++++ 
Sbjct: 98  QEIRS 102


>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS),
           C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 111

 Score = 29.3 bits (65), Expect = 0.014
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 12  QLQYCEDNQIHWCIVIGQSEL---------ASNSVKLRNVLTREEETISRDKLLDTLQEK 62
             +  ++    + + +    +           ++V +R+  T E+  +  D+L   L+E+
Sbjct: 49  AYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRER 108

Query: 63  LK 64
           L+
Sbjct: 109 LR 110


>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi
           [TaxId: 556]}
          Length = 291

 Score = 23.6 bits (50), Expect = 2.4
 Identities = 3/14 (21%), Positives = 5/14 (35%)

Query: 11  DQLQYCEDNQIHWC 24
             + +  DN I   
Sbjct: 239 AWVTFMRDNNISNA 252


>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas
           haloplanktis [TaxId: 228]}
          Length = 293

 Score = 23.3 bits (49), Expect = 2.8
 Identities = 2/15 (13%), Positives = 5/15 (33%)

Query: 11  DQLQYCEDNQIHWCI 25
             + + + N I    
Sbjct: 241 AWMAFFKTNNISHAN 255


>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 130

 Score = 23.1 bits (49), Expect = 3.1
 Identities = 5/55 (9%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 1   MSYKKNPKLLDQLQYCEDNQIHWCIVIGQSELAS-----NSVKLRNVLTREEETI 50
            +++ +  +  +        + W   + ++           +K++NV+T +   +
Sbjct: 67  DAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDL 121


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 223,262
Number of extensions: 7056
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 10
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)