BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14273
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
          Length = 620

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 51 FGI-FESPTGTGKSLSLICGILKWYSDHKIAGL 82
          +G+  ESPTG+GK++  +   L++ S+ K+  L
Sbjct: 23 YGVALESPTGSGKTIMALKSALQYSSERKLKVL 55


>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
          Length = 602

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 51 FGI-FESPTGTGKSLSLICGILKWYSDHKIAGL 82
          +G+  ESPTG+GK++  +   L++ S+ K+  L
Sbjct: 5  YGVALESPTGSGKTIMALKSALQYSSERKLKVL 37


>pdb|1ZGD|A Chain A, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
           Resolution
 pdb|1ZGD|B Chain B, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
           Resolution
          Length = 312

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 17  PLAEVPSEFPFPFDAYDIQSNFMKNLYYTLDNS-KFGIFES 56
           PL+  P +F FP D  D+    +K ++ +++ S K G+ ++
Sbjct: 122 PLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKA 162


>pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From
           C. Elegans Hsp70
 pdb|2P32|B Chain B, Crystal Structure Of The C-Terminal 10 Kda Subdomain From
           C. Elegans Hsp70
 pdb|2P32|C Chain C, Crystal Structure Of The C-Terminal 10 Kda Subdomain From
           C. Elegans Hsp70
 pdb|2P32|D Chain D, Crystal Structure Of The C-Terminal 10 Kda Subdomain From
           C. Elegans Hsp70
 pdb|2P32|E Chain E, Crystal Structure Of The C-Terminal 10 Kda Subdomain From
           C. Elegans Hsp70
 pdb|2P32|F Chain F, Crystal Structure Of The C-Terminal 10 Kda Subdomain From
           C. Elegans Hsp70
          Length = 120

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 41  NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAGLEKIEAEIKDLEISKNETV 100
           NL  T+++ K     SP    K       ILKW   ++ A  E+ E + KDLE   N  +
Sbjct: 29  NLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPII 88

Query: 101 S 101
           S
Sbjct: 89  S 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,645,014
Number of Sequences: 62578
Number of extensions: 140338
Number of successful extensions: 237
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)