RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14272
(194 letters)
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.5 bits (62), Expect = 0.28
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 46 LDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78
L + + G GK+ + IL +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR 36
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 27.5 bits (60), Expect = 0.67
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 52 GIFESPTGTGKSLSLICGILKWYY 75
+PTG+GKS + Y
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGY 34
>d2i76a1 a.100.1.10 (A:155-257) Hypothetical protein TM1727
{Thermotoga maritima [TaxId: 2336]}
Length = 103
Score = 26.3 bits (58), Expect = 1.0
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 114 MRNQIDALKDALKSQKTYDELIENIRKQNEKRKK 147
+ + + + YDE+++ +R+ E ++
Sbjct: 70 VEEERREYEKIFGNTVLYDEIVKLLREVAESERR 103
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 206
Score = 26.9 bits (59), Expect = 1.6
Identities = 7/74 (9%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 64 LSLICGILKWYYDHKIVGLEKIEAKIKDLEISKNETVSEDWIEQQSFELKMRNQID-ALK 122
+ + + + +G ++ ++ ++ + +++ W + E Q++ A
Sbjct: 137 VGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEE-----QLEAAAI 191
Query: 123 DALKSQKTYDELIE 136
+ +D+L +
Sbjct: 192 EGWLIVNVWDQLSD 205
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA
{Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Length = 286
Score = 26.8 bits (58), Expect = 1.6
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 86 EAKIKDLEISKNETVSEDWIEQQSFELKMRNQIDALKDALK 126
+ I ++++E E S+ M+ +D + + L
Sbjct: 245 DTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGLA 285
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum
[TaxId: 1521]}
Length = 380
Score = 26.4 bits (57), Expect = 2.6
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYY 75
A I N ++ FG F+ + K +I G++K+ +
Sbjct: 330 AKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAF 376
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 92
Score = 24.7 bits (54), Expect = 3.9
Identities = 7/60 (11%), Positives = 22/60 (36%)
Query: 134 LIENIRKQNEKRKKSLRNDQEVKVHALTYRNRMDEKNSKEKRKEEERDGLENETQELDES 193
+ + + + S + +V + N + +++R ++E +EL +
Sbjct: 26 AARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDR 85
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 25.7 bits (55), Expect = 4.6
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 46 LDNSKFGIFESPTGTGKSLSLICGILK 72
+ I + G GK+ + I++
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus
subtilis [TaxId: 1423]}
Length = 377
Score = 25.3 bits (54), Expect = 5.3
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYYDHK 78
D +I + L + K +P G G++ I L ++Y ++
Sbjct: 319 GTDEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYR 369
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 138
Score = 24.6 bits (53), Expect = 6.0
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 78 KIVGLEKIEAKIKDLEISKNETVSEDWIEQQSFELKMRNQIDALKDALKSQKTYDELIEN 137
+ +KI+ K++D+ K + D Q KM L+ E+
Sbjct: 12 GLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGIMLPTPSED 71
Query: 138 IRKQNEKRKKSLRNDQEVKVHALTYRNRMDEKNSKEKRKEEERDGLENETQELDE 192
K E++ + ++++TY+ + + R +G E +E+ E
Sbjct: 72 QLKIGEEKIR----RWLAALNSMTYKELENPNIIDKSRMRRIAEGSGLEVEEVRE 122
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp.
pcc 6803 [TaxId: 1148]}
Length = 279
Score = 25.2 bits (54), Expect = 6.3
Identities = 3/42 (7%), Positives = 13/42 (30%)
Query: 86 EAKIKDLEISKNETVSEDWIEQQSFELKMRNQIDALKDALKS 127
+ +++S + +F + + + L +
Sbjct: 235 ATGARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGLLA 276
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 24.5 bits (52), Expect = 7.9
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 11 EFNEQRPLAEVPSEFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGI 70
EF + F D Q + K G PTG+GK+ + I
Sbjct: 51 EFVDNAADPIPTPYFDAEISLRDYQ----EKALERWLVDKRGCIVLPTGSGKTHVAMAAI 106
Query: 71 LKWYYDH 77
+
Sbjct: 107 NELSTPT 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.356
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,820
Number of extensions: 32391
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 30
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.7 bits)