Query psy14272
Match_columns 194
No_of_seqs 237 out of 1115
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 15:38:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 99.3 1.2E-12 4.1E-17 123.6 5.3 52 29-80 2-53 (620)
2 3crv_A XPD/RAD3 related DNA he 99.1 4.8E-11 1.6E-15 110.1 6.3 45 29-73 2-46 (551)
3 2vl7_A XPD; helicase, unknown 99.1 7.4E-11 2.5E-15 108.9 5.4 47 27-73 4-50 (540)
4 3iuy_A Probable ATP-dependent 98.8 7.7E-09 2.6E-13 83.1 5.6 46 27-76 38-84 (228)
5 1vec_A ATP-dependent RNA helic 98.7 1.1E-08 3.8E-13 80.3 5.9 47 26-76 20-67 (206)
6 3fe2_A Probable ATP-dependent 98.7 1E-08 3.5E-13 83.6 5.8 47 26-76 46-93 (242)
7 3dkp_A Probable ATP-dependent 98.7 1.4E-08 4.8E-13 82.4 6.3 46 27-76 47-93 (245)
8 1wrb_A DJVLGB; RNA helicase, D 98.7 2.3E-08 7.9E-13 81.7 6.4 47 27-77 41-88 (253)
9 1qde_A EIF4A, translation init 98.7 1.5E-08 5.2E-13 80.7 5.1 48 26-77 31-79 (224)
10 2gxq_A Heat resistant RNA depe 98.7 2.4E-08 8.2E-13 78.3 5.7 46 27-76 19-65 (207)
11 2pl3_A Probable ATP-dependent 98.7 2.9E-08 1E-12 80.1 6.3 46 27-76 43-89 (236)
12 2oxc_A Probable ATP-dependent 98.6 3.1E-08 1E-12 80.2 5.8 46 27-76 42-88 (230)
13 3ber_A Probable ATP-dependent 98.6 3.8E-08 1.3E-12 81.5 6.4 48 27-78 61-109 (249)
14 1t6n_A Probable ATP-dependent 98.6 3.2E-08 1.1E-12 78.8 5.7 46 27-76 32-78 (220)
15 3ly5_A ATP-dependent RNA helic 98.6 3.8E-08 1.3E-12 82.0 6.0 46 27-76 72-118 (262)
16 1q0u_A Bstdead; DEAD protein, 98.6 2.2E-08 7.6E-13 80.1 4.3 46 27-76 22-68 (219)
17 3oiy_A Reverse gyrase helicase 98.6 2.6E-08 8.8E-13 86.5 4.6 47 26-76 17-63 (414)
18 2i4i_A ATP-dependent RNA helic 98.6 6.2E-08 2.1E-12 83.0 6.4 48 27-78 33-81 (417)
19 3bor_A Human initiation factor 98.6 2.7E-08 9.3E-13 81.0 3.8 46 27-76 48-94 (237)
20 3fmo_B ATP-dependent RNA helic 98.6 5E-08 1.7E-12 83.4 5.0 49 27-78 110-160 (300)
21 3tbk_A RIG-I helicase domain; 98.5 7.7E-08 2.6E-12 84.8 6.2 46 28-77 2-47 (555)
22 2db3_A ATP-dependent RNA helic 98.5 9.6E-08 3.3E-12 84.8 6.4 47 27-77 74-121 (434)
23 3b6e_A Interferon-induced heli 98.5 7.4E-08 2.5E-12 75.3 4.9 48 26-77 29-76 (216)
24 3i5x_A ATP-dependent RNA helic 98.5 6.6E-08 2.2E-12 87.4 5.0 49 27-78 90-140 (563)
25 3sqw_A ATP-dependent RNA helic 98.5 7.3E-08 2.5E-12 88.4 4.9 50 26-78 38-89 (579)
26 3fht_A ATP-dependent RNA helic 98.5 7.5E-08 2.6E-12 81.9 4.5 51 26-78 42-93 (412)
27 2j0s_A ATP-dependent RNA helic 98.5 8.5E-08 2.9E-12 82.4 4.7 45 27-75 55-100 (410)
28 2z0m_A 337AA long hypothetical 98.5 1.6E-07 5.4E-12 77.6 6.0 42 27-72 12-54 (337)
29 3pey_A ATP-dependent RNA helic 98.5 1.1E-07 3.7E-12 80.1 4.7 48 27-76 23-71 (395)
30 3eiq_A Eukaryotic initiation f 98.5 1.8E-07 6E-12 79.9 5.8 46 27-76 58-104 (414)
31 1xti_A Probable ATP-dependent 98.5 1.1E-07 3.9E-12 80.5 4.6 46 27-76 26-72 (391)
32 4a2p_A RIG-I, retinoic acid in 98.4 1.9E-07 6.4E-12 82.8 5.7 47 27-77 4-50 (556)
33 1s2m_A Putative ATP-dependent 98.4 1.8E-07 6.3E-12 79.8 5.4 46 27-76 39-85 (400)
34 1fuu_A Yeast initiation factor 98.4 9.9E-08 3.4E-12 80.7 3.4 46 27-76 39-85 (394)
35 1hv8_A Putative ATP-dependent 98.4 2.8E-07 9.7E-12 76.8 5.1 47 27-76 24-71 (367)
36 3fmp_B ATP-dependent RNA helic 98.4 1.3E-07 4.6E-12 83.9 3.0 50 27-78 110-160 (479)
37 2v1x_A ATP-dependent DNA helic 98.3 3E-07 1E-11 86.2 4.9 43 26-72 39-82 (591)
38 4gl2_A Interferon-induced heli 98.3 6.9E-07 2.4E-11 82.6 5.4 46 28-77 5-50 (699)
39 1gm5_A RECG; helicase, replica 98.3 1E-06 3.5E-11 85.8 6.8 52 26-77 364-417 (780)
40 1oyw_A RECQ helicase, ATP-depe 98.2 4.3E-07 1.5E-11 83.5 3.2 43 26-72 20-63 (523)
41 2ykg_A Probable ATP-dependent 98.2 1.2E-06 4.2E-11 80.9 6.1 48 26-77 8-56 (696)
42 3l9o_A ATP-dependent RNA helic 98.2 2.2E-06 7.6E-11 86.0 6.8 52 23-78 177-228 (1108)
43 2eyq_A TRCF, transcription-rep 98.2 2.3E-06 7.9E-11 86.1 6.8 52 26-77 599-652 (1151)
44 2xgj_A ATP-dependent RNA helic 98.1 2.8E-06 9.6E-11 84.6 7.2 50 24-77 80-129 (1010)
45 1wp9_A ATP-dependent RNA helic 98.1 9.9E-07 3.4E-11 74.9 3.2 42 29-75 8-49 (494)
46 4a4z_A Antiviral helicase SKI2 98.1 3.5E-06 1.2E-10 83.8 6.9 49 24-76 33-81 (997)
47 2fwr_A DNA repair protein RAD2 98.1 3.2E-06 1.1E-10 74.7 5.8 45 24-72 87-131 (472)
48 2oca_A DAR protein, ATP-depend 98.1 3.3E-06 1.1E-10 75.3 5.2 47 28-78 111-157 (510)
49 2fz4_A DNA repair protein RAD2 98.1 4.4E-06 1.5E-10 69.0 5.5 45 24-72 87-131 (237)
50 4a2q_A RIG-I, retinoic acid in 98.0 4.9E-06 1.7E-10 79.5 6.0 46 28-77 246-291 (797)
51 3h1t_A Type I site-specific re 98.0 8.7E-06 3E-10 74.5 6.7 47 29-75 177-224 (590)
52 4ddu_A Reverse gyrase; topoiso 98.0 5.2E-06 1.8E-10 83.4 5.5 47 26-76 74-120 (1104)
53 2va8_A SSO2462, SKI2-type heli 98.0 4.2E-06 1.4E-10 78.5 4.6 47 27-76 26-73 (715)
54 1rif_A DAR protein, DNA helica 98.0 1.1E-05 3.6E-10 67.2 6.0 44 29-76 112-155 (282)
55 2zj8_A DNA helicase, putative 97.9 4.1E-06 1.4E-10 78.9 3.5 48 27-77 19-67 (720)
56 3fho_A ATP-dependent RNA helic 97.9 1.5E-06 5.2E-11 78.8 0.3 47 28-77 138-186 (508)
57 3llm_A ATP-dependent RNA helic 97.9 1.1E-05 3.6E-10 65.8 4.6 46 28-77 59-104 (235)
58 2p6r_A Afuhel308 helicase; pro 97.8 4.3E-06 1.5E-10 78.5 1.9 46 27-76 21-67 (702)
59 4a2w_A RIG-I, retinoic acid in 97.8 1.1E-05 3.7E-10 79.2 4.7 46 28-77 246-291 (936)
60 1gku_B Reverse gyrase, TOP-RG; 97.8 1.5E-05 5E-10 79.5 5.3 46 27-78 54-99 (1054)
61 1tf5_A Preprotein translocase 97.7 2.4E-05 8.3E-10 77.3 5.4 41 27-73 80-120 (844)
62 4f92_B U5 small nuclear ribonu 97.6 9.6E-05 3.3E-09 77.4 8.0 49 26-77 73-123 (1724)
63 4f92_B U5 small nuclear ribonu 97.6 7.4E-05 2.5E-09 78.3 6.7 47 28-77 923-970 (1724)
64 1z63_A Helicase of the SNF2/RA 97.5 0.00022 7.6E-09 63.3 7.8 48 26-73 33-80 (500)
65 1nkt_A Preprotein translocase 97.5 8.6E-05 2.9E-09 74.0 5.0 41 27-73 108-148 (922)
66 2fsf_A Preprotein translocase 97.5 0.0001 3.5E-09 73.0 5.5 41 27-73 71-111 (853)
67 2z83_A Helicase/nucleoside tri 97.5 3E-05 1E-09 69.9 1.5 35 44-78 16-50 (459)
68 2wv9_A Flavivirin protease NS2 97.4 8.5E-06 2.9E-10 77.9 -3.0 49 30-78 215-270 (673)
69 1yks_A Genome polyprotein [con 97.4 4.8E-05 1.6E-09 68.3 1.8 34 45-78 4-37 (440)
70 2w00_A HSDR, R.ECOR124I; ATP-b 97.2 0.00019 6.7E-09 72.0 4.7 46 30-76 271-326 (1038)
71 2ipc_A Preprotein translocase 97.2 0.00023 7.9E-09 71.4 5.0 40 27-72 76-115 (997)
72 2jlq_A Serine protease subunit 97.2 9.5E-05 3.2E-09 66.3 1.6 33 46-78 16-48 (451)
73 2v6i_A RNA helicase; membrane, 97.1 0.00018 6E-09 64.3 2.6 30 49-78 2-31 (431)
74 3upu_A ATP-dependent DNA helic 97.0 0.0011 3.6E-08 59.6 6.9 55 24-79 18-74 (459)
75 2whx_A Serine protease/ntpase/ 97.0 0.00019 6.4E-09 67.8 1.8 44 31-78 172-215 (618)
76 3mwy_W Chromo domain-containin 96.7 0.0032 1.1E-07 60.5 7.2 46 28-73 234-279 (800)
77 3dmq_A RNA polymerase-associat 96.5 0.0033 1.1E-07 62.0 6.2 49 26-76 149-197 (968)
78 2xau_A PRE-mRNA-splicing facto 96.5 0.0013 4.5E-08 63.6 3.2 36 31-71 94-129 (773)
79 1z3i_X Similar to RAD54-like; 96.4 0.003 1E-07 59.3 5.0 48 29-76 54-106 (644)
80 4b3f_X DNA-binding protein smu 96.0 0.0068 2.3E-07 56.7 5.5 46 31-80 190-235 (646)
81 3rc3_A ATP-dependent RNA helic 96.0 0.0022 7.6E-08 61.5 2.2 17 48-64 154-170 (677)
82 3jux_A Protein translocase sub 95.4 0.015 5.2E-07 57.5 5.3 44 26-75 71-114 (822)
83 3o8b_A HCV NS3 protease/helica 95.3 0.0056 1.9E-07 59.0 2.0 31 42-72 225-255 (666)
84 1w36_D RECD, exodeoxyribonucle 95.2 0.013 4.6E-07 54.8 4.3 37 32-72 151-189 (608)
85 1jbk_A CLPB protein; beta barr 95.2 0.016 5.5E-07 42.9 3.8 37 29-65 21-59 (195)
86 2w58_A DNAI, primosome compone 95.2 0.025 8.6E-07 44.0 5.0 33 33-65 32-70 (202)
87 3n70_A Transport activator; si 95.1 0.018 6.2E-07 43.3 3.9 27 39-65 14-40 (145)
88 1njg_A DNA polymerase III subu 95.0 0.01 3.5E-07 45.3 2.2 33 33-65 26-61 (250)
89 3ec2_A DNA replication protein 94.9 0.045 1.5E-06 42.0 5.8 34 32-65 16-54 (180)
90 2r44_A Uncharacterized protein 94.9 0.0088 3E-07 50.4 1.8 34 32-65 29-62 (331)
91 1a5t_A Delta prime, HOLB; zinc 94.9 0.026 9E-07 48.3 4.7 39 31-69 3-44 (334)
92 3co5_A Putative two-component 94.8 0.02 6.8E-07 43.1 3.5 28 38-65 16-43 (143)
93 2p65_A Hypothetical protein PF 94.7 0.021 7.3E-07 42.5 3.2 37 29-65 21-59 (187)
94 3uk6_A RUVB-like 2; hexameric 94.7 0.066 2.2E-06 45.2 6.6 36 31-66 48-87 (368)
95 2chg_A Replication factor C sm 94.6 0.018 6E-07 43.7 2.7 32 34-65 21-54 (226)
96 1iqp_A RFCS; clamp loader, ext 94.3 0.033 1.1E-06 45.7 3.9 38 29-66 24-63 (327)
97 1ofh_A ATP-dependent HSL prote 94.2 0.024 8.4E-07 46.2 2.9 17 49-65 50-66 (310)
98 1hqc_A RUVB; extended AAA-ATPa 94.2 0.037 1.3E-06 45.8 4.0 32 34-65 16-54 (324)
99 3hws_A ATP-dependent CLP prote 94.1 0.027 9.4E-07 48.3 3.2 32 34-65 19-67 (363)
100 1sxj_D Activator 1 41 kDa subu 94.1 0.019 6.4E-07 47.9 2.0 35 32-66 39-75 (353)
101 1sxj_C Activator 1 40 kDa subu 94.0 0.047 1.6E-06 46.4 4.4 35 34-68 29-65 (340)
102 2chq_A Replication factor C sm 93.8 0.027 9.2E-07 46.1 2.4 34 33-66 20-55 (319)
103 4fcw_A Chaperone protein CLPB; 93.8 0.026 9E-07 46.4 2.3 33 34-66 21-64 (311)
104 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.029 1E-06 51.9 2.7 33 33-65 25-57 (500)
105 2bjv_A PSP operon transcriptio 93.6 0.064 2.2E-06 43.6 4.3 29 37-65 17-45 (265)
106 2qgz_A Helicase loader, putati 93.6 0.1 3.5E-06 44.6 5.7 32 34-65 132-168 (308)
107 1g8p_A Magnesium-chelatase 38 93.6 0.025 8.5E-07 47.3 1.8 39 27-65 21-61 (350)
108 2gk6_A Regulator of nonsense t 93.5 0.061 2.1E-06 50.3 4.4 40 31-75 181-220 (624)
109 2qen_A Walker-type ATPase; unk 93.4 0.075 2.6E-06 43.7 4.5 34 29-65 14-47 (350)
110 3h4m_A Proteasome-activating n 93.2 0.034 1.2E-06 45.4 2.1 17 49-65 51-67 (285)
111 3bos_A Putative DNA replicatio 93.2 0.079 2.7E-06 41.1 4.1 31 35-65 36-68 (242)
112 3e1s_A Exodeoxyribonuclease V, 93.1 0.1 3.4E-06 48.8 5.3 47 28-79 187-233 (574)
113 1jr3_A DNA polymerase III subu 92.9 0.082 2.8E-06 44.4 4.0 36 31-66 17-55 (373)
114 3pfi_A Holliday junction ATP-d 92.9 0.036 1.2E-06 46.5 1.7 34 32-65 31-71 (338)
115 2v1u_A Cell division control p 92.9 0.057 2E-06 45.1 2.9 33 33-65 22-60 (387)
116 3te6_A Regulatory protein SIR3 92.8 0.067 2.3E-06 46.9 3.4 30 38-67 32-63 (318)
117 1p9r_A General secretion pathw 92.4 0.093 3.2E-06 47.4 3.9 40 34-76 154-193 (418)
118 1ojl_A Transcriptional regulat 91.8 0.11 3.8E-06 44.1 3.5 27 39-65 15-41 (304)
119 3b9p_A CG5977-PA, isoform A; A 91.7 0.089 3E-06 43.3 2.7 18 49-66 54-71 (297)
120 2qz4_A Paraplegin; AAA+, SPG7, 91.6 0.22 7.6E-06 39.6 4.9 34 32-65 11-55 (262)
121 2eyu_A Twitching motility prot 91.6 0.13 4.4E-06 43.2 3.6 24 39-64 17-40 (261)
122 2r62_A Cell division protease 91.6 0.097 3.3E-06 42.4 2.7 16 50-65 45-60 (268)
123 3pvs_A Replication-associated 91.4 0.097 3.3E-06 47.4 2.8 37 29-65 25-66 (447)
124 2wjy_A Regulator of nonsense t 91.3 0.18 6.3E-06 49.1 4.9 41 31-76 357-397 (800)
125 2gza_A Type IV secretion syste 91.3 0.15 5.2E-06 44.5 3.9 25 40-64 166-190 (361)
126 1c4o_A DNA nucleotide excision 91.3 0.21 7.2E-06 47.3 5.1 41 27-67 5-46 (664)
127 2xzl_A ATP-dependent helicase 91.2 0.16 5.5E-06 49.5 4.3 40 31-75 361-400 (802)
128 1sxj_B Activator 1 37 kDa subu 91.0 0.13 4.3E-06 42.1 2.9 33 34-66 25-59 (323)
129 3u61_B DNA polymerase accessor 91.0 0.17 5.8E-06 42.2 3.7 38 30-67 26-66 (324)
130 3syl_A Protein CBBX; photosynt 90.9 0.16 5.4E-06 41.8 3.4 17 50-66 68-84 (309)
131 1fnn_A CDC6P, cell division co 90.7 0.18 6.1E-06 42.3 3.6 16 51-66 46-61 (389)
132 3vfd_A Spastin; ATPase, microt 90.7 0.13 4.3E-06 44.8 2.7 37 29-65 114-164 (389)
133 1lv7_A FTSH; alpha/beta domain 90.6 0.24 8.2E-06 39.9 4.2 34 32-65 17-61 (257)
134 1l8q_A Chromosomal replication 90.6 0.28 9.4E-06 41.1 4.7 29 37-65 21-53 (324)
135 2qby_B CDC6 homolog 3, cell di 90.4 0.17 5.9E-06 42.5 3.3 18 49-66 45-62 (384)
136 3pxg_A Negative regulator of g 90.4 0.18 6.2E-06 45.4 3.6 38 29-66 179-218 (468)
137 3k1j_A LON protease, ATP-depen 90.1 0.25 8.4E-06 46.0 4.3 34 33-66 44-77 (604)
138 2d7d_A Uvrabc system protein B 90.0 0.31 1E-05 46.2 5.0 44 23-66 5-49 (661)
139 2b8t_A Thymidine kinase; deoxy 90.0 0.2 6.7E-06 41.7 3.2 30 46-75 9-38 (223)
140 2oap_1 GSPE-2, type II secreti 90.0 0.22 7.4E-06 46.1 3.8 36 38-74 249-284 (511)
141 3jvv_A Twitching mobility prot 89.8 0.29 9.8E-06 43.2 4.4 30 46-76 120-149 (356)
142 3pxi_A Negative regulator of g 89.8 0.15 5.1E-06 48.4 2.7 32 34-65 495-537 (758)
143 1ry6_A Internal kinesin; kines 89.8 0.16 5.6E-06 45.3 2.7 43 25-67 52-103 (360)
144 2c9o_A RUVB-like 1; hexameric 89.7 0.42 1.4E-05 42.7 5.4 32 35-66 45-80 (456)
145 3pxi_A Negative regulator of g 89.7 0.19 6.4E-06 47.7 3.2 37 29-65 179-217 (758)
146 2pt7_A CAG-ALFA; ATPase, prote 89.7 0.18 6.3E-06 43.6 3.0 28 37-64 159-186 (330)
147 3cf0_A Transitional endoplasmi 89.6 0.23 8E-06 41.6 3.4 17 49-65 49-65 (301)
148 3tr0_A Guanylate kinase, GMP k 89.5 0.12 4.1E-06 39.8 1.4 19 46-64 4-22 (205)
149 1um8_A ATP-dependent CLP prote 89.5 0.27 9.4E-06 42.2 3.9 17 49-65 72-88 (376)
150 1sxj_A Activator 1 95 kDa subu 89.1 0.27 9.3E-06 44.7 3.8 33 34-66 43-94 (516)
151 3d8b_A Fidgetin-like protein 1 89.1 0.23 8E-06 42.8 3.1 17 49-65 117-133 (357)
152 3eie_A Vacuolar protein sortin 89.0 0.21 7E-06 42.3 2.7 38 29-66 17-68 (322)
153 3vkg_A Dynein heavy chain, cyt 88.9 0.52 1.8E-05 52.7 6.3 37 29-65 1284-1320(3245)
154 2j41_A Guanylate kinase; GMP, 88.8 0.14 4.9E-06 39.3 1.5 19 46-64 3-21 (207)
155 2qby_A CDC6 homolog 1, cell di 88.8 0.23 7.9E-06 41.2 2.8 31 35-65 25-61 (386)
156 4akg_A Glutathione S-transfera 88.6 0.55 1.9E-05 51.7 6.2 37 29-65 1247-1283(2695)
157 1tue_A Replication protein E1; 88.6 0.39 1.3E-05 40.4 4.1 30 37-66 43-75 (212)
158 3lfu_A DNA helicase II; SF1 he 88.5 0.34 1.2E-05 44.2 4.0 39 31-75 10-48 (647)
159 1in4_A RUVB, holliday junction 88.4 0.3 1E-05 41.6 3.4 32 34-65 29-67 (334)
160 1r6b_X CLPA protein; AAA+, N-t 88.1 0.18 6.2E-06 47.6 2.0 32 34-65 462-504 (758)
161 1u0j_A DNA replication protein 88.1 0.55 1.9E-05 40.4 4.8 31 37-67 88-122 (267)
162 1kgd_A CASK, peripheral plasma 88.1 0.19 6.3E-06 38.9 1.7 17 48-64 4-20 (180)
163 1qvr_A CLPB protein; coiled co 87.9 0.17 5.7E-06 49.0 1.6 32 34-65 562-604 (854)
164 2ewv_A Twitching motility prot 87.8 0.28 9.6E-06 43.2 2.9 30 46-76 133-162 (372)
165 3tau_A Guanylate kinase, GMP k 87.8 0.19 6.6E-06 39.8 1.7 17 48-64 7-23 (208)
166 2bwj_A Adenylate kinase 5; pho 87.8 0.18 6.1E-06 38.5 1.4 20 45-64 8-27 (199)
167 2gno_A DNA polymerase III, gam 87.8 0.36 1.2E-05 41.4 3.4 35 34-68 1-37 (305)
168 2w0m_A SSO2452; RECA, SSPF, un 87.4 0.36 1.2E-05 37.2 2.9 24 45-68 19-42 (235)
169 2fna_A Conserved hypothetical 87.3 0.48 1.7E-05 38.8 3.8 32 29-65 15-46 (357)
170 2zts_A Putative uncharacterize 87.3 0.32 1.1E-05 38.2 2.6 30 47-76 28-57 (251)
171 2kjq_A DNAA-related protein; s 87.2 0.21 7.1E-06 38.2 1.5 17 48-64 35-51 (149)
172 3dc4_A Kinesin-like protein NO 87.1 0.26 8.9E-06 43.7 2.3 45 22-66 60-112 (344)
173 2dr3_A UPF0273 protein PH0284; 87.1 0.32 1.1E-05 38.1 2.6 29 46-74 20-48 (247)
174 2qmh_A HPR kinase/phosphorylas 87.0 0.3 1E-05 40.9 2.4 15 49-63 34-48 (205)
175 1d2n_A N-ethylmaleimide-sensit 86.6 0.34 1.2E-05 39.5 2.5 16 50-65 65-80 (272)
176 4akg_A Glutathione S-transfera 86.5 0.61 2.1E-05 51.4 5.1 39 28-66 902-940 (2695)
177 1t5c_A CENP-E protein, centrom 86.5 0.58 2E-05 41.5 4.1 43 24-66 45-95 (349)
178 3lw7_A Adenylate kinase relate 86.4 0.24 8.4E-06 36.2 1.4 20 50-71 2-21 (179)
179 1ixz_A ATP-dependent metallopr 85.9 1.7 5.8E-05 34.8 6.3 34 31-64 20-64 (254)
180 1uaa_A REP helicase, protein ( 85.8 0.66 2.2E-05 43.2 4.3 40 31-76 3-42 (673)
181 3cpe_A Terminase, DNA packagin 85.8 0.86 2.9E-05 42.3 5.1 44 27-74 160-203 (592)
182 3vaa_A Shikimate kinase, SK; s 85.7 0.3 1E-05 38.2 1.7 19 46-64 22-40 (199)
183 1sxj_E Activator 1 40 kDa subu 85.6 0.29 9.8E-06 41.0 1.6 33 34-66 18-53 (354)
184 2qp9_X Vacuolar protein sortin 85.5 0.36 1.2E-05 41.7 2.3 17 50-66 85-101 (355)
185 1lvg_A Guanylate kinase, GMP k 85.5 0.3 1E-05 38.6 1.6 17 48-64 3-19 (198)
186 1kht_A Adenylate kinase; phosp 85.5 0.3 1E-05 36.8 1.6 16 49-64 3-18 (192)
187 2c95_A Adenylate kinase 1; tra 85.4 0.38 1.3E-05 36.5 2.1 19 46-64 6-24 (196)
188 1xwi_A SKD1 protein; VPS4B, AA 85.3 0.58 2E-05 39.9 3.4 16 50-65 46-61 (322)
189 1e9r_A Conjugal transfer prote 85.1 0.4 1.4E-05 42.0 2.4 18 49-66 53-70 (437)
190 3lnc_A Guanylate kinase, GMP k 85.1 0.23 8E-06 39.6 0.8 19 47-65 25-43 (231)
191 2qor_A Guanylate kinase; phosp 85.0 0.28 9.7E-06 38.4 1.2 19 46-64 9-27 (204)
192 4etp_A Kinesin-like protein KA 84.6 0.4 1.4E-05 43.3 2.2 39 29-67 116-159 (403)
193 2v54_A DTMP kinase, thymidylat 84.5 0.29 1E-05 37.5 1.1 17 48-64 3-19 (204)
194 1z6g_A Guanylate kinase; struc 84.4 0.39 1.3E-05 38.5 1.8 23 42-64 16-38 (218)
195 2zan_A Vacuolar protein sortin 84.4 0.56 1.9E-05 41.9 3.0 33 33-65 137-183 (444)
196 1n0w_A DNA repair protein RAD5 84.4 0.45 1.5E-05 37.3 2.1 26 46-71 21-46 (243)
197 2ehv_A Hypothetical protein PH 84.4 0.57 1.9E-05 36.8 2.7 24 45-68 26-49 (251)
198 1f9v_A Kinesin-like protein KA 84.2 0.47 1.6E-05 42.0 2.4 39 29-67 60-103 (347)
199 3trf_A Shikimate kinase, SK; a 84.1 0.39 1.3E-05 36.5 1.6 16 49-64 5-20 (185)
200 1zp6_A Hypothetical protein AT 84.0 0.24 8.2E-06 37.7 0.4 19 46-64 6-24 (191)
201 1gvn_B Zeta; postsegregational 83.9 0.7 2.4E-05 39.0 3.3 37 28-64 6-48 (287)
202 1znw_A Guanylate kinase, GMP k 83.8 0.41 1.4E-05 37.7 1.7 20 45-64 16-35 (207)
203 2rep_A Kinesin-like protein KI 83.8 0.45 1.5E-05 42.7 2.2 43 25-67 85-134 (376)
204 3cob_A Kinesin heavy chain-lik 83.7 0.32 1.1E-05 43.6 1.2 38 29-66 55-97 (369)
205 1r6b_X CLPA protein; AAA+, N-t 83.6 0.75 2.6E-05 43.4 3.7 37 29-65 185-223 (758)
206 4tmk_A Protein (thymidylate ki 83.5 0.79 2.7E-05 37.4 3.4 30 48-78 2-31 (213)
207 2cvh_A DNA repair and recombin 83.5 0.58 2E-05 36.0 2.5 21 46-66 17-37 (220)
208 1xx6_A Thymidine kinase; NESG, 83.5 0.75 2.6E-05 37.0 3.2 28 47-74 6-33 (191)
209 1cr0_A DNA primase/helicase; R 83.4 0.48 1.7E-05 39.1 2.1 36 39-74 25-60 (296)
210 3a00_A Guanylate kinase, GMP k 83.4 0.45 1.5E-05 36.8 1.8 16 49-64 1-16 (186)
211 3ney_A 55 kDa erythrocyte memb 83.4 0.43 1.5E-05 39.0 1.7 17 48-64 18-34 (197)
212 3cm0_A Adenylate kinase; ATP-b 83.4 0.31 1.1E-05 36.9 0.8 17 48-64 3-19 (186)
213 1qvr_A CLPB protein; coiled co 83.3 0.72 2.5E-05 44.5 3.5 37 29-65 169-207 (854)
214 3kb2_A SPBC2 prophage-derived 83.2 0.42 1.4E-05 35.3 1.5 14 51-64 3-16 (173)
215 3hu3_A Transitional endoplasmi 83.1 0.37 1.3E-05 44.2 1.3 16 50-65 239-254 (489)
216 3f9v_A Minichromosome maintena 83.0 0.32 1.1E-05 45.6 0.9 15 51-65 329-343 (595)
217 3t0q_A AGR253WP; kinesin, alph 83.0 0.47 1.6E-05 42.0 1.9 38 29-66 61-103 (349)
218 2orw_A Thymidine kinase; TMTK, 82.9 0.86 2.9E-05 35.9 3.3 27 48-74 2-28 (184)
219 3a8t_A Adenylate isopentenyltr 82.9 0.37 1.3E-05 42.9 1.2 16 49-64 40-55 (339)
220 4gp7_A Metallophosphoesterase; 82.9 0.3 1E-05 37.6 0.5 19 47-65 7-25 (171)
221 3t15_A Ribulose bisphosphate c 82.9 0.57 2E-05 39.3 2.3 16 50-65 37-52 (293)
222 4a14_A Kinesin, kinesin-like p 82.7 0.59 2E-05 41.2 2.4 38 29-66 58-101 (344)
223 3u4q_A ATP-dependent helicase/ 82.7 1 3.5E-05 45.5 4.4 40 31-76 11-50 (1232)
224 4edh_A DTMP kinase, thymidylat 82.5 0.77 2.6E-05 37.3 2.9 29 48-77 5-33 (213)
225 1kag_A SKI, shikimate kinase I 82.3 0.55 1.9E-05 35.1 1.8 17 48-64 3-19 (173)
226 3iij_A Coilin-interacting nucl 82.2 0.48 1.6E-05 36.0 1.5 17 48-64 10-26 (180)
227 2o0j_A Terminase, DNA packagin 81.9 1.6 5.3E-05 39.2 4.9 42 27-72 160-201 (385)
228 3exa_A TRNA delta(2)-isopenten 81.9 0.44 1.5E-05 42.3 1.3 16 49-64 3-18 (322)
229 2plr_A DTMP kinase, probable t 81.8 0.47 1.6E-05 36.3 1.3 17 48-64 3-19 (213)
230 3kta_A Chromosome segregation 81.8 0.82 2.8E-05 34.6 2.6 24 50-75 27-50 (182)
231 1goj_A Kinesin, kinesin heavy 81.7 0.56 1.9E-05 41.7 1.9 43 25-67 49-99 (355)
232 1w5s_A Origin recognition comp 81.7 1.5 5.1E-05 37.0 4.5 35 31-65 26-68 (412)
233 1xjc_A MOBB protein homolog; s 81.5 0.97 3.3E-05 36.0 3.1 28 50-78 5-32 (169)
234 2h58_A Kinesin-like protein KI 81.4 0.33 1.1E-05 42.7 0.3 38 29-66 56-98 (330)
235 2rhm_A Putative kinase; P-loop 81.4 0.36 1.2E-05 36.6 0.5 17 48-64 4-20 (193)
236 1ly1_A Polynucleotide kinase; 81.3 0.52 1.8E-05 35.1 1.3 15 50-64 3-17 (181)
237 1qhx_A CPT, protein (chloramph 81.2 0.58 2E-05 35.1 1.6 16 49-64 3-18 (178)
238 2px0_A Flagellar biosynthesis 81.2 0.91 3.1E-05 38.7 3.0 22 49-70 105-126 (296)
239 1s96_A Guanylate kinase, GMP k 81.2 0.57 2E-05 38.2 1.7 20 45-64 12-31 (219)
240 3auy_A DNA double-strand break 81.1 0.74 2.5E-05 39.9 2.4 23 50-74 26-48 (371)
241 3lre_A Kinesin-like protein KI 80.9 0.64 2.2E-05 41.3 2.0 38 29-66 80-123 (355)
242 1pjr_A PCRA; DNA repair, DNA r 80.8 1.3 4.5E-05 42.0 4.2 39 31-75 12-50 (724)
243 1np6_A Molybdopterin-guanine d 80.8 1 3.6E-05 35.6 3.0 26 50-76 7-32 (174)
244 3vkg_A Dynein heavy chain, cyt 80.8 1.5 5.3E-05 49.1 5.2 47 27-73 884-932 (3245)
245 1iy2_A ATP-dependent metallopr 80.7 2.6 8.7E-05 34.5 5.5 35 31-65 44-89 (278)
246 2y65_A Kinesin, kinesin heavy 80.4 0.82 2.8E-05 40.8 2.5 45 22-66 50-102 (365)
247 1x88_A Kinesin-like protein KI 80.3 0.63 2.2E-05 41.4 1.8 39 29-67 63-107 (359)
248 1nks_A Adenylate kinase; therm 80.1 0.47 1.6E-05 35.6 0.8 14 51-64 3-16 (194)
249 1zd8_A GTP:AMP phosphotransfer 80.1 0.58 2E-05 37.1 1.3 17 48-64 6-22 (227)
250 1bg2_A Kinesin; motor protein, 80.1 0.76 2.6E-05 40.3 2.2 45 23-67 44-96 (325)
251 1tev_A UMP-CMP kinase; ploop, 80.0 0.58 2E-05 35.2 1.2 16 49-64 3-18 (196)
252 4b4t_M 26S protease regulatory 80.0 0.85 2.9E-05 41.6 2.6 16 50-65 216-231 (434)
253 2jaq_A Deoxyguanosine kinase; 80.0 0.63 2.1E-05 35.4 1.4 14 51-64 2-15 (205)
254 4a74_A DNA repair and recombin 79.9 0.63 2.2E-05 36.0 1.4 24 45-68 21-44 (231)
255 1zak_A Adenylate kinase; ATP:A 79.9 0.59 2E-05 36.9 1.3 17 48-64 4-20 (222)
256 1f2t_A RAD50 ABC-ATPase; DNA d 79.8 1.1 3.8E-05 34.1 2.8 24 50-75 24-47 (149)
257 1nn5_A Similar to deoxythymidy 79.6 0.6 2E-05 36.0 1.2 17 48-64 8-24 (215)
258 4eun_A Thermoresistant glucoki 79.6 0.72 2.4E-05 35.9 1.7 18 47-64 27-44 (200)
259 3c8u_A Fructokinase; YP_612366 79.5 0.98 3.4E-05 35.5 2.5 27 37-63 6-36 (208)
260 2r6a_A DNAB helicase, replicat 79.5 0.89 3E-05 40.6 2.5 36 41-76 195-230 (454)
261 3tlx_A Adenylate kinase 2; str 79.5 1 3.6E-05 36.6 2.7 17 48-64 28-44 (243)
262 3bh0_A DNAB-like replicative h 79.5 1 3.5E-05 38.3 2.7 35 41-75 60-94 (315)
263 3qks_A DNA double-strand break 79.4 1 3.5E-05 35.8 2.6 26 50-77 24-49 (203)
264 1rz3_A Hypothetical protein rb 79.3 1.2 4.2E-05 34.8 3.0 27 38-64 6-37 (201)
265 3bfn_A Kinesin-like protein KI 79.3 0.64 2.2E-05 42.0 1.5 38 29-66 73-116 (388)
266 2yvu_A Probable adenylyl-sulfa 79.3 0.51 1.8E-05 36.1 0.7 17 48-64 12-28 (186)
267 1v8k_A Kinesin-like protein KI 79.3 0.85 2.9E-05 41.5 2.3 39 29-67 129-173 (410)
268 3b85_A Phosphate starvation-in 79.2 1.7 5.7E-05 35.1 3.8 21 44-64 17-37 (208)
269 2ze6_A Isopentenyl transferase 79.2 0.58 2E-05 38.5 1.1 14 51-64 3-16 (253)
270 2wwf_A Thymidilate kinase, put 79.1 0.68 2.3E-05 35.7 1.4 17 48-64 9-25 (212)
271 2vp4_A Deoxynucleoside kinase; 79.1 0.65 2.2E-05 37.3 1.3 17 48-64 19-35 (230)
272 2ius_A DNA translocase FTSK; n 79.1 1.3 4.5E-05 41.2 3.6 28 49-76 167-194 (512)
273 4b4t_L 26S protease subunit RP 78.9 0.97 3.3E-05 41.3 2.6 34 32-65 186-231 (437)
274 1nlf_A Regulatory protein REPA 78.9 1 3.5E-05 37.0 2.5 25 46-70 27-51 (279)
275 2z4s_A Chromosomal replication 78.8 2.2 7.6E-05 38.0 4.9 27 39-65 117-146 (440)
276 1m7g_A Adenylylsulfate kinase; 78.8 0.64 2.2E-05 36.5 1.2 32 28-64 9-40 (211)
277 2vvg_A Kinesin-2; motor protei 78.7 0.88 3E-05 40.4 2.2 43 24-66 57-107 (350)
278 3v9p_A DTMP kinase, thymidylat 78.6 0.66 2.3E-05 38.4 1.3 29 47-76 23-51 (227)
279 3lv8_A DTMP kinase, thymidylat 78.6 1.5 5E-05 36.5 3.4 29 48-77 26-54 (236)
280 2v9p_A Replication protein E1; 78.5 0.97 3.3E-05 39.2 2.3 28 37-64 114-141 (305)
281 1g41_A Heat shock protein HSLU 78.3 1.4 4.9E-05 40.3 3.5 16 50-65 51-66 (444)
282 4b4t_K 26S protease regulatory 78.1 1.1 3.6E-05 40.9 2.5 21 50-72 207-227 (428)
283 3foz_A TRNA delta(2)-isopenten 78.1 0.67 2.3E-05 41.0 1.2 15 50-64 11-25 (316)
284 2z0h_A DTMP kinase, thymidylat 78.0 0.76 2.6E-05 34.9 1.3 14 51-64 2-15 (197)
285 2r2a_A Uncharacterized protein 77.8 1.3 4.6E-05 35.7 2.8 23 50-72 6-28 (199)
286 3nwj_A ATSK2; P loop, shikimat 77.6 0.92 3.1E-05 37.9 1.9 29 36-64 32-63 (250)
287 2wbe_C Bipolar kinesin KRP-130 77.4 0.91 3.1E-05 40.6 1.9 44 24-67 68-119 (373)
288 3b6u_A Kinesin-like protein KI 77.4 0.91 3.1E-05 40.7 1.9 44 24-67 69-120 (372)
289 2pez_A Bifunctional 3'-phospho 77.3 0.81 2.8E-05 34.7 1.3 17 48-64 4-20 (179)
290 4b4t_J 26S protease regulatory 77.2 1.2 4E-05 40.6 2.5 34 32-65 153-198 (405)
291 1knq_A Gluconate kinase; ALFA/ 77.2 0.8 2.7E-05 34.4 1.3 17 48-64 7-23 (175)
292 2q6t_A DNAB replication FORK h 77.2 0.99 3.4E-05 40.2 2.0 36 41-76 192-227 (444)
293 3t61_A Gluconokinase; PSI-biol 77.1 0.92 3.1E-05 35.1 1.6 15 50-64 19-33 (202)
294 3u06_A Protein claret segregat 77.0 0.62 2.1E-05 42.3 0.7 42 25-66 108-156 (412)
295 4h1g_A Maltose binding protein 76.9 0.88 3E-05 43.3 1.7 38 29-66 438-480 (715)
296 1aky_A Adenylate kinase; ATP:A 76.8 0.97 3.3E-05 35.5 1.7 16 49-64 4-19 (220)
297 2ce7_A Cell division protein F 76.8 2.6 9E-05 38.6 4.8 16 50-65 50-65 (476)
298 2qm8_A GTPase/ATPase; G protei 76.6 1.4 4.7E-05 38.1 2.8 37 38-75 44-80 (337)
299 4eaq_A DTMP kinase, thymidylat 76.4 0.85 2.9E-05 37.1 1.3 17 48-64 25-41 (229)
300 1e6c_A Shikimate kinase; phosp 76.2 1 3.5E-05 33.5 1.6 15 50-64 3-17 (173)
301 2bdt_A BH3686; alpha-beta prot 76.1 0.72 2.5E-05 35.2 0.7 16 49-64 2-17 (189)
302 2heh_A KIF2C protein; kinesin, 76.1 1.3 4.3E-05 40.1 2.4 40 29-68 109-154 (387)
303 2pbr_A DTMP kinase, thymidylat 75.9 0.99 3.4E-05 34.0 1.4 14 51-64 2-15 (195)
304 1e69_A Chromosome segregation 75.8 1.2 4.1E-05 37.8 2.1 24 50-75 25-48 (322)
305 1qf9_A UMP/CMP kinase, protein 75.7 0.86 3E-05 34.1 1.1 15 50-64 7-21 (194)
306 2wsm_A Hydrogenase expression/ 75.4 3 0.0001 32.2 4.1 41 33-74 12-54 (221)
307 1ex7_A Guanylate kinase; subst 75.4 1.1 3.6E-05 36.1 1.6 15 50-64 2-16 (186)
308 2cdn_A Adenylate kinase; phosp 75.2 1.1 3.8E-05 34.6 1.6 15 50-64 21-35 (201)
309 1y63_A LMAJ004144AAA protein; 75.1 1.2 3.9E-05 34.4 1.7 17 48-64 9-25 (184)
310 1gtv_A TMK, thymidylate kinase 75.0 0.42 1.5E-05 36.9 -0.9 14 51-64 2-15 (214)
311 1ukz_A Uridylate kinase; trans 74.9 1 3.5E-05 34.7 1.3 15 50-64 16-30 (203)
312 3uie_A Adenylyl-sulfate kinase 74.9 1.4 4.9E-05 34.2 2.2 18 47-64 23-40 (200)
313 3gbj_A KIF13B protein; kinesin 74.8 1.1 3.9E-05 39.6 1.8 37 30-66 68-110 (354)
314 4b4t_H 26S protease regulatory 74.7 1.4 4.8E-05 40.9 2.4 16 50-65 244-259 (467)
315 3tmk_A Thymidylate kinase; pho 74.7 1 3.6E-05 36.9 1.4 27 48-75 4-30 (216)
316 3ld9_A DTMP kinase, thymidylat 74.6 2.4 8.3E-05 35.0 3.6 28 48-76 20-47 (223)
317 2vli_A Antibiotic resistance p 74.4 0.95 3.3E-05 34.0 1.0 16 49-64 5-20 (183)
318 2x8a_A Nuclear valosin-contain 74.4 1.3 4.4E-05 37.0 1.9 14 52-65 47-60 (274)
319 3a4m_A L-seryl-tRNA(SEC) kinas 74.4 1 3.5E-05 36.9 1.3 16 49-64 4-19 (260)
320 4ag6_A VIRB4 ATPase, type IV s 74.3 2.3 7.9E-05 36.7 3.6 22 48-69 34-55 (392)
321 1svm_A Large T antigen; AAA+ f 74.3 1.4 4.8E-05 39.2 2.2 20 45-64 165-184 (377)
322 2bbw_A Adenylate kinase 4, AK4 74.2 1.2 4E-05 35.8 1.6 16 49-64 27-42 (246)
323 3asz_A Uridine kinase; cytidin 74.0 0.99 3.4E-05 35.0 1.0 18 47-64 4-21 (211)
324 3tif_A Uncharacterized ABC tra 74.0 0.97 3.3E-05 37.0 1.0 18 47-64 29-46 (235)
325 4b4t_I 26S protease regulatory 73.9 1.9 6.5E-05 39.7 3.1 35 31-65 186-232 (437)
326 1p5z_B DCK, deoxycytidine kina 73.9 1.1 3.8E-05 36.5 1.3 17 48-64 23-39 (263)
327 1ak2_A Adenylate kinase isoenz 73.8 1.3 4.4E-05 35.4 1.7 16 49-64 16-31 (233)
328 2cbz_A Multidrug resistance-as 73.7 0.99 3.4E-05 37.0 1.0 18 47-64 29-46 (237)
329 3crm_A TRNA delta(2)-isopenten 73.5 1 3.4E-05 39.7 1.0 15 50-64 6-20 (323)
330 3fb4_A Adenylate kinase; psych 73.5 1.2 4E-05 34.7 1.3 14 51-64 2-15 (216)
331 2www_A Methylmalonic aciduria 73.4 4.1 0.00014 35.2 4.9 26 49-75 74-99 (349)
332 3m6a_A ATP-dependent protease 73.2 1.9 6.4E-05 39.7 2.8 17 49-65 108-124 (543)
333 3eph_A TRNA isopentenyltransfe 72.7 0.96 3.3E-05 41.3 0.8 14 50-63 3-16 (409)
334 3qf7_A RAD50; ABC-ATPase, ATPa 72.7 2 7E-05 37.4 2.8 22 51-74 25-46 (365)
335 1sgw_A Putative ABC transporte 72.0 1.2 4E-05 36.4 1.1 19 46-64 32-50 (214)
336 2pze_A Cystic fibrosis transme 72.0 1.1 3.8E-05 36.5 0.9 18 47-64 32-49 (229)
337 3dl0_A Adenylate kinase; phosp 71.9 1.3 4.6E-05 34.4 1.3 14 51-64 2-15 (216)
338 1htw_A HI0065; nucleotide-bind 71.9 1.8 6.2E-05 33.5 2.1 19 46-64 30-48 (158)
339 2pcj_A ABC transporter, lipopr 71.8 1 3.5E-05 36.6 0.6 18 47-64 28-45 (224)
340 2dhr_A FTSH; AAA+ protein, hex 71.7 4.2 0.00014 37.5 4.8 34 32-65 36-80 (499)
341 3hjn_A DTMP kinase, thymidylat 71.3 2.7 9.1E-05 33.4 3.0 26 52-78 3-28 (197)
342 3be4_A Adenylate kinase; malar 71.2 1.4 4.8E-05 34.8 1.4 16 49-64 5-20 (217)
343 1g6h_A High-affinity branched- 71.2 1.2 4.1E-05 36.9 1.0 19 46-64 30-48 (257)
344 3d3q_A TRNA delta(2)-isopenten 71.2 1.4 4.6E-05 39.1 1.3 15 50-64 8-22 (340)
345 2qt1_A Nicotinamide riboside k 71.1 1 3.5E-05 34.9 0.5 18 47-64 19-36 (207)
346 1w1w_A Structural maintenance 71.0 2.3 7.8E-05 37.4 2.8 27 47-75 24-50 (430)
347 2xb4_A Adenylate kinase; ATP-b 71.0 1.4 4.8E-05 35.1 1.3 14 51-64 2-15 (223)
348 2ff7_A Alpha-hemolysin translo 71.0 1.2 4.2E-05 36.8 1.0 18 47-64 33-50 (247)
349 2hf9_A Probable hydrogenase ni 70.9 4.3 0.00015 31.4 4.1 24 50-74 39-62 (226)
350 2pt5_A Shikimate kinase, SK; a 70.8 1.5 5.1E-05 32.5 1.3 14 51-64 2-15 (168)
351 1ji0_A ABC transporter; ATP bi 70.7 1.2 4.3E-05 36.4 1.0 18 47-64 30-47 (240)
352 1zu4_A FTSY; GTPase, signal re 70.7 2.7 9.1E-05 36.3 3.1 22 49-70 105-126 (320)
353 1mv5_A LMRA, multidrug resista 70.6 1.1 3.8E-05 36.7 0.6 18 47-64 26-43 (243)
354 2jeo_A Uridine-cytidine kinase 70.5 1.3 4.6E-05 35.7 1.1 26 39-64 15-40 (245)
355 1vht_A Dephospho-COA kinase; s 70.4 1.4 4.6E-05 34.5 1.1 16 49-64 4-19 (218)
356 2ghi_A Transport protein; mult 70.2 1.3 4.6E-05 36.8 1.0 19 46-64 43-61 (260)
357 2p5t_B PEZT; postsegregational 70.0 2.3 7.7E-05 34.6 2.4 15 50-64 33-47 (253)
358 1vma_A Cell division protein F 70.0 3 0.0001 35.9 3.2 21 49-69 104-124 (306)
359 2d2e_A SUFC protein; ABC-ATPas 70.0 1.3 4.5E-05 36.5 1.0 18 47-64 27-44 (250)
360 3bgw_A DNAB-like replicative h 69.7 2.3 7.8E-05 38.3 2.5 36 41-76 189-224 (444)
361 4hlc_A DTMP kinase, thymidylat 69.7 1.5 5.1E-05 35.3 1.2 16 49-64 2-17 (205)
362 3dm5_A SRP54, signal recogniti 69.7 4.7 0.00016 36.9 4.7 31 50-81 101-131 (443)
363 1cke_A CK, MSSA, protein (cyti 69.6 1.7 6E-05 33.8 1.5 16 49-64 5-20 (227)
364 1vpl_A ABC transporter, ATP-bi 69.6 1.4 4.7E-05 36.8 1.0 18 47-64 39-56 (256)
365 1zuh_A Shikimate kinase; alpha 69.5 1.7 5.9E-05 32.4 1.5 15 50-64 8-22 (168)
366 2yz2_A Putative ABC transporte 69.4 1.4 4.8E-05 36.7 1.0 18 47-64 31-48 (266)
367 1e4v_A Adenylate kinase; trans 69.4 1.5 5E-05 34.4 1.1 14 51-64 2-15 (214)
368 2ocp_A DGK, deoxyguanosine kin 69.3 1.4 4.9E-05 35.2 1.0 16 49-64 2-17 (241)
369 3b9q_A Chloroplast SRP recepto 69.1 2.7 9.1E-05 35.9 2.7 17 49-65 100-116 (302)
370 2zu0_C Probable ATP-dependent 69.0 1.4 4.9E-05 36.8 1.0 19 46-64 43-61 (267)
371 3kl4_A SRP54, signal recogniti 69.0 5.1 0.00017 36.4 4.7 30 50-80 98-127 (433)
372 1b0u_A Histidine permease; ABC 68.9 1.5 5E-05 36.6 1.0 18 47-64 30-47 (262)
373 2nq2_C Hypothetical ABC transp 68.7 1.4 4.9E-05 36.5 0.9 18 47-64 29-46 (253)
374 3nwn_A Kinesin-like protein KI 68.5 2.5 8.5E-05 37.6 2.5 35 33-67 83-123 (359)
375 1ypw_A Transitional endoplasmi 68.5 2.2 7.7E-05 41.3 2.3 17 49-65 238-254 (806)
376 2iut_A DNA translocase FTSK; n 68.5 3.4 0.00012 39.2 3.6 28 49-76 214-241 (574)
377 3gfo_A Cobalt import ATP-bindi 68.3 1.5 5.1E-05 37.1 1.0 19 46-64 31-49 (275)
378 2ixe_A Antigen peptide transpo 68.2 1.5 5.3E-05 36.7 1.0 19 46-64 42-60 (271)
379 2qi9_C Vitamin B12 import ATP- 68.2 1.5 5.1E-05 36.5 0.9 18 47-64 24-41 (249)
380 2z43_A DNA repair and recombin 68.2 2.4 8.1E-05 36.0 2.2 26 47-72 105-130 (324)
381 3qkt_A DNA double-strand break 68.0 2.9 9.9E-05 35.7 2.7 15 50-64 24-38 (339)
382 1q57_A DNA primase/helicase; d 67.3 1.3 4.5E-05 39.8 0.4 32 45-76 238-269 (503)
383 2olj_A Amino acid ABC transpor 67.1 1.7 5.7E-05 36.6 1.0 18 47-64 48-65 (263)
384 2zfi_A Kinesin-like protein KI 67.1 3 0.0001 37.0 2.8 35 33-67 68-108 (366)
385 2iyv_A Shikimate kinase, SK; t 66.9 2.3 8E-05 32.1 1.7 15 50-64 3-17 (184)
386 3tqc_A Pantothenate kinase; bi 66.7 4.7 0.00016 35.1 3.8 28 37-64 74-107 (321)
387 4g1u_C Hemin import ATP-bindin 66.6 1.7 5.7E-05 36.5 0.9 18 47-64 35-52 (266)
388 1ny5_A Transcriptional regulat 66.5 4.8 0.00016 35.2 3.9 28 38-65 145-176 (387)
389 2zr9_A Protein RECA, recombina 66.2 3.1 0.00011 36.2 2.6 29 46-74 58-86 (349)
390 2ihy_A ABC transporter, ATP-bi 66.1 1.7 6E-05 36.7 0.9 19 46-64 44-62 (279)
391 3p32_A Probable GTPase RV1496/ 66.0 3.3 0.00011 35.6 2.7 16 50-65 80-95 (355)
392 1via_A Shikimate kinase; struc 65.7 2.4 8.1E-05 31.9 1.6 14 51-64 6-19 (175)
393 1v5w_A DMC1, meiotic recombina 65.3 2.9 9.9E-05 36.0 2.2 26 47-72 120-145 (343)
394 4a1f_A DNAB helicase, replicat 65.1 3.2 0.00011 36.5 2.4 35 41-75 38-72 (338)
395 2p67_A LAO/AO transport system 64.8 3.4 0.00011 35.5 2.5 18 47-64 54-71 (341)
396 2owm_A Nckin3-434, related to 64.7 4.3 0.00015 37.1 3.3 35 32-66 114-154 (443)
397 1ye8_A Protein THEP1, hypothet 64.4 2.4 8.4E-05 33.1 1.4 14 51-64 2-15 (178)
398 2if2_A Dephospho-COA kinase; a 64.3 2.2 7.6E-05 32.7 1.2 14 51-64 3-16 (204)
399 2i1q_A DNA repair and recombin 64.2 2.7 9.4E-05 35.2 1.8 26 47-72 96-121 (322)
400 2f1r_A Molybdopterin-guanine d 64.2 2.3 7.9E-05 33.4 1.2 26 50-76 3-28 (171)
401 2bbs_A Cystic fibrosis transme 63.9 1.9 6.4E-05 36.8 0.7 18 47-64 62-79 (290)
402 1u94_A RECA protein, recombina 63.5 4.2 0.00014 35.7 2.9 29 46-74 60-88 (356)
403 1rj9_A FTSY, signal recognitio 63.4 5.2 0.00018 34.2 3.4 17 49-65 102-118 (304)
404 1sq5_A Pantothenate kinase; P- 63.2 4.9 0.00017 33.9 3.2 18 47-64 78-95 (308)
405 2nr8_A Kinesin-like protein KI 63.2 4.6 0.00016 35.9 3.1 36 32-67 81-122 (358)
406 3umf_A Adenylate kinase; rossm 63.1 2.3 8E-05 34.9 1.1 17 47-63 27-43 (217)
407 4e22_A Cytidylate kinase; P-lo 63.1 2.8 9.5E-05 34.2 1.6 18 47-64 25-42 (252)
408 3hr8_A Protein RECA; alpha and 61.9 3.6 0.00012 36.4 2.2 27 47-73 59-85 (356)
409 1z6t_A APAF-1, apoptotic prote 61.6 4.8 0.00016 36.1 3.0 33 29-64 126-162 (591)
410 4dsu_A GTPase KRAS, isoform 2B 61.6 4.8 0.00017 29.5 2.6 18 51-69 6-23 (189)
411 1ltq_A Polynucleotide kinase; 61.5 2.8 9.5E-05 34.3 1.3 15 50-64 3-17 (301)
412 2og2_A Putative signal recogni 61.3 4.4 0.00015 35.8 2.7 17 49-65 157-173 (359)
413 2r8r_A Sensor protein; KDPD, P 61.3 5.9 0.0002 33.3 3.3 24 51-74 8-31 (228)
414 1odf_A YGR205W, hypothetical 3 61.2 4.8 0.00017 34.1 2.8 15 50-64 32-46 (290)
415 1jjv_A Dephospho-COA kinase; P 61.0 3 0.0001 32.2 1.3 14 51-64 4-17 (206)
416 1yrb_A ATP(GTP)binding protein 60.8 5.1 0.00017 31.7 2.7 30 49-80 14-43 (262)
417 2pjz_A Hypothetical protein ST 60.0 2.6 8.9E-05 35.3 0.9 18 46-64 28-45 (263)
418 3e70_C DPA, signal recognition 59.8 6 0.0002 34.3 3.2 17 49-65 129-145 (328)
419 2yv5_A YJEQ protein; hydrolase 59.4 5 0.00017 33.9 2.6 29 41-72 158-186 (302)
420 3nh6_A ATP-binding cassette SU 59.3 1.9 6.5E-05 37.2 -0.1 18 47-64 78-95 (306)
421 1uf9_A TT1252 protein; P-loop, 59.1 3 0.0001 31.6 1.0 15 50-64 9-23 (203)
422 1xp8_A RECA protein, recombina 58.6 5.2 0.00018 35.3 2.6 27 46-72 71-97 (366)
423 1ls1_A Signal recognition part 58.4 6.6 0.00023 33.1 3.2 21 49-69 98-118 (295)
424 2j9r_A Thymidine kinase; TK1, 58.3 6.8 0.00023 32.5 3.1 29 48-76 27-55 (214)
425 1tq4_A IIGP1, interferon-induc 57.8 6.2 0.00021 35.5 3.0 29 36-64 36-84 (413)
426 1tf7_A KAIC; homohexamer, hexa 57.7 4.6 0.00016 36.6 2.2 30 39-68 28-58 (525)
427 4aby_A DNA repair protein RECN 57.3 1.6 5.6E-05 37.5 -0.8 24 49-75 61-84 (415)
428 1pui_A ENGB, probable GTP-bind 57.3 2.6 8.9E-05 32.0 0.4 18 47-64 24-41 (210)
429 1ypw_A Transitional endoplasmi 57.3 4 0.00014 39.5 1.8 23 49-73 511-533 (806)
430 1z47_A CYSA, putative ABC-tran 57.2 3.1 0.00011 36.8 1.0 19 46-64 38-56 (355)
431 1j8m_F SRP54, signal recogniti 57.2 7 0.00024 33.2 3.1 20 50-69 99-118 (297)
432 3aez_A Pantothenate kinase; tr 57.1 2.9 0.0001 35.8 0.8 18 47-64 88-105 (312)
433 2yhs_A FTSY, cell division pro 56.6 5.7 0.0002 37.1 2.7 20 49-68 293-312 (503)
434 3sr0_A Adenylate kinase; phosp 56.6 3.9 0.00013 33.0 1.3 13 51-63 2-14 (206)
435 3cf2_A TER ATPase, transitiona 56.4 3.9 0.00013 40.2 1.6 16 50-65 239-254 (806)
436 1qhl_A Protein (cell division 56.0 2.2 7.4E-05 35.3 -0.3 24 51-76 29-52 (227)
437 2yyz_A Sugar ABC transporter, 56.0 3.4 0.00012 36.5 1.0 18 47-64 27-44 (359)
438 2gj8_A MNME, tRNA modification 55.9 5.7 0.0002 29.7 2.1 19 49-68 4-22 (172)
439 1g29_1 MALK, maltose transport 55.9 3.4 0.00012 36.6 1.0 18 47-64 27-44 (372)
440 2it1_A 362AA long hypothetical 55.8 3.4 0.00012 36.5 1.0 18 47-64 27-44 (362)
441 3fvq_A Fe(3+) IONS import ATP- 55.5 3.2 0.00011 36.8 0.7 18 47-64 28-45 (359)
442 3b5x_A Lipid A export ATP-bind 55.1 3.8 0.00013 37.8 1.2 26 39-64 359-384 (582)
443 3tqf_A HPR(Ser) kinase; transf 54.8 5.2 0.00018 32.9 1.8 15 49-63 16-30 (181)
444 1pzn_A RAD51, DNA repair and r 54.8 4.6 0.00016 35.0 1.6 23 47-69 129-151 (349)
445 1v43_A Sugar-binding transport 54.8 3.7 0.00013 36.5 1.0 18 47-64 35-52 (372)
446 4a82_A Cystic fibrosis transme 54.8 3.7 0.00012 37.9 1.0 18 47-64 365-382 (578)
447 2vhj_A Ntpase P4, P4; non- hyd 54.4 6.8 0.00023 34.8 2.7 17 48-64 122-138 (331)
448 3lda_A DNA repair protein RAD5 54.3 5.7 0.0002 35.5 2.2 21 47-67 176-196 (400)
449 2i3b_A HCR-ntpase, human cance 54.3 11 0.00038 29.8 3.7 16 49-64 1-16 (189)
450 1ko7_A HPR kinase/phosphatase; 53.9 9 0.00031 33.5 3.4 30 34-63 113-158 (314)
451 2onk_A Molybdate/tungstate ABC 53.3 4 0.00014 33.6 0.9 17 47-64 23-39 (240)
452 3qf4_B Uncharacterized ABC tra 53.1 4.1 0.00014 37.8 1.1 18 47-64 379-396 (598)
453 3b60_A Lipid A export ATP-bind 53.0 3.7 0.00012 37.9 0.7 18 47-64 367-384 (582)
454 3dzd_A Transcriptional regulat 52.9 15 0.00052 31.8 4.7 28 37-64 140-167 (368)
455 3cio_A ETK, tyrosine-protein k 52.8 22 0.00075 29.8 5.5 41 36-76 85-132 (299)
456 3bfv_A CAPA1, CAPB2, membrane 52.6 17 0.00058 30.1 4.8 45 31-75 58-109 (271)
457 2j37_W Signal recognition part 52.5 8.2 0.00028 35.7 3.0 27 51-78 103-129 (504)
458 3ake_A Cytidylate kinase; CMP 52.4 5.1 0.00017 30.4 1.3 14 51-64 4-17 (208)
459 2obl_A ESCN; ATPase, hydrolase 52.3 2.7 9.1E-05 36.8 -0.3 28 37-65 60-87 (347)
460 2yl4_A ATP-binding cassette SU 52.2 4.2 0.00014 37.6 1.0 18 47-64 368-385 (595)
461 2zpa_A Uncharacterized protein 51.8 7.2 0.00025 37.7 2.6 42 31-75 176-217 (671)
462 2o5v_A DNA replication and rep 51.6 6.2 0.00021 34.7 1.9 14 51-64 28-41 (359)
463 1u0l_A Probable GTPase ENGC; p 51.4 8.7 0.0003 32.2 2.8 16 48-63 168-183 (301)
464 3d31_A Sulfate/molybdate ABC t 51.2 3 0.0001 36.7 -0.2 18 47-64 24-41 (348)
465 1of1_A Thymidine kinase; trans 50.9 3.2 0.00011 37.4 -0.1 16 49-64 49-64 (376)
466 2v3c_C SRP54, signal recogniti 50.5 11 0.00039 33.8 3.6 17 50-66 100-116 (432)
467 3qf4_A ABC transporter, ATP-bi 50.0 4.8 0.00016 37.3 1.0 18 47-64 367-384 (587)
468 2npi_A Protein CLP1; CLP1-PCF1 49.9 6.3 0.00022 35.8 1.8 20 45-64 134-153 (460)
469 2ffh_A Protein (FFH); SRP54, s 49.9 9.8 0.00034 34.4 3.0 28 50-78 99-126 (425)
470 2dyk_A GTP-binding protein; GT 49.8 6.1 0.00021 28.1 1.4 13 51-63 3-15 (161)
471 4ad8_A DNA repair protein RECN 49.7 3.4 0.00012 37.4 -0.1 23 50-74 61-83 (517)
472 1q3t_A Cytidylate kinase; nucl 49.1 7.1 0.00024 31.0 1.8 16 49-64 16-31 (236)
473 3cf2_A TER ATPase, transitiona 48.8 8.1 0.00028 38.0 2.4 16 50-65 512-527 (806)
474 1w36_B RECB, exodeoxyribonucle 48.5 11 0.00039 37.7 3.5 27 50-76 17-43 (1180)
475 1w4r_A Thymidine kinase; type 48.2 11 0.00038 30.8 2.8 29 48-76 19-47 (195)
476 3lxw_A GTPase IMAP family memb 48.1 10 0.00035 30.6 2.6 14 50-63 22-35 (247)
477 2ged_A SR-beta, signal recogni 47.9 6.7 0.00023 29.2 1.4 13 51-63 50-62 (193)
478 2f6r_A COA synthase, bifunctio 47.9 5.6 0.00019 33.1 1.0 15 50-64 76-90 (281)
479 2xxa_A Signal recognition part 47.9 9.5 0.00033 34.3 2.6 26 51-77 102-127 (433)
480 1uj2_A Uridine-cytidine kinase 47.9 6.4 0.00022 31.7 1.3 14 51-64 24-37 (252)
481 2qag_B Septin-6, protein NEDD5 47.8 7 0.00024 35.6 1.7 26 39-64 30-57 (427)
482 2h92_A Cytidylate kinase; ross 47.7 7.6 0.00026 30.0 1.7 17 49-65 3-19 (219)
483 2ce2_X GTPase HRAS; signaling 47.7 6.2 0.00021 27.9 1.1 13 52-64 6-18 (166)
484 3e2i_A Thymidine kinase; Zn-bi 47.7 12 0.0004 31.4 2.9 29 47-75 26-54 (219)
485 1z2a_A RAS-related protein RAB 47.4 7.1 0.00024 27.9 1.4 13 51-63 7-19 (168)
486 1oxx_K GLCV, glucose, ABC tran 47.2 3 0.0001 36.7 -0.8 18 47-64 29-46 (353)
487 3tui_C Methionine import ATP-b 47.2 5.7 0.0002 35.4 1.0 18 47-64 52-69 (366)
488 2p5s_A RAS and EF-hand domain 46.9 6.7 0.00023 29.7 1.3 14 50-63 29-42 (199)
489 2rcn_A Probable GTPase ENGC; Y 46.8 12 0.00041 33.1 3.0 16 48-63 214-229 (358)
490 1h65_A Chloroplast outer envel 46.8 14 0.00048 29.9 3.3 33 31-63 18-53 (270)
491 3r20_A Cytidylate kinase; stru 46.5 7.5 0.00026 32.2 1.6 16 49-64 9-24 (233)
492 1ky3_A GTP-binding protein YPT 46.0 7.6 0.00026 28.1 1.4 14 51-64 10-23 (182)
493 1kao_A RAP2A; GTP-binding prot 45.8 7.8 0.00027 27.5 1.4 13 51-63 5-17 (167)
494 1nrj_B SR-beta, signal recogni 45.7 7.6 0.00026 29.6 1.4 15 50-64 13-27 (218)
495 1z0j_A RAB-22, RAS-related pro 45.4 7.9 0.00027 27.7 1.4 18 51-69 8-25 (170)
496 2f9l_A RAB11B, member RAS onco 45.2 7.9 0.00027 29.3 1.4 14 51-64 7-20 (199)
497 1ek0_A Protein (GTP-binding pr 45.0 8.1 0.00028 27.5 1.4 13 52-64 6-18 (170)
498 3gd7_A Fusion complex of cysti 44.6 9 0.00031 34.2 1.9 20 46-65 44-63 (390)
499 2dpy_A FLII, flagellum-specifi 44.5 4.6 0.00016 36.4 -0.0 26 38-64 147-172 (438)
500 1a7j_A Phosphoribulokinase; tr 44.4 7.1 0.00024 32.9 1.1 16 49-64 5-20 (290)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.30 E-value=1.2e-12 Score=123.59 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhhhh
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHKIV 80 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~~~ 80 (194)
|+|||.|.+||.+|+++|.+|+++|++||||||||++||+|++.|+...+.+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~k 53 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLK 53 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCe
Confidence 7899999999999999999999999999999999999999999998764433
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.12 E-value=4.8e-11 Score=110.06 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
|+|||+|.+||..|+++|..|+++|++||||||||++||+|++.+
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~ 46 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV 46 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999999873
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.08 E-value=7.4e-11 Score=108.86 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
.+|+|||+|.+||..|+.++.+|+++|++||||||||++||+|++.+
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~ 50 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL 50 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC
Confidence 35789999999999999999999999999999999999999999875
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.76 E-value=7.7e-09 Score=83.08 Aligned_cols=46 Identities=24% Similarity=0.135 Sum_probs=39.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPF-DAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy-~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.| .|||+|.+.+..+. +|+.+|+.||||+|||++|++|++.++..
T Consensus 38 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 456 49999999887764 68899999999999999999999987754
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.74 E-value=1.1e-08 Score=80.32 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=40.0
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.++|. |||+|.+.+..+. +++.+|+.+|||+|||++|++|++.++..
T Consensus 20 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~ 67 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCT
T ss_pred HCCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcc
Confidence 36675 9999999877764 67899999999999999999999987654
No 6
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.74 E-value=1e-08 Score=83.64 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=40.9
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.+.|. |+|+|.+.+..+. +|+.+|+.||||+|||++|++|++..+..
T Consensus 46 ~~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 46 RQNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp TTTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 35777 9999999887764 67899999999999999999999988764
No 7
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=82.39 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=39.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |||+|.+.+..+. +|+.+|+.||||+|||++|++|++.++..
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 4676 9999999887764 67889999999999999999999988764
No 8
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.69 E-value=2.3e-08 Score=81.68 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
+.|. |+|+|.+.+..+. +|+.+|+.+|||+|||++|++|++.++...
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 4565 9999999887764 578999999999999999999999987654
No 9
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.68 E-value=1.5e-08 Score=80.73 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.++|. |||+|.+.+..+. +++.+|+.+|||+|||++|++|++.++...
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred HCCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 35675 9999999887764 678999999999999999999999887543
No 10
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.67 E-value=2.4e-08 Score=78.27 Aligned_cols=46 Identities=24% Similarity=0.147 Sum_probs=39.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+. +++.+|+.+|||+|||++|++|++.++..
T Consensus 19 ~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~ 65 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAP 65 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred cCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhh
Confidence 4564 9999999887764 67899999999999999999999998753
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.66 E-value=2.9e-08 Score=80.07 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=39.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+ .+|+.+|+.+|||+|||++|+.|++.++..
T Consensus 43 ~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp TTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 4565 999999987775 468899999999999999999999988754
No 12
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.64 E-value=3.1e-08 Score=80.21 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=39.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
++|. |||+|.+.+..+ .+|+.+|+.+|||+|||++|++|++..+..
T Consensus 42 ~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVL 88 (230)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5676 999999988775 468899999999999999999999887653
No 13
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.64 E-value=3.8e-08 Score=81.46 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+.|. ||++|.+.+..+. +|+.+|+.+|||+|||++|++|++..+....
T Consensus 61 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~ 109 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETP 109 (249)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCC
Confidence 5674 9999999887764 6789999999999999999999998776543
No 14
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.64 E-value=3.2e-08 Score=78.82 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=40.1
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+. +++.+|+.+|||+|||++|++|++..+..
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~ 78 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEP 78 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhc
Confidence 6777 9999999887764 57889999999999999999999988654
No 15
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.62 E-value=3.8e-08 Score=82.01 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+. .++.+|+.||||+|||++|++|++..+..
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 3566 9999999887764 46889999999999999999999988765
No 16
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.62 E-value=2.2e-08 Score=80.09 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+. +|+.+|+.+|||+|||++|++|++..+..
T Consensus 22 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~ 68 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKP 68 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 4554 9999999887764 57899999999999999999999988764
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.60 E-value=2.6e-08 Score=86.52 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.|+|+|+|+|.+.+..+. +|+.+|+.||||+|||++|+.+++..+..
T Consensus 17 ~~~~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~~ 63 (414)
T 3oiy_A 17 KFGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK 63 (414)
T ss_dssp HHSSCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 368899999999887764 67899999999999999999998776633
No 18
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.58 E-value=6.2e-08 Score=82.99 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+.|. |+|+|.+.+..+ ..|+.+|+.||||+|||++|++|++..+...+
T Consensus 33 ~~~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 4564 999999988765 47889999999999999999999998876543
No 19
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.58 E-value=2.7e-08 Score=81.05 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=39.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
++|. |+|+|.+.+..+. +|+.+|+.+|||+|||++|++|++..+..
T Consensus 48 ~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5677 9999999887764 67889999999999999999999988754
No 20
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.55 E-value=5e-08 Score=83.39 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=39.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhc-CCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDN-SKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~-gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+.|. |+++|.+.+..+. .. ++++|+.||||||||++|++|++..+....
T Consensus 110 ~g~~~pt~iQ~~ai~~il---~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~ 160 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLML---AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (300)
T ss_dssp TTCCSCCHHHHHHHHHHT---SSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS
T ss_pred cCCCCCCHHHHHHHHHHH---cCCCCeEEEECCCCCCccHHHHHHHHHhhhccC
Confidence 4565 9999999877663 22 389999999999999999999998876543
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.55 E-value=7.7e-08 Score=84.81 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
||+|||+|.+.+..+. .|+.+|+.+|||+|||++|++|++..+...
T Consensus 2 ~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~ 47 (555)
T 3tbk_A 2 PLKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKF 47 (555)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhc
Confidence 7899999999887763 678999999999999999999999887764
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.53 E-value=9.6e-08 Score=84.81 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
+.|. |+|+|.+.+..+ .+|+.+|+.||||||||++|++|++..+...
T Consensus 74 ~g~~~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 5677 999999988775 4789999999999999999999999987654
No 23
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.53 E-value=7.4e-08 Score=75.31 Aligned_cols=48 Identities=17% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.+.+.|||+|.+.+..+. +++.+|+.+|||+|||++++++++.++...
T Consensus 29 ~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 76 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKK 76 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhc
Confidence 345779999999887764 578899999999999999999988876543
No 24
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.52 E-value=6.6e-08 Score=87.40 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=42.1
Q ss_pred CCCC-CCHHHHHHHHHHHHHHh-cCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLD-NSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~-~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
++|. |+|+|.+.+..++ . .++.+|+.||||||||++|++|++.++...+
T Consensus 90 ~g~~~~~~~Q~~~i~~~l---~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~ 140 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPIL---SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 140 (563)
T ss_dssp TCCSSCCHHHHHHHHHHH---SSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHh---cCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc
Confidence 6777 9999999887764 3 4689999999999999999999999887654
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.50 E-value=7.3e-08 Score=88.42 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=42.5
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHh-cCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLD-NSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~-~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.++|. |+|+|.+.+..+. . .++.+|+.||||+|||++|++|++..+...+
T Consensus 38 ~~g~~~~~~~Q~~~i~~il---~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~ 89 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPIL---SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 89 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHH---CSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHH---ccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc
Confidence 47887 9999999887764 3 4789999999999999999999999887653
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.50 E-value=7.5e-08 Score=81.93 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=40.7
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.+.|. |+|+|.+.+..+... .++.+|+.+|||+|||++|++|++..+....
T Consensus 42 ~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~ 93 (412)
T 3fht_A 42 AMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 93 (412)
T ss_dssp HTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS
T ss_pred HcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC
Confidence 35675 999999988776421 2489999999999999999999998776443
No 27
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.49 E-value=8.5e-08 Score=82.39 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=39.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
++|. |+|+|.+.+..+. +|+.+|+.+|||+|||++|++|++..+.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~ 100 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLD 100 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHh
Confidence 5676 9999999887764 6788999999999999999999998765
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.48 E-value=1.6e-07 Score=77.62 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=36.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
++|. |||+|.+.+..+. +++.+|+.+|||+|||++|+.|++.
T Consensus 12 ~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 5665 9999999877654 6789999999999999999999775
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.46 E-value=1.1e-07 Score=80.08 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=38.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+... .++.+|+.+|||+|||++|+.+++..+..
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~ 71 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNP 71 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhcc
Confidence 4555 999999988776421 23899999999999999999999887653
No 30
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.46 E-value=1.8e-07 Score=79.91 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=39.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |+|+|.+.+..+. .|+.+|+.+|||+|||++|+++++..+..
T Consensus 58 ~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~ 104 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIEL 104 (414)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCT
T ss_pred cCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhh
Confidence 5675 9999999887764 57889999999999999999999987754
No 31
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.45 E-value=1.1e-07 Score=80.45 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
++|. |||+|.+.+..+. .++.+|+.+|||+|||++|++|++..+..
T Consensus 26 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~ 72 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEP 72 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcc
Confidence 5676 9999999877763 57899999999999999999999887654
No 32
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.44 E-value=1.9e-07 Score=82.78 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.+|+|||+|.+.+..+. +|+.+|+.+|||+|||++|+.|++..+...
T Consensus 4 ~~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~ 50 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNM 50 (556)
T ss_dssp ----CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhC
Confidence 47889999999877763 578899999999999999999998887654
No 33
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.44 E-value=1.8e-07 Score=79.82 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |||+|.+.+..+. +++.+|+.+|||+|||++|++|++..+..
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~ 85 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKP 85 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhh
Confidence 4576 9999999887764 56889999999999999999999987754
No 34
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.42 E-value=9.9e-08 Score=80.72 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
++|. |||+|.+.+..+. +++.+|+.+|||+|||++|++|++.++..
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~ 85 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDT 85 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhc
Confidence 5664 9999999887764 47889999999999999999999988754
No 35
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.38 E-value=2.8e-07 Score=76.75 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=38.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|. |||+|.+.+..+ +..++.+|+.+|||+|||++++++++.++..
T Consensus 24 ~g~~~~~~~Q~~~i~~~---~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 71 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLF---LNDEYNIVAQARTGSGKTASFAIPLIELVNE 71 (367)
T ss_dssp HTCCSCCHHHHHHHHHH---HHTCSEEEEECCSSSSHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHH---hCCCCCEEEECCCCChHHHHHHHHHHHHhcc
Confidence 4554 999999977766 3445799999999999999999999887754
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.36 E-value=1.3e-07 Score=83.88 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=40.1
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+.|. |+|+|.+.+..+.. ..++++|+.||||||||++|++|++..+....
T Consensus 110 ~g~~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~ 160 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS
T ss_pred cCCCCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC
Confidence 4565 99999998877642 12489999999999999999999988776543
No 37
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.34 E-value=3e-07 Score=86.24 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
.|+|. |+|+|.+.+..|. +|+.+|+.+|||+|||++|++|++.
T Consensus 39 ~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 39 VFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp TSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH
Confidence 47886 9999999888764 5889999999999999999999874
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.26 E-value=6.9e-07 Score=82.60 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
+|.|||+|.+.+..+. +|+.+|+.+|||+|||++|+.|++..+...
T Consensus 5 ~~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~ 50 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKK 50 (699)
T ss_dssp --CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhc
Confidence 5789999999877764 478999999999999999999998877665
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.26 E-value=1e-06 Score=85.78 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcC--CceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~g--k~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.+||+|+++|.+.+..|...+..+ ..+|+.+|||||||++|+.|++..+...
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g 417 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG 417 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999888776 4899999999999999999999877543
No 40
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.23 E-value=4.3e-07 Score=83.47 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
.|+|. |||+|.+.+..+. +|+.+|+.+|||+|||++|++|++.
T Consensus 20 ~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~ 63 (523)
T 1oyw_A 20 TFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALL 63 (523)
T ss_dssp TTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHH
Confidence 47886 9999999887764 6789999999999999999999874
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.23 E-value=1.2e-06 Score=80.88 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 26 ~fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|+|. |||+|.+.+..+. .|+++|+.+|||+|||++|+.|++..+...
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~ 56 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKF 56 (696)
T ss_dssp TTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhC
Confidence 45654 9999999887763 588999999999999999999999887654
No 42
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.2e-06 Score=86.04 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=44.1
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 23 SEFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 23 ~~~~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
....|||.|+|+|.+.+..| .+|..+|+.||||+|||++|++|++..+...+
T Consensus 177 ~~~~~~f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~ 228 (1108)
T 3l9o_A 177 EARTYPFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ 228 (1108)
T ss_dssp CSSCCSSCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhcCC
Confidence 35568999999999977765 67899999999999999999999988775443
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.15 E-value=2.3e-06 Score=86.12 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCC--ceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk--~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|||+|+|+|.+.+..|...+.+++ .+|+.+|||+|||++++.+++..+...
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g 652 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 652 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999888886 899999999999999999988766544
No 44
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.8e-06 Score=84.57 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 24 ~~~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
...|||+|+|+|.+.+..| .+|+.+|+.+|||+|||++|+++++..+...
T Consensus 80 ~~~~~f~L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~g 129 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKNK 129 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhccC
Confidence 4568999999999987765 5688999999999999999999988877543
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.14 E-value=9.9e-07 Score=74.93 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
|.|||.|.+.+..+. .+ .+|+.+|||+|||++++++++..+.
T Consensus 8 ~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~ 49 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLT 49 (494)
T ss_dssp HCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHh----hC-CEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999877664 34 8999999999999999999888765
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.11 E-value=3.5e-06 Score=83.77 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=41.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 24 ~~~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
...|||+++|+|.+.+..| .+|+.+|+.+|||+|||++|+.+++..+..
T Consensus 33 ~~~~~f~l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~ 81 (997)
T 4a4z_A 33 ARSWPFELDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN 81 (997)
T ss_dssp SCCCSSCCCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc
Confidence 4579999999999876655 578999999999999999999987776544
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.10 E-value=3.2e-06 Score=74.69 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=37.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 24 ~~~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
.+.|+|.|||.|.+.+..+. .+..+|+.+|||+|||++++.++..
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHH
Confidence 45678899999999777653 4567999999999999999988664
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.06 E-value=3.3e-06 Score=75.35 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+|+|||.|.+.+..+.. +..+|+.+|||+|||++++.+++..+...+
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~ 157 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE 157 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 67999999998877653 478999999999999999999887765443
No 49
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.06 E-value=4.4e-06 Score=69.02 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=35.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 24 ~~~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
.+.|+|.++++|.+.+..+. .+..+|+.+|||+|||+.++.++..
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 45567789999999776643 4556999999999999998887654
No 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.03 E-value=4.9e-06 Score=79.48 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
++.|||+|.+.+..+ ..|+.+|+.+|||+|||++|++|++..+...
T Consensus 246 ~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~ 291 (797)
T 4a2q_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNM 291 (797)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhc
Confidence 346999999977766 3578999999999999999999998887664
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.99 E-value=8.7e-06 Score=74.51 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-CceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNS-KFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~g-k~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
+.|||+|.+.++.+.+++.++ ..+++.+|||||||++++..+...+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHh
Confidence 379999999999999999876 55899999999999997765544443
No 52
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.98 E-value=5.2e-06 Score=83.40 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.++|.|+|+|.+.+..+. +|+.+|+.||||||||++||.+++..+..
T Consensus 74 ~~gf~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~~ 120 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK 120 (1104)
T ss_dssp HSSSCCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHhc
Confidence 478899999999877763 57899999999999999998888776643
No 53
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.98 E-value=4.2e-06 Score=78.45 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=39.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
++|. +||+|.+.+..+ +.+++++|+.||||+|||+++..+++..+..
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 6884 999999977662 4568999999999999999999999876653
No 54
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.95 E-value=1.1e-05 Score=67.24 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.|+|+|.+.+..+.. +..+|+.+|||+|||++++.++..++..
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~ 155 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN 155 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHc
Confidence 6899999998776543 3567889999999999998887776653
No 55
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.93 E-value=4.1e-06 Score=78.86 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.1
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 27 fPy~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
++|. |||+|.+.+..+ +.+++++|+.+|||+|||+++..+++..+...
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~ 67 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ 67 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC
Confidence 6784 999999977652 35689999999999999999999998776643
No 56
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.91 E-value=1.5e-06 Score=78.83 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCC-CCHHHHHHHHHHHHHHhc-CCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFD-AYDIQSNFMKNLYYTLDN-SKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~-py~iQ~e~M~~I~~~L~~-gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|. |+++|.+.+..+. .. ++.+|+.+|||+|||++|+.+++..+...
T Consensus 138 g~~~p~~~Q~~ai~~i~---~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~ 186 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLL---SNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS 186 (508)
T ss_dssp -CEECCCTTSSSHHHHH---CSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT
T ss_pred cccCcHHHHHHHHHHHH---cCCCCCEEEECCCCccHHHHHHHHHHHHHHhC
Confidence 444 8999999776664 22 48999999999999999999988876554
No 57
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=65.84 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
++..+++|.+.+..| ..|+++++.||||||||..+.++++..+...
T Consensus 59 ~~p~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~ 104 (235)
T 3llm_A 59 LLPVKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQN 104 (235)
T ss_dssp TSGGGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhc
Confidence 455788888877765 5789999999999999998888877755443
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.84 E-value=4.3e-06 Score=78.53 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=37.7
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 27 FPF-DAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 27 fPy-~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
++| .|||+|.+.+..+ .+++++|+.+|||+|||+++..+++..+..
T Consensus 21 ~g~~~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 67 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK 67 (702)
T ss_dssp C---CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 677 4999999987774 468999999999999999999998876653
No 59
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.83 E-value=1.1e-05 Score=79.23 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
++.|+|+|.+.+..+ .+|+.+|+.+|||+|||++|+.|++..+...
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~ 291 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNM 291 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTC
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhc
Confidence 456999999987776 3578999999999999999999998876653
No 60
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.81 E-value=1.5e-05 Score=79.47 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
|+|.| |+|.+.+..+. +|+++|+.||||||||+ |++|++.++...+
T Consensus 54 ~g~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~ 99 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALKG 99 (1054)
T ss_dssp TCSCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTTS
T ss_pred cCCCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhcC
Confidence 56668 99999888764 68899999999999999 8888888776544
No 61
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.74 E-value=2.4e-05 Score=77.33 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
..|.|||+|..-+..+. +|+ |.+|+||+||||+|++|++..
T Consensus 80 lG~~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~ 120 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLN 120 (844)
T ss_dssp HSCCCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHH
Confidence 45689999999777653 566 999999999999999998843
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.62 E-value=9.6e-05 Score=77.44 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=41.1
Q ss_pred CCC-CC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 26 PFP-FD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 26 ~fP-y~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|| |+ +.++|......+ +..++++++.||||+|||+++.++++..+..+
T Consensus 73 ~f~g~~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~ 123 (1724)
T 4f92_B 73 GFEGFKTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKH 123 (1724)
T ss_dssp TCTTCSBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGG
T ss_pred hcCCCCCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhh
Confidence 365 77 899999966554 57889999999999999999999999887653
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.59 E-value=7.4e-05 Score=78.27 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=39.5
Q ss_pred CCC-CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 28 PFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 28 Py~-py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|. +.|+|.+.+..|| ..+.++++.||||+|||+++.+|++..+...
T Consensus 923 ~f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~ 970 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQS 970 (1724)
T ss_dssp TCSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC
Confidence 355 8899999777764 6678999999999999999999999877654
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.51 E-value=0.00022 Score=63.35 Aligned_cols=48 Identities=13% Similarity=-0.042 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
.+...+||.|.+.+..+......+..+|+-.|||+|||+..|+.+...
T Consensus 33 ~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~ 80 (500)
T 1z63_A 33 NIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA 80 (500)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH
Confidence 344569999999988887777778889999999999999977654443
No 65
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.46 E-value=8.6e-05 Score=74.05 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
+.|.|||+|..-+..+. +|+ |.+++||+||||++++|++..
T Consensus 108 lG~rP~~VQ~~~ip~Ll----~G~--Iaem~TGeGKTLa~~LP~~l~ 148 (922)
T 1nkt_A 108 LDQRPFDVQVMGAAALH----LGN--VAEMKTGEGKTLTCVLPAYLN 148 (922)
T ss_dssp HSCCCCHHHHHHHHHHH----TTE--EEECCTTSCHHHHTHHHHHHH
T ss_pred cCCCCCHHHHHHHHhHh----cCC--EEEecCCCccHHHHHHHHHHH
Confidence 56789999999776653 565 999999999999999998643
No 66
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.46 E-value=0.0001 Score=73.00 Aligned_cols=41 Identities=27% Similarity=0.210 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
+.+.|||+|..-+..+ .+|+ |.+++||||||++|++|++..
T Consensus 71 lg~~p~~VQ~~~i~~l----l~G~--Iaem~TGsGKTlaf~LP~l~~ 111 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVL----NERC--IAEMRTGEGKTLTATLPAYLN 111 (853)
T ss_dssp HSCCCCHHHHHHHHHH----HSSE--EEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCChHHHhhcccc----cCCe--eeeecCCchHHHHHHHHHHHH
Confidence 4467999999976655 3565 999999999999999998853
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.46 E-value=3e-05 Score=69.87 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=29.6
Q ss_pred HHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 44 YTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 44 ~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.+|.+++++|+.+|||||||++|+.|++..+...+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~ 50 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR 50 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 45677899999999999999999999998765443
No 68
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.39 E-value=8.5e-06 Score=77.95 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCCHHHH-----HHHHHHH--HHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 30 DAYDIQS-----NFMKNLY--YTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 30 ~py~iQ~-----e~M~~I~--~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.|.++|. ..+..+. .++..++++|+.||||||||++|++|++..+...+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~ 270 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR 270 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4788998 5444433 33457899999999999999999999998765544
No 69
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.38 E-value=4.8e-05 Score=68.26 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 45 TLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
++.+|+++|+.||||||||++|++|++..+...+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~ 37 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR 37 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999988665544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.25 E-value=0.00019 Score=71.98 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHhc----------CCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 30 DAYDIQSNFMKNLYYTLDN----------SKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 30 ~py~iQ~e~M~~I~~~L~~----------gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.|||+|...+..+..++.. ++.+|+.+|||||||+++ ++++.++..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~ 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh
Confidence 4999999999999988754 367999999999999997 565666543
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00023 Score=71.42 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
..|.|||+|..-+..+ -+|+ |.++.||+|||+++++|++.
T Consensus 76 lG~~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L 115 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVAL 115 (997)
T ss_dssp TCCCCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHH
Confidence 5678999999977665 3566 99999999999999999854
No 72
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.19 E-value=9.5e-05 Score=66.31 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=26.6
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+..+.++|+.+|||||||++|++|+|..+...+
T Consensus 16 l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 48 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLRR 48 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT
T ss_pred HhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC
Confidence 455566799999999999999999987665544
No 73
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.12 E-value=0.00018 Score=64.30 Aligned_cols=30 Identities=10% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
|+++|+.+|||||||++|+.|++..+...+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g 31 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR 31 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence 678999999999999999999986554444
No 74
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.04 E-value=0.0011 Score=59.59 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=42.7
Q ss_pred ccCCCCC-CCHHHHHHHHHHHHHHhcCC-ceeeeCCCCCCchHHHHHHHHHHHhhhhh
Q psy14272 24 EFPFPFD-AYDIQSNFMKNLYYTLDNSK-FGIFESPTGTGKSLSLICGILKWYYDHKI 79 (194)
Q Consensus 24 ~~~fPy~-py~iQ~e~M~~I~~~L~~gk-~~I~ESPTGTGKTLS~L~~al~wl~~~~~ 79 (194)
-.+.+|. .-+.|.+.+..+..+|..+. +++|.||.|||||. +|...+.|+...+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~-ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT-LTKFIIEALISTGE 74 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH-HHHHHHHHHHHTTC
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH-HHHHHHHHHHhcCC
Confidence 3556676 77999999999998888775 99999999999995 45666777766554
No 75
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.01 E-value=0.00019 Score=67.82 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
|.|+|.. . ..++.+++++|+.||||||||++|++|+|..+...+
T Consensus 172 ~lpiq~~---~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~ 215 (618)
T 2whx_A 172 GEPDYEV---D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR 215 (618)
T ss_dssp CCCCCCC---C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT
T ss_pred CCCcccc---C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence 5666654 2 556678999999999999999999999998776543
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0032 Score=60.52 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
....||.|.+.++.+......+..+|+-.+||+|||+..|+.+...
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l 279 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWL 279 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHH
Confidence 4569999999999998888889999999999999999877765433
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.47 E-value=0.0033 Score=62.04 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
..++++||.|.+.+..+.. ..+..+|+-.|||+|||+.++..+...+..
T Consensus 149 ~~~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~ 197 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLS 197 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3558899999997665542 124678999999999999998886665543
No 78
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.46 E-value=0.0013 Score=63.61 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHH
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGIL 71 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al 71 (194)
|.++|.+ .|..+|..+.++|+.||||+|||+ ++|++
T Consensus 94 P~~~q~~---~i~~~l~~~~~vii~gpTGSGKTt--llp~l 129 (773)
T 2xau_A 94 PVHAQRD---EFLKLYQNNQIMVFVGETGSGKTT--QIPQF 129 (773)
T ss_dssp GGGGGHH---HHHHHHHHCSEEEEECCTTSSHHH--HHHHH
T ss_pred ChHHHHH---HHHHHHhCCCeEEEECCCCCCHHH--HHHHH
Confidence 4456666 566677888999999999999998 56655
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.37 E-value=0.003 Score=59.29 Aligned_cols=48 Identities=25% Similarity=0.113 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHh-----cCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 29 FDAYDIQSNFMKNLYYTLD-----NSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~-----~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
...||.|.+-+..++.++. .+..+|+-.+||+|||+..|+.+...+..
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~ 106 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ 106 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHh
Confidence 3589999999999998874 45678999999999999988876655443
No 80
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.04 E-value=0.0068 Score=56.73 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhhhh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHKIV 80 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~~~ 80 (194)
--+.|.+ +|..+|....+.|+.||.|||||.+++ -++.++...+.+
T Consensus 190 LN~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~~~~ 235 (646)
T 4b3f_X 190 LDTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQGLK 235 (646)
T ss_dssp CCHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHTTCC
T ss_pred CCHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhCCCe
Confidence 3478988 677778777899999999999998754 445555555544
No 81
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.02 E-value=0.0022 Score=61.52 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.9
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
+++++|+.||||+|||+
T Consensus 154 ~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 57899999999999998
No 82
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.41 E-value=0.015 Score=57.50 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 26 ~fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
...+.||++|.-=. + +|..|+ |.|+.||+||||++.+|++..+.
T Consensus 71 ~lg~r~~dvQligg--~--~L~~G~--iaEM~TGEGKTLva~lp~~lnAL 114 (822)
T 3jux_A 71 TLGMRPFDVQVMGG--I--ALHEGK--VAEMKTGEGKTLAATMPIYLNAL 114 (822)
T ss_dssp HTSCCCCHHHHHHH--H--HHHTTC--EEECCTTSCHHHHTHHHHHHHHT
T ss_pred HhCCCCcHHHHHHH--H--HHhCCC--hhhccCCCCccHHHHHHHHHHHh
Confidence 35677899987533 3 345675 88999999999999999875443
No 83
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.33 E-value=0.0056 Score=58.97 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=25.4
Q ss_pred HHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 42 LYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 42 I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
|..+|.+++++|+.||||||||++|+.+++.
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~ 255 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA 255 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH
Confidence 3344567889999999999999999988764
No 84
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.24 E-value=0.013 Score=54.83 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHhcCCceeeeCCCCCCch--HHHHHHHHH
Q psy14272 32 YDIQSNFMKNLYYTLDNSKFGIFESPTGTGKS--LSLICGILK 72 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKT--LS~L~~al~ 72 (194)
-+.|...+..+ + .++++|+.||+||||| +++|++.+.
T Consensus 151 ~~~Q~~Ai~~~---l-~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 151 INWQKVAAAVA---L-TRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp CCHHHHHHHHH---H-TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---h-cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 47899866554 3 5789999999999999 666776655
No 85
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.20 E-value=0.016 Score=42.92 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcC--CceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~g--k~~I~ESPTGTGKTLS 65 (194)
|...-++.+.+..+...+..+ ..++|.+|+|||||..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHH
Confidence 333344555666777777654 6789999999999964
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.19 E-value=0.025 Score=43.96 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcC------CceeeeCCCCCCchHH
Q psy14272 33 DIQSNFMKNLYYTLDNS------KFGIFESPTGTGKSLS 65 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~~g------k~~I~ESPTGTGKTLS 65 (194)
+.|...+..+...+... ..++|.+|+|||||.-
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYL 70 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHH
Confidence 46777788887777754 6899999999999964
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.10 E-value=0.018 Score=43.29 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 39 MKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 39 M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
...+..+...+..++|.+|+|||||..
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 334444445678899999999999953
No 88
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.98 E-value=0.01 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCC---ceeeeCCCCCCchHH
Q psy14272 33 DIQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLS 65 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~~gk---~~I~ESPTGTGKTLS 65 (194)
-++...+..|..++..+. .++|.+|+|+|||..
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 345666778888887765 689999999999954
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.93 E-value=0.045 Score=41.96 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHh-----cCCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYTLD-----NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~-----~gk~~I~ESPTGTGKTLS 65 (194)
.+.|...+..+...+. .|..++|-+|+|||||.-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 4688888888877664 468899999999999953
No 90
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.92 E-value=0.0088 Score=50.37 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
+-+|.+.+..+..++..+..++|.+|+|||||..
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 4457778888888888899999999999999953
No 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.86 E-value=0.026 Score=48.30 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHhcCC---ceeeeCCCCCCchHHHHHH
Q psy14272 31 AYDIQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk---~~I~ESPTGTGKTLS~L~~ 69 (194)
+||.|.+.++.+..++.+|+ ..+|.||.|+|||.....-
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 58999999999999998875 3899999999998654433
No 92
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.85 E-value=0.02 Score=43.07 Aligned_cols=28 Identities=4% Similarity=-0.008 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 38 FMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 38 ~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
+...+..+...+..++|.+|+|||||..
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHH
Confidence 3334444445678899999999999953
No 93
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.67 E-value=0.021 Score=42.45 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~--gk~~I~ESPTGTGKTLS 65 (194)
|...-++...+..+...+.. ...++|.+|+|||||..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 33334455566677777765 46789999999999954
No 94
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.67 E-value=0.066 Score=45.21 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHhcC----CceeeeCCCCCCchHHH
Q psy14272 31 AYDIQSNFMKNLYYTLDNS----KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~g----k~~I~ESPTGTGKTLS~ 66 (194)
-.+.....+..+...+..+ ..++|.+|+|||||...
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 3455555555677777665 36899999999999753
No 95
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.60 E-value=0.018 Score=43.71 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcC--CceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~g--k~~I~ESPTGTGKTLS 65 (194)
++.+.+..|..++..+ ..++|.+|+|||||..
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 4556667888888766 3599999999999964
No 96
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.31 E-value=0.033 Score=45.68 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.-.-+|...+..+..++..+. +++|.||+|||||...
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 3333457778888888888774 6999999999999653
No 97
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.21 E-value=0.024 Score=46.23 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=14.7
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
...++|.+|+|||||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999964
No 98
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.21 E-value=0.037 Score=45.80 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHh-------cCCceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLD-------NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~-------~gk~~I~ESPTGTGKTLS 65 (194)
++...|..+..++. ....++|.+|+|||||..
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHH
Confidence 34444555555553 236799999999999964
No 99
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.15 E-value=0.027 Score=48.34 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHh-----------------cCCceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLD-----------------NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~-----------------~gk~~I~ESPTGTGKTLS 65 (194)
+|...+..|..++. ....++|.+|+|||||..
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHH
Confidence 35566666666662 346799999999999974
No 100
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.10 E-value=0.019 Score=47.93 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHhcC--CceeeeCCCCCCchHHH
Q psy14272 32 YDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~g--k~~I~ESPTGTGKTLS~ 66 (194)
.-+|.+.+..|..++..+ .+++|.+|+|||||...
T Consensus 39 i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred hhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 345777788999999887 66999999999999653
No 101
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.047 Score=46.36 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCc--eeeeCCCCCCchHHHHH
Q psy14272 34 IQSNFMKNLYYTLDNSKF--GIFESPTGTGKSLSLIC 68 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~gk~--~I~ESPTGTGKTLS~L~ 68 (194)
+|...+..|..++..|.+ ++|.||.|||||....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 477888899999998876 99999999999965443
No 102
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.83 E-value=0.027 Score=46.06 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 33 DIQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
-+|...+..|..++..+. +++|.||+|||||...
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHH
Confidence 356777888888887764 6999999999999643
No 103
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.80 E-value=0.026 Score=46.43 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcC-----------CceeeeCCCCCCchHHH
Q psy14272 34 IQSNFMKNLYYTLDNS-----------KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~g-----------k~~I~ESPTGTGKTLS~ 66 (194)
+|...|..|..++..+ .+++|.+|+|||||...
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 5666667777777653 47899999999999654
No 104
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.72 E-value=0.029 Score=51.95 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
-+|.+.+..+..++..+.+++|.+|+|||||..
T Consensus 25 vGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 356677888888888899999999999999964
No 105
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.64 E-value=0.064 Score=43.59 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 37 NFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 37 e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
.+...+..+...+..++|.+|+|||||..
T Consensus 17 ~~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 17 EVLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 33444444455678899999999999953
No 106
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.62 E-value=0.1 Score=44.62 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhc-----CCceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLDN-----SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~-----gk~~I~ESPTGTGKTLS 65 (194)
.+...+..+..++.. +..++|-+|||||||.-
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHH
Confidence 566666677777775 57899999999999964
No 107
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.58 E-value=0.025 Score=47.26 Aligned_cols=39 Identities=31% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--cCCceeeeCCCCCCchHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLD--NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~--~gk~~I~ESPTGTGKTLS 65 (194)
++|.-.-+|..++..+..++. ....++|.+|+|||||..
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHH
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHH
Confidence 444433344445555444443 346799999999999964
No 108
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.46 E-value=0.061 Score=50.34 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.-+.|.+.+..+ + .+.+.++.||+|||||..+..- +.++.
T Consensus 181 ln~~Q~~av~~~---l-~~~~~li~GppGTGKT~~~~~~-i~~l~ 220 (624)
T 2gk6_A 181 LNHSQVYAVKTV---L-QRPLSLIQGPPGTGKTVTSATI-VYHLA 220 (624)
T ss_dssp CCHHHHHHHHHH---H-TCSEEEEECCTTSCHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHH---h-cCCCeEEECCCCCCHHHHHHHH-HHHHH
Confidence 458899866654 3 3678999999999999875444 44443
No 109
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.45 E-value=0.075 Score=43.73 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
|-.|+.+.+ .|..++..+.++++.+|.|+|||.-
T Consensus 14 ~~gR~~el~---~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 14 IFDREEESR---KLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp SCSCHHHHH---HHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred cCChHHHHH---HHHHHHhcCCeEEEECCCcCCHHHH
Confidence 445666665 4555566678999999999999953
No 110
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.25 E-value=0.034 Score=45.40 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=14.6
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
...++|.+|+|||||..
T Consensus 51 ~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CSEEEEESSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46799999999999964
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.25 E-value=0.079 Score=41.11 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhc--CCceeeeCCCCCCchHH
Q psy14272 35 QSNFMKNLYYTLDN--SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 35 Q~e~M~~I~~~L~~--gk~~I~ESPTGTGKTLS 65 (194)
+...+..+..++.. +..++|.+|+|||||..
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 36 NDELIGALKSAASGDGVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp CHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 35666677777764 57899999999999964
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.12 E-value=0.1 Score=48.84 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhhhhh
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHKI 79 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~~ 79 (194)
++..-+.|.+.+..+. .+.++++.+|.|||||.. +..++..+...+.
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~g~ 233 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTT-TKAVADLAESLGL 233 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHH-HHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHH-HHHHHHHHHhcCC
Confidence 6667789998766653 568999999999999965 4444555544443
No 113
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.94 E-value=0.082 Score=44.36 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHHhcCC---ceeeeCCCCCCchHHH
Q psy14272 31 AYDIQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLSL 66 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk---~~I~ESPTGTGKTLS~ 66 (194)
..-+|...+..+..++..+. .++|.||.|||||...
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 34457777788888887775 3789999999999653
No 114
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.86 E-value=0.036 Score=46.52 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHhcC-------CceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYTLDNS-------KFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~g-------k~~I~ESPTGTGKTLS 65 (194)
.-+|...|..|..++... ..++|.+|+|||||..
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred hCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 345666677777777542 4799999999999964
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.85 E-value=0.057 Score=45.07 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHh------cCCceeeeCCCCCCchHH
Q psy14272 33 DIQSNFMKNLYYTLD------NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~------~gk~~I~ESPTGTGKTLS 65 (194)
.++..-+..|..+|. .+..++|-||+|||||..
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHH
Confidence 445555556666662 346799999999999964
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.067 Score=46.87 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcC--CceeeeCCCCCCchHHHH
Q psy14272 38 FMKNLYYTLDNS--KFGIFESPTGTGKSLSLI 67 (194)
Q Consensus 38 ~M~~I~~~L~~g--k~~I~ESPTGTGKTLS~L 67 (194)
+...|..++..+ ..++|-+|+|||||.+.-
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 334566666544 678999999999997643
No 117
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.39 E-value=0.093 Score=47.44 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 34 IQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.+...+..+ ....+.+++|-+|||+|||-. |-.++.++..
T Consensus 154 ~~~~~L~~l--~~~~ggii~I~GpnGSGKTTl-L~allg~l~~ 193 (418)
T 1p9r_A 154 HNHDNFRRL--IKRPHGIILVTGPTGSGKSTT-LYAGLQELNS 193 (418)
T ss_dssp HHHHHHHHH--HTSSSEEEEEECSTTSCHHHH-HHHHHHHHCC
T ss_pred HHHHHHHHH--HHhcCCeEEEECCCCCCHHHH-HHHHHhhcCC
Confidence 455555555 234567899999999999953 4444555543
No 118
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.78 E-value=0.11 Score=44.13 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 39 MKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 39 M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
+..+..+......++|.+|||||||+.
T Consensus 15 ~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 15 LNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 333433344567899999999999964
No 119
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.68 E-value=0.089 Score=43.25 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCceeeeCCCCCCchHHH
Q psy14272 49 SKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~ 66 (194)
...++|.+|+|||||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999643
No 120
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.57 E-value=0.22 Score=39.64 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
++...+.+..+...+.. ...++|.+|+|||||..
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHH
Confidence 34455555555554432 24578999999999964
No 121
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.56 E-value=0.13 Score=43.19 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 39 MKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 39 M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
+..|. +..|.+++|-+|||+|||-
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHH
T ss_pred HHHHh--hCCCCEEEEECCCCccHHH
Confidence 34443 6788899999999999984
No 122
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.56 E-value=0.097 Score=42.36 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=13.6
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
..++|.+|+|||||..
T Consensus 45 ~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLL 60 (268)
T ss_dssp SCCCCBCSSCSSHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 4588999999999964
No 123
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.39 E-value=0.097 Score=47.42 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.1
Q ss_pred CCCCHHHHHHH---HHHHHHHhcCCc--eeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFM---KNLYYTLDNSKF--GIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M---~~I~~~L~~gk~--~I~ESPTGTGKTLS 65 (194)
|.-+-+|...+ ..+..++..+.. +||.+|+|||||..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL 66 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHH
Confidence 44556788888 788888888864 99999999999964
No 124
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.34 E-value=0.18 Score=49.10 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.-+.|.+.+..+ + .+.+.++.||.|||||..+.. ++.++..
T Consensus 357 Ln~~Q~~Av~~~---l-~~~~~lI~GppGTGKT~ti~~-~i~~l~~ 397 (800)
T 2wjy_A 357 LNHSQVYAVKTV---L-QRPLSLIQGPPGTGKTVTSAT-IVYHLAR 397 (800)
T ss_dssp CCHHHHHHHHHH---H-TSSEEEEECCTTSCHHHHHHH-HHHHHHT
T ss_pred CCHHHHHHHHHh---c-cCCeEEEEcCCCCCHHHHHHH-HHHHHHH
Confidence 458898866554 3 357899999999999987544 4454443
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.29 E-value=0.15 Score=44.54 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 40 KNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 40 ~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
..|.-++..|..++|-+|||+|||-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHH
Confidence 6777778899999999999999984
No 126
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.27 E-value=0.21 Score=47.31 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCC-ceeeeCCCCCCchHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSK-FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk-~~I~ESPTGTGKTLS~L 67 (194)
-||.|.+.|-..+..+...+..|. ..++.+.||||||+.+.
T Consensus 5 ~~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 5 RGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA 46 (664)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH
Confidence 468899999999999999998874 46688999999998654
No 127
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.16 Score=49.45 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.-+.|.+.+..+ + .+.+.++.||.|||||..+..- +.++.
T Consensus 361 Ln~~Q~~Av~~~---l-~~~~~lI~GppGTGKT~~i~~~-i~~l~ 400 (802)
T 2xzl_A 361 LNSSQSNAVSHV---L-QRPLSLIQGPPGTGKTVTSATI-VYHLS 400 (802)
T ss_dssp CCHHHHHHHHHH---T-TCSEEEEECSTTSSHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHH---h-cCCCEEEECCCCCCHHHHHHHH-HHHHH
Confidence 458999866554 3 3668999999999999875443 44443
No 128
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.96 E-value=0.13 Score=42.09 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 34 IQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
+|...+..+..++..+. +++|.||+|+|||...
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 56677778888888764 5999999999999643
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.96 E-value=0.17 Score=42.20 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---ceeeeCCCCCCchHHHH
Q psy14272 30 DAYDIQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 30 ~py~iQ~e~M~~I~~~L~~gk---~~I~ESPTGTGKTLS~L 67 (194)
+-.-+|...+..|..++..+. .+++.+|+|||||...-
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 334467777888888998764 45777889999997543
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.91 E-value=0.16 Score=41.76 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.4
Q ss_pred CceeeeCCCCCCchHHH
Q psy14272 50 KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~ 66 (194)
..++|.+|+|||||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999654
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.67 E-value=0.18 Score=42.28 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.1
Q ss_pred ceeeeCCCCCCchHHH
Q psy14272 51 FGIFESPTGTGKSLSL 66 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~ 66 (194)
+++|.||+|||||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 132
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.67 E-value=0.13 Score=44.80 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHh--------------cCCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLD--------------NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~--------------~gk~~I~ESPTGTGKTLS 65 (194)
|.-.-+|...++.|...+. ....++|.+|+|||||+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 4444566677777776662 236799999999999964
No 133
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.64 E-value=0.24 Score=39.94 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
++.+.+-+..+...+.. ...++|.+|+|||||..
T Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 17 CDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHH
Confidence 45555555555554432 34588999999999953
No 134
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.62 E-value=0.28 Score=41.07 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcC----CceeeeCCCCCCchHH
Q psy14272 37 NFMKNLYYTLDNS----KFGIFESPTGTGKSLS 65 (194)
Q Consensus 37 e~M~~I~~~L~~g----k~~I~ESPTGTGKTLS 65 (194)
..+..+...+... ..++|-||+|||||..
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHH
Confidence 3344455555443 5799999999999954
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.41 E-value=0.17 Score=42.54 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=14.8
Q ss_pred CCceeeeCCCCCCchHHH
Q psy14272 49 SKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~ 66 (194)
...++|.+|+|||||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999643
No 136
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.37 E-value=0.18 Score=45.44 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~--gk~~I~ESPTGTGKTLS~ 66 (194)
+.|--+|...|..+...|.. ..+++|.+|+|||||...
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 44555677788888888854 367899999999999753
No 137
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.12 E-value=0.25 Score=45.96 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHH
Q psy14272 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~ 66 (194)
-.|...+..|..++..+.+++|.+|+|||||..+
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 3678888999999999999999999999999643
No 138
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.05 E-value=0.31 Score=46.16 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=36.9
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHhcCC-ceeeeCCCCCCchHHH
Q psy14272 23 SEFPFPFDAYDIQSNFMKNLYYTLDNSK-FGIFESPTGTGKSLSL 66 (194)
Q Consensus 23 ~~~~fPy~py~iQ~e~M~~I~~~L~~gk-~~I~ESPTGTGKTLS~ 66 (194)
....-||.|+.-|...+..+...|..|. ..++-+.||+|||+.+
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~ 49 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV 49 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred ceeecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH
Confidence 4466789999999999999999998874 4667899999999864
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.97 E-value=0.2 Score=41.65 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=22.6
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
-..|.+.++-+|+|+|||.++|-.+..+..
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 356789999999999999887766555543
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.95 E-value=0.22 Score=46.10 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 38 FMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 38 ~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
++..|.-++..|.+++|-+|||+|||-. |-.++.++
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTl-L~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTT-LNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHH-HHHHGGGS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 4556667788899999999999999943 33333444
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.84 E-value=0.29 Score=43.20 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=20.7
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
...+++++|-+|||+|||-. |-.++.++..
T Consensus 120 ~~~~g~i~I~GptGSGKTTl-L~~l~g~~~~ 149 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTT-LAAMLDYLNN 149 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHH-HHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHH-HHHHHhcccC
Confidence 34567899999999999853 3344455544
No 142
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.81 E-value=0.15 Score=48.39 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCC-----------ceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLDNSK-----------FGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~gk-----------~~I~ESPTGTGKTLS 65 (194)
+|...|..|..++.... +++|.+|||||||..
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 537 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHH
Confidence 46777777777776421 599999999999964
No 143
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=89.77 E-value=0.16 Score=45.32 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=30.6
Q ss_pred cCCC--CCCCHHHHHHHHH-----HHHHHhcCCc--eeeeCCCCCCchHHHH
Q psy14272 25 FPFP--FDAYDIQSNFMKN-----LYYTLDNSKF--GIFESPTGTGKSLSLI 67 (194)
Q Consensus 25 ~~fP--y~py~iQ~e~M~~-----I~~~L~~gk~--~I~ESPTGTGKTLS~L 67 (194)
|.|. |.|...|.++... |..+|.+|.+ ++.-+.||||||.+.+
T Consensus 52 F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp EECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred EEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 4444 5677788887665 3355666755 4778999999999874
No 144
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.73 E-value=0.42 Score=42.67 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcC----CceeeeCCCCCCchHHH
Q psy14272 35 QSNFMKNLYYTLDNS----KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 35 Q~e~M~~I~~~L~~g----k~~I~ESPTGTGKTLS~ 66 (194)
..+.+..+...+..+ ..++|.+|+|||||...
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 333333444555554 46999999999999643
No 145
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.69 E-value=0.19 Score=47.75 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcC--CceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~g--k~~I~ESPTGTGKTLS 65 (194)
+.|.-+|...|+.+..+|... .+++|.+|+|||||..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHH
Confidence 445667888888999988653 5899999999999974
No 146
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.69 E-value=0.18 Score=43.64 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 37 NFMKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 37 e~M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
.....|.-++..|+++++-+|||+|||-
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 3566777778889999999999999994
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.56 E-value=0.23 Score=41.63 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=14.6
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
+..++|.+|+|||||+.
T Consensus 49 ~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CSEEEEECSSSSSHHHH
T ss_pred CceEEEECCCCcCHHHH
Confidence 46789999999999964
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.46 E-value=0.12 Score=39.79 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=15.8
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.+++|-+|+|+|||-
T Consensus 4 m~~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTS 22 (205)
T ss_dssp -CCCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECcCCCCHHH
Confidence 3467889999999999984
No 149
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.45 E-value=0.27 Score=42.15 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
...++|.+|+|||||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 35799999999999964
No 150
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.10 E-value=0.27 Score=44.68 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhc-------------------CCceeeeCCCCCCchHHH
Q psy14272 34 IQSNFMKNLYYTLDN-------------------SKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~-------------------gk~~I~ESPTGTGKTLS~ 66 (194)
+|...+..|..+|.. ...++|.+|+|||||...
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 456667777777764 257999999999999653
No 151
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.08 E-value=0.23 Score=42.83 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=14.5
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
...++|.+|+|||||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36789999999999964
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.96 E-value=0.21 Score=42.29 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHh----------c----CCceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLD----------N----SKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~----------~----gk~~I~ESPTGTGKTLS~ 66 (194)
|.-..+|...++.|...+. . ...++|.+|+|||||+..
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4444556666666666662 1 245899999999999643
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.89 E-value=0.52 Score=52.73 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
+-|..-=..+...+..+|..++.+++.||||||||..
T Consensus 1284 lVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1284 VIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred eecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 4477655566666777788999999999999999953
No 154
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.84 E-value=0.14 Score=39.31 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.8
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.+++|.+|+|+|||-
T Consensus 3 i~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp -CCCCEEEEECSTTSCHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3568899999999999984
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.83 E-value=0.23 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhc------CCceeeeCCCCCCchHH
Q psy14272 35 QSNFMKNLYYTLDN------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 35 Q~e~M~~I~~~L~~------gk~~I~ESPTGTGKTLS 65 (194)
+..-+..|..++.. +..++|-+|+|||||..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHH
Confidence 33344455555543 46799999999999964
No 156
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.58 E-value=0.55 Score=51.70 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
+-|..--..+.-.+..++..++.+++.||||||||..
T Consensus 1247 iVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1247 VIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred eEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHH
Confidence 3477666666667777788999999999999999974
No 157
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.56 E-value=0.39 Score=40.39 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcC---CceeeeCCCCCCchHHH
Q psy14272 37 NFMKNLYYTLDNS---KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 37 e~M~~I~~~L~~g---k~~I~ESPTGTGKTLS~ 66 (194)
.|+..+...+..- ..++|-+|.|||||...
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3466776666642 25899999999999654
No 158
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=88.51 E-value=0.34 Score=44.18 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.-+.|.+.+.. .++.+++.||.|||||.+++.-+...+.
T Consensus 10 Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~ 48 (647)
T 3lfu_A 10 LNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMS 48 (647)
T ss_dssp CCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34788885542 3578899999999999887666444443
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.39 E-value=0.3 Score=41.62 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcC-------CceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLDNS-------KFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~g-------k~~I~ESPTGTGKTLS 65 (194)
+|......|..++..+ .+++|-+|+|+|||..
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTL 67 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHH
Confidence 3445556666666544 6899999999999853
No 160
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.15 E-value=0.18 Score=47.58 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhc---C--------CceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLDN---S--------KFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~---g--------k~~I~ESPTGTGKTLS 65 (194)
+|.+.+..|..++.. | ..++|.+|||||||..
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHH
Confidence 455666666666643 1 2589999999999964
No 161
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.15 E-value=0.55 Score=40.42 Aligned_cols=31 Identities=13% Similarity=-0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcC----CceeeeCCCCCCchHHHH
Q psy14272 37 NFMKNLYYTLDNS----KFGIFESPTGTGKSLSLI 67 (194)
Q Consensus 37 e~M~~I~~~L~~g----k~~I~ESPTGTGKTLS~L 67 (194)
.|...++.+|... ..++|-+|.|||||+-..
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4556788888754 258999999999997544
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.10 E-value=0.19 Score=38.90 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|++++|-+|+|+|||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999984
No 163
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.87 E-value=0.17 Score=48.96 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcC-----------CceeeeCCCCCCchHH
Q psy14272 34 IQSNFMKNLYYTLDNS-----------KFGIFESPTGTGKSLS 65 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~g-----------k~~I~ESPTGTGKTLS 65 (194)
+|...|..|..++... ..++|.+|||||||..
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTEL 604 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHH
Confidence 4566777777777542 3689999999999964
No 164
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.85 E-value=0.28 Score=43.18 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=20.7
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+..|++++|-+|||+|||-. |-.++.++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl-l~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT-IASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH-HHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH-HHHHHhhcCc
Confidence 45678899999999999843 3333444443
No 165
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.82 E-value=0.19 Score=39.79 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.2
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|.+++|-+|+|+|||-
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 57889999999999984
No 166
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.79 E-value=0.18 Score=38.52 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHhcCCceeeeCCCCCCchH
Q psy14272 45 TLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTL 64 (194)
.+..+.+++|.+|.|+|||-
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGT 27 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34567889999999999984
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.77 E-value=0.36 Score=41.41 Aligned_cols=35 Identities=6% Similarity=-0.071 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCC--ceeeeCCCCCCchHHHHH
Q psy14272 34 IQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~gk--~~I~ESPTGTGKTLS~L~ 68 (194)
+|.+.+..+...+.+++ +.+|.+|.|+|||-...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 47778889999998875 789999999999754443
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.42 E-value=0.36 Score=37.24 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.2
Q ss_pred HHhcCCceeeeCCCCCCchHHHHH
Q psy14272 45 TLDNSKFGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTLS~L~ 68 (194)
.+..|.++++-+|+|+|||.-+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHH
Confidence 345678899999999999954333
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.28 E-value=0.48 Score=38.80 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
|-.|..+.+ .|.. +.. .+++|.+|.|+|||--
T Consensus 15 ~~gR~~el~---~L~~-l~~-~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 15 FFDREKEIE---KLKG-LRA-PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SCCCHHHHH---HHHH-TCS-SEEEEEESTTSSHHHH
T ss_pred hcChHHHHH---HHHH-hcC-CcEEEECCCCCCHHHH
Confidence 445666655 4444 555 6899999999999953
No 170
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.28 E-value=0.32 Score=38.16 Aligned_cols=30 Identities=23% Similarity=0.101 Sum_probs=20.2
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
..|.++++.|++|+|||.-.+--+...+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~ 57 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEE 57 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 346899999999999995433333333333
No 171
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.20 E-value=0.21 Score=38.21 Aligned_cols=17 Identities=29% Similarity=0.351 Sum_probs=15.4
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+..++|-+|+|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68889999999999985
No 172
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=87.14 E-value=0.26 Score=43.72 Aligned_cols=45 Identities=33% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCccCCC--CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 22 PSEFPFP--FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 22 ~~~~~fP--y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
...|.|- |.|...|.++...+ .+.+-+|. -++.-+.||||||.+.
T Consensus 60 ~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 60 QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445555 56877888877653 23333343 3556899999999986
No 173
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.10 E-value=0.32 Score=38.12 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=20.9
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
|..|.++++-+|+|+|||.-.+.-+...+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999975444434433
No 174
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.97 E-value=0.3 Score=40.90 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.2
Q ss_pred CCceeeeCCCCCCch
Q psy14272 49 SKFGIFESPTGTGKS 63 (194)
Q Consensus 49 gk~~I~ESPTGTGKT 63 (194)
+..++|-+|||+|||
T Consensus 34 g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 34 GLGVLITGDSGVGKS 48 (205)
T ss_dssp TEEEEEECCCTTTTH
T ss_pred CEEEEEECCCCCCHH
Confidence 566889999999997
No 175
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.62 E-value=0.34 Score=39.51 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.0
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
..++|.+|+|||||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5699999999999964
No 176
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.54 E-value=0.61 Score=51.36 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHH
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~ 66 (194)
.+.|-+.+..-+-.+|+++.....+++-||||+|||.++
T Consensus 902 ~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 902 GFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 455667777777788999988888999999999999764
No 177
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=86.49 E-value=0.58 Score=41.53 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=28.8
Q ss_pred ccCCC--CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 24 EFPFP--FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 24 ~~~fP--y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
.|.|- |.|-..|.++...+ .+.+-+|. .++.-++||||||.+.
T Consensus 45 ~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 45 SFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp EEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred EEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34444 56777888877654 23333453 3556899999999997
No 178
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.41 E-value=0.24 Score=36.19 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=15.2
Q ss_pred CceeeeCCCCCCchHHHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICGIL 71 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al 71 (194)
.+++|.+|+|+|||- ++-.|
T Consensus 2 ~~I~l~G~~GsGKsT--~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSE--FAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHH--HHHHH
T ss_pred cEEEEECCCCCCHHH--HHHHH
Confidence 368899999999994 44444
No 179
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.90 E-value=1.7 Score=34.80 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHhc-----------CCceeeeCCCCCCchH
Q psy14272 31 AYDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSL 64 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~-----------gk~~I~ESPTGTGKTL 64 (194)
-++.+..-+..+...+.. .+-++|.+|+|||||.
T Consensus 20 g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 20 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 345555555555544432 1237899999999995
No 180
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=85.76 E-value=0.66 Score=43.20 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.-+.|.+.+.. .++.+++.|+.|||||.+++.-+...+..
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~ 42 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRG 42 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 34778885543 35788999999999999877765555544
No 181
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=85.75 E-value=0.86 Score=42.26 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
.||.++|.|..+|..+. ....+++..|-|+|||.....-++.++
T Consensus 160 ~~~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~ 203 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFV 203 (592)
T ss_dssp BBCCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHH
Confidence 67889999999998872 357799999999999986554444333
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.72 E-value=0.3 Score=38.16 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.3
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..+++++|.+|+|+|||-
T Consensus 22 ~~~~~~i~l~G~~GsGKsT 40 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTT 40 (199)
T ss_dssp --CCCEEEEECCTTSCHHH
T ss_pred cCCCCEEEEEcCCCCCHHH
Confidence 3467899999999999984
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.64 E-value=0.29 Score=41.00 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHH-hcC--CceeeeCCCCCCchHHH
Q psy14272 34 IQSNFMKNLYYTL-DNS--KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 34 iQ~e~M~~I~~~L-~~g--k~~I~ESPTGTGKTLS~ 66 (194)
+|...+..+..++ ..+ .+++|-||+|+|||..+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHH
Confidence 5667777888877 554 35899999999999654
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.48 E-value=0.36 Score=41.74 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.0
Q ss_pred CceeeeCCCCCCchHHH
Q psy14272 50 KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~ 66 (194)
..++|.+|+|||||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45889999999999643
No 185
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.47 E-value=0.3 Score=38.56 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=13.7
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|+.++|-+|+|+|||-
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999984
No 186
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.45 E-value=0.3 Score=36.75 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=14.2
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.+++|.+|.|+|||-
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5689999999999994
No 187
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.43 E-value=0.38 Score=36.52 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=16.1
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..+.+++|.+|.|+|||-
T Consensus 6 m~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH
T ss_pred CcCCCEEEEECCCCCCHHH
Confidence 4456789999999999994
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.28 E-value=0.58 Score=39.88 Aligned_cols=16 Identities=38% Similarity=0.438 Sum_probs=13.9
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+.++|.+|+|||||+.
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5688999999999964
No 189
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.11 E-value=0.4 Score=41.98 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.8
Q ss_pred CCceeeeCCCCCCchHHH
Q psy14272 49 SKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~ 66 (194)
..++++-||||+|||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 468999999999999975
No 190
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.07 E-value=0.23 Score=39.58 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=12.1
Q ss_pred hcCCceeeeCCCCCCchHH
Q psy14272 47 DNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS 65 (194)
..|.++.|-+|+|+|||-.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4578899999999999843
No 191
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.97 E-value=0.28 Score=38.42 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.3
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..+.+++|.+|+|+|||-
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 4567899999999999984
No 192
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.63 E-value=0.4 Score=43.30 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHH---hcCC--ceeeeCCCCCCchHHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTL---DNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L---~~gk--~~I~ESPTGTGKTLS~L 67 (194)
|.|-..|.++...|...+ -+|. -++.-+.||||||.+.+
T Consensus 116 F~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 116 FDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred ECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 667777877766654333 2453 35568999999999973
No 193
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.52 E-value=0.29 Score=37.53 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+..++|++|.|+|||-
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46789999999999984
No 194
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.44 E-value=0.39 Score=38.54 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=15.6
Q ss_pred HHHHHhcCCceeeeCCCCCCchH
Q psy14272 42 LYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 42 I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
|--.+..|.++.|-+|+|+|||-
T Consensus 16 isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp ------CCCCEEEECSTTSSHHH
T ss_pred CceecCCCCEEEEECCCCCCHHH
Confidence 33345678999999999999983
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.43 E-value=0.56 Score=41.94 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHh--------------cCCceeeeCCCCCCchHH
Q psy14272 33 DIQSNFMKNLYYTLD--------------NSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~--------------~gk~~I~ESPTGTGKTLS 65 (194)
-++...+..|..++. ..+.++|.+|+|||||+.
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 345555666665552 125689999999999964
No 196
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.37 E-value=0.45 Score=37.31 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=19.8
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGIL 71 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al 71 (194)
|..|.+++|-+|+|+|||.-+++-+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44578999999999999975554443
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.36 E-value=0.57 Score=36.77 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.3
Q ss_pred HHhcCCceeeeCCCCCCchHHHHH
Q psy14272 45 TLDNSKFGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTLS~L~ 68 (194)
.+..|.++.+-+|+|+|||--+.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 456789999999999999964443
No 198
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=84.21 E-value=0.47 Score=41.99 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHh---cCC--ceeeeCCCCCCchHHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLD---NSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~---~gk--~~I~ESPTGTGKTLS~L 67 (194)
|.|-..|.++...|...+. +|. -++.-+.||||||.+.+
T Consensus 60 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 60 FDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp ECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5577788888777655443 343 35668999999999873
No 199
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.12 E-value=0.39 Score=36.46 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=14.0
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
.+++++.+|+|+|||-
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 5678999999999984
No 200
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.97 E-value=0.24 Score=37.73 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.3
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++++-+|+|+|||-
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 3568889999999999984
No 201
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.94 E-value=0.7 Score=38.97 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhc------CCceeeeCCCCCCchH
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDN------SKFGIFESPTGTGKSL 64 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~------gk~~I~ESPTGTGKTL 64 (194)
+|.+..++..+=..+...|.. +..+||-||.|+|||-
T Consensus 6 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKST 48 (287)
T 1gvn_B 6 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTS 48 (287)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHH
T ss_pred CCCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHH
Confidence 455655555444444444432 3568999999999984
No 202
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.83 E-value=0.41 Score=37.65 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.8
Q ss_pred HHhcCCceeeeCCCCCCchH
Q psy14272 45 TLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTL 64 (194)
.+..|.++.|-+|+|+|||-
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 46789999999999999984
No 203
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=83.83 E-value=0.45 Score=42.73 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=29.8
Q ss_pred cCCC--CCCCHHHHHHHHHHHHHHh---cCC--ceeeeCCCCCCchHHHH
Q psy14272 25 FPFP--FDAYDIQSNFMKNLYYTLD---NSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 25 ~~fP--y~py~iQ~e~M~~I~~~L~---~gk--~~I~ESPTGTGKTLS~L 67 (194)
|.|- |.|...|.++...|...+. +|. -++.-+.||||||.+.+
T Consensus 85 F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 85 FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp EECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred eeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4444 5577889888877654443 342 35568999999999873
No 204
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=83.73 E-value=0.32 Score=43.58 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHH---HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNL---YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I---~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|...|.++...+ .+.+-+|. -++.-+.||||||.+.
T Consensus 55 f~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 55 FDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp ECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred ECCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 56777888776543 22333453 3555899999999997
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.56 E-value=0.75 Score=43.36 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~--gk~~I~ESPTGTGKTLS 65 (194)
|.+.-++...+..+.+.|.. +..++|.+|+|||||..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHH
Confidence 34444566677788888864 46799999999999964
No 206
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.53 E-value=0.79 Score=37.38 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=20.1
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.|..++||+|.|+|||-. +-....|+...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~-~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA-RNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHH-HHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHcC
Confidence 467889999999999843 233345665544
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.52 E-value=0.58 Score=36.04 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.2
Q ss_pred HhcCCceeeeCCCCCCchHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSL 66 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~ 66 (194)
|..|.++++-+|+|+|||.-.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHH
Confidence 446789999999999999543
No 208
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=83.48 E-value=0.75 Score=37.03 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=22.3
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
..|++.++-+|.|+|||.++|--+..+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3468899999999999988776655554
No 209
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.44 E-value=0.48 Score=39.13 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 39 MKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 39 M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
++.|.-.|..|.++++-+|+|+|||.-+++-+....
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345554567789999999999999965544443333
No 210
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.42 E-value=0.45 Score=36.78 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=13.6
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.+++|-+|+|+|||-
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4578899999999994
No 211
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=83.41 E-value=0.43 Score=38.99 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.2
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|+.++|-+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 57899999999999984
No 212
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.36 E-value=0.31 Score=36.95 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.6
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|..++|.+|.|||||-
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45678999999999984
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.25 E-value=0.72 Score=44.55 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcC--CceeeeCCCCCCchHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLS 65 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~~g--k~~I~ESPTGTGKTLS 65 (194)
|+|.-++.+.+..+.+.|..+ ..++|.+|+|||||..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHH
Confidence 455666778888888888764 4689999999999964
No 214
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.20 E-value=0.42 Score=35.33 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.5
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
+++|.+|.|+|||-
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999984
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.07 E-value=0.37 Score=44.22 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=14.0
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
..++|.+|+|||||+.
T Consensus 239 ~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLI 254 (489)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CcEEEECcCCCCHHHH
Confidence 5689999999999974
No 216
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=83.03 E-value=0.32 Score=45.59 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=13.6
Q ss_pred ceeeeCCCCCCchHH
Q psy14272 51 FGIFESPTGTGKSLS 65 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS 65 (194)
+++|.+|+|||||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 799999999999963
No 217
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=82.97 E-value=0.47 Score=42.00 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHh---cCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNLYYTLD---NSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~---~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|-..|.++...|...+. +|. -++.-+.||||||.+.
T Consensus 61 f~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred ECCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5677788887777655443 343 3556899999999987
No 218
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=82.94 E-value=0.86 Score=35.90 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.7
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
.|.+.++-+|.|+|||..++--+..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367889999999999987765554444
No 219
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.92 E-value=0.37 Score=42.85 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=14.0
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
++++||-+|||+|||-
T Consensus 40 ~~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSR 55 (339)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4689999999999994
No 220
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.89 E-value=0.3 Score=37.58 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.2
Q ss_pred hcCCceeeeCCCCCCchHH
Q psy14272 47 DNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS 65 (194)
..|.++.+-+|+|+|||--
T Consensus 7 ~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp ESSEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 4678899999999999853
No 221
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.87 E-value=0.57 Score=39.32 Aligned_cols=16 Identities=25% Similarity=0.136 Sum_probs=13.0
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
..++|.+|+|||||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577889999999963
No 222
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=82.74 E-value=0.59 Score=41.23 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|...|.++...+ .+.+-+|. -++.-++||||||.+.
T Consensus 58 f~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 58 LAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred EecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 56777888776653 33333453 3566899999999986
No 223
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=82.67 E-value=1 Score=45.50 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
..+.|.+.+.. .++.+++.|+-|||||.+++--++..+..
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~ 50 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITA 50 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 57899986543 47789999999999999877665555444
No 224
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.52 E-value=0.77 Score=37.32 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=20.2
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|..++||+|.|+|||-. +--...|+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~-~~~l~~~l~~~ 33 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTN-RDYLAERLRER 33 (213)
T ss_dssp CCEEEEEECSTTSSHHHH-HHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHH-HHHHHHHHHHc
Confidence 577899999999999842 23334566543
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=82.31 E-value=0.55 Score=35.11 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.4
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.+++|-+|.|+|||-
T Consensus 3 ~~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCCEEEECCTTSCHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 35789999999999984
No 226
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.20 E-value=0.48 Score=35.96 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=14.8
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.+++|.+|.|+|||-
T Consensus 10 ~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTT 26 (180)
T ss_dssp CCCCEEEECSTTSSHHH
T ss_pred cCCeEEEEeCCCCCHHH
Confidence 45789999999999995
No 227
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=81.90 E-value=1.6 Score=39.18 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
.||.++|.|..+|..+. ....+++..|-+.|||....+-++.
T Consensus 160 ~p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~ 201 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAH 201 (385)
T ss_dssp EECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHH
Confidence 67889999999998774 3467999999999999865544443
No 228
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.85 E-value=0.44 Score=42.29 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+++++|-+|||+|||-
T Consensus 3 ~~~i~i~GptgsGKt~ 18 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTK 18 (322)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CcEEEEECCCcCCHHH
Confidence 4578899999999994
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.83 E-value=0.47 Score=36.28 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.6
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+..++|++|.|||||-
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 35689999999999984
No 230
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=81.77 E-value=0.82 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=18.1
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.+.+|-+|+|+|||- |+-+|.|+.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 378899999999994 445566654
No 231
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=81.71 E-value=0.56 Score=41.70 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=28.0
Q ss_pred cCCC--CCCCHHHHHHHHH----HHHHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 25 FPFP--FDAYDIQSNFMKN----LYYTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 25 ~~fP--y~py~iQ~e~M~~----I~~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
|.|- |.|...|.++... +.+.+-+|. .++.-+.||||||.+.+
T Consensus 49 f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 49 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp EECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred EeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 4444 5577788877664 233333453 35568999999999873
No 232
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.68 E-value=1.5 Score=36.99 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHH-HHH-h----cCCceee--eCCCCCCchHH
Q psy14272 31 AYDIQSNFMKNLY-YTL-D----NSKFGIF--ESPTGTGKSLS 65 (194)
Q Consensus 31 py~iQ~e~M~~I~-~~L-~----~gk~~I~--ESPTGTGKTLS 65 (194)
-|..+.+.+...+ ..+ . .+..+++ .+|.|+|||..
T Consensus 26 gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 26 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHH
T ss_pred ChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHH
Confidence 4566666554443 332 2 2357888 99999999964
No 233
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.48 E-value=0.97 Score=36.04 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=20.3
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.+++|-+|.|+|||- ++...+.++...+
T Consensus 5 ~~i~i~G~sGsGKTT-l~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTT-LMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHH-HHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHH-HHHHHHHhhHhcC
Confidence 467788999999984 5556666766544
No 234
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=81.44 E-value=0.33 Score=42.71 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHH---HHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNLY---YTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I~---~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|...|.++...|. +.+-+|. -++.-+.||||||.+.
T Consensus 56 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 56 FSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred eCCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 557778887765532 2223453 3556899999999987
No 235
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.43 E-value=0.36 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.5
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.+++|.+|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTT 20 (193)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35678999999999985
No 236
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.31 E-value=0.52 Score=35.11 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=12.9
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.+|.|+|||-
T Consensus 3 ~~I~i~G~~GsGKST 17 (181)
T 1ly1_A 3 KIILTIGCPGSGKST 17 (181)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEecCCCCCHHH
Confidence 368899999999984
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.24 E-value=0.58 Score=35.14 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.9
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.++++-+|.|+|||-
T Consensus 3 ~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4678999999999984
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.23 E-value=0.91 Score=38.71 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCceeeeCCCCCCchHHHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLICGI 70 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~a 70 (194)
+.+++|-+|+|+|||-...+-+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5688889999999996544443
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.19 E-value=0.57 Score=38.18 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=15.7
Q ss_pred HHhcCCceeeeCCCCCCchH
Q psy14272 45 TLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTL 64 (194)
.+..|.+++|-+|+|+|||-
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 45678999999999999984
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.08 E-value=0.74 Score=39.92 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.5
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
++.+|-+|||+|||. |+-|+.|+
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHH
Confidence 578999999999995 45567774
No 241
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=80.86 E-value=0.64 Score=41.28 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|...|.++...+ .+.+-+|. -++.-+.||||||.+.
T Consensus 80 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 80 FDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp ECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 56777888776543 33333453 3566899999999987
No 242
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=80.85 E-value=1.3 Score=41.99 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.-|.|.+.+.. .++.+++.|+.|||||.+++.-+...+.
T Consensus 12 Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~ 50 (724)
T 1pjr_A 12 LNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMA 50 (724)
T ss_dssp SCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45788885443 3568899999999999987766444443
No 243
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.84 E-value=1 Score=35.58 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=18.7
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.+++|-+|+|+|||- ++..++.++..
T Consensus 7 ~~i~i~G~sGsGKTT-l~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTT-LLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHH-HHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHH-HHHHHHHhccc
Confidence 568889999999984 45555555544
No 244
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.76 E-value=1.5 Score=49.11 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHH--HHHHHHH
Q psy14272 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSL--ICGILKW 73 (194)
Q Consensus 27 fPy~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~--L~~al~w 73 (194)
..+.|-|.+..=+-.+|+++.-..-+++-||||+|||-++ |+.+++-
T Consensus 884 ~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~ 932 (3245)
T 3vkg_A 884 RHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ 932 (3245)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTT
T ss_pred cCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456677777777788888877777899999999999875 3344443
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.66 E-value=2.6 Score=34.45 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHhc-----------CCceeeeCCCCCCchHH
Q psy14272 31 AYDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
-++.+..-+..+...+.. .+.++|.+|+|||||..
T Consensus 44 g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 44 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred ChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 345555555555554432 12378999999999953
No 246
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=80.35 E-value=0.82 Score=40.83 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCccCCC--CCCCHHHHHHHHHHH----HHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 22 PSEFPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 22 ~~~~~fP--y~py~iQ~e~M~~I~----~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
+..|.|- |.|...|.++...+. +.+-+|. .++.-+.||||||.+.
T Consensus 50 ~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 50 GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3345554 668888888766542 3333453 3556899999999997
No 247
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=80.33 E-value=0.63 Score=41.37 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHH----HHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 29 FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 29 y~py~iQ~e~M~~I~----~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
|.|...|.++...+. +.+-+|. -++.-+.||||||.+.+
T Consensus 63 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred EeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 567788888776543 2333453 35568999999999874
No 248
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.09 E-value=0.47 Score=35.62 Aligned_cols=14 Identities=43% Similarity=0.639 Sum_probs=12.4
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|++|.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58899999999984
No 249
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.09 E-value=0.58 Score=37.13 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=14.2
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
....++|.+|+|+|||-
T Consensus 6 ~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp -CCEEEEEECTTSSHHH
T ss_pred cCcEEEEECCCCCCHHH
Confidence 45679999999999984
No 250
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.06 E-value=0.76 Score=40.32 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=29.7
Q ss_pred CccCCC--CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 23 SEFPFP--FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 23 ~~~~fP--y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
..|.|- |.|...|.++...+ .+.+-+|. -++.-+.||||||.+.+
T Consensus 44 ~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred EEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 344454 56777888876554 33333453 35668999999999974
No 251
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.04 E-value=0.58 Score=35.20 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.+++|.+|.|||||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999984
No 252
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.02 E-value=0.85 Score=41.62 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.8
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+-++|-+|+|||||+.
T Consensus 216 rGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLL 231 (434)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred CeeEEECcCCCCHHHH
Confidence 4589999999999964
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.98 E-value=0.63 Score=35.36 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=12.3
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 57899999999984
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.94 E-value=0.63 Score=36.04 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHhcCCceeeeCCCCCCchHHHHH
Q psy14272 45 TLDNSKFGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTLS~L~ 68 (194)
.+..|.++.|-+|+|+|||.-+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHH
Confidence 345678999999999999964433
No 255
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.91 E-value=0.59 Score=36.86 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.3
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
....++|.+|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34678999999999984
No 256
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.78 E-value=1.1 Score=34.05 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.9
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.+.+|-+|+|+|||- |+-++.|+.
T Consensus 24 g~~~I~G~NGsGKSt--il~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSS--LLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHH
Confidence 478889999999995 344566654
No 257
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.60 E-value=0.6 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=15.1
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.+++|++|.|||||-
T Consensus 8 ~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCEEEEEESTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 56789999999999984
No 258
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.55 E-value=0.72 Score=35.95 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=15.2
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++++.+|.|+|||-
T Consensus 27 ~~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp -CCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 357899999999999984
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.54 E-value=0.98 Score=35.45 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=19.1
Q ss_pred HHHHHHHHHHh----cCCceeeeCCCCCCch
Q psy14272 37 NFMKNLYYTLD----NSKFGIFESPTGTGKS 63 (194)
Q Consensus 37 e~M~~I~~~L~----~gk~~I~ESPTGTGKT 63 (194)
++++.|.+.+. .|.++.|-+|+|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKS 36 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKS 36 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHH
Confidence 35555555443 4567889999999998
No 260
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=79.52 E-value=0.89 Score=40.60 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=24.7
Q ss_pred HHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 41 ~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.+...|..|..+++-||+|+|||.-.+.-+...+..
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 443445567899999999999996555554444443
No 261
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.50 E-value=1 Score=36.59 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.3
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
....++|.+|.|+|||-
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 44679999999999984
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.46 E-value=1 Score=38.31 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=23.9
Q ss_pred HHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 41 ~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.+..-|..|..+|+-|++|+|||.-.+.-+...+.
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33334556789999999999999654444444444
No 263
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.35 E-value=1 Score=35.85 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=19.0
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.+.+|-+|+|+|||- |+-+|.|+.-.
T Consensus 24 ~~~~I~G~NgsGKSt--il~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSS--LLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHH--HHHHHHHHhcC
Confidence 478889999999995 34556666543
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.30 E-value=1.2 Score=34.78 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=19.9
Q ss_pred HHHHHHHHHhc-----CCceeeeCCCCCCchH
Q psy14272 38 FMKNLYYTLDN-----SKFGIFESPTGTGKSL 64 (194)
Q Consensus 38 ~M~~I~~~L~~-----gk~~I~ESPTGTGKTL 64 (194)
+|..|.+.+.. +.++.+.+|+|+|||-
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTT 37 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHH
Confidence 55566666543 4678899999999984
No 265
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=79.30 E-value=0.64 Score=42.01 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|...|.++...+ .+.+-+|. -++.-+.||||||.+.
T Consensus 73 f~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp ECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred ecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 55777888877643 23333453 3556899999999987
No 266
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.28 E-value=0.51 Score=36.08 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.+++|.++.|+|||-
T Consensus 12 ~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 45789999999999984
No 267
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=79.28 E-value=0.85 Score=41.53 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 29 y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
|.|...|.++...+ .+.+-+|. .++.-+.||||||.+..
T Consensus 129 F~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred EecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 56777888776543 33333453 35568999999999964
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=79.22 E-value=1.7 Score=35.14 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.8
Q ss_pred HHHhcCCceeeeCCCCCCchH
Q psy14272 44 YTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 44 ~~L~~gk~~I~ESPTGTGKTL 64 (194)
+.+..|.++.+-+|+|+|||-
T Consensus 17 ~~i~~Ge~~~liG~nGsGKST 37 (208)
T 3b85_A 17 DAIDTNTIVFGLGPAGSGKTY 37 (208)
T ss_dssp HHHHHCSEEEEECCTTSSTTH
T ss_pred HhccCCCEEEEECCCCCCHHH
Confidence 335789999999999999985
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.18 E-value=0.58 Score=38.52 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.2
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
++++-+|||||||-
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 57899999999984
No 270
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=79.07 E-value=0.68 Score=35.66 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.9
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+..++|+++.|||||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CSCEEEEEESTTSSHHH
T ss_pred cCCEEEEEcCCCCCHHH
Confidence 46789999999999984
No 271
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.06 E-value=0.65 Score=37.25 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.8
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|.++.|++|.|+|||-
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 46789999999999984
No 272
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.06 E-value=1.3 Score=41.23 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.++++-++||+|||..+-+-++..+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~ 194 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYK 194 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999998765555444443
No 273
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.92 E-value=0.97 Score=41.29 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHH-Hhc-----------CCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYT-LDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~-L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
.+.|++-+..+... |.. .+-++|-+|+|||||+.
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 46666655544433 322 25588999999999974
No 274
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.89 E-value=1 Score=36.96 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.9
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGI 70 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~a 70 (194)
|..|.+++|-+|+|+|||.-+++-+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999996554443
No 275
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.83 E-value=2.2 Score=38.02 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=18.8
Q ss_pred HHHHHHHHhc---CCceeeeCCCCCCchHH
Q psy14272 39 MKNLYYTLDN---SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 39 M~~I~~~L~~---gk~~I~ESPTGTGKTLS 65 (194)
...+...... ...++|-||+|+|||.-
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHH
Confidence 3444444444 25799999999999963
No 276
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.83 E-value=0.64 Score=36.55 Aligned_cols=32 Identities=9% Similarity=-0.079 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 28 Py~py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
+....+++... ..+..|.+++|.++.|+|||-
T Consensus 9 ~~~~~~~~r~~-----~~~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 9 ASALTRSERTE-----LRNQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp HHCCCHHHHHH-----HHTSSCEEEEEECSTTSSHHH
T ss_pred ccccCHHHhhc-----ccCCCCCEEEEECCCCCCHHH
Confidence 33444555553 224677889999999999984
No 277
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=78.72 E-value=0.88 Score=40.40 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=28.4
Q ss_pred ccCCC--CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 24 EFPFP--FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 24 ~~~fP--y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
.|.|- |.|...|.++...+ .+.+-+|. .++.-+.||||||.+.
T Consensus 57 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred EeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34444 56778888776542 33333453 3556899999999987
No 278
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=78.65 E-value=0.66 Score=38.39 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=16.9
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
..|..++||+|.|+|||-. +--+..|+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~-~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTH-LQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHH-HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 4678999999999999842 2223345543
No 279
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=78.65 E-value=1.5 Score=36.51 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=20.0
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
.|..++|++|.|+|||-. +--+..|+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~-~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTA-IQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHH-HHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 478899999999999852 22333455543
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=78.51 E-value=0.97 Score=39.24 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 37 NFMKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 37 e~M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
..++.|--.+..|..+.|-+|+|+|||-
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHH
Confidence 3455565566788999999999999983
No 281
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.32 E-value=1.4 Score=40.27 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.9
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+.++|.+|+|||||..
T Consensus 51 ~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 51 KNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5799999999999863
No 282
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.15 E-value=1.1 Score=40.89 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=15.6
Q ss_pred CceeeeCCCCCCchHHHHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~ 72 (194)
+-++|-+|+|||||+. +-+++
T Consensus 207 rGiLL~GPPGtGKT~l--akAiA 227 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML--VKAVA 227 (428)
T ss_dssp CEEEEESCTTTTHHHH--HHHHH
T ss_pred ceEEEECCCCCCHHHH--HHHHH
Confidence 3489999999999964 44444
No 283
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.07 E-value=0.67 Score=40.98 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.1
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|-+|||+|||-
T Consensus 11 ~~i~i~GptgsGKt~ 25 (316)
T 3foz_A 11 KAIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCccCHHH
Confidence 468899999999994
No 284
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.04 E-value=0.76 Score=34.86 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=12.2
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (197)
T 2z0h_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 285
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=77.82 E-value=1.3 Score=35.70 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=17.0
Q ss_pred CceeeeCCCCCCchHHHHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~ 72 (194)
-+.+|.+|.|||||+....-++.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999865443333
No 286
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.64 E-value=0.92 Score=37.94 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhc---CCceeeeCCCCCCchH
Q psy14272 36 SNFMKNLYYTLDN---SKFGIFESPTGTGKSL 64 (194)
Q Consensus 36 ~e~M~~I~~~L~~---gk~~I~ESPTGTGKTL 64 (194)
...++.|.-.+.. |.+++|-+|.|+|||-
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKST 63 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTT 63 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHH
Confidence 3466777666677 8999999999999985
No 287
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.37 E-value=0.91 Score=40.59 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=28.1
Q ss_pred ccCCC--CCCCHHHHHHHHHHH----HHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 24 EFPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 24 ~~~fP--y~py~iQ~e~M~~I~----~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
.|.|- |.|...|.++...+. +.+-+|. -++.-+.||||||.+.+
T Consensus 68 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred EEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 34444 557777887766532 2223343 35568999999999864
No 288
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.35 E-value=0.91 Score=40.70 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=28.4
Q ss_pred ccCCC--CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 24 EFPFP--FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 24 ~~~fP--y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
.|.|- |.|...|.++...+ .+.+-+|. .++.-+.||||||.+.+
T Consensus 69 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp EEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred EEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34444 55777888876653 23333453 35568999999999863
No 289
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=77.25 E-value=0.81 Score=34.72 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.6
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|.+++|.++.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46788999999999984
No 290
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.23 E-value=1.2 Score=40.57 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHH-Hhc-----------CCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYT-LDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~-L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
.+.|++-++.+... |.. .+-++|-+|.|||||+.
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 46676655544433 221 25688999999999974
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=77.21 E-value=0.8 Score=34.44 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.4
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.++++.+|.|+|||-
T Consensus 7 ~g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSA 23 (175)
T ss_dssp TSEEEEEECSTTSCHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 35688999999999984
No 292
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=77.16 E-value=0.99 Score=40.17 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=25.1
Q ss_pred HHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 41 ~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.+...|..|..+++-||+|+|||.-.+.-+...+..
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~ 227 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK 227 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 443445567899999999999996555555555543
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.06 E-value=0.92 Score=35.09 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=13.5
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.+|.|+|||-
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 589999999999984
No 294
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.00 E-value=0.62 Score=42.30 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=26.8
Q ss_pred cCCC--CCCCHHHHHHHHHHH---HHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 25 FPFP--FDAYDIQSNFMKNLY---YTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 25 ~~fP--y~py~iQ~e~M~~I~---~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|- |.|-..|.++...|. +.+-+|. .++.-+.||||||.+.
T Consensus 108 F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 108 FSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp EECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred EeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4444 567777877655433 2223453 3556899999999986
No 295
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=76.90 E-value=0.88 Score=43.30 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHH---HHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 29 FDAYDIQSNFMKNLY---YTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 29 y~py~iQ~e~M~~I~---~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
|.|-..|.++.+.|. +.+-+|. .++.-+.||||||.+.
T Consensus 438 f~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 438 FEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp ECSSCCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 557777877654433 2223453 3455799999999986
No 296
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=76.80 E-value=0.97 Score=35.54 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.8
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+..++|.+|.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4678999999999984
No 297
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.77 E-value=2.6 Score=38.64 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=13.7
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+.++|.+|+|||||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999964
No 298
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=76.60 E-value=1.4 Score=38.11 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 38 FMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 38 ~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.+..|.-.+..+.++.|-+|+|+|||- +|-.++.++.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKST-Ll~~l~g~~~ 80 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKST-TIDALGSLLT 80 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHH-HHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHH-HHHHHHHhhh
Confidence 344443334567788999999999984 3444444443
No 299
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=76.38 E-value=0.85 Score=37.09 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=15.2
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.|..++|++|.|+|||-
T Consensus 25 ~g~~i~i~G~~GsGKsT 41 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTT 41 (229)
T ss_dssp CCEEEEEECCTTSCHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 57889999999999984
No 300
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.22 E-value=1 Score=33.48 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=13.1
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.++.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 468899999999984
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=76.09 E-value=0.72 Score=35.23 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=13.5
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
|.+++|-+|+|+|||-
T Consensus 2 g~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 2 KKLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCcHHH
Confidence 4567899999999984
No 302
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.07 E-value=1.3 Score=40.09 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHHHH
Q psy14272 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 29 y~py~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~L~ 68 (194)
|.|...|.++...+ .+.+-+|. -++.-+.||||||.+..-
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred EecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 56777888776543 33333453 355689999999998643
No 303
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.88 E-value=0.99 Score=33.95 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.3
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
+++|+++.|||||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999984
No 304
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.83 E-value=1.2 Score=37.78 Aligned_cols=24 Identities=33% Similarity=0.722 Sum_probs=19.9
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
++.+|-+|||+|||- |+-+|.|+.
T Consensus 25 g~~~i~G~NGsGKS~--ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKSN--IIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCSTH--HHHHHHHTS
T ss_pred CcEEEECCCCCcHHH--HHHHHHHHh
Confidence 389999999999995 667788874
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.66 E-value=0.86 Score=34.15 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=13.2
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.+|.|||||-
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999985
No 306
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.36 E-value=3 Score=32.18 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhc--CCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 33 DIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 33 ~iQ~e~M~~I~~~L~~--gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
+...+.+..+...+.. -..++|-+++|+||| +++...+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKT-Tl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKT-LLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHH-HHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHH-HHHHHHHHHh
Confidence 3344445555555532 346778899999999 4555555554
No 307
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.36 E-value=1.1 Score=36.11 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.0
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
..+||-||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999984
No 308
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=75.25 E-value=1.1 Score=34.62 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.3
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
..++|.+|.|+|||-
T Consensus 21 ~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGT 35 (201)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 478999999999994
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.06 E-value=1.2 Score=34.36 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.7
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.++++.+|.|||||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 9 KGINILITGTPGTGKTS 25 (184)
T ss_dssp SSCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45789999999999994
No 310
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.01 E-value=0.42 Score=36.89 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=12.4
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
+++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57899999999983
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=74.93 E-value=1 Score=34.66 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=13.2
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.+|.|||||-
T Consensus 16 ~~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 578999999999984
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.87 E-value=1.4 Score=34.18 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.5
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.+++|-+|.|+|||-
T Consensus 23 ~~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKST 40 (200)
T ss_dssp SCCEEEEEECSTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 457889999999999984
No 313
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=74.82 E-value=1.1 Score=39.62 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHH----HHHHhcCCc--eeeeCCCCCCchHHH
Q psy14272 30 DAYDIQSNFMKNL----YYTLDNSKF--GIFESPTGTGKSLSL 66 (194)
Q Consensus 30 ~py~iQ~e~M~~I----~~~L~~gk~--~I~ESPTGTGKTLS~ 66 (194)
.++..|.++...+ .+.+-+|.+ ++.-+.||||||.+.
T Consensus 68 ~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 68 EKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred cccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3556787765544 333334533 456799999999997
No 314
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.73 E-value=1.4 Score=40.89 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=13.9
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+-++|-+|.|||||+.
T Consensus 244 rGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLC 259 (467)
T ss_dssp SEEEECSCTTSSHHHH
T ss_pred CceEeeCCCCCcHHHH
Confidence 5688999999999964
No 315
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=74.68 E-value=1 Score=36.93 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=19.2
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.|..++||+|.|+|||-. +--...|+.
T Consensus 4 ~g~~i~~eG~~g~GKst~-~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ-CNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHH-HHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHhc
Confidence 578999999999999842 223334554
No 316
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=74.60 E-value=2.4 Score=34.98 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=19.1
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.|..++|+++.|+|||-. +-....|+..
T Consensus 20 ~~~~i~~~G~~g~GKst~-~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQ-SHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHH-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 367899999999999842 2223345554
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=74.42 E-value=0.95 Score=33.97 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=10.0
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.+++|.++.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 5 SPIIWINGPFGVGKTH 20 (183)
T ss_dssp CCEEEEECCC----CH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5678999999999984
No 318
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.40 E-value=1.3 Score=37.02 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.4
Q ss_pred eeeeCCCCCCchHH
Q psy14272 52 GIFESPTGTGKSLS 65 (194)
Q Consensus 52 ~I~ESPTGTGKTLS 65 (194)
++|.+|+|||||.-
T Consensus 47 vlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 47 VLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEESSTTSCHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 88999999999963
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=74.40 E-value=1 Score=36.89 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=14.0
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
...++|.|+.|+|||-
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 4678999999999984
No 320
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.33 E-value=2.3 Score=36.67 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=17.3
Q ss_pred cCCceeeeCCCCCCchHHHHHH
Q psy14272 48 NSKFGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~ 69 (194)
.+.++++-+|||+|||..+-+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHH
Confidence 4678999999999999754443
No 321
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=74.28 E-value=1.4 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.622 Sum_probs=16.5
Q ss_pred HHhcCCceeeeCCCCCCchH
Q psy14272 45 TLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTL 64 (194)
.+..|.++++.+|+|+|||.
T Consensus 165 ~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34567889999999999984
No 322
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=74.24 E-value=1.2 Score=35.82 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.+++|.+|.|+|||-
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4689999999999984
No 323
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=74.02 E-value=0.99 Score=34.97 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=14.3
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..+.++.+-+|+|+|||-
T Consensus 4 ~~~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTT 21 (211)
T ss_dssp -CCEEEEEEESTTSSHHH
T ss_pred CCcEEEEEECCCCCCHHH
Confidence 356678889999999984
No 324
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=73.98 E-value=0.97 Score=37.05 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 468899999999999983
No 325
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.92 E-value=1.9 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHH-Hhc-----------CCceeeeCCCCCCchHH
Q psy14272 31 AYDIQSNFMKNLYYT-LDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 31 py~iQ~e~M~~I~~~-L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
=.+.|++-+..+... |.. .+-++|-+|.|||||+.
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHH
Confidence 356777766555443 221 25588999999999974
No 326
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.87 E-value=1.1 Score=36.46 Aligned_cols=17 Identities=29% Similarity=0.147 Sum_probs=14.8
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+..++|+++.|+|||-
T Consensus 23 ~~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKST 39 (263)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 45789999999999994
No 327
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=73.78 E-value=1.3 Score=35.40 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.8
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+..++|++|.|||||-
T Consensus 16 ~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4579999999999984
No 328
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=73.74 E-value=0.99 Score=37.04 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 468899999999999983
No 329
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=73.49 E-value=1 Score=39.67 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=13.2
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.++++-+|||+|||-
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999995
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.47 E-value=1.2 Score=34.68 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=12.0
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|.+|.|||||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46889999999984
No 331
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=73.41 E-value=4.1 Score=35.21 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=18.2
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
+.++.|-+|+|+||| |+|-..+.++.
T Consensus 74 ~~~v~lvG~pgaGKS-TLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKS-TFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHH-HHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHH-HHHHHHHHHhh
Confidence 456788999999999 44555444443
No 332
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=73.16 E-value=1.9 Score=39.74 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=15.0
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
+.+++|-+|+|||||..
T Consensus 108 g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSL 124 (543)
T ss_dssp SCEEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 67899999999999964
No 333
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.70 E-value=0.96 Score=41.28 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=0.0
Q ss_pred CceeeeCCCCCCch
Q psy14272 50 KFGIFESPTGTGKS 63 (194)
Q Consensus 50 k~~I~ESPTGTGKT 63 (194)
++++|-+|||+|||
T Consensus 3 ~~i~i~GptgsGKt 16 (409)
T 3eph_A 3 KVIVIAGTTGVGKS 16 (409)
T ss_dssp EEEEEEECSSSSHH
T ss_pred cEEEEECcchhhHH
No 334
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=72.66 E-value=2 Score=37.40 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=16.5
Q ss_pred ceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 51 FGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
+.+|-+|||+||| ++| -+++|+
T Consensus 25 ~~~i~G~NGaGKT-Tll-~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKS-SLF-EAISFA 46 (365)
T ss_dssp EEEEECCTTSSHH-HHH-HHHHHH
T ss_pred eEEEECCCCCCHH-HHH-HHHHHH
Confidence 7788999999999 333 445655
No 335
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=71.97 E-value=1.2 Score=36.37 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=16.2
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 32 i~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp EETTCCEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999984
No 336
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.96 E-value=1.1 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 32 ~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468899999999999983
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=71.94 E-value=1.3 Score=34.44 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=11.9
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|.+|.|||||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36889999999984
No 338
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=71.91 E-value=1.8 Score=33.53 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.2
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.|-+|.|+|||-
T Consensus 30 i~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp CSSCEEEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3678889999999999983
No 339
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=71.78 E-value=1 Score=36.60 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 28 ~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST 45 (224)
T ss_dssp ETTCEEEEEECTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468889999999999983
No 340
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=71.70 E-value=4.2 Score=37.52 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceeeeCCCCCCchHH
Q psy14272 32 YDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 32 y~iQ~e~M~~I~~~L~~-----------gk~~I~ESPTGTGKTLS 65 (194)
.+.+..-+..+...+.. .+-++|.+|+|||||+.
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHH
Confidence 35555555555555543 13378999999999964
No 341
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=71.30 E-value=2.7 Score=33.44 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=15.4
Q ss_pred eeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 52 GIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 52 ~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
++||++-|+|||-- +--...||...+
T Consensus 3 I~~EG~DGsGKsTq-~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQ-IQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHH-HHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHHCC
Confidence 57888888888742 122234665544
No 342
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=71.21 E-value=1.4 Score=34.75 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=13.6
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+..++|++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 5 KHNLILIGAPGSGKGT 20 (217)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4568999999999984
No 343
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=71.19 E-value=1.2 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.1
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 30 i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred EeCCCEEEEECCCCCCHHH
Confidence 3468899999999999984
No 344
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.16 E-value=1.4 Score=39.13 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.2
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|-+|||||||-
T Consensus 8 ~lI~I~GptgSGKTt 22 (340)
T 3d3q_A 8 FLIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCcCcHHH
Confidence 478899999999984
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=71.14 E-value=1 Score=34.94 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..+.++.+-+|+|+|||-
T Consensus 19 ~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCCEEEEEEESTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 345678899999999984
No 346
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=71.01 E-value=2.3 Score=37.42 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=20.1
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
..+.+.+|-+|+|+|||- |+-++.|+.
T Consensus 24 ~~~~~~~i~G~nG~GKst--ll~ai~~~~ 50 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSN--MMDAISFVL 50 (430)
T ss_dssp TTCSEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHhhh
Confidence 347889999999999995 344466654
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=71.00 E-value=1.4 Score=35.09 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.3
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999984
No 348
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=71.00 E-value=1.2 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.9
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 33 ~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468899999999999994
No 349
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=70.93 E-value=4.3 Score=31.36 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=16.7
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
..++|-++.|+||| |++.-.+.++
T Consensus 39 ~~i~ivG~~gvGKT-tl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKT-LLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHH-HHHHHHHHHH
T ss_pred eEEEEEcCCCCCHH-HHHHHHHHHh
Confidence 34666799999999 5555555554
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.80 E-value=1.5 Score=32.50 Aligned_cols=14 Identities=21% Similarity=-0.066 Sum_probs=12.3
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|.++.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 47899999999984
No 351
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.74 E-value=1.2 Score=36.43 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 30 ~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468899999999999984
No 352
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.66 E-value=2.7 Score=36.30 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=16.1
Q ss_pred CCceeeeCCCCCCchHHHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLICGI 70 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~a 70 (194)
+++++|-+|+|+|||-...+-+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467788999999996544443
No 353
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=70.62 E-value=1.1 Score=36.73 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 26 ~~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKST 43 (243)
T ss_dssp CTTEEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468889999999999994
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=70.45 E-value=1.3 Score=35.65 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 39 MKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 39 M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
++.|.=.+..|.++-+-+|+|+|||-
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKST 40 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKST 40 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHH
Confidence 44444455667788889999999984
No 355
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=70.41 E-value=1.4 Score=34.53 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.+++|.+|.|+|||-
T Consensus 4 ~~~I~i~G~~GSGKST 19 (218)
T 1vht_A 4 RYIVALTGGIGSGKST 19 (218)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578899999999985
No 356
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.16 E-value=1.3 Score=36.83 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.3
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 43 i~~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKST 61 (260)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3468899999999999984
No 357
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=69.99 E-value=2.3 Score=34.60 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.1
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.++++-+|.|+|||-
T Consensus 33 ~~i~l~G~~GsGKST 47 (253)
T 2p5t_B 33 IAILLGGQSGAGKTT 47 (253)
T ss_dssp EEEEEESCGGGTTHH
T ss_pred eEEEEECCCCCCHHH
Confidence 568899999999984
No 358
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.97 E-value=3 Score=35.87 Aligned_cols=21 Identities=24% Similarity=0.012 Sum_probs=15.8
Q ss_pred CCceeeeCCCCCCchHHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~ 69 (194)
+.+++|-+|+|+|||-...+-
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHH
Confidence 357889999999999654443
No 359
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=69.96 E-value=1.3 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.9
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 27 ~~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKST 44 (250)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468899999999999984
No 360
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.74 E-value=2.3 Score=38.34 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 41 ~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.+..-|..|..+|+-|++|+|||.-.+.-+...+..
T Consensus 189 ~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 189 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp HHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred hhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 333345567899999999999997655555555543
No 361
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=69.66 E-value=1.5 Score=35.30 Aligned_cols=16 Identities=50% Similarity=0.839 Sum_probs=14.1
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
|+.++||++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 5678999999999985
No 362
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=69.65 E-value=4.7 Score=36.86 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=21.4
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhhhhhhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYDHKIVG 81 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~~~~~~ 81 (194)
.+++|-+|+|+|||-+...- ..|+...+.++
T Consensus 101 ~vIlivG~~G~GKTTt~~kL-A~~l~~~G~kV 131 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKL-ARYFQKRGYKV 131 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHH-HHHHHTTTCCE
T ss_pred eEEEEECcCCCCHHHHHHHH-HHHHHHCCCeE
Confidence 47889999999999764433 34565555543
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=69.57 E-value=1.7 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=13.3
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.++.|-+|+|+|||-
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3568899999999973
No 364
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.56 E-value=1.4 Score=36.85 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 39 ~~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 468899999999999994
No 365
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=69.50 E-value=1.7 Score=32.40 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.3
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.++.|||||-
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 578999999999984
No 366
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=69.41 E-value=1.4 Score=36.73 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 31 ~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKST 48 (266)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 468889999999999984
No 367
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.40 E-value=1.5 Score=34.42 Aligned_cols=14 Identities=21% Similarity=0.062 Sum_probs=12.0
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.++|.+|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 37899999999984
No 368
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=69.33 E-value=1.4 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+..++|+++.|+|||-
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 4578999999999994
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=69.10 E-value=2.7 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.2
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
|.++.|-+|+|+|||-.
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45788999999999964
No 370
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=69.05 E-value=1.4 Score=36.77 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.2
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 43 i~~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKST 61 (267)
T ss_dssp ECTTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999984
No 371
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=69.03 E-value=5.1 Score=36.43 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=20.0
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhhhhhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYDHKIV 80 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~~~~~ 80 (194)
.+++|-+|+|+|||-....- ..|+...+.+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kL-A~~l~~~G~k 127 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKL-AYFYKKRGYK 127 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHH-HHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHH-HHHHHHcCCe
Confidence 47888899999999654433 3455554444
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=68.94 E-value=1.5 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 30 ~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKST 47 (262)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468889999999999984
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.72 E-value=1.4 Score=36.54 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 29 ~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKST 46 (253)
T ss_dssp ETTCEEEEECCSSSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 468889999999999994
No 374
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=68.51 E-value=2.5 Score=37.62 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHHHHHHH----HHHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 33 DIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 33 ~iQ~e~M~~I----~~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
..|.++...+ .+.+-+|. -++.-+.||||||++.+
T Consensus 83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 4577765544 23333453 35668999999999874
No 375
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.48 E-value=2.2 Score=41.25 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=14.5
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
+..++|.+|+|||||..
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 56789999999999953
No 376
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=68.46 E-value=3.4 Score=39.18 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
..++++-+.||+|||..+-.-++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999998766555555543
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=68.25 E-value=1.5 Score=37.14 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.2
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 31 i~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKST 49 (275)
T ss_dssp EETTSEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3468899999999999984
No 378
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=68.21 E-value=1.5 Score=36.72 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.2
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 42 i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3568899999999999993
No 379
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=68.21 E-value=1.5 Score=36.48 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 24 ~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKST 41 (249)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 468889999999999984
No 380
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.19 E-value=2.4 Score=36.01 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=19.1
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
..|.+++|-+|+|+|||.-.+.-+..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 34688999999999999654444433
No 381
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=68.00 E-value=2.9 Score=35.69 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.3
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
++.+|-+|+|+|||-
T Consensus 24 ~~~~i~G~NGsGKS~ 38 (339)
T 3qkt_A 24 GINLIIGQNGSGKSS 38 (339)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 577899999999996
No 382
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.25 E-value=1.3 Score=39.83 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHhcCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 45 TLDNSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
-|..|..+++-|++|+|||.-.+--++..+..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 35567899999999999997555555555443
No 383
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=67.08 E-value=1.7 Score=36.55 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 48 ~~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKST 65 (263)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEEcCCCCcHHH
Confidence 468889999999999984
No 384
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.05 E-value=3 Score=37.03 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=23.2
Q ss_pred HHHHHHHHHHH----HHHhcCC--ceeeeCCCCCCchHHHH
Q psy14272 33 DIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (194)
Q Consensus 33 ~iQ~e~M~~I~----~~L~~gk--~~I~ESPTGTGKTLS~L 67 (194)
..|.++...+. +.+-+|. -++.-+.||||||.+.+
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 56877765543 3333453 35568999999999873
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=66.95 E-value=2.3 Score=32.06 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.0
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|-+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 3 PKAVLVGLPGSGKST 17 (184)
T ss_dssp CSEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 468899999999984
No 386
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=66.67 E-value=4.7 Score=35.08 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCC------ceeeeCCCCCCchH
Q psy14272 37 NFMKNLYYTLDNSK------FGIFESPTGTGKSL 64 (194)
Q Consensus 37 e~M~~I~~~L~~gk------~~I~ESPTGTGKTL 64 (194)
+-+..+...+..+. ++-|-+|+|+|||-
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKST 107 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKST 107 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHH
Confidence 33444444444443 67788999999984
No 387
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=66.64 E-value=1.7 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 35 ~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp ETTCEEEEECCTTSCHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 468899999999999984
No 388
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=66.54 E-value=4.8 Score=35.18 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=19.4
Q ss_pred HHHHHHHHH----hcCCceeeeCCCCCCchHH
Q psy14272 38 FMKNLYYTL----DNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 38 ~M~~I~~~L----~~gk~~I~ESPTGTGKTLS 65 (194)
.|..+.+.+ .....+++.+++||||++.
T Consensus 145 ~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~l 176 (387)
T 1ny5_A 145 KMKEILEKIKKISCAECPVLITGESGVGKEVV 176 (387)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSTTSSHHHH
T ss_pred HhhHHHHHHHHhcCCCCCeEEecCCCcCHHHH
Confidence 344544444 3456789999999999963
No 389
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=66.22 E-value=3.1 Score=36.23 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=20.7
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
|..|.++++-+|+|+|||.-.+.-+...+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568899999999999965444444433
No 390
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=66.07 E-value=1.7 Score=36.68 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.1
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 44 i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3468889999999999984
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=66.03 E-value=3.3 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.3
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
.+++|-+++|+|||-.
T Consensus 80 ~~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 80 HRVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678899999999953
No 392
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=65.68 E-value=2.4 Score=31.93 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.2
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
+++|-+|.|+|||-
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 68889999999984
No 393
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.33 E-value=2.9 Score=35.96 Aligned_cols=26 Identities=12% Similarity=-0.110 Sum_probs=19.2
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
..|.+++|-+|+|+|||.-.+.-+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999755544443
No 394
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=65.06 E-value=3.2 Score=36.47 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 41 ~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
.+..-|..|..+|+-|++|+|||.-.+.-+...+.
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44445567789999999999999755555444443
No 395
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=64.78 E-value=3.4 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=14.2
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..+.++.|-+|+|+|||-
T Consensus 54 ~~~~~i~i~G~~g~GKST 71 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKST 71 (341)
T ss_dssp SCSEEEEEEECTTSCHHH
T ss_pred CCCEEEEEEcCCCCCHHH
Confidence 345677788999999994
No 396
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=64.67 E-value=4.3 Score=37.13 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHH----HHHhcCC--ceeeeCCCCCCchHHH
Q psy14272 32 YDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSL 66 (194)
Q Consensus 32 y~iQ~e~M~~I~----~~L~~gk--~~I~ESPTGTGKTLS~ 66 (194)
+..|.++...+. +.+-+|. -++.-+.||||||.+.
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 567877765543 2333453 3556899999999997
No 397
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=64.42 E-value=2.4 Score=33.13 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.8
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.+.|-+|+|+|||-
T Consensus 2 ~i~l~G~nGsGKTT 15 (178)
T 1ye8_A 2 KIIITGEPGVGKTT 15 (178)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999985
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=64.26 E-value=2.2 Score=32.75 Aligned_cols=14 Identities=29% Similarity=0.131 Sum_probs=12.2
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
++++.+|.|+|||-
T Consensus 3 ~i~i~G~~GsGKST 16 (204)
T 2if2_A 3 RIGLTGNIGCGKST 16 (204)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 57789999999994
No 399
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=64.24 E-value=2.7 Score=35.20 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=18.9
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
..|.+++|-+|+|+|||.-.+.-+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999654444433
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=64.16 E-value=2.3 Score=33.41 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=15.8
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+.+.|-+|+|+|||- ++..++.++..
T Consensus 3 ~~v~IvG~SGsGKST-L~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTT-LITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHH-HHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHH-HHHHHHHHhhh
Confidence 346677799999984 23333444443
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=63.92 E-value=1.9 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.4
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 62 ~~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp CTTCEEEEEESTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357888999999999994
No 402
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.46 E-value=4.2 Score=35.69 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=20.7
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
|..|.+++|-+|+|+|||.-.+.-+...+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568899999999999975544443333
No 403
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.38 E-value=5.2 Score=34.18 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.2
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
+.++.|-+|+|+|||-.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 56788889999999854
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=63.20 E-value=4.9 Score=33.85 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.5
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..+.++.|-+|+|+|||-
T Consensus 78 ~~g~iigI~G~~GsGKST 95 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKST 95 (308)
T ss_dssp CCCEEEEEEECTTSSHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 445678889999999984
No 405
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=63.19 E-value=4.6 Score=35.86 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=22.5
Q ss_pred CHHHHHHHHHH----HHHHhcCCc--eeeeCCCCCCchHHHH
Q psy14272 32 YDIQSNFMKNL----YYTLDNSKF--GIFESPTGTGKSLSLI 67 (194)
Q Consensus 32 y~iQ~e~M~~I----~~~L~~gk~--~I~ESPTGTGKTLS~L 67 (194)
...|.++...+ .+.+-+|.+ ++.-+.||||||.+.+
T Consensus 81 ~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 81 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 34676665544 233334533 4557999999999863
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=63.14 E-value=2.3 Score=34.88 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.1
Q ss_pred hcCCceeeeCCCCCCch
Q psy14272 47 DNSKFGIFESPTGTGKS 63 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKT 63 (194)
...+++||-+|.|+||+
T Consensus 27 ~k~kiI~llGpPGsGKg 43 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKG 43 (217)
T ss_dssp TSCEEEEEECCTTCCHH
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34578889999999995
No 407
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=63.06 E-value=2.8 Score=34.20 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.0
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..+.++.|-+|+|+|||-
T Consensus 25 ~~g~~I~I~G~~GsGKST 42 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGT 42 (252)
T ss_dssp TTSCEEEEECCTTSSHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 356788899999999984
No 408
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.91 E-value=3.6 Score=36.36 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=19.5
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
..|.+++|-+|+|+|||.-.++-+...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999996555444333
No 409
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=61.63 E-value=4.8 Score=36.14 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHh----cCCceeeeCCCCCCchH
Q psy14272 29 FDAYDIQSNFMKNLYYTLD----NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 29 y~py~iQ~e~M~~I~~~L~----~gk~~I~ESPTGTGKTL 64 (194)
|-.|+...+ .|...|. ...+++|.||.|+|||-
T Consensus 126 ~vGR~~~l~---~L~~~L~~~~~~~~~v~I~G~~GiGKTt 162 (591)
T 1z6t_A 126 FVTRKKLVN---AIQQKLSKLKGEPGWVTIHGMAGCGKSV 162 (591)
T ss_dssp CCCCHHHHH---HHHHHHTTSTTSCEEEEEECCTTSSHHH
T ss_pred ecccHHHHH---HHHHHHhcccCCCceEEEEcCCCCCHHH
Confidence 445655555 5555664 34678999999999994
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=61.59 E-value=4.8 Score=29.51 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=13.3
Q ss_pred ceeeeCCCCCCchHHHHHH
Q psy14272 51 FGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~ 69 (194)
.++|-+++|+||| |++..
T Consensus 6 ki~v~G~~~~GKS-sli~~ 23 (189)
T 4dsu_A 6 KLVVVGADGVGKS-ALTIQ 23 (189)
T ss_dssp EEEEECCTTSSHH-HHHHH
T ss_pred EEEEECCCCCCHH-HHHHH
Confidence 3678899999999 44433
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=61.48 E-value=2.8 Score=34.30 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=13.0
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKST 17 (301)
T 1ltq_A 3 KIILTIGCPGSGKST 17 (301)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 368899999999985
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=61.31 E-value=4.4 Score=35.78 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.3
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
|.++.+-+|+|+|||-.
T Consensus 157 g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 45788999999999964
No 413
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=61.27 E-value=5.9 Score=33.28 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=18.0
Q ss_pred ceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 51 FGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
.+++-++.|+|||...+.-+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478899999999987666554443
No 414
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=61.17 E-value=4.8 Score=34.10 Aligned_cols=15 Identities=47% Similarity=0.860 Sum_probs=12.5
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.++.|-+|+|+|||-
T Consensus 32 ~ii~I~G~sGsGKST 46 (290)
T 1odf_A 32 LFIFFSGPQGSGKSF 46 (290)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 467789999999984
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=61.00 E-value=3 Score=32.17 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.9
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
++.+-+|.|+|||-
T Consensus 4 ~i~l~G~~GsGKST 17 (206)
T 1jjv_A 4 IVGLTGGIGSGKTT 17 (206)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 56788999999984
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=60.79 E-value=5.1 Score=31.75 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=19.4
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHHHhhhhhh
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKWYYDHKIV 80 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~wl~~~~~~ 80 (194)
..++++-+..|+|||-. +.....++. .+.+
T Consensus 14 ~~i~~~~GkgGvGKTTl-~~~La~~l~-~g~~ 43 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTL-TGEFGRYLE-DNYK 43 (262)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHT-TTSC
T ss_pred eEEEEEeCCCCCCHHHH-HHHHHHHHH-CCCe
Confidence 35788899999999953 333344544 4433
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=60.04 E-value=2.6 Score=35.34 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.5
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+. |.++.+-+|+|+|||-
T Consensus 28 i~-Ge~~~i~G~NGsGKST 45 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTT 45 (263)
T ss_dssp EC-SSEEEEECCTTSSHHH
T ss_pred EC-CEEEEEECCCCCCHHH
Confidence 45 7888999999999994
No 418
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=59.75 E-value=6 Score=34.30 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
+.++.|-+|+|+|||-.
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56889999999999954
No 419
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=59.45 E-value=5 Score=33.89 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=19.4
Q ss_pred HHHHHHhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 41 ~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
.+...+ .|.+..|-+|+|+|||- |+-+|.
T Consensus 158 ~L~~~l-~G~i~~l~G~sG~GKST--Lln~l~ 186 (302)
T 2yv5_A 158 ELVDYL-EGFICILAGPSGVGKSS--ILSRLT 186 (302)
T ss_dssp HHHHHT-TTCEEEEECSTTSSHHH--HHHHHH
T ss_pred HHHhhc-cCcEEEEECCCCCCHHH--HHHHHH
Confidence 444433 36788899999999983 344444
No 420
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=59.28 E-value=1.9 Score=37.23 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|..+.|-+|+|+|||-
T Consensus 78 ~~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKST 95 (306)
T ss_dssp CTTCEEEEESSSCHHHHH
T ss_pred cCCCEEEEECCCCchHHH
Confidence 468899999999999984
No 421
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.12 E-value=3 Score=31.64 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.8
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.++.+-+|+|||||-
T Consensus 9 ~~I~i~G~~GsGKST 23 (203)
T 1uf9_A 9 IIIGITGNIGSGKST 23 (203)
T ss_dssp EEEEEEECTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 467889999999984
No 422
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=58.61 E-value=5.2 Score=35.29 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=19.2
Q ss_pred HhcCCceeeeCCCCCCchHHHHHHHHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLSLICGILK 72 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS~L~~al~ 72 (194)
|..|.+++|-+|+|+|||.-.+.-+..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 335678999999999999644443333
No 423
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.42 E-value=6.6 Score=33.15 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=14.9
Q ss_pred CCceeeeCCCCCCchHHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~ 69 (194)
++++.|-+|+|+|||-...+-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456666799999998654443
No 424
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=58.27 E-value=6.8 Score=32.54 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=22.8
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.|.+.++.+|-|+|||..+|--+..+...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 46788899999999998877776666543
No 425
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=57.82 E-value=6.2 Score=35.54 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCC--------------------ceeeeCCCCCCchH
Q psy14272 36 SNFMKNLYYTLDNSK--------------------FGIFESPTGTGKSL 64 (194)
Q Consensus 36 ~e~M~~I~~~L~~gk--------------------~~I~ESPTGTGKTL 64 (194)
...++.|--.+..|. ++.|-+|+|+|||-
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKST 84 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 84 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHH
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHH
Confidence 345667777777777 88899999999994
No 426
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.71 E-value=4.6 Score=36.63 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHH-HHhcCCceeeeCCCCCCchHHHHH
Q psy14272 39 MKNLYY-TLDNSKFGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 39 M~~I~~-~L~~gk~~I~ESPTGTGKTLS~L~ 68 (194)
++.|.- .|..|.+..+.+|+|+|||.-+.+
T Consensus 28 Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 28 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHH
Confidence 445544 556789999999999999865444
No 427
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=57.33 E-value=1.6 Score=37.53 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=17.6
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
| +.+|-+|+|+|||- |+-+|.++.
T Consensus 61 G-~~~lvG~NGaGKSt--Ll~aI~~l~ 84 (415)
T 4aby_A 61 G-FCAFTGETGAGKSI--IVDALGLLL 84 (415)
T ss_dssp S-EEEEEESHHHHHHH--HTHHHHHHT
T ss_pred C-cEEEECCCCCCHHH--HHHHHHHHh
Confidence 5 88999999999995 344455444
No 428
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=57.30 E-value=2.6 Score=32.04 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..+..+++-+|+|+|||-
T Consensus 24 ~~~~~v~lvG~~g~GKST 41 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSS 41 (210)
T ss_dssp SCSEEEEEEECTTSSHHH
T ss_pred CCCcEEEEECCCCCCHHH
Confidence 356678889999999993
No 429
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=57.30 E-value=4 Score=39.53 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=17.3
Q ss_pred CCceeeeCCCCCCchHHHHHHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLICGILKW 73 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~~al~w 73 (194)
+..++|.+|+|||||. |+-++..
T Consensus 511 ~~~vLL~GppGtGKT~--Lakala~ 533 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTL--LAKAIAN 533 (806)
T ss_dssp CCCCCCBCCTTSSHHH--HHHHHHH
T ss_pred CceeEEECCCCCCHHH--HHHHHHH
Confidence 4678999999999997 3444443
No 430
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=57.22 E-value=3.1 Score=36.77 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.3
Q ss_pred HhcCCceeeeCCCCCCchH
Q psy14272 46 LDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTL 64 (194)
+..|.++.+-+|+|+|||-
T Consensus 38 i~~Ge~~~llGpnGsGKST 56 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTT 56 (355)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCcHHH
Confidence 3568899999999999995
No 431
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=57.18 E-value=7 Score=33.20 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=14.7
Q ss_pred CceeeeCCCCCCchHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~ 69 (194)
.++++-+|+|+|||-....-
T Consensus 99 ~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35667799999999654443
No 432
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=57.15 E-value=2.9 Score=35.83 Aligned_cols=18 Identities=17% Similarity=-0.029 Sum_probs=14.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.|-+|+|+|||-
T Consensus 88 ~~g~ivgI~G~sGsGKST 105 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKST 105 (312)
T ss_dssp CCCEEEEEECCTTSCHHH
T ss_pred CCCEEEEEECCCCchHHH
Confidence 346678889999999984
No 433
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=56.60 E-value=5.7 Score=37.10 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=15.6
Q ss_pred CCceeeeCCCCCCchHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~ 68 (194)
|.++.|-+|+|+|||-.+-+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHH
Confidence 56788999999999964433
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=56.58 E-value=3.9 Score=32.98 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=11.4
Q ss_pred ceeeeCCCCCCch
Q psy14272 51 FGIFESPTGTGKS 63 (194)
Q Consensus 51 ~~I~ESPTGTGKT 63 (194)
++||-+|.|+||+
T Consensus 2 ~Iil~GpPGsGKg 14 (206)
T 3sr0_A 2 ILVFLGPPGAGKG 14 (206)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5788899999996
No 435
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=56.45 E-value=3.9 Score=40.21 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.6
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+-++|.+|.|||||+-
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999963
No 436
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=56.00 E-value=2.2 Score=35.32 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=16.9
Q ss_pred ceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 51 FGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+..|-+|+|+|||- |+-+|+|+..
T Consensus 29 ~~~i~GpnGsGKST--ll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKST--TMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHH--HHHHHHHHHS
T ss_pred EEEEECCCCCCHHH--HHHHHhcccc
Confidence 34567899999984 4556666653
No 437
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=55.96 E-value=3.4 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 27 ~~Ge~~~llGpnGsGKST 44 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTT 44 (359)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEEcCCCchHHH
Confidence 468889999999999995
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=55.92 E-value=5.7 Score=29.67 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=14.0
Q ss_pred CCceeeeCCCCCCchHHHHH
Q psy14272 49 SKFGIFESPTGTGKSLSLIC 68 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS~L~ 68 (194)
+..++|-+++|+||| |++-
T Consensus 4 ~~ki~ivG~~g~GKS-tLl~ 22 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKS-SLLN 22 (172)
T ss_dssp CEEEEEEESTTSSHH-HHHH
T ss_pred CCEEEEECCCCCCHH-HHHH
Confidence 345778899999999 4443
No 439
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=55.91 E-value=3.4 Score=36.62 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 27 ~~Ge~~~llGpnGsGKST 44 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTT 44 (372)
T ss_dssp ETTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCcHHHH
Confidence 468899999999999995
No 440
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=55.82 E-value=3.4 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 27 ~~Ge~~~llGpnGsGKST 44 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKST 44 (362)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCchHHH
Confidence 468889999999999995
No 441
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=55.50 E-value=3.2 Score=36.84 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 28 ~~Ge~~~llGpsGsGKST 45 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTT 45 (359)
T ss_dssp CTTCEEEEEESTTSSHHH
T ss_pred cCCCEEEEECCCCchHHH
Confidence 468889999999999984
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=55.06 E-value=3.8 Score=37.77 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 39 MKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 39 M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
.+.|-=.+..|..+.+-+|+|+|||-
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKST 384 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKST 384 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHH
Confidence 34444445678999999999999983
No 443
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.85 E-value=5.2 Score=32.87 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=13.1
Q ss_pred CCceeeeCCCCCCch
Q psy14272 49 SKFGIFESPTGTGKS 63 (194)
Q Consensus 49 gk~~I~ESPTGTGKT 63 (194)
|.-++|-+|.|+|||
T Consensus 16 G~gvli~G~SGaGKS 30 (181)
T 3tqf_A 16 KMGVLITGEANIGKS 30 (181)
T ss_dssp TEEEEEEESSSSSHH
T ss_pred CEEEEEEcCCCCCHH
Confidence 456889999999999
No 444
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.82 E-value=4.6 Score=34.97 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=17.7
Q ss_pred hcCCceeeeCCCCCCchHHHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~ 69 (194)
..|.++.|-+|+|+|||--+++-
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45688999999999998644443
No 445
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=54.77 E-value=3.7 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 35 ~~Ge~~~llGpnGsGKST 52 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTT 52 (372)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCChHHH
Confidence 468889999999999995
No 446
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=54.77 E-value=3.7 Score=37.89 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|..+.+-+|+|+|||-
T Consensus 365 ~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKST 382 (578)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCChHHH
Confidence 458889999999999994
No 447
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=54.40 E-value=6.8 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.5
Q ss_pred cCCceeeeCCCCCCchH
Q psy14272 48 NSKFGIFESPTGTGKSL 64 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTL 64 (194)
.+.+++|.+|+|+|||.
T Consensus 122 ~gsviLI~GpPGsGKTt 138 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTP 138 (331)
T ss_dssp ESEEEEEECSCSSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 45678999999999995
No 448
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=54.33 E-value=5.7 Score=35.48 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=17.0
Q ss_pred hcCCceeeeCCCCCCchHHHH
Q psy14272 47 DNSKFGIFESPTGTGKSLSLI 67 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L 67 (194)
..|.+++|-+|+|+|||--++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHH
Confidence 346889999999999996544
No 449
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.27 E-value=11 Score=29.75 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.4
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
|.++.|-+|+|+|||-
T Consensus 1 G~~i~i~G~nG~GKTT 16 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTT 16 (189)
T ss_dssp CCCEEEESCCSSCHHH
T ss_pred CCEEEEECCCCChHHH
Confidence 4567888999999985
No 450
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=53.92 E-value=9 Score=33.48 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhc----------------CCceeeeCCCCCCch
Q psy14272 34 IQSNFMKNLYYTLDN----------------SKFGIFESPTGTGKS 63 (194)
Q Consensus 34 iQ~e~M~~I~~~L~~----------------gk~~I~ESPTGTGKT 63 (194)
.-.+++..|..+|.. |.-++|-++.|+|||
T Consensus 113 ~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKS 158 (314)
T 1ko7_A 113 ATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKS 158 (314)
T ss_dssp CHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHH
T ss_pred chhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHH
Confidence 344667777777876 777999999999997
No 451
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=53.27 E-value=4 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=14.2
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
.. .++.+-+|+|+|||-
T Consensus 23 ~~-e~~~liG~nGsGKST 39 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSV 39 (240)
T ss_dssp CS-SEEEEECCTTSSHHH
T ss_pred CC-EEEEEECCCCCCHHH
Confidence 45 678889999999984
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=53.09 E-value=4.1 Score=37.80 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|..+.+-+|+|+|||-
T Consensus 379 ~~G~~~~ivG~sGsGKST 396 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTT 396 (598)
T ss_dssp CTTCEEEEECCTTSSTTH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 458899999999999984
No 453
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=52.99 E-value=3.7 Score=37.86 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|..+.+-+|+|+|||-
T Consensus 367 ~~G~~~~ivG~sGsGKST 384 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKST 384 (582)
T ss_dssp CTTCEEEEEECTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 458889999999999984
No 454
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=52.91 E-value=15 Score=31.80 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 37 NFMKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 37 e~M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
++...+...-.....+++.+++||||++
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~ 167 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEI 167 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHH
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHH
Confidence 3333343333455779999999999985
No 455
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=52.82 E-value=22 Score=29.81 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHh------cCCceeeeCC-CCCCchHHHHHHHHHHHhh
Q psy14272 36 SNFMKNLYYTLD------NSKFGIFESP-TGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 36 ~e~M~~I~~~L~------~gk~~I~ESP-TGTGKTLS~L~~al~wl~~ 76 (194)
.+.++.|...|. ..++++|-|+ .|.|||...+.-+..+...
T Consensus 85 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~ 132 (299)
T 3cio_A 85 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQS 132 (299)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhC
Confidence 444555544442 2356777776 6999997666555555543
No 456
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=52.64 E-value=17 Score=30.05 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHh------cCCceeeeCC-CCCCchHHHHHHHHHHHh
Q psy14272 31 AYDIQSNFMKNLYYTLD------NSKFGIFESP-TGTGKSLSLICGILKWYY 75 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~------~gk~~I~ESP-TGTGKTLS~L~~al~wl~ 75 (194)
|...-.+.++.|...|. ..++++|-|+ .|.|||...+.-+..+..
T Consensus 58 ~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~ 109 (271)
T 3bfv_A 58 PKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQ 109 (271)
T ss_dssp TTSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 33333444555555443 1256767766 689999766555555554
No 457
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=52.47 E-value=8.2 Score=35.71 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=17.0
Q ss_pred ceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 51 FGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
+++|-+++|+|||-. +.....|+...+
T Consensus 103 vI~ivG~~GvGKTTl-~~kLA~~l~~~G 129 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT-CSKLAYYYQRKG 129 (504)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCC
Confidence 566779999999954 333334554433
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=52.36 E-value=5.1 Score=30.42 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=12.3
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
++.+-+|.|||||-
T Consensus 4 ~i~i~G~~GsGKst 17 (208)
T 3ake_A 4 IVTIDGPSASGKSS 17 (208)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 67889999999984
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=52.25 E-value=2.7 Score=36.75 Aligned_cols=28 Identities=21% Similarity=0.082 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCceeeeCCCCCCchHH
Q psy14272 37 NFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 37 e~M~~I~~~L~~gk~~I~ESPTGTGKTLS 65 (194)
..++.+ -.+..|..+.|-+|.|+|||--
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHH
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHH
Confidence 345555 5557788899999999999953
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=52.23 E-value=4.2 Score=37.56 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|..+.+-+|+|+|||-
T Consensus 368 ~~G~~~~ivG~sGsGKST 385 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKST 385 (595)
T ss_dssp CTTCEEEEECCTTSSSTH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 458889999999999984
No 461
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=51.77 E-value=7.2 Score=37.67 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
+...|.+.+..+..++. ++.|+.|+-|.|||.+ +-.++..+.
T Consensus 176 ~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa~-lG~~~a~~~ 217 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSAL-AGQLISRIA 217 (671)
T ss_dssp CCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHHH-HHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHHH-HHHHHHHHH
Confidence 67889997777765542 5789999999999944 444455543
No 462
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=51.55 E-value=6.2 Score=34.73 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=13.0
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
+.+|-+|+|+|||-
T Consensus 28 ~~~i~G~nG~GKtt 41 (359)
T 2o5v_A 28 VTGIYGENGAGKTN 41 (359)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCCCChhH
Confidence 88999999999995
No 463
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=51.38 E-value=8.7 Score=32.23 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.2
Q ss_pred cCCceeeeCCCCCCch
Q psy14272 48 NSKFGIFESPTGTGKS 63 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKT 63 (194)
.+.++.|-+|+|+|||
T Consensus 168 ~geiv~l~G~sG~GKS 183 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKS 183 (301)
T ss_dssp SSSEEEEECSTTSSHH
T ss_pred cCCeEEEECCCCCcHH
Confidence 4678889999999998
No 464
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=51.21 E-value=3 Score=36.67 Aligned_cols=18 Identities=33% Similarity=0.730 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 24 ~~Ge~~~llGpnGsGKST 41 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTL 41 (348)
T ss_dssp CTTCEEEEECCCTHHHHH
T ss_pred cCCCEEEEECCCCccHHH
Confidence 468889999999999995
No 465
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=50.91 E-value=3.2 Score=37.36 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+..+.||++-|+|||-
T Consensus 49 ~~fIt~EG~dGsGKTT 64 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTT 64 (376)
T ss_dssp EEEEEECSSTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4568999999999994
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.51 E-value=11 Score=33.81 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=13.7
Q ss_pred CceeeeCCCCCCchHHH
Q psy14272 50 KFGIFESPTGTGKSLSL 66 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~ 66 (194)
.+++|-+|+|+|||-..
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999643
No 467
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=50.03 E-value=4.8 Score=37.29 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.6
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|..+.+-+|+|+|||-
T Consensus 367 ~~Ge~~~ivG~sGsGKST 384 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKST 384 (587)
T ss_dssp CTTCEEEEECSSSSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 458889999999999984
No 468
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=49.92 E-value=6.3 Score=35.81 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=16.8
Q ss_pred HHhcCCceeeeCCCCCCchH
Q psy14272 45 TLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 45 ~L~~gk~~I~ESPTGTGKTL 64 (194)
.+..|.++.+-+|+|+|||-
T Consensus 134 ~i~~Ge~v~IvGpnGsGKST 153 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTS 153 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHH
T ss_pred EeCCCCEEEEECCCCCCHHH
Confidence 34578899999999999984
No 469
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=49.92 E-value=9.8 Score=34.41 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=17.8
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhhhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYDHK 78 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~~~ 78 (194)
.+++|-+|+|+|||-...+-+ .|+...+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA-~~l~~~g 126 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLA-LYYKGKG 126 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHHcC
Confidence 456677999999996544443 3444333
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=49.85 E-value=6.1 Score=28.12 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=11.1
Q ss_pred ceeeeCCCCCCch
Q psy14272 51 FGIFESPTGTGKS 63 (194)
Q Consensus 51 ~~I~ESPTGTGKT 63 (194)
.+++-+++|+|||
T Consensus 3 ki~v~G~~~~GKS 15 (161)
T 2dyk_A 3 KVVIVGRPNVGKS 15 (161)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3677889999999
No 471
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=49.75 E-value=3.4 Score=37.44 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=18.6
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHH
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWY 74 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl 74 (194)
++.+|-++||+|||. |+-+|.|+
T Consensus 61 g~n~i~G~NGaGKS~--lleAl~~l 83 (517)
T 4ad8_A 61 GFCAFTGETGAGKSI--IVDALGLL 83 (517)
T ss_dssp SEEEEEESHHHHHHH--HTHHHHHH
T ss_pred CeEEEEcCCCCCHHH--HHHHHHHH
Confidence 488999999999995 55567776
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=49.08 E-value=7.1 Score=31.04 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.8
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
+.++.|-+|.|+|||-
T Consensus 16 ~~~i~i~G~~gsGKst 31 (236)
T 1q3t_A 16 TIQIAIDGPASSGKST 31 (236)
T ss_dssp CCEEEEECSSCSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 5678899999999985
No 473
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.76 E-value=8.1 Score=37.97 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.5
Q ss_pred CceeeeCCCCCCchHH
Q psy14272 50 KFGIFESPTGTGKSLS 65 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS 65 (194)
+-++|-+|.|||||+.
T Consensus 512 ~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLL 527 (806)
T ss_dssp SCCEEESSTTSSHHHH
T ss_pred ceEEEecCCCCCchHH
Confidence 4588999999999963
No 474
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=48.53 E-value=11 Score=37.73 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=21.5
Q ss_pred CceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 50 KFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 50 k~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
+..+++|+-|||||.++..=++..+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~ 43 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLG 43 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 345999999999999877777666654
No 475
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=48.23 E-value=11 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.3
Q ss_pred cCCceeeeCCCCCCchHHHHHHHHHHHhh
Q psy14272 48 NSKFGIFESPTGTGKSLSLICGILKWYYD 76 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKTLS~L~~al~wl~~ 76 (194)
.|++.++-+|.|+|||--+|=.+-.+...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 47899999999999997766665555443
No 476
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=48.06 E-value=10 Score=30.65 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=12.0
Q ss_pred CceeeeCCCCCCch
Q psy14272 50 KFGIFESPTGTGKS 63 (194)
Q Consensus 50 k~~I~ESPTGTGKT 63 (194)
-.++|-++||+|||
T Consensus 22 l~I~lvG~~g~GKS 35 (247)
T 3lxw_A 22 RRLILVGRTGAGKS 35 (247)
T ss_dssp EEEEEESSTTSSHH
T ss_pred eEEEEECCCCCcHH
Confidence 35788899999999
No 477
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=47.94 E-value=6.7 Score=29.18 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.8
Q ss_pred ceeeeCCCCCCch
Q psy14272 51 FGIFESPTGTGKS 63 (194)
Q Consensus 51 ~~I~ESPTGTGKT 63 (194)
.+++-+++|+|||
T Consensus 50 ~i~vvG~~g~GKS 62 (193)
T 2ged_A 50 SIIIAGPQNSGKT 62 (193)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5788999999999
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=47.94 E-value=5.6 Score=33.10 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=13.0
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
.+++|.+|.|||||-
T Consensus 76 ~iI~I~G~~GSGKST 90 (281)
T 2f6r_A 76 YVLGLTGISGSGKSS 90 (281)
T ss_dssp EEEEEEECTTSCHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 468899999999984
No 479
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=47.93 E-value=9.5 Score=34.33 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=16.8
Q ss_pred ceeeeCCCCCCchHHHHHHHHHHHhhh
Q psy14272 51 FGIFESPTGTGKSLSLICGILKWYYDH 77 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~al~wl~~~ 77 (194)
+++|-+++|+|||-....-+ .|+...
T Consensus 102 vI~ivG~~GvGKTT~a~~LA-~~l~~~ 127 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG-KFLREK 127 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHh
Confidence 56667999999996543333 344443
No 480
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=47.91 E-value=6.4 Score=31.69 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=12.2
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
++.|-+|.|||||-
T Consensus 24 iI~I~G~~GSGKST 37 (252)
T 1uj2_A 24 LIGVSGGTASGKSS 37 (252)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57789999999984
No 481
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.79 E-value=7 Score=35.58 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCc--eeeeCCCCCCchH
Q psy14272 39 MKNLYYTLDNSKF--GIFESPTGTGKSL 64 (194)
Q Consensus 39 M~~I~~~L~~gk~--~I~ESPTGTGKTL 64 (194)
.+.|--.+..|.+ +.|-+|+|+|||-
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKST 57 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKST 57 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHH
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHH
Confidence 3466666778888 8899999999984
No 482
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=47.75 E-value=7.6 Score=29.99 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.9
Q ss_pred CCceeeeCCCCCCchHH
Q psy14272 49 SKFGIFESPTGTGKSLS 65 (194)
Q Consensus 49 gk~~I~ESPTGTGKTLS 65 (194)
+.++++.+|.|+|||..
T Consensus 3 ~~~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 3 AINIALDGPAAAGKSTI 19 (219)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34788999999999853
No 483
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=47.72 E-value=6.2 Score=27.86 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.0
Q ss_pred eeeeCCCCCCchH
Q psy14272 52 GIFESPTGTGKSL 64 (194)
Q Consensus 52 ~I~ESPTGTGKTL 64 (194)
+++-+++|+|||-
T Consensus 6 i~v~G~~~~GKss 18 (166)
T 2ce2_X 6 LVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6778899999993
No 484
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=47.69 E-value=12 Score=31.43 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=21.9
Q ss_pred hcCCceeeeCCCCCCchHHHHHHHHHHHh
Q psy14272 47 DNSKFGIFESPTGTGKSLSLICGILKWYY 75 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTLS~L~~al~wl~ 75 (194)
..|.+.++-+|-|+|||-.+|--+..+..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~ 54 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY 54 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999766655544543
No 485
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=47.37 E-value=7.1 Score=27.88 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=11.1
Q ss_pred ceeeeCCCCCCch
Q psy14272 51 FGIFESPTGTGKS 63 (194)
Q Consensus 51 ~~I~ESPTGTGKT 63 (194)
.+++-+++|+|||
T Consensus 7 ~i~v~G~~~~GKs 19 (168)
T 1z2a_A 7 KMVVVGNGAVGKS 19 (168)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3677889999999
No 486
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=47.22 E-value=3 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.8
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 29 ~~Ge~~~llGpnGsGKST 46 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTT 46 (353)
T ss_dssp CTTCEEEEECSCHHHHHH
T ss_pred CCCCEEEEECCCCCcHHH
Confidence 468889999999999995
No 487
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=47.16 E-value=5.7 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.7
Q ss_pred hcCCceeeeCCCCCCchH
Q psy14272 47 DNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 47 ~~gk~~I~ESPTGTGKTL 64 (194)
..|.++.+-+|+|+|||-
T Consensus 52 ~~Gei~~IiGpnGaGKST 69 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKST 69 (366)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEEcCCCchHHH
Confidence 468889999999999994
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=46.95 E-value=6.7 Score=29.67 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=12.0
Q ss_pred CceeeeCCCCCCch
Q psy14272 50 KFGIFESPTGTGKS 63 (194)
Q Consensus 50 k~~I~ESPTGTGKT 63 (194)
-.++|-+++|+|||
T Consensus 29 ~ki~v~G~~~~GKS 42 (199)
T 2p5s_A 29 YKIVLAGDAAVGKS 42 (199)
T ss_dssp EEEEEESSTTSSHH
T ss_pred eEEEEECcCCCCHH
Confidence 45788899999999
No 489
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=46.83 E-value=12 Score=33.11 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=14.7
Q ss_pred cCCceeeeCCCCCCch
Q psy14272 48 NSKFGIFESPTGTGKS 63 (194)
Q Consensus 48 ~gk~~I~ESPTGTGKT 63 (194)
.|.+++|-+|+|+|||
T Consensus 214 ~G~~~~lvG~sG~GKS 229 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKS 229 (358)
T ss_dssp TTSEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCccHH
Confidence 5788999999999999
No 490
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=46.83 E-value=14 Score=29.95 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHhcC---CceeeeCCCCCCch
Q psy14272 31 AYDIQSNFMKNLYYTLDNS---KFGIFESPTGTGKS 63 (194)
Q Consensus 31 py~iQ~e~M~~I~~~L~~g---k~~I~ESPTGTGKT 63 (194)
|...|..+...+......+ -.+++-+++|+|||
T Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKS 53 (270)
T 1h65_A 18 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKS 53 (270)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHH
Confidence 5455566555554444433 25788899999999
No 491
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=46.55 E-value=7.5 Score=32.23 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=13.7
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
..++.|-+|+|+|||-
T Consensus 9 ~~~i~i~G~~GsGKsT 24 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSS 24 (233)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578899999999984
No 492
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=46.01 E-value=7.6 Score=28.13 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=11.8
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.+++-+++|+|||-
T Consensus 10 ~i~v~G~~~~GKSs 23 (182)
T 1ky3_A 10 KVIILGDSGVGKTS 23 (182)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47788999999993
No 493
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=45.77 E-value=7.8 Score=27.46 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=11.3
Q ss_pred ceeeeCCCCCCch
Q psy14272 51 FGIFESPTGTGKS 63 (194)
Q Consensus 51 ~~I~ESPTGTGKT 63 (194)
.++|-+++|+|||
T Consensus 5 ~i~v~G~~~~GKS 17 (167)
T 1kao_A 5 KVVVLGSGGVGKS 17 (167)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3678889999999
No 494
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=45.69 E-value=7.6 Score=29.64 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.8
Q ss_pred CceeeeCCCCCCchH
Q psy14272 50 KFGIFESPTGTGKSL 64 (194)
Q Consensus 50 k~~I~ESPTGTGKTL 64 (194)
-.++|-+++|+|||-
T Consensus 13 ~~i~~~G~~g~GKTs 27 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTS 27 (218)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458899999999993
No 495
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=45.41 E-value=7.9 Score=27.70 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=13.1
Q ss_pred ceeeeCCCCCCchHHHHHH
Q psy14272 51 FGIFESPTGTGKSLSLICG 69 (194)
Q Consensus 51 ~~I~ESPTGTGKTLS~L~~ 69 (194)
.+++-+++|+||| |++-.
T Consensus 8 ~i~v~G~~~~GKS-sli~~ 25 (170)
T 1z0j_A 8 KVCLLGDTGVGKS-SIMWR 25 (170)
T ss_dssp EEEEECCTTSSHH-HHHHH
T ss_pred EEEEECcCCCCHH-HHHHH
Confidence 3677899999999 34433
No 496
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=45.20 E-value=7.9 Score=29.35 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=11.7
Q ss_pred ceeeeCCCCCCchH
Q psy14272 51 FGIFESPTGTGKSL 64 (194)
Q Consensus 51 ~~I~ESPTGTGKTL 64 (194)
.+++-+|+|+|||-
T Consensus 7 kv~lvG~~g~GKST 20 (199)
T 2f9l_A 7 KVVLIGDSGVGKSN 20 (199)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 36788999999993
No 497
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=45.03 E-value=8.1 Score=27.53 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=11.1
Q ss_pred eeeeCCCCCCchH
Q psy14272 52 GIFESPTGTGKSL 64 (194)
Q Consensus 52 ~I~ESPTGTGKTL 64 (194)
+++-+++|+|||-
T Consensus 6 i~v~G~~~~GKss 18 (170)
T 1ek0_A 6 LVLLGEAAVGKSS 18 (170)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6778899999993
No 498
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=44.58 E-value=9 Score=34.15 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.8
Q ss_pred HhcCCceeeeCCCCCCchHH
Q psy14272 46 LDNSKFGIFESPTGTGKSLS 65 (194)
Q Consensus 46 L~~gk~~I~ESPTGTGKTLS 65 (194)
+..|.++.+-+|+|+|||--
T Consensus 44 i~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCChHHHH
Confidence 35688999999999999953
No 499
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=44.51 E-value=4.6 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCceeeeCCCCCCchH
Q psy14272 38 FMKNLYYTLDNSKFGIFESPTGTGKSL 64 (194)
Q Consensus 38 ~M~~I~~~L~~gk~~I~ESPTGTGKTL 64 (194)
.++.+ -.+..|..+.+-+|.|+|||-
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKST 172 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSV 172 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHH
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHH
Confidence 55666 556788888889999999995
No 500
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=44.37 E-value=7.1 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=10.2
Q ss_pred CCceeeeCCCCCCchH
Q psy14272 49 SKFGIFESPTGTGKSL 64 (194)
Q Consensus 49 gk~~I~ESPTGTGKTL 64 (194)
..++.+.+|.|+|||-
T Consensus 5 ~~iIgItG~sGSGKST 20 (290)
T 1a7j_A 5 HPIISVTGSSGAGTST 20 (290)
T ss_dssp SCEEEEESCC---CCT
T ss_pred ceEEEEECCCCCCHHH
Confidence 3467889999999984
Done!