Query psy14273
Match_columns 115
No_of_seqs 103 out of 1033
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 15:39:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 99.4 2.4E-13 8.2E-18 116.5 5.8 53 29-81 2-54 (620)
2 3crv_A XPD/RAD3 related DNA he 99.2 1.1E-11 3.8E-16 103.7 6.5 45 28-72 1-45 (551)
3 2vl7_A XPD; helicase, unknown 99.2 2E-11 7E-16 102.2 5.4 47 27-73 4-50 (540)
4 3fe2_A Probable ATP-dependent 98.9 1.6E-09 5.6E-14 80.5 5.9 47 26-76 46-93 (242)
5 3iuy_A Probable ATP-dependent 98.9 1.7E-09 6E-14 79.2 5.8 47 26-76 37-84 (228)
6 1vec_A ATP-dependent RNA helic 98.9 2.5E-09 8.6E-14 76.6 6.0 47 26-76 20-67 (206)
7 3dkp_A Probable ATP-dependent 98.9 3.6E-09 1.2E-13 78.2 6.4 47 26-76 46-93 (245)
8 1wrb_A DJVLGB; RNA helicase, D 98.8 5.1E-09 1.8E-13 77.9 6.5 48 26-77 40-88 (253)
9 1qde_A EIF4A, translation init 98.8 3.8E-09 1.3E-13 76.8 5.3 48 26-77 31-79 (224)
10 2pl3_A Probable ATP-dependent 98.8 6.9E-09 2.4E-13 76.3 6.6 46 27-76 43-89 (236)
11 2gxq_A Heat resistant RNA depe 98.8 6.2E-09 2.1E-13 74.5 5.9 46 27-76 19-65 (207)
12 3ber_A Probable ATP-dependent 98.8 8.3E-09 2.8E-13 77.8 6.5 49 26-78 60-109 (249)
13 2oxc_A Probable ATP-dependent 98.8 7.5E-09 2.6E-13 76.4 5.9 47 26-76 41-88 (230)
14 3ly5_A ATP-dependent RNA helic 98.8 8.1E-09 2.8E-13 78.3 6.2 46 27-76 72-118 (262)
15 1t6n_A Probable ATP-dependent 98.8 8.1E-09 2.8E-13 75.0 5.9 48 26-77 31-79 (220)
16 2i4i_A ATP-dependent RNA helic 98.8 8.8E-09 3E-13 80.3 6.1 48 27-78 33-81 (417)
17 1q0u_A Bstdead; DEAD protein, 98.8 4.3E-09 1.5E-13 76.8 4.0 47 27-77 22-69 (219)
18 2db3_A ATP-dependent RNA helic 98.7 1.6E-08 5.4E-13 81.6 6.5 47 27-77 74-121 (434)
19 3oiy_A Reverse gyrase helicase 98.7 7.3E-09 2.5E-13 81.8 4.3 47 26-76 17-63 (414)
20 3bor_A Human initiation factor 98.7 6.7E-09 2.3E-13 77.1 3.7 47 26-76 47-94 (237)
21 3fmo_B ATP-dependent RNA helic 98.7 1.4E-08 4.6E-13 79.1 5.4 49 27-79 110-161 (300)
22 3tbk_A RIG-I helicase domain; 98.7 2E-08 6.8E-13 80.4 6.3 46 28-77 2-47 (555)
23 3i5x_A ATP-dependent RNA helic 98.7 1.3E-08 4.4E-13 83.5 5.1 50 26-78 89-140 (563)
24 3b6e_A Interferon-induced heli 98.7 1.9E-08 6.4E-13 71.8 5.3 48 26-77 29-76 (216)
25 3fht_A ATP-dependent RNA helic 98.7 1.2E-08 4.2E-13 78.9 4.6 51 26-78 42-93 (412)
26 3sqw_A ATP-dependent RNA helic 98.7 1.4E-08 4.8E-13 84.5 5.0 50 26-78 38-89 (579)
27 2z0m_A 337AA long hypothetical 98.7 3.1E-08 1E-12 74.5 6.2 43 26-72 11-54 (337)
28 3pey_A ATP-dependent RNA helic 98.7 2E-08 7E-13 76.9 4.8 48 27-76 23-71 (395)
29 2j0s_A ATP-dependent RNA helic 98.6 2.2E-08 7.6E-13 78.2 5.0 45 27-75 55-100 (410)
30 1xti_A Probable ATP-dependent 98.6 2.8E-08 9.6E-13 76.6 5.2 46 27-76 26-72 (391)
31 1s2m_A Putative ATP-dependent 98.6 3.6E-08 1.2E-12 76.6 5.6 46 27-76 39-85 (400)
32 3eiq_A Eukaryotic initiation f 98.6 3.9E-08 1.3E-12 76.3 5.4 47 26-76 57-104 (414)
33 4a2p_A RIG-I, retinoic acid in 98.6 5E-08 1.7E-12 78.5 5.8 47 27-77 4-50 (556)
34 1fuu_A Yeast initiation factor 98.6 2.5E-08 8.6E-13 76.7 3.8 47 27-77 39-86 (394)
35 1hv8_A Putative ATP-dependent 98.6 5.7E-08 2E-12 73.7 5.4 47 27-76 24-71 (367)
36 2v1x_A ATP-dependent DNA helic 98.6 4.3E-08 1.5E-12 83.5 4.7 44 25-72 38-82 (591)
37 3fmp_B ATP-dependent RNA helic 98.6 2.7E-08 9.2E-13 80.3 3.0 50 27-78 110-160 (479)
38 4gl2_A Interferon-induced heli 98.5 1.1E-07 3.9E-12 79.6 5.5 47 28-78 5-51 (699)
39 1gm5_A RECG; helicase, replica 98.5 1.9E-07 6.6E-12 82.4 6.4 52 26-77 364-417 (780)
40 2ykg_A Probable ATP-dependent 98.4 2E-07 6.9E-12 78.1 5.9 49 25-77 7-56 (696)
41 1oyw_A RECQ helicase, ATP-depe 98.4 7E-08 2.4E-12 80.5 3.0 44 25-72 19-63 (523)
42 2eyq_A TRCF, transcription-rep 98.4 4.7E-07 1.6E-11 82.5 7.0 53 25-77 598-652 (1151)
43 2oca_A DAR protein, ATP-depend 98.3 3.8E-07 1.3E-11 73.9 4.9 47 28-78 111-157 (510)
44 4a4z_A Antiviral helicase SKI2 98.3 6E-07 2.1E-11 80.8 6.7 50 23-76 32-81 (997)
45 3l9o_A ATP-dependent RNA helic 98.3 5.3E-07 1.8E-11 82.0 6.2 52 23-78 177-228 (1108)
46 2fwr_A DNA repair protein RAD2 98.3 7.1E-07 2.4E-11 71.7 6.1 46 24-73 87-132 (472)
47 4a2q_A RIG-I, retinoic acid in 98.3 6.4E-07 2.2E-11 77.6 6.0 45 29-77 247-291 (797)
48 2xgj_A ATP-dependent RNA helic 98.3 5.3E-07 1.8E-11 81.4 5.5 50 24-77 80-129 (1010)
49 1wp9_A ATP-dependent RNA helic 98.3 3.8E-07 1.3E-11 70.5 3.3 45 29-78 8-52 (494)
50 2fz4_A DNA repair protein RAD2 98.3 1.6E-06 5.4E-11 65.2 6.6 45 24-72 87-131 (237)
51 3h1t_A Type I site-specific re 98.3 1.4E-06 4.7E-11 72.4 6.8 47 29-75 177-224 (590)
52 2va8_A SSO2462, SKI2-type heli 98.3 6.2E-07 2.1E-11 76.3 4.7 51 27-80 26-77 (715)
53 1rif_A DAR protein, DNA helica 98.2 1.5E-06 5E-11 66.0 5.6 45 29-77 112-156 (282)
54 2zj8_A DNA helicase, putative 98.2 6.7E-07 2.3E-11 76.3 3.6 51 27-80 19-70 (720)
55 3fho_A ATP-dependent RNA helic 98.2 2E-07 6.9E-12 76.8 0.1 47 28-77 138-186 (508)
56 4ddu_A Reverse gyrase; topoiso 98.2 1.5E-06 5.2E-11 79.0 5.4 47 26-76 74-120 (1104)
57 4a2w_A RIG-I, retinoic acid in 98.1 1.6E-06 5.4E-11 77.1 4.6 46 28-77 246-291 (936)
58 2p6r_A Afuhel308 helicase; pro 98.1 5.6E-07 1.9E-11 76.7 1.1 46 27-76 21-67 (702)
59 3llm_A ATP-dependent RNA helic 98.1 2.5E-06 8.5E-11 63.3 4.5 48 27-78 58-105 (235)
60 1gku_B Reverse gyrase, TOP-RG; 98.0 4.4E-06 1.5E-10 75.4 5.2 49 26-80 53-101 (1054)
61 4f92_B U5 small nuclear ribonu 98.0 6.5E-06 2.2E-10 78.0 6.4 49 26-77 73-123 (1724)
62 4f92_B U5 small nuclear ribonu 97.9 1.5E-05 5E-10 75.6 6.8 48 28-78 923-971 (1724)
63 2z83_A Helicase/nucleoside tri 97.9 3.1E-06 1E-10 69.3 1.6 38 43-80 15-52 (459)
64 1z63_A Helicase of the SNF2/RA 97.8 3.4E-05 1.2E-09 62.2 7.1 48 27-74 34-81 (500)
65 1tf5_A Preprotein translocase 97.8 1.5E-05 5.2E-10 71.5 5.0 41 27-73 80-120 (844)
66 1yks_A Genome polyprotein [con 97.8 6E-06 2E-10 67.3 2.2 35 45-79 4-38 (440)
67 2wv9_A Flavivirin protease NS2 97.7 1.6E-06 5.4E-11 75.3 -3.0 50 31-80 216-272 (673)
68 2v6i_A RNA helicase; membrane, 97.7 1.8E-05 6.1E-10 64.3 3.1 32 49-80 2-33 (431)
69 2jlq_A Serine protease subunit 97.7 1.5E-05 5.1E-10 64.9 2.3 35 46-80 16-50 (451)
70 2w00_A HSDR, R.ECOR124I; ATP-b 97.6 4.1E-05 1.4E-09 69.7 4.7 46 30-76 271-326 (1038)
71 2fsf_A Preprotein translocase 97.6 6.3E-05 2.2E-09 67.7 5.0 42 27-74 71-112 (853)
72 3upu_A ATP-dependent DNA helic 97.5 0.00017 5.7E-09 58.8 7.0 55 24-79 18-74 (459)
73 1nkt_A Preprotein translocase 97.5 5.7E-05 2E-09 68.4 4.5 43 26-74 107-149 (922)
74 2whx_A Serine protease/ntpase/ 97.5 3.1E-05 1.1E-09 66.3 2.4 38 43-80 180-217 (618)
75 2ipc_A Preprotein translocase 97.3 0.00021 7.2E-09 65.2 4.8 42 26-73 75-116 (997)
76 3mwy_W Chromo domain-containin 97.2 0.0007 2.4E-08 59.0 6.6 46 29-74 235-280 (800)
77 3dmq_A RNA polymerase-associat 97.1 0.00055 1.9E-08 61.2 6.0 50 26-77 149-198 (968)
78 4b3f_X DNA-binding protein smu 97.0 0.0012 4E-08 56.1 6.5 47 31-81 190-236 (646)
79 1z3i_X Similar to RAD54-like; 97.0 0.00096 3.3E-08 56.8 5.9 48 29-76 54-106 (644)
80 2xau_A PRE-mRNA-splicing facto 96.9 0.00052 1.8E-08 60.2 3.8 37 31-72 94-130 (773)
81 3ec2_A DNA replication protein 96.8 0.0031 1.1E-07 44.2 6.2 35 32-66 16-55 (180)
82 3n70_A Transport activator; si 96.8 0.0015 5.2E-08 44.9 4.5 33 33-65 8-40 (145)
83 2w58_A DNAI, primosome compone 96.8 0.002 6.9E-08 45.7 5.3 34 33-66 32-71 (202)
84 3co5_A Putative two-component 96.6 0.0019 6.6E-08 44.4 4.2 33 33-65 11-43 (143)
85 1jbk_A CLPB protein; beta barr 96.6 0.0019 6.5E-08 43.8 3.8 33 34-66 26-60 (195)
86 1njg_A DNA polymerase III subu 96.5 0.0016 5.6E-08 45.4 2.9 33 34-66 27-62 (250)
87 2r44_A Uncharacterized protein 96.5 0.0012 4.2E-08 50.5 2.5 33 33-65 30-62 (331)
88 2chg_A Replication factor C sm 96.5 0.002 6.9E-08 44.6 3.4 33 34-66 21-55 (226)
89 1w36_D RECD, exodeoxyribonucle 96.4 0.0028 9.4E-08 54.0 4.2 38 32-73 151-190 (608)
90 3o8b_A HCV NS3 protease/helica 96.4 0.0013 4.3E-08 57.6 2.2 28 45-72 228-255 (666)
91 2p65_A Hypothetical protein PF 96.3 0.0023 7.8E-08 43.6 2.9 33 34-66 26-60 (187)
92 1ofh_A ATP-dependent HSL prote 96.2 0.0034 1.2E-07 46.7 3.7 18 49-66 50-67 (310)
93 3rc3_A ATP-dependent RNA helic 96.2 0.0017 5.9E-08 56.5 2.4 26 48-77 154-179 (677)
94 1sxj_C Activator 1 40 kDa subu 96.2 0.0037 1.3E-07 48.4 4.0 36 34-69 29-66 (340)
95 1iqp_A RFCS; clamp loader, ext 96.2 0.0037 1.3E-07 46.7 3.8 39 29-67 24-64 (327)
96 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0023 7.9E-08 53.8 2.9 32 34-65 26-57 (500)
97 2bjv_A PSP operon transcriptio 96.2 0.0052 1.8E-07 45.6 4.5 33 33-65 13-45 (265)
98 3hws_A ATP-dependent CLP prote 96.2 0.0041 1.4E-07 48.6 4.1 33 34-66 19-68 (363)
99 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0041 1.4E-07 46.9 3.7 17 50-66 39-55 (324)
100 1sxj_D Activator 1 41 kDa subu 96.1 0.0021 7.2E-08 48.9 2.0 35 33-67 40-76 (353)
101 2qgz_A Helicase loader, putati 96.0 0.012 4.1E-07 45.8 6.0 35 33-67 131-170 (308)
102 4fcw_A Chaperone protein CLPB; 96.0 0.003 1E-07 47.4 2.3 34 34-67 21-65 (311)
103 3bos_A Putative DNA replicatio 96.0 0.0071 2.4E-07 42.9 4.2 33 34-66 35-69 (242)
104 1a5t_A Delta prime, HOLB; zinc 96.0 0.0074 2.5E-07 47.0 4.6 39 31-69 3-44 (334)
105 2gk6_A Regulator of nonsense t 95.9 0.0077 2.6E-07 51.1 4.9 47 31-81 181-227 (624)
106 3te6_A Regulatory protein SIR3 95.8 0.0062 2.1E-07 48.6 3.6 38 32-69 25-65 (318)
107 3e1s_A Exodeoxyribonuclease V, 95.8 0.012 4E-07 50.0 5.4 49 28-81 187-235 (574)
108 3pfi_A Holliday junction ATP-d 95.7 0.0046 1.6E-07 47.2 2.3 33 34-66 33-72 (338)
109 2qen_A Walker-type ATPase; unk 95.7 0.0062 2.1E-07 45.7 3.0 32 31-65 16-47 (350)
110 1g8p_A Magnesium-chelatase 38 95.6 0.0037 1.3E-07 47.6 1.6 39 27-65 21-61 (350)
111 3jux_A Protein translocase sub 95.6 0.015 5.2E-07 52.2 5.5 43 26-74 71-113 (822)
112 1ojl_A Transcriptional regulat 95.6 0.011 3.8E-07 45.8 4.1 33 33-65 9-41 (304)
113 3h4m_A Proteasome-activating n 95.6 0.0066 2.3E-07 45.1 2.7 18 49-66 51-68 (285)
114 2chq_A Replication factor C sm 95.6 0.006 2.1E-07 45.4 2.5 35 33-67 20-56 (319)
115 3uk6_A RUVB-like 2; hexameric 95.5 0.021 7.3E-07 43.8 5.6 37 31-67 48-88 (368)
116 1p9r_A General secretion pathw 95.5 0.012 3.9E-07 48.5 4.0 42 33-77 153-194 (418)
117 3b9p_A CG5977-PA, isoform A; A 95.4 0.0093 3.2E-07 44.7 3.1 18 49-66 54-71 (297)
118 1jr3_A DNA polymerase III subu 95.3 0.013 4.4E-07 44.8 3.6 34 33-66 19-55 (373)
119 2xzl_A ATP-dependent helicase 95.3 0.014 4.7E-07 51.6 4.2 36 31-70 361-396 (802)
120 3syl_A Protein CBBX; photosynt 95.2 0.015 5.2E-07 43.6 3.7 18 50-67 68-85 (309)
121 2v1u_A Cell division control p 95.2 0.009 3.1E-07 45.4 2.5 33 34-66 23-61 (387)
122 1sxj_B Activator 1 37 kDa subu 95.2 0.014 4.9E-07 43.4 3.6 34 34-67 25-60 (323)
123 1in4_A RUVB, holliday junction 95.2 0.018 6.3E-07 44.7 4.2 33 34-66 29-68 (334)
124 2wjy_A Regulator of nonsense t 95.1 0.019 6.4E-07 50.8 4.5 46 31-81 357-403 (800)
125 2qby_B CDC6 homolog 3, cell di 95.1 0.016 5.6E-07 44.4 3.6 17 50-66 46-62 (384)
126 2oap_1 GSPE-2, type II secreti 95.1 0.019 6.7E-07 48.2 4.3 36 38-74 249-284 (511)
127 1ry6_A Internal kinesin; kines 95.0 0.015 5.1E-07 47.3 3.3 40 29-68 58-104 (360)
128 3k1j_A LON protease, ATP-depen 95.0 0.019 6.5E-07 48.5 4.0 34 33-66 44-77 (604)
129 2qz4_A Paraplegin; AAA+, SPG7, 94.9 0.051 1.7E-06 39.5 5.8 17 50-66 40-56 (262)
130 2c9o_A RUVB-like 1; hexameric 94.9 0.04 1.4E-06 44.7 5.7 36 33-68 43-82 (456)
131 1um8_A ATP-dependent CLP prote 94.9 0.023 7.8E-07 44.4 4.1 18 49-66 72-89 (376)
132 1lv7_A FTSH; alpha/beta domain 94.8 0.043 1.5E-06 40.4 5.2 16 50-65 46-61 (257)
133 3u61_B DNA polymerase accessor 94.8 0.02 6.9E-07 43.5 3.5 37 32-68 28-67 (324)
134 1sxj_A Activator 1 95 kDa subu 94.8 0.022 7.7E-07 47.0 3.9 34 34-67 43-95 (516)
135 3pvs_A Replication-associated 94.8 0.012 4.2E-07 48.4 2.2 38 29-66 25-67 (447)
136 3pxg_A Negative regulator of g 94.7 0.022 7.6E-07 46.7 3.6 39 29-67 179-219 (468)
137 3vfd_A Spastin; ATPase, microt 94.7 0.016 5.6E-07 45.8 2.7 38 29-66 114-165 (389)
138 1f9v_A Kinesin-like protein KA 94.6 0.017 5.7E-07 46.6 2.7 44 24-67 53-103 (347)
139 1fnn_A CDC6P, cell division co 94.6 0.019 6.3E-07 43.9 2.8 16 51-66 46-61 (389)
140 2gza_A Type IV secretion syste 94.5 0.039 1.3E-06 43.9 4.5 26 40-65 166-191 (361)
141 1l8q_A Chromosomal replication 94.5 0.045 1.5E-06 41.7 4.7 33 34-66 18-54 (324)
142 1sxj_E Activator 1 40 kDa subu 94.5 0.014 4.8E-07 44.6 1.8 34 34-67 18-54 (354)
143 1tue_A Replication protein E1; 94.5 0.037 1.3E-06 42.4 4.1 31 38-68 44-77 (212)
144 4etp_A Kinesin-like protein KA 94.5 0.017 5.8E-07 47.5 2.4 43 25-67 110-159 (403)
145 3pxi_A Negative regulator of g 94.5 0.02 6.7E-07 49.3 2.9 34 34-67 495-539 (758)
146 3d8b_A Fidgetin-like protein 1 94.4 0.025 8.7E-07 44.4 3.3 18 49-66 117-134 (357)
147 3lfu_A DNA helicase II; SF1 he 94.4 0.035 1.2E-06 46.0 4.1 40 31-76 10-49 (647)
148 2rep_A Kinesin-like protein KI 94.4 0.02 6.8E-07 46.8 2.6 43 25-67 85-134 (376)
149 2gno_A DNA polymerase III, gam 94.3 0.031 1.1E-06 43.7 3.4 36 34-69 1-38 (305)
150 1t5c_A CENP-E protein, centrom 94.2 0.022 7.6E-07 46.0 2.5 44 23-66 44-95 (349)
151 3eie_A Vacuolar protein sortin 94.1 0.026 8.9E-07 43.5 2.7 17 50-66 52-68 (322)
152 1d2n_A N-ethylmaleimide-sensit 94.1 0.13 4.5E-06 38.1 6.5 17 50-66 65-81 (272)
153 3cf0_A Transitional endoplasmi 94.1 0.073 2.5E-06 40.6 5.2 18 49-66 49-66 (301)
154 3pxi_A Negative regulator of g 94.1 0.039 1.3E-06 47.5 3.9 38 29-66 179-218 (758)
155 2r62_A Cell division protease 94.1 0.019 6.4E-07 42.4 1.7 17 50-66 45-61 (268)
156 2b8t_A Thymidine kinase; deoxy 94.0 0.038 1.3E-06 41.8 3.3 34 47-81 10-43 (223)
157 1c4o_A DNA nucleotide excision 93.9 0.071 2.4E-06 45.8 5.3 41 26-66 4-45 (664)
158 2qby_A CDC6 homolog 1, cell di 93.9 0.03 1E-06 42.3 2.7 33 31-66 24-62 (386)
159 3dc4_A Kinesin-like protein NO 93.9 0.03 1E-06 45.2 2.8 45 22-66 60-112 (344)
160 1r6b_X CLPA protein; AAA+, N-t 93.9 0.024 8.1E-07 48.6 2.2 33 34-66 462-505 (758)
161 3cob_A Kinesin heavy chain-lik 93.9 0.022 7.6E-07 46.5 1.9 38 29-66 55-97 (369)
162 2qp9_X Vacuolar protein sortin 93.8 0.034 1.2E-06 43.8 2.8 17 50-66 85-101 (355)
163 2zan_A Vacuolar protein sortin 93.7 0.043 1.5E-06 44.6 3.4 17 50-66 168-184 (444)
164 2h58_A Kinesin-like protein KI 93.6 0.016 5.6E-07 46.4 0.7 39 29-67 56-99 (330)
165 3t0q_A AGR253WP; kinesin, alph 93.6 0.034 1.2E-06 44.8 2.5 39 29-67 61-104 (349)
166 1bg2_A Kinesin; motor protein, 93.5 0.021 7.2E-07 45.7 1.2 46 22-67 43-96 (325)
167 1x88_A Kinesin-like protein KI 93.5 0.022 7.5E-07 46.2 1.3 39 29-67 63-107 (359)
168 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.055 1.9E-06 42.0 3.5 17 50-66 46-62 (322)
169 2y65_A Kinesin, kinesin heavy 93.5 0.024 8.3E-07 46.1 1.5 46 22-67 50-103 (365)
170 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.064 2.2E-06 42.3 3.9 28 37-64 159-186 (330)
171 2kjq_A DNAA-related protein; s 93.4 0.033 1.1E-06 38.9 2.0 18 48-65 35-52 (149)
172 4a14_A Kinesin, kinesin-like p 93.4 0.046 1.6E-06 43.9 2.9 44 24-67 51-102 (344)
173 2zts_A Putative uncharacterize 93.4 0.049 1.7E-06 39.0 2.8 35 47-81 28-62 (251)
174 1qvr_A CLPB protein; coiled co 93.3 0.026 8.8E-07 49.5 1.5 33 34-66 562-605 (854)
175 1uaa_A REP helicase, protein ( 93.3 0.089 3E-06 44.5 4.7 40 31-76 3-42 (673)
176 1u0j_A DNA replication protein 93.3 0.11 3.7E-06 40.7 4.9 30 38-67 89-122 (267)
177 2wbe_C Bipolar kinesin KRP-130 93.3 0.029 9.8E-07 45.8 1.6 44 24-67 68-119 (373)
178 2vvg_A Kinesin-2; motor protei 93.1 0.046 1.6E-06 44.2 2.6 43 24-66 57-107 (350)
179 3b6u_A Kinesin-like protein KI 93.0 0.028 9.4E-07 46.0 1.1 44 24-67 69-120 (372)
180 1goj_A Kinesin, kinesin heavy 92.9 0.031 1.1E-06 45.2 1.3 45 24-68 48-100 (355)
181 3tr0_A Guanylate kinase, GMP k 92.9 0.048 1.6E-06 38.2 2.2 19 47-65 5-23 (205)
182 2eyu_A Twitching motility prot 92.9 0.054 1.8E-06 41.3 2.6 26 38-65 16-41 (261)
183 1ixz_A ATP-dependent metallopr 92.9 0.2 7E-06 36.6 5.7 15 51-65 51-65 (254)
184 4akg_A Glutathione S-transfera 92.9 0.14 4.6E-06 51.1 5.9 37 29-65 1247-1283(2695)
185 4h1g_A Maltose binding protein 92.8 0.047 1.6E-06 47.1 2.4 38 29-66 438-480 (715)
186 3bfn_A Kinesin-like protein KI 92.8 0.042 1.4E-06 45.2 2.0 38 29-66 73-116 (388)
187 2w0m_A SSO2452; RECA, SSPF, un 92.8 0.078 2.7E-06 37.3 3.2 25 45-69 19-43 (235)
188 1kgd_A CASK, peripheral plasma 92.8 0.046 1.6E-06 38.5 1.9 18 48-65 4-21 (180)
189 3lre_A Kinesin-like protein KI 92.8 0.024 8.3E-07 45.8 0.5 43 25-67 74-124 (355)
190 3u06_A Protein claret segregat 92.8 0.035 1.2E-06 45.9 1.5 43 24-66 107-156 (412)
191 1e9r_A Conjugal transfer prote 92.7 0.065 2.2E-06 42.7 2.9 31 49-80 53-83 (437)
192 2j41_A Guanylate kinase; GMP, 92.6 0.056 1.9E-06 37.8 2.2 19 47-65 4-22 (207)
193 2dr3_A UPF0273 protein PH0284; 92.6 0.074 2.5E-06 38.0 2.8 29 46-74 20-48 (247)
194 3lw7_A Adenylate kinase relate 92.5 0.049 1.7E-06 36.4 1.7 15 50-64 2-16 (179)
195 1r6b_X CLPA protein; AAA+, N-t 92.5 0.069 2.4E-06 45.7 3.0 38 29-66 185-224 (758)
196 1cr0_A DNA primase/helicase; R 92.3 0.063 2.2E-06 40.4 2.3 40 39-78 25-64 (296)
197 3tau_A Guanylate kinase, GMP k 92.3 0.068 2.3E-06 38.6 2.4 18 48-65 7-24 (208)
198 1v8k_A Kinesin-like protein KI 92.3 0.034 1.2E-06 46.1 0.8 40 29-68 129-174 (410)
199 3vkg_A Dynein heavy chain, cyt 92.3 0.22 7.6E-06 50.4 6.5 37 29-65 1284-1320(3245)
200 2d7d_A Uvrabc system protein B 92.3 0.16 5.6E-06 43.5 5.0 43 24-66 6-49 (661)
201 4b4t_L 26S protease subunit RP 92.2 0.2 6.7E-06 41.6 5.3 35 32-66 186-232 (437)
202 1g41_A Heat shock protein HSLU 92.1 0.11 3.9E-06 43.2 3.7 17 50-66 51-67 (444)
203 1iy2_A ATP-dependent metallopr 92.0 0.3 1E-05 36.4 5.7 35 31-65 44-89 (278)
204 4b4t_K 26S protease regulatory 92.0 0.22 7.6E-06 41.1 5.4 35 32-66 177-223 (428)
205 3f9v_A Minichromosome maintena 92.0 0.043 1.5E-06 46.7 1.1 31 35-65 300-343 (595)
206 2bwj_A Adenylate kinase 5; pho 92.0 0.061 2.1E-06 37.4 1.7 20 46-65 9-28 (199)
207 3hu3_A Transitional endoplasmi 91.9 0.14 4.9E-06 42.6 4.2 17 50-66 239-255 (489)
208 1qvr_A CLPB protein; coiled co 91.9 0.097 3.3E-06 45.8 3.3 38 29-66 169-208 (854)
209 1pjr_A PCRA; DNA repair, DNA r 91.9 0.17 5.8E-06 43.5 4.7 40 31-76 12-51 (724)
210 2ehv_A Hypothetical protein PH 91.9 0.11 3.7E-06 37.2 3.0 25 45-69 26-50 (251)
211 3t15_A Ribulose bisphosphate c 91.9 0.084 2.9E-06 40.4 2.5 16 50-65 37-52 (293)
212 4b4t_M 26S protease regulatory 91.9 0.09 3.1E-06 43.7 2.8 17 50-66 216-232 (434)
213 2heh_A KIF2C protein; kinesin, 91.8 0.092 3.2E-06 43.2 2.9 40 29-68 109-154 (387)
214 2px0_A Flagellar biosynthesis 91.8 0.11 3.7E-06 40.4 3.1 33 49-81 105-137 (296)
215 1kht_A Adenylate kinase; phosp 91.8 0.075 2.6E-06 36.5 2.0 16 49-64 3-18 (192)
216 3jvv_A Twitching mobility prot 91.7 0.13 4.6E-06 41.1 3.7 30 47-77 121-150 (356)
217 2ius_A DNA translocase FTSK; n 91.6 0.13 4.5E-06 43.5 3.7 27 48-74 166-192 (512)
218 3vaa_A Shikimate kinase, SK; s 91.6 0.082 2.8E-06 37.6 2.1 20 46-65 22-41 (199)
219 2orw_A Thymidine kinase; TMTK, 91.5 0.15 5.3E-06 36.6 3.5 27 49-75 3-29 (184)
220 1n0w_A DNA repair protein RAD5 91.3 0.1 3.5E-06 37.3 2.3 27 46-72 21-47 (243)
221 1lvg_A Guanylate kinase, GMP k 91.3 0.099 3.4E-06 37.6 2.3 18 48-65 3-20 (198)
222 4b4t_I 26S protease regulatory 91.2 0.29 9.8E-06 41.0 5.3 35 32-66 187-233 (437)
223 1w5s_A Origin recognition comp 91.2 0.11 3.7E-06 40.0 2.5 36 31-66 26-69 (412)
224 3trf_A Shikimate kinase, SK; a 91.2 0.089 3E-06 36.4 1.9 17 49-65 5-21 (185)
225 2qor_A Guanylate kinase; phosp 91.1 0.076 2.6E-06 37.9 1.4 19 46-64 9-27 (204)
226 1xx6_A Thymidine kinase; NESG, 91.0 0.16 5.5E-06 37.2 3.2 33 48-81 7-39 (191)
227 1zp6_A Hypothetical protein AT 91.0 0.053 1.8E-06 37.7 0.6 19 46-64 6-24 (191)
228 2cvh_A DNA repair and recombin 91.0 0.12 4.2E-06 36.3 2.4 23 46-68 17-39 (220)
229 2z4s_A Chromosomal replication 90.9 0.25 8.7E-06 40.1 4.6 29 38-66 116-147 (440)
230 3lnc_A Guanylate kinase, GMP k 90.9 0.069 2.4E-06 38.8 1.1 19 47-65 25-43 (231)
231 4b4t_J 26S protease regulatory 90.9 0.13 4.5E-06 42.5 2.9 34 32-65 153-198 (405)
232 2r6a_A DNAB helicase, replicat 90.8 0.12 4.3E-06 41.9 2.7 42 40-81 194-235 (454)
233 1z6g_A Guanylate kinase; struc 90.8 0.13 4.5E-06 37.6 2.5 24 41-64 15-38 (218)
234 2c95_A Adenylate kinase 1; tra 90.7 0.15 5E-06 35.3 2.6 19 46-64 6-24 (196)
235 2ewv_A Twitching motility prot 90.7 0.084 2.9E-06 42.2 1.5 30 46-76 133-162 (372)
236 2zfi_A Kinesin-like protein KI 90.6 0.11 3.9E-06 42.1 2.2 35 33-67 68-108 (366)
237 2v54_A DTMP kinase, thymidylat 90.5 0.12 4.2E-06 36.1 2.1 18 48-65 3-20 (204)
238 4akg_A Glutathione S-transfera 90.4 0.3 1E-05 48.7 5.2 40 29-68 903-942 (2695)
239 3a00_A Guanylate kinase, GMP k 90.4 0.15 5E-06 36.0 2.4 16 50-65 2-17 (186)
240 3kb2_A SPBC2 prophage-derived 90.3 0.14 4.6E-06 34.6 2.1 15 51-65 3-17 (173)
241 3iij_A Coilin-interacting nucl 90.3 0.16 5.4E-06 35.2 2.5 18 48-65 10-27 (180)
242 3ney_A 55 kDa erythrocyte memb 90.3 0.12 4.1E-06 38.4 1.9 17 48-64 18-34 (197)
243 3gbj_A KIF13B protein; kinesin 90.2 0.1 3.5E-06 42.1 1.7 35 32-66 70-110 (354)
244 4a74_A DNA repair and recombin 90.2 0.11 3.7E-06 36.8 1.6 25 45-69 21-45 (231)
245 1znw_A Guanylate kinase, GMP k 90.2 0.16 5.3E-06 36.4 2.4 21 45-65 16-36 (207)
246 2fna_A Conserved hypothetical 90.2 0.33 1.1E-05 36.1 4.3 31 30-65 16-46 (357)
247 3cm0_A Adenylate kinase; ATP-b 90.2 0.087 3E-06 36.4 1.0 18 48-65 3-20 (186)
248 3nwn_A Kinesin-like protein KI 90.1 0.17 5.7E-06 41.1 2.8 35 33-67 83-123 (359)
249 3kta_A Chromosome segregation 90.1 0.22 7.6E-06 34.4 3.1 23 51-75 28-50 (182)
250 2owm_A Nckin3-434, related to 90.1 0.16 5.4E-06 42.3 2.7 36 32-67 114-155 (443)
251 4gp7_A Metallophosphoesterase; 90.1 0.092 3.2E-06 36.8 1.1 21 47-67 7-27 (171)
252 1f2t_A RAD50 ABC-ATPase; DNA d 90.0 0.21 7.3E-06 34.7 3.0 24 50-75 24-47 (149)
253 1ly1_A Polynucleotide kinase; 90.0 0.12 4.2E-06 35.1 1.7 14 51-64 4-17 (181)
254 2ce7_A Cell division protein F 90.0 0.37 1.3E-05 40.2 4.9 17 50-66 50-66 (476)
255 3b85_A Phosphate starvation-in 89.9 0.33 1.1E-05 35.8 4.1 29 33-65 10-38 (208)
256 4edh_A DTMP kinase, thymidylat 89.8 0.21 7.1E-06 37.0 2.9 28 48-76 5-32 (213)
257 2jaq_A Deoxyguanosine kinase; 89.8 0.13 4.4E-06 35.7 1.7 14 51-64 2-15 (205)
258 4tmk_A Protein (thymidylate ki 89.7 0.29 9.9E-06 36.3 3.7 30 48-78 2-31 (213)
259 2plr_A DTMP kinase, probable t 89.7 0.12 4E-06 36.1 1.4 17 49-65 4-20 (213)
260 2q6t_A DNAB replication FORK h 89.7 0.15 5.2E-06 41.2 2.3 42 40-81 191-232 (444)
261 3a8t_A Adenylate isopentenyltr 89.6 0.18 6E-06 40.8 2.6 17 49-65 40-56 (339)
262 1zak_A Adenylate kinase; ATP:A 89.6 0.13 4.3E-06 37.0 1.6 17 48-64 4-20 (222)
263 1qhx_A CPT, protein (chloramph 89.6 0.18 6.2E-06 34.5 2.3 17 49-65 3-19 (178)
264 4b4t_H 26S protease regulatory 89.6 0.16 5.6E-06 42.8 2.4 16 50-65 244-259 (467)
265 1xjc_A MOBB protein homolog; s 89.5 0.27 9.3E-06 35.7 3.3 31 50-81 5-35 (169)
266 3cpe_A Terminase, DNA packagin 89.5 0.51 1.8E-05 39.7 5.4 49 26-78 159-207 (592)
267 1gvn_B Zeta; postsegregational 89.5 0.33 1.1E-05 37.2 3.9 15 50-64 34-48 (287)
268 1zd8_A GTP:AMP phosphotransfer 89.4 0.14 4.6E-06 37.1 1.6 18 48-65 6-23 (227)
269 1np6_A Molybdopterin-guanine d 89.4 0.28 9.5E-06 35.4 3.3 30 50-80 7-36 (174)
270 4ag6_A VIRB4 ATPase, type IV s 89.4 0.31 1.1E-05 38.3 3.8 26 48-73 34-59 (392)
271 3exa_A TRNA delta(2)-isopenten 89.3 0.19 6.4E-06 40.6 2.5 17 49-65 3-19 (322)
272 3bh0_A DNAB-like replicative h 89.3 0.22 7.6E-06 38.5 2.9 35 41-75 60-94 (315)
273 3u4q_A ATP-dependent helicase/ 89.2 0.43 1.5E-05 43.6 5.1 42 29-76 9-50 (1232)
274 2ze6_A Isopentenyl transferase 89.1 0.14 4.8E-06 38.4 1.6 14 51-64 3-16 (253)
275 1s96_A Guanylate kinase, GMP k 89.1 0.17 5.7E-06 37.6 1.9 20 45-64 12-31 (219)
276 2rhm_A Putative kinase; P-loop 89.1 0.14 4.7E-06 35.4 1.4 17 49-65 5-21 (193)
277 4eun_A Thermoresistant glucoki 89.0 0.21 7.3E-06 35.4 2.4 19 47-65 27-45 (200)
278 1kag_A SKI, shikimate kinase I 88.9 0.23 7.8E-06 33.8 2.4 17 49-65 4-20 (173)
279 1tev_A UMP-CMP kinase; ploop, 88.8 0.15 5.2E-06 35.0 1.5 17 49-65 3-19 (196)
280 1nks_A Adenylate kinase; therm 88.8 0.15 5.2E-06 34.9 1.4 14 51-64 3-16 (194)
281 1nlf_A Regulatory protein REPA 88.8 0.25 8.5E-06 37.0 2.7 26 46-71 27-52 (279)
282 2iut_A DNA translocase FTSK; n 88.8 0.32 1.1E-05 42.0 3.7 28 49-76 214-241 (574)
283 1rz3_A Hypothetical protein rb 88.7 0.38 1.3E-05 34.3 3.6 28 38-65 6-38 (201)
284 3tlx_A Adenylate kinase 2; str 88.7 0.28 9.5E-06 36.4 2.9 16 49-64 29-44 (243)
285 2v9p_A Replication protein E1; 88.7 0.22 7.6E-06 39.3 2.5 28 37-64 114-141 (305)
286 2wwf_A Thymidilate kinase, put 88.6 0.17 5.9E-06 35.5 1.7 18 48-65 9-26 (212)
287 3auy_A DNA double-strand break 88.5 0.24 8.4E-06 39.0 2.7 24 50-75 26-49 (371)
288 1m7g_A Adenylylsulfate kinase; 88.5 0.23 7.9E-06 35.5 2.3 19 46-64 22-40 (211)
289 3c8u_A Fructokinase; YP_612366 88.5 0.12 4E-06 37.1 0.7 27 38-64 7-37 (208)
290 2r2a_A Uncharacterized protein 88.4 0.31 1.1E-05 35.8 3.0 24 50-73 6-29 (199)
291 1aky_A Adenylate kinase; ATP:A 88.4 0.21 7.3E-06 35.8 2.1 16 49-64 4-19 (220)
292 1nn5_A Similar to deoxythymidy 88.4 0.19 6.5E-06 35.3 1.7 18 48-65 8-25 (215)
293 2vp4_A Deoxynucleoside kinase; 88.4 0.17 5.9E-06 37.0 1.6 17 48-64 19-35 (230)
294 2qmh_A HPR kinase/phosphorylas 88.4 0.28 9.5E-06 37.3 2.8 16 49-64 34-49 (205)
295 2nr8_A Kinesin-like protein KI 88.3 0.27 9.2E-06 39.8 2.8 36 32-67 81-122 (358)
296 3qks_A DNA double-strand break 88.2 0.33 1.1E-05 35.2 3.0 26 50-77 24-49 (203)
297 2z0h_A DTMP kinase, thymidylat 88.1 0.2 6.9E-06 34.6 1.7 15 51-65 2-16 (197)
298 1p5z_B DCK, deoxycytidine kina 88.0 0.18 6E-06 37.5 1.5 32 34-65 8-40 (263)
299 1knq_A Gluconate kinase; ALFA/ 88.0 0.22 7.5E-06 34.2 1.8 17 49-65 8-24 (175)
300 1svm_A Large T antigen; AAA+ f 88.0 0.27 9.3E-06 39.8 2.6 25 40-64 160-184 (377)
301 1ex7_A Guanylate kinase; subst 87.9 0.21 7.2E-06 36.6 1.8 15 50-64 2-16 (186)
302 2pez_A Bifunctional 3'-phospho 87.8 0.23 8E-06 34.3 1.9 18 48-65 4-21 (179)
303 2x8a_A Nuclear valosin-contain 87.8 0.31 1.1E-05 37.0 2.7 15 51-65 46-60 (274)
304 1y63_A LMAJ004144AAA protein; 87.7 0.29 9.9E-06 34.3 2.4 18 48-65 9-26 (184)
305 1htw_A HI0065; nucleotide-bind 87.6 0.28 9.4E-06 34.7 2.2 19 46-64 30-48 (158)
306 1e6c_A Shikimate kinase; phosp 87.3 0.25 8.6E-06 33.5 1.8 16 50-65 3-18 (173)
307 2dhr_A FTSH; AAA+ protein, hex 87.3 0.94 3.2E-05 38.0 5.6 35 32-66 36-81 (499)
308 3m6a_A ATP-dependent protease 87.3 0.35 1.2E-05 40.4 3.0 18 49-66 108-125 (543)
309 3uie_A Adenylyl-sulfate kinase 87.3 0.4 1.4E-05 34.0 3.0 19 47-65 23-41 (200)
310 3foz_A TRNA delta(2)-isopenten 87.3 0.32 1.1E-05 39.1 2.7 16 50-65 11-26 (316)
311 3t61_A Gluconokinase; PSI-biol 87.2 0.3 1E-05 34.4 2.2 16 50-65 19-34 (202)
312 2yvu_A Probable adenylyl-sulfa 87.2 0.23 7.9E-06 34.6 1.6 17 49-65 13-29 (186)
313 1qf9_A UMP/CMP kinase, protein 87.1 0.23 7.8E-06 34.0 1.5 16 50-65 7-22 (194)
314 2cdn_A Adenylate kinase; phosp 87.1 0.29 9.9E-06 34.5 2.1 16 50-65 21-36 (201)
315 3v9p_A DTMP kinase, thymidylat 87.1 0.23 7.8E-06 37.4 1.6 19 47-65 23-41 (227)
316 2pbr_A DTMP kinase, thymidylat 87.1 0.27 9.2E-06 33.8 1.8 14 51-64 2-15 (195)
317 2vli_A Antibiotic resistance p 87.0 0.22 7.5E-06 34.2 1.3 17 49-65 5-21 (183)
318 3nwj_A ATSK2; P loop, shikimat 86.8 0.35 1.2E-05 36.8 2.5 30 36-65 32-64 (250)
319 2bdt_A BH3686; alpha-beta prot 86.8 0.22 7.7E-06 34.6 1.3 16 50-65 3-18 (189)
320 3bgw_A DNAB-like replicative h 86.7 0.32 1.1E-05 39.9 2.4 40 41-81 189-228 (444)
321 3tif_A Uncharacterized ABC tra 86.7 0.23 7.9E-06 37.1 1.4 18 47-64 29-46 (235)
322 1ukz_A Uridylate kinase; trans 86.7 0.27 9.2E-06 34.5 1.7 16 50-65 16-31 (203)
323 3fb4_A Adenylate kinase; psych 86.6 0.27 9.3E-06 34.8 1.7 15 51-65 2-16 (216)
324 3tqc_A Pantothenate kinase; bi 86.6 0.76 2.6E-05 36.4 4.5 32 34-65 71-108 (321)
325 1ak2_A Adenylate kinase isoenz 86.5 0.3 1E-05 35.6 1.9 16 49-64 16-31 (233)
326 3hjn_A DTMP kinase, thymidylat 86.5 0.51 1.7E-05 34.2 3.2 29 51-80 2-30 (197)
327 4eaq_A DTMP kinase, thymidylat 86.4 0.26 8.7E-06 36.5 1.5 18 48-65 25-42 (229)
328 3asz_A Uridine kinase; cytidin 86.4 0.28 9.6E-06 34.6 1.7 17 48-64 5-21 (211)
329 2qm8_A GTPase/ATPase; G protei 86.2 0.43 1.5E-05 37.5 2.8 37 38-75 44-80 (337)
330 1ypw_A Transitional endoplasmi 86.2 0.4 1.4E-05 42.1 2.9 17 49-65 238-254 (806)
331 3ld9_A DTMP kinase, thymidylat 86.0 0.69 2.3E-05 34.8 3.8 27 49-76 21-47 (223)
332 3dl0_A Adenylate kinase; phosp 86.0 0.31 1E-05 34.7 1.7 15 51-65 2-16 (216)
333 3vkg_A Dynein heavy chain, cyt 86.0 0.86 2.9E-05 46.3 5.3 41 29-69 886-926 (3245)
334 1ny5_A Transcriptional regulat 85.9 0.87 3E-05 36.2 4.5 33 33-65 144-176 (387)
335 3be4_A Adenylate kinase; malar 85.9 0.34 1.2E-05 34.9 1.9 17 49-65 5-21 (217)
336 2wsm_A Hydrogenase expression/ 85.9 0.96 3.3E-05 31.8 4.3 40 33-73 12-53 (221)
337 2cbz_A Multidrug resistance-as 85.8 0.27 9.3E-06 36.7 1.4 18 47-64 29-46 (237)
338 3a4m_A L-seryl-tRNA(SEC) kinas 85.8 0.27 9.3E-06 36.7 1.4 17 49-65 4-20 (260)
339 2pt5_A Shikimate kinase, SK; a 85.7 0.33 1.1E-05 32.9 1.7 15 51-65 2-16 (168)
340 2bbw_A Adenylate kinase 4, AK4 85.7 0.36 1.2E-05 35.3 2.0 16 49-64 27-42 (246)
341 3crm_A TRNA delta(2)-isopenten 85.7 0.44 1.5E-05 38.1 2.7 16 50-65 6-21 (323)
342 2jeo_A Uridine-cytidine kinase 85.6 0.31 1.1E-05 35.8 1.7 28 38-65 14-41 (245)
343 1zuh_A Shikimate kinase; alpha 85.6 0.33 1.1E-05 33.1 1.7 15 50-64 8-22 (168)
344 1gtv_A TMK, thymidylate kinase 85.4 0.12 4E-06 36.5 -0.7 14 51-64 2-15 (214)
345 3tmk_A Thymidylate kinase; pho 85.3 0.33 1.1E-05 36.3 1.7 18 48-65 4-21 (216)
346 2pze_A Cystic fibrosis transme 85.3 0.27 9.3E-06 36.5 1.2 18 47-64 32-49 (229)
347 1g5t_A COB(I)alamin adenosyltr 85.3 0.73 2.5E-05 34.5 3.5 33 48-81 27-59 (196)
348 3qf7_A RAD50; ABC-ATPase, ATPa 85.3 0.55 1.9E-05 37.2 3.1 23 51-75 25-47 (365)
349 2r8r_A Sensor protein; KDPD, P 85.3 0.7 2.4E-05 35.4 3.5 30 51-81 8-37 (228)
350 1zu4_A FTSY; GTPase, signal re 85.3 0.57 1.9E-05 36.8 3.1 30 51-81 107-136 (320)
351 3b9q_A Chloroplast SRP recepto 85.1 0.51 1.8E-05 36.7 2.7 18 50-67 101-118 (302)
352 4a1f_A DNAB helicase, replicat 85.0 0.44 1.5E-05 38.1 2.4 41 40-81 37-77 (338)
353 1q57_A DNA primase/helicase; d 85.0 0.2 6.9E-06 40.9 0.4 37 45-81 238-274 (503)
354 2xb4_A Adenylate kinase; ATP-b 85.0 0.38 1.3E-05 34.9 1.8 14 51-64 2-15 (223)
355 1vma_A Cell division protein F 84.9 0.65 2.2E-05 36.3 3.3 40 34-73 79-128 (306)
356 2pcj_A ABC transporter, lipopr 84.8 0.28 9.7E-06 36.2 1.1 18 47-64 28-45 (224)
357 2o0j_A Terminase, DNA packagin 84.6 1.3 4.5E-05 36.0 5.1 46 27-76 160-205 (385)
358 1e4v_A Adenylate kinase; trans 84.6 0.35 1.2E-05 34.5 1.5 14 51-64 2-15 (214)
359 3eph_A TRNA isopentenyltransfe 84.6 0.53 1.8E-05 39.1 2.7 16 50-65 3-18 (409)
360 1sgw_A Putative ABC transporte 84.4 0.35 1.2E-05 35.9 1.4 20 46-65 32-51 (214)
361 1g6h_A High-affinity branched- 84.3 0.34 1.2E-05 36.5 1.4 20 46-65 30-49 (257)
362 2ff7_A Alpha-hemolysin translo 84.3 0.34 1.2E-05 36.5 1.4 20 46-65 32-51 (247)
363 2ghi_A Transport protein; mult 84.2 0.36 1.2E-05 36.6 1.4 20 46-65 43-62 (260)
364 1ji0_A ABC transporter; ATP bi 84.0 0.36 1.2E-05 36.0 1.4 19 47-65 30-48 (240)
365 2qt1_A Nicotinamide riboside k 84.0 0.34 1.2E-05 34.3 1.2 16 49-64 21-36 (207)
366 2iyv_A Shikimate kinase, SK; t 84.0 0.49 1.7E-05 32.6 2.0 16 50-65 3-18 (184)
367 1mv5_A LMRA, multidrug resista 83.9 0.28 9.7E-06 36.6 0.7 19 47-65 26-44 (243)
368 1rj9_A FTSY, signal recognitio 83.9 0.84 2.9E-05 35.6 3.5 20 49-68 102-121 (304)
369 3d3q_A TRNA delta(2)-isopenten 83.7 0.66 2.3E-05 37.3 2.9 16 50-65 8-23 (340)
370 3lv8_A DTMP kinase, thymidylat 83.6 0.44 1.5E-05 36.1 1.7 29 48-77 26-54 (236)
371 4hlc_A DTMP kinase, thymidylat 83.6 0.38 1.3E-05 35.3 1.3 16 49-64 2-17 (205)
372 1vht_A Dephospho-COA kinase; s 83.6 0.45 1.5E-05 33.9 1.7 17 49-65 4-20 (218)
373 2d2e_A SUFC protein; ABC-ATPas 83.5 0.38 1.3E-05 36.1 1.4 19 47-65 27-45 (250)
374 2yz2_A Putative ABC transporte 83.5 0.39 1.3E-05 36.4 1.4 19 47-65 31-49 (266)
375 1sq5_A Pantothenate kinase; P- 83.5 1 3.6E-05 34.5 3.9 18 48-65 79-96 (308)
376 1e69_A Chromosome segregation 83.5 0.76 2.6E-05 35.4 3.1 24 50-75 25-48 (322)
377 2z43_A DNA repair and recombin 83.4 0.52 1.8E-05 36.4 2.1 27 47-73 105-131 (324)
378 2zr9_A Protein RECA, recombina 83.3 0.71 2.4E-05 36.6 2.9 29 46-74 58-86 (349)
379 2zu0_C Probable ATP-dependent 83.2 0.41 1.4E-05 36.4 1.4 20 46-65 43-62 (267)
380 1b0u_A Histidine permease; ABC 83.1 0.42 1.4E-05 36.3 1.4 18 47-64 30-47 (262)
381 1cke_A CK, MSSA, protein (cyti 83.1 0.63 2.1E-05 33.0 2.3 16 49-64 5-20 (227)
382 2ocp_A DGK, deoxyguanosine kin 83.0 0.39 1.3E-05 35.0 1.2 16 49-64 2-17 (241)
383 1ye8_A Protein THEP1, hypothet 83.0 0.6 2.1E-05 33.3 2.2 15 51-65 2-16 (178)
384 1via_A Shikimate kinase; struc 83.0 0.52 1.8E-05 32.4 1.8 14 51-64 6-19 (175)
385 2qi9_C Vitamin B12 import ATP- 82.9 0.42 1.4E-05 36.2 1.3 19 47-65 24-42 (249)
386 1vpl_A ABC transporter, ATP-bi 82.9 0.43 1.5E-05 36.3 1.4 20 46-65 38-57 (256)
387 2ixe_A Antigen peptide transpo 82.8 0.44 1.5E-05 36.4 1.4 19 46-64 42-60 (271)
388 4g1u_C Hemin import ATP-bindin 82.8 0.42 1.4E-05 36.5 1.3 19 47-65 35-53 (266)
389 2i3b_A HCR-ntpase, human cance 82.7 0.69 2.3E-05 33.5 2.4 17 49-65 1-17 (189)
390 2nq2_C Hypothetical ABC transp 82.7 0.42 1.4E-05 36.1 1.3 18 47-64 29-46 (253)
391 1u94_A RECA protein, recombina 82.4 0.87 3E-05 36.3 3.1 29 46-74 60-88 (356)
392 1w1w_A Structural maintenance 82.3 0.84 2.9E-05 36.4 3.0 27 48-76 25-51 (430)
393 3dm5_A SRP54, signal recogniti 82.3 1.7 5.7E-05 36.2 4.9 31 50-81 101-131 (443)
394 2olj_A Amino acid ABC transpor 82.3 0.47 1.6E-05 36.3 1.4 19 47-65 48-66 (263)
395 3p32_A Probable GTPase RV1496/ 82.2 2.4 8.1E-05 33.1 5.5 18 50-67 80-97 (355)
396 2www_A Methylmalonic aciduria 82.2 2 6.7E-05 33.8 5.0 25 49-74 74-98 (349)
397 1z6t_A APAF-1, apoptotic prote 82.0 0.96 3.3E-05 36.9 3.3 34 29-65 126-163 (591)
398 2ihy_A ABC transporter, ATP-bi 81.9 0.47 1.6E-05 36.5 1.3 19 46-64 44-62 (279)
399 2if2_A Dephospho-COA kinase; a 81.8 0.65 2.2E-05 32.5 1.9 15 51-65 3-17 (204)
400 3kl4_A SRP54, signal recogniti 81.7 0.86 2.9E-05 37.7 2.9 30 51-81 99-128 (433)
401 2og2_A Putative signal recogni 81.4 0.85 2.9E-05 36.7 2.7 18 50-67 158-175 (359)
402 3e70_C DPA, signal recognition 81.3 1.1 3.6E-05 35.4 3.2 18 49-66 129-146 (328)
403 3gfo_A Cobalt import ATP-bindi 81.3 0.57 2E-05 36.1 1.6 20 46-65 31-50 (275)
404 1v5w_A DMC1, meiotic recombina 81.0 0.78 2.7E-05 35.9 2.3 25 48-72 121-145 (343)
405 3qkt_A DNA double-strand break 80.8 1 3.5E-05 35.0 2.9 24 50-75 24-47 (339)
406 3dzd_A Transcriptional regulat 80.6 2.2 7.4E-05 33.8 4.8 35 31-65 134-168 (368)
407 2i1q_A DNA repair and recombin 80.6 0.73 2.5E-05 35.2 2.0 25 48-72 97-121 (322)
408 2xxa_A Signal recognition part 80.4 1 3.6E-05 36.9 3.0 31 51-81 102-132 (433)
409 4e22_A Cytidylate kinase; P-lo 80.4 0.87 3E-05 33.8 2.3 18 48-65 26-43 (252)
410 3cf2_A TER ATPase, transitiona 80.4 0.72 2.5E-05 41.1 2.1 16 50-65 239-254 (806)
411 2bbs_A Cystic fibrosis transme 80.4 0.51 1.8E-05 36.6 1.1 18 48-65 63-80 (290)
412 1odf_A YGR205W, hypothetical 3 80.2 1.4 4.6E-05 34.1 3.4 16 50-65 32-47 (290)
413 1tf7_A KAIC; homohexamer, hexa 80.1 0.89 3E-05 37.5 2.5 31 38-68 27-58 (525)
414 3hr8_A Protein RECA; alpha and 80.0 0.86 2.9E-05 36.6 2.3 27 48-74 60-86 (356)
415 2p5t_B PEZT; postsegregational 80.0 1.6 5.5E-05 32.2 3.7 16 50-65 33-48 (253)
416 1jjv_A Dephospho-COA kinase; P 79.9 0.85 2.9E-05 32.0 2.0 15 51-65 4-18 (206)
417 1ls1_A Signal recognition part 79.9 1.3 4.4E-05 34.1 3.2 25 50-74 99-123 (295)
418 2p67_A LAO/AO transport system 79.5 1.1 3.7E-05 35.0 2.6 18 48-65 55-72 (341)
419 1ltq_A Polynucleotide kinase; 79.3 0.76 2.6E-05 34.2 1.7 15 51-65 4-18 (301)
420 1uf9_A TT1252 protein; P-loop, 79.0 0.7 2.4E-05 32.0 1.3 16 50-65 9-24 (203)
421 1xp8_A RECA protein, recombina 78.6 1.3 4.3E-05 35.6 2.9 29 46-74 71-99 (366)
422 3cf2_A TER ATPase, transitiona 78.3 1.1 3.7E-05 40.0 2.6 16 50-65 512-527 (806)
423 1ypw_A Transitional endoplasmi 78.1 0.67 2.3E-05 40.7 1.2 17 49-65 511-527 (806)
424 2j9r_A Thymidine kinase; TK1, 78.0 1.7 5.8E-05 32.9 3.3 32 49-81 28-59 (214)
425 2yhs_A FTSY, cell division pro 78.0 1.2 4.2E-05 37.8 2.7 19 50-68 294-312 (503)
426 1j8m_F SRP54, signal recogniti 77.8 1.6 5.5E-05 33.8 3.2 30 51-81 100-129 (297)
427 1ko7_A HPR kinase/phosphatase; 77.8 1.8 6.2E-05 34.4 3.5 30 36-65 115-160 (314)
428 2pjz_A Hypothetical protein ST 77.2 0.79 2.7E-05 35.0 1.2 19 46-65 28-46 (263)
429 2hf9_A Probable hydrogenase ni 76.7 3.6 0.00012 28.8 4.5 23 50-73 39-61 (226)
430 2v3c_C SRP54, signal recogniti 76.6 2.2 7.4E-05 35.0 3.7 30 51-81 101-130 (432)
431 1pui_A ENGB, probable GTP-bind 76.2 0.69 2.4E-05 32.1 0.6 17 48-64 25-41 (210)
432 4a82_A Cystic fibrosis transme 76.1 0.87 3E-05 38.1 1.3 19 46-64 364-382 (578)
433 2vhj_A Ntpase P4, P4; non- hyd 76.0 1.6 5.5E-05 35.2 2.8 20 48-67 122-141 (331)
434 1pzn_A RAD51, DNA repair and r 75.9 1.1 3.8E-05 35.3 1.8 25 47-71 129-153 (349)
435 1tq4_A IIGP1, interferon-induc 75.9 2.4 8.2E-05 34.7 3.8 15 51-65 71-85 (413)
436 3aez_A Pantothenate kinase; tr 75.9 0.94 3.2E-05 35.3 1.4 18 48-65 89-106 (312)
437 3umf_A Adenylate kinase; rossm 75.9 0.93 3.2E-05 33.9 1.3 16 49-64 29-44 (217)
438 1z47_A CYSA, putative ABC-tran 75.8 1.1 3.7E-05 36.1 1.7 20 46-65 38-57 (355)
439 2yyz_A Sugar ABC transporter, 75.5 1.1 3.9E-05 35.9 1.8 19 47-65 27-45 (359)
440 3b5x_A Lipid A export ATP-bind 75.5 0.97 3.3E-05 37.8 1.4 27 38-64 358-384 (582)
441 3lda_A DNA repair protein RAD5 75.3 1.3 4.5E-05 36.0 2.1 21 48-68 177-197 (400)
442 2it1_A 362AA long hypothetical 75.3 1.1 3.9E-05 36.0 1.7 19 47-65 27-45 (362)
443 3nh6_A ATP-binding cassette SU 75.3 0.7 2.4E-05 36.3 0.5 20 46-65 77-96 (306)
444 1g29_1 MALK, maltose transport 75.1 1.1 3.9E-05 36.0 1.7 19 47-65 27-45 (372)
445 2onk_A Molybdate/tungstate ABC 74.8 1 3.5E-05 33.8 1.2 16 50-65 25-40 (240)
446 1v43_A Sugar-binding transport 74.6 1.2 4.2E-05 35.9 1.7 19 47-65 35-53 (372)
447 3b60_A Lipid A export ATP-bind 74.5 0.93 3.2E-05 37.9 1.0 20 46-65 366-385 (582)
448 3gd7_A Fusion complex of cysti 74.3 1.5 5.1E-05 35.6 2.2 20 46-65 44-63 (390)
449 3qf4_B Uncharacterized ABC tra 74.2 1.1 3.7E-05 37.8 1.4 20 46-65 378-397 (598)
450 3zq6_A Putative arsenical pump 74.2 2.1 7.1E-05 33.0 2.9 31 50-81 15-45 (324)
451 3sr0_A Adenylate kinase; phosp 73.8 1.4 4.7E-05 32.4 1.7 14 51-64 2-15 (206)
452 2yl4_A ATP-binding cassette SU 73.7 1.1 3.7E-05 37.6 1.3 20 46-65 367-386 (595)
453 2ffh_A Protein (FFH); SRP54, s 73.5 2.2 7.4E-05 35.1 3.0 30 51-81 100-129 (425)
454 2npi_A Protein CLP1; CLP1-PCF1 73.4 1.5 5.2E-05 36.2 2.0 23 42-64 131-153 (460)
455 3rlf_A Maltose/maltodextrin im 73.2 1.8 6.1E-05 35.2 2.4 19 47-65 27-45 (381)
456 4aby_A DNA repair protein RECN 73.2 0.52 1.8E-05 36.9 -0.7 23 51-75 62-84 (415)
457 3ake_A Cytidylate kinase; CMP 73.1 1.5 5.2E-05 30.3 1.7 15 51-65 4-18 (208)
458 3fvq_A Fe(3+) IONS import ATP- 73.0 1.7 5.7E-05 35.1 2.2 19 47-65 28-46 (359)
459 1w4r_A Thymidine kinase; type 72.6 2.5 8.5E-05 31.5 2.9 28 49-76 20-47 (195)
460 1h65_A Chloroplast outer envel 72.6 3 0.0001 30.9 3.4 34 31-64 18-54 (270)
461 2ga8_A Hypothetical 39.9 kDa p 72.5 3.7 0.00013 33.4 4.1 21 45-65 18-40 (359)
462 1ihu_A Arsenical pump-driving 72.3 2.5 8.5E-05 35.1 3.1 32 49-81 8-39 (589)
463 3qf4_A ABC transporter, ATP-bi 72.2 1.2 4.2E-05 37.4 1.2 20 46-65 366-385 (587)
464 2yv5_A YJEQ protein; hydrolase 72.1 3.1 0.00011 31.9 3.4 24 40-64 157-180 (302)
465 2f6r_A COA synthase, bifunctio 71.7 1.6 5.6E-05 33.0 1.8 15 51-65 77-91 (281)
466 2h92_A Cytidylate kinase; ross 71.7 2 6.7E-05 30.3 2.1 17 49-65 3-19 (219)
467 2zpa_A Uncharacterized protein 71.7 1.8 6.3E-05 37.9 2.3 42 31-75 176-217 (671)
468 3d31_A Sulfate/molybdate ABC t 71.7 0.97 3.3E-05 36.1 0.5 19 47-65 24-42 (348)
469 1q3t_A Cytidylate kinase; nucl 71.6 2.3 7.7E-05 30.8 2.4 17 49-65 16-32 (236)
470 2dyk_A GTP-binding protein; GT 71.4 1.7 5.8E-05 28.3 1.6 14 51-64 3-16 (161)
471 2j37_W Signal recognition part 71.3 2.7 9.3E-05 35.3 3.2 29 51-80 103-131 (504)
472 1uj2_A Uridine-cytidine kinase 71.3 1.7 5.8E-05 31.9 1.7 15 51-65 24-38 (252)
473 3ug7_A Arsenical pump-driving 71.2 2.6 9E-05 33.0 2.9 31 50-81 27-57 (349)
474 3cmu_A Protein RECA, recombina 71.1 2.2 7.6E-05 41.8 2.9 27 46-72 1424-1450(2050)
475 4dzz_A Plasmid partitioning pr 71.1 2.5 8.6E-05 29.1 2.5 29 52-81 5-33 (206)
476 3bfv_A CAPA1, CAPB2, membrane 70.4 5.7 0.00019 29.9 4.6 31 50-81 83-114 (271)
477 1u0l_A Probable GTPase ENGC; p 70.3 4 0.00014 31.1 3.7 23 41-64 162-184 (301)
478 2oze_A ORF delta'; para, walke 70.1 6.2 0.00021 29.2 4.6 43 38-81 22-68 (298)
479 3ea0_A ATPase, para family; al 70.1 2.7 9.3E-05 29.9 2.6 31 51-81 7-37 (245)
480 1a7j_A Phosphoribulokinase; tr 70.0 1.6 5.5E-05 33.5 1.4 16 50-65 6-21 (290)
481 2ce2_X GTPase HRAS; signaling 69.8 1.7 5.9E-05 28.0 1.3 14 51-64 5-18 (166)
482 2qag_B Septin-6, protein NEDD5 69.8 2 6.9E-05 35.5 2.0 26 39-64 30-57 (427)
483 1nrj_B SR-beta, signal recogni 69.6 1.9 6.4E-05 30.1 1.6 15 50-64 13-27 (218)
484 1z2a_A RAS-related protein RAB 69.6 2 6.7E-05 28.1 1.6 14 51-64 7-20 (168)
485 3io3_A DEHA2D07832P; chaperone 69.5 3.3 0.00011 32.8 3.2 32 50-81 19-51 (348)
486 1ky3_A GTP-binding protein YPT 69.4 1.9 6.6E-05 28.5 1.6 15 50-64 9-23 (182)
487 2ged_A SR-beta, signal recogni 69.3 2 6.7E-05 29.2 1.6 15 50-64 49-63 (193)
488 2o5v_A DNA replication and rep 68.5 1.6 5.6E-05 34.9 1.2 22 51-74 28-49 (359)
489 2f9l_A RAB11B, member RAS onco 68.5 2.1 7E-05 29.7 1.6 14 51-64 7-20 (199)
490 3cio_A ETK, tyrosine-protein k 68.5 7.9 0.00027 29.5 5.0 31 50-81 105-136 (299)
491 1z0j_A RAB-22, RAS-related pro 68.5 2.1 7.2E-05 28.0 1.6 14 51-64 8-21 (170)
492 3r20_A Cytidylate kinase; stru 68.1 2.7 9.4E-05 31.7 2.3 17 49-65 9-25 (233)
493 1ek0_A Protein (GTP-binding pr 67.9 2.2 7.6E-05 27.8 1.6 14 51-64 5-18 (170)
494 2grj_A Dephospho-COA kinase; T 67.6 2.6 9E-05 30.4 2.0 15 51-65 14-28 (192)
495 1oxx_K GLCV, glucose, ABC tran 67.6 1 3.5E-05 36.0 -0.2 19 47-65 29-47 (353)
496 1kao_A RAP2A; GTP-binding prot 67.6 2.3 7.7E-05 27.6 1.6 14 51-64 5-18 (167)
497 2a5y_B CED-4; apoptosis; HET: 67.5 2.3 7.8E-05 35.0 1.9 16 50-65 153-168 (549)
498 1nij_A Hypothetical protein YJ 67.5 2.1 7.2E-05 33.0 1.6 16 50-65 5-20 (318)
499 2woj_A ATPase GET3; tail-ancho 67.4 3.7 0.00013 32.4 3.0 32 50-81 19-51 (354)
500 3e2i_A Thymidine kinase; Zn-bi 67.3 3.9 0.00013 31.2 3.0 34 47-81 26-59 (219)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.39 E-value=2.4e-13 Score=116.50 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
|+||++|.+||..|++++.++++++++||||||||++||+|++.++...+.++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kv 54 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKV 54 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeE
Confidence 78999999999999999999999999999999999999999999987765554
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.22 E-value=1.1e-11 Score=103.72 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 28 pf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
.|++||+|.+||+.|++++.++++++++||||||||++||+|++.
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~ 45 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE 45 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh
Confidence 378999999999999999999999999999999999999999987
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.17 E-value=2e-11 Score=102.23 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
.+|++||+|.++++.|.+++.++++++++||||||||++||+|++.+
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~ 50 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL 50 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999999998764
No 4
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.91 E-value=1.6e-09 Score=80.49 Aligned_cols=47 Identities=19% Similarity=0.080 Sum_probs=40.8
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. |++.|.+.+..+ .+++.+++.||||+|||++|++|++..+..
T Consensus 46 ~~g~~~~~~~Q~~~i~~~----~~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 46 RQNFTEPTAIQAQGWPVA----LSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp TTTCCSCCHHHHHHHHHH----HHTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 35777 999999988765 367899999999999999999999988864
No 5
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.90 E-value=1.7e-09 Score=79.16 Aligned_cols=47 Identities=23% Similarity=0.089 Sum_probs=39.5
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. |++.|.+.++.+ .+++.+++.||||+|||++|++|++..+..
T Consensus 37 ~~g~~~~~~~Q~~~i~~~----~~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 37 RVGILKPTPIQSQAWPII----LQGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp HHTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 35665 999999988765 478899999999999999999999987754
No 6
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.89 E-value=2.5e-09 Score=76.65 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=40.0
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. +|+.|.+.++.+ .+++.+++.+|||+|||++|++|++..+..
T Consensus 20 ~~g~~~~~~~Q~~~i~~~----~~~~~~lv~apTGsGKT~~~~~~~~~~~~~ 67 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp TTTCCSCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCT
T ss_pred HCCCCCCCHHHHHHHHHH----ccCCCEEEECCCCCchHHHHHHHHHHHhcc
Confidence 35676 999999988765 467899999999999999999999987754
No 7
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.86 E-value=3.6e-09 Score=78.24 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=40.3
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. |++.|.+.+..+ .+++.+++.||||+|||++|++|++..+..
T Consensus 46 ~~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 46 DAGFQMPTPIQMQAIPVM----LHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 34677 999999988765 467889999999999999999999988864
No 8
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.84 E-value=5.1e-09 Score=77.92 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=41.0
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.++|. |++.|.+.++.+ .+++.+++.||||+|||++|++|++..+...
T Consensus 40 ~~g~~~~~~~Q~~~i~~i----~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 40 LASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp TTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 45676 999999988865 4678899999999999999999999888653
No 9
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.83 E-value=3.8e-09 Score=76.76 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=40.5
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.++|. +|+.|.+.+..+ .+++.+++.+|||+|||++|++|++.++...
T Consensus 31 ~~g~~~~~~~Q~~~i~~~----~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp HHTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred HCCCCCCcHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 35676 999999988765 4678899999999999999999999887544
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.82 E-value=6.9e-09 Score=76.32 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
+.|. +++.|.+.+..+ .+++.+++.+|||+|||++|++|++..+..
T Consensus 43 ~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp TTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 4666 999999988764 467899999999999999999999988754
No 11
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.81 E-value=6.2e-09 Score=74.46 Aligned_cols=46 Identities=24% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. |++.|.+.++.+ .+++.+++.+|||+|||++|+.|++..+..
T Consensus 19 ~~~~~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~l~~ 65 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLA----LEGKDLIGQARTGTGKTLAFALPIAERLAP 65 (207)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred cCCCCCCHHHHHHHHHH----cCCCCEEEECCCCChHHHHHHHHHHHHHhh
Confidence 5665 999999988765 467889999999999999999999988753
No 12
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.80 E-value=8.3e-09 Score=77.77 Aligned_cols=49 Identities=18% Similarity=0.090 Sum_probs=41.7
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.++|. +++.|.+.+..+ .+++.+++.||||+|||++|++|++..+...+
T Consensus 60 ~~g~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~ 109 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLA----LQGRDIIGLAETGSGKTGAFALPILNALLETP 109 (249)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC
T ss_pred HcCCCCCCHHHHHHHHHH----hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC
Confidence 46776 999999988765 46789999999999999999999998876653
No 13
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.79 E-value=7.5e-09 Score=76.36 Aligned_cols=47 Identities=17% Similarity=0.031 Sum_probs=40.4
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. +++.|.+.++.+ .+++.+++.+|||+|||++|++|++..+..
T Consensus 41 ~~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVL 88 (230)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36777 999999988864 467899999999999999999999888754
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.79 E-value=8.1e-09 Score=78.35 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. +++.|.+++..+. +++.+++.||||+|||++|++|++..+..
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 4566 9999999888754 46789999999999999999999988865
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.78 E-value=8.1e-09 Score=75.03 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=40.6
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.++|. |++.|.+.+..+. ++..+++.+|||+|||++|++|++..+...
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~ 79 (220)
T 1t6n_A 31 DCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPV 79 (220)
T ss_dssp HTTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCC
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhcc
Confidence 36777 9999999887653 567899999999999999999999887553
No 16
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.77 E-value=8.8e-09 Score=80.28 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
++|. |++.|.+.+..+ .+++.+++.||||+|||++|++|++..+...+
T Consensus 33 ~~~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 4665 999999988754 57889999999999999999999998876543
No 17
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.77 E-value=4.3e-09 Score=76.80 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=39.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
++|. +++.|.+.++.+. +++.+++.+|||+|||++|++|++..+...
T Consensus 22 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~ 69 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPE 69 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhC
Confidence 5555 9999999887653 568899999999999999999999887643
No 18
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.73 E-value=1.6e-08 Score=81.64 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
++|. |+|.|.+.+..+ .+++.+++.||||+|||++|++|++..+...
T Consensus 74 ~g~~~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 5677 999999988865 5788999999999999999999999888664
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.72 E-value=7.3e-09 Score=81.80 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=40.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.|+|.|+|.|.+.++.+ .+++.+++.||||+|||++|+.+++..+..
T Consensus 17 ~~~~~~~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~l~~~~~~~~~ 63 (414)
T 3oiy_A 17 KFGKDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLARK 63 (414)
T ss_dssp HHSSCCCHHHHHHHHHH----TTTCCEECCSCSSSSHHHHHHHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 46889999999988865 467899999999999999999998877633
No 20
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.72 E-value=6.7e-09 Score=77.12 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=40.4
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. +++.|.+.+..+ .++..+++.||||+|||++|++|++..+..
T Consensus 47 ~~g~~~~~~~Q~~ai~~i----~~~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 47 AYGFEKPSAIQQRAIIPC----IKGYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp HHTCCSCCHHHHHHHHHH----HTTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred HCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 35777 999999988765 467889999999999999999999988754
No 21
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=79.08 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=40.2
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHHHHHHHHHHHhhhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSLICGILKWYSDHKI 79 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~L~~al~~l~~~~~ 79 (115)
+.|. |++.|.+.+..+ .++ +++|+.||||||||++|++|++..+...+.
T Consensus 110 ~g~~~pt~iQ~~ai~~i----l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~ 161 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLM----LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161 (300)
T ss_dssp TTCCSCCHHHHHHHHHH----TSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC
T ss_pred cCCCCCCHHHHHHHHHH----HcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC
Confidence 4566 899999988765 344 899999999999999999999988765433
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.70 E-value=2e-08 Score=80.42 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 28 pf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
||.||+.|.+.++.+ .+++.+|+.+|||+|||++|++|++..+...
T Consensus 2 ~~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~ 47 (555)
T 3tbk_A 2 PLKPRNYQLELALPA----KKGKNTIICAPTGCGKTFVSLLICEHHLKKF 47 (555)
T ss_dssp CCCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHH----hCCCCEEEEeCCCChHHHHHHHHHHHHHHhc
Confidence 688999999988865 3678999999999999999999999888764
No 23
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.69 E-value=1.3e-08 Score=83.52 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=42.5
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHh-cCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLD-NSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~-~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.++|. ++|.|.+++..+. . +++.+|+.||||+|||++|++|++..+...+
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l---~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~ 140 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPIL---SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 140 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHH---SSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHh---cCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc
Confidence 36788 9999999887653 3 4678999999999999999999999987754
No 24
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=71.82 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=40.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.+.+.+|+.|.++++.+. +++.+++.+|||+|||++++.+++..+...
T Consensus 29 ~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 76 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKK 76 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhc
Confidence 445779999999888653 568899999999999999999998877654
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.69 E-value=1.2e-08 Score=78.92 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=40.9
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.++|. |++.|.+.+..+... .++.+++.||||+|||++|++|++..+....
T Consensus 42 ~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~ 93 (412)
T 3fht_A 42 AMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 93 (412)
T ss_dssp HTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS
T ss_pred HcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC
Confidence 35676 999999988776421 2489999999999999999999998876543
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.68 E-value=1.4e-08 Score=84.54 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=42.6
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHh-cCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLD-NSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~-~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.++|. ++|.|.+.+..+. . .++.+|+.||||+|||++|++|++..+....
T Consensus 38 ~~g~~~~~~~Q~~~i~~il---~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~ 89 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPIL---SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 89 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHH---CSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHH---ccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc
Confidence 57888 9999999887653 3 4678999999999999999999999887653
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.67 E-value=3.1e-08 Score=74.54 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=36.9
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
.++|. +||.|.+.+..+ .+++.+++.+|||+|||++|+.|++.
T Consensus 11 ~~g~~~l~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLM----LQGKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHH----hcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 36776 999999988765 46789999999999999999999775
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.65 E-value=2e-08 Score=76.89 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=38.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. |++.|.+.++.+... .++.+++.||||+|||++|+.|++..+..
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~ 71 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNP 71 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhcc
Confidence 4565 999999988765321 13889999999999999999999887754
No 29
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.65 E-value=2.2e-08 Score=78.20 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=39.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
++|. |++.|.+.+..+ .+++.+++.+|||+|||++|++|++..+.
T Consensus 55 ~g~~~~~~~Q~~ai~~i----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~ 100 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLD 100 (410)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCCchHHHHHHHHHHHh
Confidence 6777 999999988865 46788999999999999999999998775
No 30
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.64 E-value=2.8e-08 Score=76.61 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. +||.|.+.++.+ .+++.+++.+|||+|||++|++|++..+..
T Consensus 26 ~g~~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~ 72 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEP 72 (391)
T ss_dssp HSCCSCCHHHHHHHHHH----TTTCCEEEECSSCSSHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHhhcc
Confidence 5677 999999988765 457889999999999999999999987654
No 31
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.63 E-value=3.6e-08 Score=76.60 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=39.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. +|+.|.+.++.+. +++.+++.+|||+|||++|++|++..+..
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~ 85 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKP 85 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhh
Confidence 4677 9999999888754 56789999999999999999999987754
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.61 E-value=3.9e-08 Score=76.33 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=40.1
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|. +++.|.+.+..+ .+++.+++.||||+|||++|++|++..+..
T Consensus 57 ~~~~~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~ 104 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIEL 104 (414)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEECCCSCSSSHHHHHHHHHHHCCT
T ss_pred HcCCCCCCHHHHHHhHHH----hCCCCEEEECCCCCcccHHHHHHHHHHHhh
Confidence 36776 999999988765 457889999999999999999999988754
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.60 E-value=5e-08 Score=78.50 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.+|.|||.|.+.++.+ .++..+|+.+|||+|||++|+.|++..+...
T Consensus 4 ~~~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~ 50 (556)
T 4a2p_A 4 ETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNM 50 (556)
T ss_dssp ----CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHH----HcCCCEEEEcCCCChHHHHHHHHHHHHHHhC
Confidence 4688999999988765 3578899999999999999999999888764
No 34
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.59 E-value=2.5e-08 Score=76.75 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=39.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
++|. +|+.|.+.+..+. +++.+++.+|||+|||++|++|++..+...
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~ 86 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTS 86 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhcc
Confidence 5665 9999999887753 567899999999999999999999887653
No 35
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.58 E-value=5.7e-08 Score=73.67 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=39.2
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. +|+.|.+.+..+ +..+..+++.+|||+|||++++.|++.++..
T Consensus 24 ~g~~~~~~~Q~~~i~~~---~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 71 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLF---LNDEYNIVAQARTGSGKTASFAIPLIELVNE 71 (367)
T ss_dssp HTCCSCCHHHHHHHHHH---HHTCSEEEEECCSSSSHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHH---hCCCCCEEEECCCCChHHHHHHHHHHHHhcc
Confidence 4565 999999987765 4445799999999999999999999988765
No 36
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.56 E-value=4.3e-08 Score=83.47 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=38.4
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 25 FPFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 25 ~~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
-.|+|. +||.|.+.++.+ .+++.+++.+|||+|||++|++|++.
T Consensus 38 ~~fg~~~~rp~Q~~~i~~i----l~g~d~lv~~pTGsGKTl~~~lpal~ 82 (591)
T 2v1x_A 38 NVFKLEKFRPLQLETINVT----MAGKEVFLVMPTGGGKSLCYQLPALC 82 (591)
T ss_dssp HTSCCCSCCTTHHHHHHHH----HTTCCEEEECCTTSCTTHHHHHHHHT
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCChHHHHHHHHHHH
Confidence 358998 999999988875 45788999999999999999999874
No 37
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.55 E-value=2.7e-08 Score=80.28 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=39.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
++|. |++.|.+.+..+.. ..+..+|+.||||+|||++|++|++..+...+
T Consensus 110 ~g~~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~ 160 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS
T ss_pred cCCCCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC
Confidence 4566 88999998877632 12488999999999999999999998776544
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=79.64 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 28 pf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
+|.+|+.|.+.++.+. +++.+|+.+|||+|||++|+.|++..+....
T Consensus 5 ~~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~ 51 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKK 51 (699)
T ss_dssp --CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc
Confidence 5789999999888753 4788999999999999999999998887653
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.46 E-value=1.9e-07 Score=82.44 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=46.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.+||.+++.|.+.++.|.+.+.++ .++++.||||+|||++|+.|++..+...
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g 417 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG 417 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999888776 4899999999999999999999887543
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.45 E-value=2e-07 Score=78.12 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=40.4
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 25 FPFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 25 ~~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
-.|+|. +|+.|.+.++.+ .+++.+|+.+|||+|||++|+.|++..+...
T Consensus 7 ~~~g~~~lr~~Q~~~i~~~----l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~ 56 (696)
T 2ykg_A 7 NLYSPFKPRNYQLELALPA----MKGKNTIICAPTGCGKTFVSLLICEHHLKKF 56 (696)
T ss_dssp CTTC--CCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred cccCCCCccHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHHHHHHhC
Confidence 356766 999999988765 4578999999999999999999999888664
No 41
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.45 E-value=7e-08 Score=80.51 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=38.0
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 25 FPFPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 25 ~~fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
-.|+|. +|+.|.+.++.+ .+++.+++.||||+|||++|++|++.
T Consensus 19 ~~~g~~~~r~~Q~~~i~~i----l~g~d~lv~apTGsGKTl~~~lp~l~ 63 (523)
T 1oyw_A 19 ETFGYQQFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPALL 63 (523)
T ss_dssp HTTCCSSCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 358887 999999988865 46789999999999999999999874
No 42
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.38 E-value=4.7e-07 Score=82.47 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=46.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCC--cEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 25 FPFPFDAYDIQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 25 ~~fpf~~r~~Q~e~m~~I~~~l~~~~--~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
..|||+++|.|.+.++.+.+.+.+++ .+++++|||+|||++++.+++..+...
T Consensus 598 ~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g 652 (1151)
T 2eyq_A 598 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 652 (1151)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 36899999999999999998888776 899999999999999999988766543
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.34 E-value=3.8e-07 Score=73.89 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 28 pf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
+|.+|+.|.+.++.+.+ +..+++.+|||+|||++++.++...+...+
T Consensus 111 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~ 157 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE 157 (510)
T ss_dssp EECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 66899999998887653 478999999999999999999888776443
No 44
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.34 E-value=6e-07 Score=80.79 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=42.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 23 SEFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 23 ~~~~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
....|||++++.|.+.+..+ .+++.+++.||||+|||++|+.++...+..
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~ 81 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN 81 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc
Confidence 44578999999999987754 578899999999999999999997776644
No 45
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.34 E-value=5.3e-07 Score=82.03 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=44.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 23 SEFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 23 ~~~~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
....|||.+++.|.+.+..| .++..+|+.||||+|||++|++|++..+...+
T Consensus 177 ~~~~~~f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~ 228 (1108)
T 3l9o_A 177 EARTYPFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ 228 (1108)
T ss_dssp CSSCCSSCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhcCC
Confidence 45678999999999988764 67899999999999999999999988875443
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.33 E-value=7.1e-07 Score=71.66 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=37.4
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 24 ~~~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
...+++.+|+.|.+.++.+ .++..+++.+|||+|||++++.++...
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHH----HhcCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3457788999999988764 345679999999999999999986643
No 47
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.32 E-value=6.4e-07 Score=77.56 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
+.+|+.|.+.+..+ .++..+|+.+|||+|||++|++|++..+...
T Consensus 247 ~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~ 291 (797)
T 4a2q_A 247 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNM 291 (797)
T ss_dssp -CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhc
Confidence 45999999988765 4678999999999999999999999888764
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.31 E-value=5.3e-07 Score=81.36 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=43.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 24 ~~~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
...|||++++.|.+.+..+ .++..+++.||||+|||++|+++++..+...
T Consensus 80 ~~~~~f~L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~g 129 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKNK 129 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhccC
Confidence 5678999999999988864 5688999999999999999999988777543
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.28 E-value=3.8e-07 Score=70.46 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
|.+||.|.+.+..+. ++ .+|+.+|||+|||++++.+++..+...+
T Consensus 8 ~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~ 52 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLTKYG 52 (494)
T ss_dssp HCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHh----hC-CEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 779999999887653 34 8999999999999999999888876333
No 50
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.27 E-value=1.6e-06 Score=65.25 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=35.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 24 EFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 24 ~~~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
.+.+++.+++.|.+.+..+ .++..+++.+|||+|||+.++.++..
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHH----HhCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 4456678999999987754 34566999999999999998887654
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.27 E-value=1.4e-06 Score=72.41 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-CcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNS-KFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~-~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
+.+|+.|.+.++.+...+.++ ..+++.+|||+|||++++..+...+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHh
Confidence 369999999999999888876 56899999999999997766555444
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.27 E-value=6.2e-07 Score=76.25 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=41.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
++|. +++.|.+.+..+ +.+++++|+.||||+|||+++..+++..+...+.+
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~ 77 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGK 77 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSE
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCe
Confidence 6785 999999987752 45689999999999999999999998877644433
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.23 E-value=1.5e-06 Score=65.95 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
+.+|+.|.+.+..+.+ +..+++.+|||+|||++++.++...+...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~ 156 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY 156 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC
Confidence 6799999998876543 35678899999999999998887776543
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.21 E-value=6.7e-07 Score=76.35 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=41.7
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
++|. +++.|.+.+..+ +.+++++|+.||||+|||+++..+++..+...+.+
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~ 70 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGK 70 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSE
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCE
Confidence 6785 999999987752 45689999999999999999999999877644433
No 55
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.19 E-value=2e-07 Score=76.81 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=37.4
Q ss_pred CCC-CCHHHHHHHHHHHHHHhc-CCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 28 PFD-AYDIQSNFMKNLYYTLDN-SKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 28 pf~-~r~~Q~e~m~~I~~~l~~-~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
+|. |++.|.+.+..+. .. ++.+|+.||||+|||++|+.+++..+...
T Consensus 138 g~~~p~~~Q~~ai~~i~---~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~ 186 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLL---SNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS 186 (508)
T ss_dssp -CEECCCTTSSSHHHHH---CSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT
T ss_pred cccCcHHHHHHHHHHHH---cCCCCCEEEECCCCccHHHHHHHHHHHHHHhC
Confidence 454 8899999777653 22 48999999999999999999999887554
No 56
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.17 E-value=1.5e-06 Score=79.04 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=39.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.++|.|++.|.+.+..+ .+++.+|+.||||+|||++++.+++..+..
T Consensus 74 ~~gf~pt~iQ~~ai~~i----l~g~dvlv~ApTGSGKTl~~l~~il~~~~~ 120 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLARK 120 (1104)
T ss_dssp HSSSCCCHHHHHHHHHH----TTTCCEEECCSTTCCHHHHHHHHHHHHHTT
T ss_pred hcCCCCCHHHHHHHHHH----HcCCCEEEEeCCCCcHHHHHHHHHHHHHhc
Confidence 47889999999988765 457899999999999999998888777643
No 57
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.13 E-value=1.6e-06 Score=77.10 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 28 pf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
++.||+.|.+.++.+ .++..+|+.+|||+|||++|+.|++..+...
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~ 291 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNM 291 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTC
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhc
Confidence 345999999988765 4678999999999999999999998887664
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.11 E-value=5.6e-07 Score=76.65 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=37.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++|. +++.|.+.++.+ .+++++|+.||||+|||+++..+++..+..
T Consensus 21 ~g~~~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 67 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK 67 (702)
T ss_dssp C---CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 6774 899999988873 468899999999999999999999877654
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.11 E-value=2.5e-06 Score=63.32 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.++..++.|.+.+..+ .++..+++.||||+|||..+.++++..+...+
T Consensus 58 ~~~p~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~ 105 (235)
T 3llm_A 58 ELLPVKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQND 105 (235)
T ss_dssp HTSGGGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT
T ss_pred hcCChHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC
Confidence 3455778898877765 57889999999999999998888877665443
No 60
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.02 E-value=4.4e-06 Score=75.36 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=40.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
.++|.| +.|.+.+..+ .+++++|+.||||||||+ |++|++..+...+..
T Consensus 53 ~~g~~p-~iQ~~ai~~i----l~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~ 101 (1054)
T 1gku_B 53 CVGEPR-AIQKMWAKRI----LRKESFAATAPTGVGKTS-FGLAMSLFLALKGKR 101 (1054)
T ss_dssp TTCSCC-HHHHHHHHHH----HTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCC
T ss_pred hcCCCH-HHHHHHHHHH----HhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCe
Confidence 467778 9999988875 367899999999999999 888988877655443
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.01 E-value=6.5e-06 Score=77.99 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=41.6
Q ss_pred cCC-CC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFP-FD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fp-f~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.|+ |+ +.+.|.+.+.. ++.++.++|++||||+|||+++.++++..+..+
T Consensus 73 ~f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~ 123 (1724)
T 4f92_B 73 GFEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKH 123 (1724)
T ss_dssp TCTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGG
T ss_pred hcCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhh
Confidence 355 77 88999997765 467889999999999999999999999888653
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.91 E-value=1.5e-05 Score=75.60 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=40.1
Q ss_pred CCC-CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 28 PFD-AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 28 pf~-~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.|. ..|.|.+.+..+ +..+.++++.||||+|||+++.+|++..+...+
T Consensus 923 ~f~~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~ 971 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS 971 (1724)
T ss_dssp TCSBCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC
Confidence 355 789999987765 467789999999999999999999998876643
No 63
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.89 E-value=3.1e-06 Score=69.29 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 43 YYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 43 ~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
..++.+++++|+.||||+|||++|+.|++..+...+.+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~ 52 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLR 52 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCc
Confidence 44567789999999999999999999999877655443
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.85 E-value=3.4e-05 Score=62.23 Aligned_cols=48 Identities=13% Similarity=-0.050 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+...+||.|.+.+..+......+..+|+.++||+|||+.++..+..+.
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~ 81 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK 81 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 445599999999988877777788899999999999999776544443
No 65
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.82 E-value=1.5e-05 Score=71.54 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
++|.|+++|...+..+ .+|+ |.+|+||+|||++|++|++..
T Consensus 80 lG~~pt~VQ~~~ip~l----l~G~--Iaea~TGeGKTlaf~LP~~l~ 120 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVAL----HDGN--IAEMKTGEGKTLTSTLPVYLN 120 (844)
T ss_dssp HSCCCCHHHHHHHHHH----HTTS--EEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHhhHHH----hCCC--EEEccCCcHHHHHHHHHHHHH
Confidence 5678999999988765 3565 899999999999999998743
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.82 E-value=6e-06 Score=67.33 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhh
Q psy14273 45 TLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKI 79 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~ 79 (115)
++.+++++|+.||||||||++|+.|++..+...+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~ 38 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRL 38 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999987766553
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.71 E-value=1.6e-06 Score=75.28 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=35.9
Q ss_pred CCHHHH-----HHHHHHH--HHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 31 AYDIQS-----NFMKNLY--YTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 31 ~r~~Q~-----e~m~~I~--~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
|.+.|. ..+..+. .++.+++.+|+.||||||||++|+.|++..+...+.+
T Consensus 216 pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~ 272 (673)
T 2wv9_A 216 VSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLR 272 (673)
T ss_dssp EEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCC
T ss_pred cCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCc
Confidence 667777 5555433 3344789999999999999999999999876655433
No 68
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.69 E-value=1.8e-05 Score=64.25 Aligned_cols=32 Identities=9% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
++++++.||||+|||++|+.|++..+...+.+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~ 33 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLR 33 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999666555544
No 69
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.66 E-value=1.5e-05 Score=64.92 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=27.7
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
+..+..+|+.||||||||++|+.|++..+...+.+
T Consensus 16 l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 50 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLR 50 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCC
T ss_pred HhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCc
Confidence 44456669999999999999999998776665533
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.62 E-value=4.1e-05 Score=69.68 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHhc----------CCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 30 DAYDIQSNFMKNLYYTLDN----------SKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 30 ~~r~~Q~e~m~~I~~~l~~----------~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.+|+.|.+.++.+...+.+ ++.+++.+|||||||+++ ++++.++..
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~ 326 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE 326 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh
Confidence 4999999999999887754 257999999999999997 555566543
No 71
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.56 E-value=6.3e-05 Score=67.68 Aligned_cols=42 Identities=26% Similarity=0.188 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
++..||++|...+..+ .+|. |.+|+||+|||++|++|++..+
T Consensus 71 lg~~p~~VQ~~~i~~l----l~G~--Iaem~TGsGKTlaf~LP~l~~~ 112 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVL----NERC--IAEMRTGEGKTLTATLPAYLNA 112 (853)
T ss_dssp HSCCCCHHHHHHHHHH----HSSE--EEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCChHHHhhcccc----cCCe--eeeecCCchHHHHHHHHHHHHH
Confidence 4567999999987754 3555 9999999999999999988543
No 72
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.55 E-value=0.00017 Score=58.83 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=42.4
Q ss_pred cccCCCC-CCHHHHHHHHHHHHHHhcCC-cEEEecCCCCCchHHHHHHHHHHHHhhhh
Q psy14273 24 EFPFPFD-AYDIQSNFMKNLYYTLDNSK-FGIFESPTGTGKSLSLICGILKWYSDHKI 79 (115)
Q Consensus 24 ~~~fpf~-~r~~Q~e~m~~I~~~l~~~~-~~iiEaPTGtGKTls~L~~al~~l~~~~~ 79 (115)
-.+.+|+ .-+.|.+.+..+..++.++. +++|.||.|||||. ++...+.++...+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~-ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT-LTKFIIEALISTGE 74 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH-HHHHHHHHHHHTTC
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH-HHHHHHHHHHhcCC
Confidence 3456677 78999999999988888775 89999999999995 45666777766554
No 73
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.55 E-value=5.7e-05 Score=68.44 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=35.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
.+++.||++|...+..+ .+|+ |.+|+||+|||+++++|++..+
T Consensus 107 ~lG~rP~~VQ~~~ip~L----l~G~--Iaem~TGeGKTLa~~LP~~l~a 149 (922)
T 1nkt_A 107 VLDQRPFDVQVMGAAAL----HLGN--VAEMKTGEGKTLTCVLPAYLNA 149 (922)
T ss_dssp HHSCCCCHHHHHHHHHH----HTTE--EEECCTTSCHHHHTHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHhH----hcCC--EEEecCCCccHHHHHHHHHHHH
Confidence 36778999999987765 3554 9999999999999999986433
No 74
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.53 E-value=3.1e-05 Score=66.33 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 43 YYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 43 ~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
...+.+++.+|+.||||||||++|++|++..+...+.+
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~ 217 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLR 217 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCe
Confidence 44567889999999999999999999999887665433
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00021 Score=65.21 Aligned_cols=42 Identities=26% Similarity=0.209 Sum_probs=34.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
..+|.|+++|...+..+ .+|. |.+|.||+|||+++++|++..
T Consensus 75 ~lG~~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~ 116 (997)
T 2ipc_A 75 YLGMRHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALN 116 (997)
T ss_dssp HTCCCCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHH
Confidence 36778999999988754 4565 899999999999999998543
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0007 Score=58.98 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
...||.|.+.+..+.....++..+|+..+||.|||+..++.+...+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~ 280 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLI 280 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHH
Confidence 3589999999999888888899999999999999998877654443
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.14 E-value=0.00055 Score=61.22 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=38.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
..++.+||.|.+.+..+.. ..+..+|+.++||+|||+.++..+..++...
T Consensus 149 ~~~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g 198 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSG 198 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTS
T ss_pred CCCCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 4568899999998776543 2246789999999999999988876665443
No 78
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.00 E-value=0.0012 Score=56.12 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.-+.|.+ +|..++.+....||.||.|||||.++... +.++...+.+|
T Consensus 190 LN~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~~~-I~~l~~~~~~I 236 (646)
T 4b3f_X 190 LDTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVVEI-ILQAVKQGLKV 236 (646)
T ss_dssp CCHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHHHH-HHHHHHTTCCE
T ss_pred CCHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHHHH-HHHHHhCCCeE
Confidence 5689998 55566777789999999999999886554 44555556555
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.00 E-value=0.00096 Score=56.82 Aligned_cols=48 Identities=25% Similarity=0.129 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHh-----cCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 29 FDAYDIQSNFMKNLYYTLD-----NSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~-----~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
...||.|.+.++.++.++. ++..+|+..+||+|||+..++.+..++..
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~ 106 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ 106 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHh
Confidence 4589999999999988773 45679999999999999988887666544
No 80
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.93 E-value=0.00052 Score=60.19 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
|.+.|.+ .|..++..+..+++.||||+|||+ ++|.+.
T Consensus 94 P~~~q~~---~i~~~l~~~~~vii~gpTGSGKTt--llp~ll 130 (773)
T 2xau_A 94 PVHAQRD---EFLKLYQNNQIMVFVGETGSGKTT--QIPQFV 130 (773)
T ss_dssp GGGGGHH---HHHHHHHHCSEEEEECCTTSSHHH--HHHHHH
T ss_pred ChHHHHH---HHHHHHhCCCeEEEECCCCCCHHH--HHHHHH
Confidence 3345555 455567788899999999999998 566653
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.79 E-value=0.0031 Score=44.21 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHh-----cCCcEEEecCCCCCchHHH
Q psy14273 32 YDIQSNFMKNLYYTLD-----NSKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 32 r~~Q~e~m~~I~~~l~-----~~~~~iiEaPTGtGKTls~ 66 (115)
.+.|.+.+..+.+.+. .+..+++.||+|+|||.-+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4789998888887774 3678999999999999643
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.79 E-value=0.0015 Score=44.91 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+.-.++.+.+..+...+.+++|.||+|||||+.
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 344455556666666778999999999999964
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.79 E-value=0.002 Score=45.73 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcC------CcEEEecCCCCCchHHH
Q psy14273 33 DIQSNFMKNLYYTLDNS------KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~------~~~iiEaPTGtGKTls~ 66 (115)
+.|.+++..+.+++.+. ..++|.||+|||||..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 47777888888888765 68999999999999743
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.65 E-value=0.0019 Score=44.38 Aligned_cols=33 Identities=3% Similarity=-0.026 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+.-.++.+.+..+...+..+++.||+|||||..
T Consensus 11 ~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 11 AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHH
Confidence 334455555556666678899999999999964
No 85
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.58 E-value=0.0019 Score=43.75 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~ 66 (115)
++.+.++.+.+.+..+ .+++|.||+|+|||..+
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444556677777654 67999999999999754
No 86
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.47 E-value=0.0016 Score=45.39 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCC---cEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~~---~~iiEaPTGtGKTls~ 66 (115)
++.+.++.+..++..+. .++|.||+|+|||..+
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 34556667777777765 6899999999999643
No 87
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.47 E-value=0.0012 Score=50.55 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
-+|.+.++.+..++..+.+++|.||+|||||..
T Consensus 30 ~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 30 VGQKYMINRLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp CSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred eCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 456778888888888899999999999999964
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.002 Score=44.64 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~ 66 (115)
++.+.++.+..++.++ .+++|.||+|+|||...
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 4455666777788766 46999999999999643
No 89
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.36 E-value=0.0028 Score=53.96 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEecCCCCCch--HHHHHHHHHH
Q psy14273 32 YDIQSNFMKNLYYTLDNSKFGIFESPTGTGKS--LSLICGILKW 73 (115)
Q Consensus 32 r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKT--ls~L~~al~~ 73 (115)
-+.|...+..+ + .++.+++.||+||||| ++++++.+.-
T Consensus 151 ~~~Q~~Ai~~~---l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 151 INWQKVAAAVA---L-TRRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp CCHHHHHHHHH---H-TBSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---h-cCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 47788876654 3 6789999999999999 5566665543
No 90
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.35 E-value=0.0013 Score=57.58 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.5
Q ss_pred HHhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 45 TLDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
++.+++.+++.||||+|||++++.+++.
T Consensus 228 ~L~~~~~vlv~ApTGSGKT~a~~l~ll~ 255 (666)
T 3o8b_A 228 VPQSFQVAHLHAPTGSGKSTKVPAAYAA 255 (666)
T ss_dssp CCSSCEEEEEECCTTSCTTTHHHHHHHH
T ss_pred HHHcCCeEEEEeCCchhHHHHHHHHHHH
Confidence 4556788999999999999999887664
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.31 E-value=0.0023 Score=43.59 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~--~~~~iiEaPTGtGKTls~ 66 (115)
++.+.+..+.+.+.+ ..+++|.||+|+|||...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 26 GRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred cchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344455667777765 367999999999999654
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.24 E-value=0.0034 Score=46.68 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.2
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
..+++|.||+|||||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999653
No 93
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.24 E-value=0.0017 Score=56.48 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=19.4
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
+++.+++.||||+|||+ +++..+...
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~ 179 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA 179 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc
Confidence 56789999999999998 444444443
No 94
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.0037 Score=48.37 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCc--EEEecCCCCCchHHHHHH
Q psy14273 34 IQSNFMKNLYYTLDNSKF--GIFESPTGTGKSLSLICG 69 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~~~--~iiEaPTGtGKTls~L~~ 69 (115)
+|.+.++.+..++.++.. ++|.||.|+|||..+.+-
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 577888899999998854 999999999999765543
No 95
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0037 Score=46.70 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
|+..-+|.+.++.+..++.++. +++|.||+|+|||...-
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 3333457777888888888774 79999999999997643
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.20 E-value=0.0023 Score=53.84 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 34 IQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+|.+.++.+..++..+.++++.||+|||||..
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 56678888888999999999999999999964
No 97
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.19 E-value=0.0052 Score=45.57 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+.-..+.+.+..+...+..++|.||+|||||..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 444455555556566678999999999999964
No 98
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.19 E-value=0.0041 Score=48.64 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHh-----------------cCCcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLD-----------------NSKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~-----------------~~~~~iiEaPTGtGKTls~ 66 (115)
+|.+.++.|..++. ...+++|.||+|||||+..
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence 35556666666662 3467999999999999753
No 99
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.13 E-value=0.0041 Score=46.87 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.7
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999653
No 100
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.0021 Score=48.86 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHHH
Q psy14273 33 DIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~L 67 (115)
-+|.+.++.+..++..+ .+++|.||+|+|||..+-
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 45666778888888887 679999999999996543
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.02 E-value=0.012 Score=45.83 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhc-----CCcEEEecCCCCCchHHHH
Q psy14273 33 DIQSNFMKNLYYTLDN-----SKFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~-----~~~~iiEaPTGtGKTls~L 67 (115)
+.+..++..+.+++.+ +..++|.||+|+|||.-+.
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 131 ASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3666677777777775 5789999999999996543
No 102
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.00 E-value=0.003 Score=47.42 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEecCCCCCchHHHH
Q psy14273 34 IQSNFMKNLYYTLDNS-----------KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~-----------~~~iiEaPTGtGKTls~L 67 (115)
+|...++.+..++... .+++|.||+|||||..+-
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHH
Confidence 4555666666666553 468999999999996543
No 103
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.99 E-value=0.0071 Score=42.87 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~--~~~~iiEaPTGtGKTls~ 66 (115)
.+.+.+..+.+++.. +..++|.||+|+|||..+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 345667777777764 578999999999999653
No 104
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.98 E-value=0.0074 Score=47.01 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHhcCC--c-EEEecCCCCCchHHHHHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNSK--F-GIFESPTGTGKSLSLICG 69 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~--~-~iiEaPTGtGKTls~L~~ 69 (115)
.||.|.+.++.+.+++.+++ + .+|.||.|+|||.....-
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 47889999999999998874 3 889999999999765544
No 105
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.93 E-value=0.0077 Score=51.13 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..+.|.+.+..+ + .+...+|.||+|||||.++..-+..++...+.++
T Consensus 181 ln~~Q~~av~~~---l-~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~i 227 (624)
T 2gk6_A 181 LNHSQVYAVKTV---L-QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPV 227 (624)
T ss_dssp CCHHHHHHHHHH---H-TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCE
T ss_pred CCHHHHHHHHHH---h-cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 568999976654 3 4678899999999999875544333333234443
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0062 Score=48.58 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=25.6
Q ss_pred CHHHHH-HHHHHHHHHhcC--CcEEEecCCCCCchHHHHHH
Q psy14273 32 YDIQSN-FMKNLYYTLDNS--KFGIFESPTGTGKSLSLICG 69 (115)
Q Consensus 32 r~~Q~e-~m~~I~~~l~~~--~~~iiEaPTGtGKTls~L~~ 69 (115)
|+.|.+ +...|..++..+ .+++|.||+|||||++.-.-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v 65 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDV 65 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHH
Confidence 334444 344666666544 67899999999999875444
No 107
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.80 E-value=0.012 Score=50.03 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 28 pf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
++...+.|.+.+..+ .+++.++|.||.|||||.. +..++..+...+.++
T Consensus 187 ~~~L~~~Q~~Av~~~----~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~g~~V 235 (574)
T 3e1s_A 187 RKGLSEEQASVLDQL----AGHRLVVLTGGPGTGKSTT-TKAVADLAESLGLEV 235 (574)
T ss_dssp TTTCCHHHHHHHHHH----TTCSEEEEECCTTSCHHHH-HHHHHHHHHHTTCCE
T ss_pred cCCCCHHHHHHHHHH----HhCCEEEEEcCCCCCHHHH-HHHHHHHHHhcCCeE
Confidence 666779999977654 3568999999999999965 344455555555544
No 108
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.71 E-value=0.0046 Score=47.25 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhc----C---CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDN----S---KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~----~---~~~iiEaPTGtGKTls~ 66 (115)
+|...++.+..++.. + .+++|.||+|||||..+
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 444445555555543 2 58999999999999653
No 109
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.70 E-value=0.0062 Score=45.70 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
-|+.+.+ .+.+++.++..++|.||.|+|||.-
T Consensus 16 gR~~el~---~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 16 DREEESR---KLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp SCHHHHH---HHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred ChHHHHH---HHHHHHhcCCeEEEECCCcCCHHHH
Confidence 4555544 5556666678999999999999964
No 110
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.64 E-value=0.0037 Score=47.55 Aligned_cols=39 Identities=31% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--cCCcEEEecCCCCCchHH
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLD--NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~--~~~~~iiEaPTGtGKTls 65 (115)
+.|+..-+|..+.+.+..++. ...+++|.||+|||||..
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHH
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHH
Confidence 344422334444444443333 346799999999999965
No 111
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.59 E-value=0.015 Score=52.25 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=31.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
.+++.||++|.--.- +|.+|+ |.|+.||.||||++.+|++..+
T Consensus 71 ~lg~r~~dvQligg~----~L~~G~--iaEM~TGEGKTLva~lp~~lnA 113 (822)
T 3jux_A 71 TLGMRPFDVQVMGGI----ALHEGK--VAEMKTGEGKTLAATMPIYLNA 113 (822)
T ss_dssp HTSCCCCHHHHHHHH----HHHTTC--EEECCTTSCHHHHTHHHHHHHH
T ss_pred HhCCCCcHHHHHHHH----HHhCCC--hhhccCCCCccHHHHHHHHHHH
Confidence 456678888866433 344554 8899999999999999976444
No 112
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.57 E-value=0.011 Score=45.76 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+.-.++++.+..+...+..++|.||+|||||+.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 444555566666556678899999999999964
No 113
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.56 E-value=0.0066 Score=45.15 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.1
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
...++|.||+|||||..+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999653
No 114
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.56 E-value=0.006 Score=45.40 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 33 DIQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
-+|.+.++.+.+++.++. +++|.||+|+|||....
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 356777788888887763 69999999999996543
No 115
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.53 E-value=0.021 Score=43.76 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHhcC----CcEEEecCCCCCchHHHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNS----KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~----~~~iiEaPTGtGKTls~L 67 (115)
-++.+.+.+..+.+.+..+ ..++|.||+|+|||..+-
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3455555566677777665 369999999999997543
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.45 E-value=0.012 Score=48.48 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
+.+...+..+. ...+..++|.||||+|||.. |-.++.++...
T Consensus 153 ~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTl-L~allg~l~~~ 194 (418)
T 1p9r_A 153 AHNHDNFRRLI--KRPHGIILVTGPTGSGKSTT-LYAGLQELNSS 194 (418)
T ss_dssp HHHHHHHHHHH--TSSSEEEEEECSTTSCHHHH-HHHHHHHHCCT
T ss_pred HHHHHHHHHHH--HhcCCeEEEECCCCCCHHHH-HHHHHhhcCCC
Confidence 45666666652 24566789999999999965 34445555443
No 117
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.43 E-value=0.0093 Score=44.68 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
...++|.||+|||||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999654
No 118
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.31 E-value=0.013 Score=44.79 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCC---cEEEecCCCCCchHHH
Q psy14273 33 DIQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLSL 66 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~---~~iiEaPTGtGKTls~ 66 (115)
-+|.+.++.+.+++.++. .++|.||.|+|||..+
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 456677778888887764 3789999999999654
No 119
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.014 Score=51.57 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGI 70 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~a 70 (115)
.-+.|.+.+..+ + ++...+|.||.|||||.++..-+
T Consensus 361 Ln~~Q~~Av~~~---l-~~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 361 LNSSQSNAVSHV---L-QRPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CCHHHHHHHHHH---T-TCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCHHHHHHHHHH---h-cCCCEEEECCCCCCHHHHHHHHH
Confidence 559999976654 3 46688999999999998755443
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.23 E-value=0.015 Score=43.56 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred CcEEEecCCCCCchHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L 67 (115)
.+++|.||+|||||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.23 E-value=0.009 Score=45.42 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHh------cCCcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLD------NSKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~------~~~~~iiEaPTGtGKTls~ 66 (115)
++.+.++.+..++. ....++|.||+|+|||..+
T Consensus 23 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 23 HREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34444455555552 3467999999999999654
No 122
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.014 Score=43.39 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHHH
Q psy14273 34 IQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~L 67 (115)
+|.+.++.+.+++.++ .+++|.||.|+|||...-
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 4666777888888876 359999999999996543
No 123
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.19 E-value=0.018 Score=44.72 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcC-------CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDNS-------KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~-------~~~iiEaPTGtGKTls~ 66 (115)
+|...++.+..++..+ .+++|.||+|+|||..+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 3445556666666543 68999999999999643
No 124
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.11 E-value=0.019 Score=50.78 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh-hhhhh
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD-HKIAG 81 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~-~~~~v 81 (115)
.-+.|.+.+..+ + .+...+|.||.|||||.++..- +..+.. .+.++
T Consensus 357 Ln~~Q~~Av~~~---l-~~~~~lI~GppGTGKT~ti~~~-i~~l~~~~~~~i 403 (800)
T 2wjy_A 357 LNHSQVYAVKTV---L-QRPLSLIQGPPGTGKTVTSATI-VYHLARQGNGPV 403 (800)
T ss_dssp CCHHHHHHHHHH---H-TSSEEEEECCTTSCHHHHHHHH-HHHHHTTCSSCE
T ss_pred CCHHHHHHHHHh---c-cCCeEEEEcCCCCCHHHHHHHH-HHHHHHcCCCcE
Confidence 568999966654 3 4578899999999999875444 444433 34443
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.07 E-value=0.016 Score=44.35 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.7
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999754
No 126
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.05 E-value=0.019 Score=48.20 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 38 FMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 38 ~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+++.+.-++..+..++|.||||+|||..+ -.++.++
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 45566667788999999999999999643 3334444
No 127
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=94.99 E-value=0.015 Score=47.28 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHH-----HHHHHhcCCc--EEEecCCCCCchHHHHH
Q psy14273 29 FDAYDIQSNFMKN-----LYYTLDNSKF--GIFESPTGTGKSLSLIC 68 (115)
Q Consensus 29 f~~r~~Q~e~m~~-----I~~~l~~~~~--~iiEaPTGtGKTls~L~ 68 (115)
|.+...|.++.+. |..++..|.+ ++..|+||||||.+.+-
T Consensus 58 f~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 58 FDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred ecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEec
Confidence 4466678877765 3345555654 57799999999998753
No 128
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.98 E-value=0.019 Score=48.47 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~ 66 (115)
-+|...++.+..++..+.+++|.||+|||||..+
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHH
Confidence 4678889999999999999999999999999654
No 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.94 E-value=0.051 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||..+
T Consensus 40 ~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999653
No 130
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.92 E-value=0.04 Score=44.73 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhcC----CcEEEecCCCCCchHHHHH
Q psy14273 33 DIQSNFMKNLYYTLDNS----KFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~----~~~iiEaPTGtGKTls~L~ 68 (115)
....+.+..+.+.+..+ ..++|.||+|||||+...+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHH
Confidence 34444444455555554 4799999999999975443
No 131
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.91 E-value=0.023 Score=44.44 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.1
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
..+++|.||+|||||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999653
No 132
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.83 E-value=0.043 Score=40.35 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=13.9
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||+|||||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4689999999999964
No 133
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.82 E-value=0.02 Score=43.45 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHhcCC---cEEEecCCCCCchHHHHH
Q psy14273 32 YDIQSNFMKNLYYTLDNSK---FGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 32 r~~Q~e~m~~I~~~l~~~~---~~iiEaPTGtGKTls~L~ 68 (115)
.-+|.+.++.+.+++.++. .+++.+|+|+|||...-+
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHH
Confidence 3466677788888888763 356788899999976443
No 134
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.79 E-value=0.022 Score=47.04 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhc-------------------CCcEEEecCCCCCchHHHH
Q psy14273 34 IQSNFMKNLYYTLDN-------------------SKFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~-------------------~~~~iiEaPTGtGKTls~L 67 (115)
+|...++.+..++.. ...++|.||+|+|||..+-
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHH
Confidence 455556666666654 2579999999999997543
No 135
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.77 E-value=0.012 Score=48.40 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCCCHHHHHHH---HHHHHHHhcCC--cEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFM---KNLYYTLDNSK--FGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m---~~I~~~l~~~~--~~iiEaPTGtGKTls~ 66 (115)
|+-.-+|.+.+ ..+.+.+.++. .++|.||+|||||..+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 44455777777 77888888775 5999999999999653
No 136
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.69 E-value=0.022 Score=46.66 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCcEEEecCCCCCchHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~--~~~~iiEaPTGtGKTls~L 67 (115)
+++--+|.+.|+.+...+.. ..+++|.||+|+|||...-
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 34444566677778888854 4689999999999997543
No 137
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.69 E-value=0.016 Score=45.75 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHh--------------cCCcEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLD--------------NSKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~--------------~~~~~iiEaPTGtGKTls~ 66 (115)
|+-.-+|...++.|...+. ....++|.||+|||||+.+
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4434456666666666552 2367999999999999653
No 138
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=94.61 E-value=0.017 Score=46.64 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=30.5
Q ss_pred cccCC--CCCCHHHHHHHHHHHHHHh---cC--CcEEEecCCCCCchHHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNLYYTLD---NS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I~~~l~---~~--~~~iiEaPTGtGKTls~L 67 (115)
.|.|. |.+...|.++.+.|...+. +| ..++..|+||||||.+.+
T Consensus 53 ~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 53 EFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp EEEESEEECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred EEeeCEEECCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 34444 4466778888887765443 34 346679999999999874
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.60 E-value=0.019 Score=43.92 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.2
Q ss_pred cEEEecCCCCCchHHH
Q psy14273 51 FGIFESPTGTGKSLSL 66 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~ 66 (115)
+++|.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 140
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.52 E-value=0.039 Score=43.90 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 40 KNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 40 ~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+.+.-++..|..++|.||||+|||..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHH
Confidence 67777888999999999999999953
No 141
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.48 E-value=0.045 Score=41.69 Aligned_cols=33 Identities=21% Similarity=0.088 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhcC----CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDNS----KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~----~~~iiEaPTGtGKTls~ 66 (115)
.+......+.+.+... ..++|.||+|+|||..+
T Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 18 GNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHH
T ss_pred cHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHH
Confidence 3344445555555543 57999999999999653
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.014 Score=44.56 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-hcC--CcEEEecCCCCCchHHHH
Q psy14273 34 IQSNFMKNLYYTL-DNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 34 ~Q~e~m~~I~~~l-~~~--~~~iiEaPTGtGKTls~L 67 (115)
+|.+.++.+.+++ ..+ .+++|.||+|+|||..+-
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 5677778888887 554 469999999999997643
No 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.47 E-value=0.037 Score=42.45 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcC---CcEEEecCCCCCchHHHHH
Q psy14273 38 FMKNLYYTLDNS---KFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 38 ~m~~I~~~l~~~---~~~iiEaPTGtGKTls~L~ 68 (115)
++..+...+..- .++++.||.|||||...++
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 366666666653 3689999999999976543
No 144
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.017 Score=47.48 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=28.8
Q ss_pred ccCC--CCCCHHHHHHHHHHHHHH---hcC--CcEEEecCCCCCchHHHH
Q psy14273 25 FPFP--FDAYDIQSNFMKNLYYTL---DNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 25 ~~fp--f~~r~~Q~e~m~~I~~~l---~~~--~~~iiEaPTGtGKTls~L 67 (115)
|.|. |.+...|.++.+.|...+ .+| ..++..|+||||||.+.+
T Consensus 110 F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 110 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp EEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred EEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4444 446667777776654433 245 346679999999999974
No 145
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.46 E-value=0.02 Score=49.34 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhcCC-----------cEEEecCCCCCchHHHH
Q psy14273 34 IQSNFMKNLYYTLDNSK-----------FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~~-----------~~iiEaPTGtGKTls~L 67 (115)
+|.+.++.|.+++.... +++|.||||||||...-
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR 539 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH
Confidence 46677777777765421 59999999999996543
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.44 E-value=0.025 Score=44.40 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.1
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
...++|.||+|||||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999654
No 147
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.36 E-value=0.035 Score=45.97 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.-+.|.+.+. ..++.++|.||.|||||.+++.=+...+..
T Consensus 10 Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~ 49 (647)
T 3lfu_A 10 LNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSV 49 (647)
T ss_dssp CCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578888665 235778999999999998877665555543
No 148
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=94.35 E-value=0.02 Score=46.84 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=30.0
Q ss_pred ccCC--CCCCHHHHHHHHHHHHHHh---cC--CcEEEecCCCCCchHHHH
Q psy14273 25 FPFP--FDAYDIQSNFMKNLYYTLD---NS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 25 ~~fp--f~~r~~Q~e~m~~I~~~l~---~~--~~~iiEaPTGtGKTls~L 67 (115)
|.|. |.+...|.++.+.|...+. +| ..++..|.||||||.+.+
T Consensus 85 F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 85 FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp EECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred eeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4444 4466788888887765443 34 346679999999999874
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.28 E-value=0.031 Score=43.70 Aligned_cols=36 Identities=6% Similarity=-0.110 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEecCCCCCchHHHHHH
Q psy14273 34 IQSNFMKNLYYTLDNSK--FGIFESPTGTGKSLSLICG 69 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~~--~~iiEaPTGtGKTls~L~~ 69 (115)
+|.+.+..+.+.+.++. +.+|.||.|+|||....+-
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHH
Confidence 57888999999998875 6889999999998765443
No 150
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=94.20 E-value=0.022 Score=46.03 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=29.4
Q ss_pred ccccCC--CCCCHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHH
Q psy14273 23 SEFPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSL 66 (115)
Q Consensus 23 ~~~~fp--f~~r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~ 66 (115)
..|.|. |.+...|.++.+.+. ..+.+|. .++..|+||||||.+.
T Consensus 44 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred eEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 345555 346667888776543 3333553 4667999999999997
No 151
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.15 E-value=0.026 Score=43.47 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||+.+
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46899999999999654
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.12 E-value=0.13 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.6
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999754
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.12 E-value=0.073 Score=40.63 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
+..++|.||+|||||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 457899999999999653
No 154
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.08 E-value=0.039 Score=47.48 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCcEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~--~~~~iiEaPTGtGKTls~ 66 (115)
+++--+|.+.|+.+...+.. ..+++|.||+|||||...
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 44445667777788888855 468999999999999753
No 155
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.08 E-value=0.019 Score=42.38 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||..+
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45889999999999653
No 156
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.95 E-value=0.038 Score=41.80 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=24.7
Q ss_pred hcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 47 DNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..+...++.||+|+|||.++|-.+..+... +.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kV 43 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKY 43 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEE
Confidence 456788899999999998877776666543 4443
No 157
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.93 E-value=0.071 Score=45.78 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=34.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCC-cEEEecCCCCCchHHH
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSK-FGIFESPTGTGKSLSL 66 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~-~~iiEaPTGtGKTls~ 66 (115)
+-||.|.+.|.+.+..+...+.++. ..++.+.||+|||+++
T Consensus 4 ~~~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~ 45 (664)
T 1c4o_A 4 YRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTM 45 (664)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHH
Confidence 4568899999999999999988874 5678899999999864
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.92 E-value=0.03 Score=42.32 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHhc------CCcEEEecCCCCCchHHH
Q psy14273 31 AYDIQSNFMKNLYYTLDN------SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~------~~~~iiEaPTGtGKTls~ 66 (115)
-|..+.+ .+.+++.. +..++|.||+|+|||..+
T Consensus 24 gr~~e~~---~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 24 HREDQIR---KIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp TCHHHHH---HHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred ChHHHHH---HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 3444444 55555542 467999999999999654
No 159
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=93.89 E-value=0.03 Score=45.18 Aligned_cols=45 Identities=33% Similarity=0.360 Sum_probs=29.8
Q ss_pred CccccCC--CCCCHHHHHHHHHHH----HHHhcC--CcEEEecCCCCCchHHH
Q psy14273 22 PSEFPFP--FDAYDIQSNFMKNLY----YTLDNS--KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 22 ~~~~~fp--f~~r~~Q~e~m~~I~----~~l~~~--~~~iiEaPTGtGKTls~ 66 (115)
...|.|. |.+...|.++.+.+. ..+.+| ..++..|+||||||.+.
T Consensus 60 ~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 60 QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455555 446677888776632 333345 34667999999999986
No 160
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.88 E-value=0.024 Score=48.59 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhc---C--------CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDN---S--------KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~---~--------~~~iiEaPTGtGKTls~ 66 (115)
+|.+.++.|.+++.. | .+++|.||||||||..+
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 455666666666543 1 26899999999999653
No 161
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=93.88 E-value=0.022 Score=46.45 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHH---HHHHhcCC--cEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNL---YYTLDNSK--FGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I---~~~l~~~~--~~iiEaPTGtGKTls~ 66 (115)
|.+...|.++.+.+ ...+.+|. .++..|+||||||.+.
T Consensus 55 f~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 55 FDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp ECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred ECCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 44667788777653 22333553 4667999999999997
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.80 E-value=0.034 Score=43.80 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.4
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999754
No 163
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.70 E-value=0.043 Score=44.64 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||+.+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999654
No 164
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=93.64 E-value=0.016 Score=46.42 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHH---HHhcCC--cEEEecCCCCCchHHHH
Q psy14273 29 FDAYDIQSNFMKNLYY---TLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~---~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
|.+...|.++.+.|.. .+.+|. .++..|+||||||.+.+
T Consensus 56 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 56 FSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred eCCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 3466678777765432 223453 46679999999999873
No 165
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=93.57 E-value=0.034 Score=44.78 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHh---cC--CcEEEecCCCCCchHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLD---NS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~---~~--~~~iiEaPTGtGKTls~L 67 (115)
|.+...|.++.+.|...+. +| ..++..|+||||||.+.+
T Consensus 61 f~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred ECCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4466778888877665443 34 346679999999999874
No 166
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=93.51 E-value=0.021 Score=45.68 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=30.6
Q ss_pred CccccCC--CCCCHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 22 PSEFPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 22 ~~~~~fp--f~~r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
+..|.|. |.+...|.++.+.+. ..+.+|. .++..|+||||||.+..
T Consensus 43 ~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3445555 446677888776643 3333553 46679999999999975
No 167
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=93.50 E-value=0.022 Score=46.15 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHH----HHhcCC--cEEEecCCCCCchHHHH
Q psy14273 29 FDAYDIQSNFMKNLYY----TLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~----~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
|.+...|.++.+.+.. .+.+|. .++..|+||||||.+.+
T Consensus 63 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred EeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 3466678887776543 333453 46679999999999875
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.49 E-value=0.055 Score=42.04 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.4
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
+.++|.||+|||||+.+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 46899999999999653
No 169
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=93.49 E-value=0.024 Score=46.11 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=30.7
Q ss_pred CccccCC--CCCCHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 22 PSEFPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 22 ~~~~~fp--f~~r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
+..|.|. |.+...|.++.+.+. ..+.+|. .++..|+||||||.+..
T Consensus 50 ~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 50 GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 3445555 447778888776643 2333553 46679999999999873
No 170
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.48 E-value=0.064 Score=42.25 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCCchH
Q psy14273 37 NFMKNLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 37 e~m~~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
.+.+.+.-.+..+..+++.||||+|||.
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 3566777778889999999999999996
No 171
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.45 E-value=0.033 Score=38.91 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.8
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|.||+|+|||.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999854
No 172
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=93.37 E-value=0.046 Score=43.93 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=28.9
Q ss_pred cccCC--CCCCHHHHHHHHHH----HHHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I----~~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
.|.|. |.+...|.++.+.+ ...+.+|. .++..|+||||||.+..
T Consensus 51 ~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 51 HFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred eEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeec
Confidence 34444 44667788777663 33333553 46679999999999863
No 173
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.35 E-value=0.049 Score=38.96 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=23.2
Q ss_pred hcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 47 DNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..|..+++.|++|+|||.-.+--+...+...+..+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v 62 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCc
Confidence 34578999999999999654444444444444443
No 174
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.29 E-value=0.026 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcC-----------CcEEEecCCCCCchHHH
Q psy14273 34 IQSNFMKNLYYTLDNS-----------KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~-----------~~~iiEaPTGtGKTls~ 66 (115)
+|...|+.+..++... ..++|.||||||||..+
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 3556666666666432 36899999999999653
No 175
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.29 E-value=0.089 Score=44.45 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
..+.|.+.+.. .++.++|.|+.|||||.+++.=+...+..
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~ 42 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRG 42 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 45788886653 36788999999999999877666655554
No 176
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.27 E-value=0.11 Score=40.71 Aligned_cols=30 Identities=13% Similarity=-0.085 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcC----CcEEEecCCCCCchHHHH
Q psy14273 38 FMKNLYYTLDNS----KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 38 ~m~~I~~~l~~~----~~~iiEaPTGtGKTls~L 67 (115)
+...++.++... ..++|.||.|||||+.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 445577777654 368999999999997654
No 177
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=93.26 E-value=0.029 Score=45.75 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=28.3
Q ss_pred cccCC--CCCCHHHHHHHHHHHH----HHhcC--CcEEEecCCCCCchHHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNLYY----TLDNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I~~----~l~~~--~~~iiEaPTGtGKTls~L 67 (115)
.|.|. |.+...|.++.+.+.. .+.+| ..++..|.||||||.+.+
T Consensus 68 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred EEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 34444 3455678777765432 22345 346679999999999864
No 178
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=93.09 E-value=0.046 Score=44.24 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.4
Q ss_pred cccCC--CCCCHHHHHHHHHH----HHHHhcC--CcEEEecCCCCCchHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNL----YYTLDNS--KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I----~~~l~~~--~~~iiEaPTGtGKTls~ 66 (115)
.|.|. |.+...|.++.+.+ ...+.+| ..++..|+||||||.+.
T Consensus 57 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred EeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34454 44667787777653 2333355 34667999999999987
No 179
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=92.99 E-value=0.028 Score=45.98 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=28.7
Q ss_pred cccCC--CCCCHHHHHHHHHHH----HHHhcC--CcEEEecCCCCCchHHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNLY----YTLDNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I~----~~l~~~--~~~iiEaPTGtGKTls~L 67 (115)
.|.|. |.+...|.++.+.+. ..+.+| ..++..|+||||||.+..
T Consensus 69 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp EEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred EEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34444 446677887776543 233355 346679999999999864
No 180
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=92.93 E-value=0.031 Score=45.25 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=28.8
Q ss_pred cccCC--CCCCHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~L~ 68 (115)
.|.|. |.+...|.++.+.+. ..+.+|. .++..|+||||||.+.+-
T Consensus 48 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred EEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeec
Confidence 34444 446667877776432 2333453 466799999999998743
No 181
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.91 E-value=0.048 Score=38.25 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..++|.||+|+|||.-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 4577889999999999853
No 182
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.90 E-value=0.054 Score=41.34 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 38 FMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 38 ~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
.++.+. +..+..++|.||||+|||..
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHH
Confidence 344544 66778899999999999964
No 183
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.88 E-value=0.2 Score=36.57 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.0
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|.||+|+|||..
T Consensus 51 g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999954
No 184
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.88 E-value=0.14 Score=51.06 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+-|...-..+...+..++..++.+++.||||||||+.
T Consensus 1247 iVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1247 VIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred eEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHH
Confidence 3366666677777778888999999999999999975
No 185
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=92.84 E-value=0.047 Score=47.15 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHH---HHhcCC--cEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNLYY---TLDNSK--FGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~---~l~~~~--~~iiEaPTGtGKTls~ 66 (115)
|.+...|.++.+.|.. .+.+|. .++..|.||||||.+.
T Consensus 438 f~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 438 FEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp ECSSCCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3455667776554432 223453 4566899999999986
No 186
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=92.81 E-value=0.042 Score=45.24 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--cEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I----~~~l~~~~--~~iiEaPTGtGKTls~ 66 (115)
|.+...|.++.+.+ ...+.+|. .++..|+||||||.+.
T Consensus 73 f~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp ECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred ecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34667788877753 23333553 4667999999999987
No 187
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.80 E-value=0.078 Score=37.31 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHhcCCcEEEecCCCCCchHHHHHH
Q psy14273 45 TLDNSKFGIFESPTGTGKSLSLICG 69 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls~L~~ 69 (115)
.+..|..+++.||+|+|||.-+.+-
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHH
Confidence 3455678999999999999654443
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.046 Score=38.52 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.1
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|.||+|+|||.-
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999953
No 189
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=92.79 E-value=0.024 Score=45.82 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=28.5
Q ss_pred ccCC--CCCCHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 25 FPFP--FDAYDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 25 ~~fp--f~~r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
|.|. |.+...|.++.+.+. ..+-+|. .++..|+||||||.+.+
T Consensus 74 F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp EECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred EEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 4444 446667888776543 3333553 46679999999999873
No 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=92.76 E-value=0.035 Score=45.89 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred cccCC--CCCCHHHHHHHHHHHH---HHhcC--CcEEEecCCCCCchHHH
Q psy14273 24 EFPFP--FDAYDIQSNFMKNLYY---TLDNS--KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 24 ~~~fp--f~~r~~Q~e~m~~I~~---~l~~~--~~~iiEaPTGtGKTls~ 66 (115)
.|.|. |.+...|.++.+.|.. .+.+| ..++..|+||||||.+.
T Consensus 107 ~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 107 IFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp EEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred EEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 34454 4466677776654432 22345 34667999999999986
No 191
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.70 E-value=0.065 Score=42.67 Aligned_cols=31 Identities=23% Similarity=0.093 Sum_probs=21.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
..|+++-||||+|||.++ -.++..+...+..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~g~~ 83 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLRGDR 83 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHTTCE
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHCCCc
Confidence 468999999999999974 3334444344433
No 192
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.63 E-value=0.056 Score=37.85 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..+..++|.||+|+|||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4677899999999999853
No 193
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.55 E-value=0.074 Score=38.04 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=21.3
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+..|..+++.||+|+|||.-.+.-+...+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45567899999999999976554444444
No 194
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.50 E-value=0.049 Score=36.43 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=13.1
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
..++|.||+|+|||.
T Consensus 2 ~~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 2 KVILITGMPGSGKSE 16 (179)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368899999999995
No 195
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.48 E-value=0.069 Score=45.69 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCcEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~--~~~~iiEaPTGtGKTls~ 66 (115)
|++.-++.+.++.+.+.+.. +.+++|.||+|+|||...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 33333455666677777765 467999999999999654
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.33 E-value=0.063 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 39 MKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 39 m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
++.+.-.+..|..++|.||+|+|||.-+++-+.......+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 4455555677889999999999999765554444443334
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.32 E-value=0.068 Score=38.55 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.4
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567899999999999954
No 198
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=92.27 E-value=0.034 Score=46.09 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--cEEEecCCCCCchHHHHH
Q psy14273 29 FDAYDIQSNFMKNL----YYTLDNSK--FGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 29 f~~r~~Q~e~m~~I----~~~l~~~~--~~iiEaPTGtGKTls~L~ 68 (115)
|.+...|.++.+.+ ...+.+|. .++..|.||||||.+..-
T Consensus 129 F~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred EecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 44666787777653 23333553 466799999999999754
No 199
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.26 E-value=0.22 Score=50.40 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+-|...-..+...+..++..++.+++.||||||||..
T Consensus 1284 lVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1284 VIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred eecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 4466666666777778888999999999999999954
No 200
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.25 E-value=0.16 Score=43.53 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=36.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhcCC-cEEEecCCCCCchHHH
Q psy14273 24 EFPFPFDAYDIQSNFMKNLYYTLDNSK-FGIFESPTGTGKSLSL 66 (115)
Q Consensus 24 ~~~fpf~~r~~Q~e~m~~I~~~l~~~~-~~iiEaPTGtGKTls~ 66 (115)
.+.-||.|+..|...+..+...+.++. ..++.+.||+|||+.+
T Consensus 6 ~~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~ 49 (661)
T 2d7d_A 6 ELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV 49 (661)
T ss_dssp CCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH
T ss_pred eeecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH
Confidence 445689999999999999998988875 5678899999999753
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.2 Score=41.65 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHH-Hhc-----------CCcEEEecCCCCCchHHH
Q psy14273 32 YDIQSNFMKNLYYT-LDN-----------SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 32 r~~Q~e~m~~I~~~-l~~-----------~~~~iiEaPTGtGKTls~ 66 (115)
.+.|.+-+..+... +.. .+-+++.||+|||||+.+
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 46676666555544 222 146889999999999753
No 202
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.09 E-value=0.11 Score=43.22 Aligned_cols=17 Identities=35% Similarity=0.392 Sum_probs=14.6
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
.++++.||+|+|||...
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 57999999999999653
No 203
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.03 E-value=0.3 Score=36.40 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHhc-----------CCcEEEecCCCCCchHH
Q psy14273 31 AYDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~-----------~~~~iiEaPTGtGKTls 65 (115)
-.+.+..-++.+...+.. ...++|.||+|+|||..
T Consensus 44 g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 44 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred ChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 345555555555555432 13488999999999964
No 204
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.22 Score=41.15 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhc--------C----CcEEEecCCCCCchHHH
Q psy14273 32 YDIQSNFMKNLYYTLDN--------S----KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 32 r~~Q~e~m~~I~~~l~~--------~----~~~iiEaPTGtGKTls~ 66 (115)
...|.+-+......... | +-+++.||+|||||+.+
T Consensus 177 l~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 177 LDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 46666665554443222 1 34889999999999653
No 205
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.99 E-value=0.043 Score=46.69 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCC-------------cEEEecCCCCCchHH
Q psy14273 35 QSNFMKNLYYTLDNSK-------------FGIFESPTGTGKSLS 65 (115)
Q Consensus 35 Q~e~m~~I~~~l~~~~-------------~~iiEaPTGtGKTls 65 (115)
|.++...+..++..+. ++++.||+|||||..
T Consensus 300 ~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 300 HWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQM 343 (595)
T ss_dssp CHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHH
T ss_pred hHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHH
Confidence 4445555555555553 899999999999963
No 206
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.96 E-value=0.061 Score=37.41 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..+..++|+||.|+|||..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567899999999999853
No 207
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.95 E-value=0.14 Score=42.55 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.7
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
..++|.||+|||||+.+
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 56999999999999753
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.93 E-value=0.097 Score=45.84 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcC--CcEEEecCCCCCchHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNS--KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~--~~~iiEaPTGtGKTls~ 66 (115)
|++.-++.+.++.+...+..+ .+++|.||+|+|||..+
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 344445567777888877664 57999999999999643
No 209
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.92 E-value=0.17 Score=43.54 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.-+.|.+.+.. .++.++|.|+.|||||.++..=+...+..
T Consensus 12 Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~ 51 (724)
T 1pjr_A 12 LNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAE 51 (724)
T ss_dssp SCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 56889886552 35788899999999999876665555543
No 210
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.87 E-value=0.11 Score=37.24 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.7
Q ss_pred HHhcCCcEEEecCCCCCchHHHHHH
Q psy14273 45 TLDNSKFGIFESPTGTGKSLSLICG 69 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls~L~~ 69 (115)
.+..|..++|.||+|+|||.-+.+-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 4567789999999999999755443
No 211
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.87 E-value=0.084 Score=40.37 Aligned_cols=16 Identities=25% Similarity=0.136 Sum_probs=13.3
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+++.||+|||||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999964
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.09 Score=43.66 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.4
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
+.+++.||+|||||+.+
T Consensus 216 rGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeeEEECcCCCCHHHHH
Confidence 46889999999999653
No 213
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=91.84 E-value=0.092 Score=43.15 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHH----HHHHhcC--CcEEEecCCCCCchHHHHH
Q psy14273 29 FDAYDIQSNFMKNL----YYTLDNS--KFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 29 f~~r~~Q~e~m~~I----~~~l~~~--~~~iiEaPTGtGKTls~L~ 68 (115)
|.+...|.++.+.+ ...+.+| ..++..|.||||||.+..-
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred EecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 44666787777653 3333355 3466799999999998754
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.82 E-value=0.11 Score=40.39 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
+..+++-||+|+|||.....-+..+....+++|
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V 137 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKI 137 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEE
Confidence 457888999999999775555444443345444
No 215
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.76 E-value=0.075 Score=36.53 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=14.2
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
+..++|+||.|+|||.
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5678999999999995
No 216
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.71 E-value=0.13 Score=41.11 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=20.9
Q ss_pred hcCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 47 DNSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
..+..++|.||||+|||.. |-.++.++...
T Consensus 121 ~~~g~i~I~GptGSGKTTl-L~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT-LAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH-HHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHhcccCC
Confidence 4556889999999999964 33445555443
No 217
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.62 E-value=0.13 Score=43.54 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=20.9
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
.+.|+++-|+||+|||..+-+-++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999987655544443
No 218
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.57 E-value=0.082 Score=37.60 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=15.8
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..+..++|.||+|+|||..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHH
Confidence 34577899999999999964
No 219
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.53 E-value=0.15 Score=36.59 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=21.1
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
+...++.||.|+|||..++--+..+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567889999999999887766555543
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.29 E-value=0.1 Score=37.32 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=20.2
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
+..|..++|.||+|+|||.-++.-+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 445678999999999999765554443
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.28 E-value=0.099 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|-||+|+|||.-
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999853
No 222
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.29 Score=41.04 Aligned_cols=35 Identities=26% Similarity=0.121 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHhc------------CCcEEEecCCCCCchHHH
Q psy14273 32 YDIQSNFMKNLYYTLDN------------SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 32 r~~Q~e~m~~I~~~l~~------------~~~~iiEaPTGtGKTls~ 66 (115)
.+.|.+-+.++...... .+-+++.||.|||||+.+
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 46777766665554221 145889999999999753
No 223
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.22 E-value=0.11 Score=40.01 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHH-H-HHhc----CCcEEE--ecCCCCCchHHH
Q psy14273 31 AYDIQSNFMKNLY-Y-TLDN----SKFGIF--ESPTGTGKSLSL 66 (115)
Q Consensus 31 ~r~~Q~e~m~~I~-~-~l~~----~~~~ii--EaPTGtGKTls~ 66 (115)
-|..+.+.+.... . ++.. ...++| .||.|+|||..+
T Consensus 26 gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 26 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred ChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 4555555444433 2 2222 357888 999999999654
No 224
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.20 E-value=0.089 Score=36.44 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=14.5
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
...+++.||+|+|||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46789999999999953
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.05 E-value=0.076 Score=37.93 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.1
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..+..++|.||+|+|||.
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 4467889999999999985
No 226
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.04 E-value=0.16 Score=37.24 Aligned_cols=33 Identities=24% Similarity=0.096 Sum_probs=24.8
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+...++.||.|+|||.++|--+..+. ..+.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV 39 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKI 39 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEE
Confidence 456788999999999988877766665 445554
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.02 E-value=0.053 Score=37.70 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.1
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..|..+++.||+|+|||.
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 4567789999999999985
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.97 E-value=0.12 Score=36.31 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=18.0
Q ss_pred HhcCCcEEEecCCCCCchHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~ 68 (115)
+..|..+++.||+|+|||.-.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHH
Confidence 44567899999999999965443
No 229
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.94 E-value=0.25 Score=40.09 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcC---CcEEEecCCCCCchHHH
Q psy14273 38 FMKNLYYTLDNS---KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 38 ~m~~I~~~l~~~---~~~iiEaPTGtGKTls~ 66 (115)
....+....... ..++|.||+|+|||..+
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 444555555443 47999999999999653
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.87 E-value=0.069 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=11.8
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|.||+|+|||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3467888999999999854
No 231
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.13 Score=42.50 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHH-Hhc-----------CCcEEEecCCCCCchHH
Q psy14273 32 YDIQSNFMKNLYYT-LDN-----------SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 32 r~~Q~e~m~~I~~~-l~~-----------~~~~iiEaPTGtGKTls 65 (115)
...|.+-++++... +.. .+-+++.||.|||||+.
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 46676666655544 221 24689999999999975
No 232
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.82 E-value=0.12 Score=41.87 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 40 KNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 40 ~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
+.+...+..|..++|.|++|+|||.-.+.-+...+...+.+|
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~V 235 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENV 235 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCE
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcE
Confidence 333334556678999999999999766655555554444343
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.79 E-value=0.13 Score=37.56 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=15.6
Q ss_pred HHHHHHhcCCcEEEecCCCCCchH
Q psy14273 41 NLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 41 ~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
.|.=.+..|..++|-||+|+|||.
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -------CCCCEEEECSTTSSHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHH
Confidence 333445678899999999999985
No 234
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.67 E-value=0.15 Score=35.33 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.9
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..+..++|+||.|+|||.
T Consensus 6 m~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH
T ss_pred CcCCCEEEEECCCCCCHHH
Confidence 3456789999999999995
No 235
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.65 E-value=0.084 Score=42.24 Aligned_cols=30 Identities=20% Similarity=0.467 Sum_probs=20.6
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
+..+..++|.||||+|||..+ -.++.++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll-~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI-ASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH-HHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH-HHHHhhcCc
Confidence 456678999999999999643 333444443
No 236
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=90.56 E-value=0.11 Score=42.06 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 33 DIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 33 ~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
..|.++.+.+. ..+.+|. .++..|+||||||.+.+
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 46877776553 2333553 46679999999999874
No 237
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.51 E-value=0.12 Score=36.08 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.3
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|+||.|+|||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467899999999999953
No 238
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.36 E-value=0.3 Score=48.71 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~ 68 (115)
+.+-+.+..-+-.+++++.....+++.||||+|||.++=+
T Consensus 903 l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 903 FSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4445556555666777777788899999999999987543
No 239
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.35 E-value=0.15 Score=35.97 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.4
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|-||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4678899999999953
No 240
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.34 E-value=0.14 Score=34.61 Aligned_cols=15 Identities=33% Similarity=0.235 Sum_probs=12.9
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|.||.|+|||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999953
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.33 E-value=0.16 Score=35.15 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=15.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|.|+.|+|||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 456799999999999964
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.28 E-value=0.12 Score=38.44 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.0
Q ss_pred cCCcEEEecCCCCCchH
Q psy14273 48 NSKFGIFESPTGTGKSL 64 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTl 64 (115)
.++.++|.||+|+|||.
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 46789999999999995
No 243
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=90.25 E-value=0.1 Score=42.13 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHH
Q psy14273 32 YDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSL 66 (115)
Q Consensus 32 r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~ 66 (115)
+..|.++.+.+. ..+.+|. .++..|+||||||.+.
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 445777765543 3333553 4667999999999997
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.21 E-value=0.11 Score=36.76 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=18.8
Q ss_pred HHhcCCcEEEecCCCCCchHHHHHH
Q psy14273 45 TLDNSKFGIFESPTGTGKSLSLICG 69 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls~L~~ 69 (115)
.+..|..+.|.||+|+|||.-+.+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHH
Confidence 3445678999999999999654443
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.16 E-value=0.16 Score=36.43 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=16.1
Q ss_pred HHhcCCcEEEecCCCCCchHH
Q psy14273 45 TLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls 65 (115)
.+..|..+.|-||+|+|||.-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 457788999999999999954
No 246
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.15 E-value=0.33 Score=36.12 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 30 DAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 30 ~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
--|+.+.+ .+.+ +.. ..++|.||.|+|||.-
T Consensus 16 ~gR~~el~---~L~~-l~~-~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 16 FDREKEIE---KLKG-LRA-PITLVLGLRRTGKSSI 46 (357)
T ss_dssp CCCHHHHH---HHHH-TCS-SEEEEEESTTSSHHHH
T ss_pred cChHHHHH---HHHH-hcC-CcEEEECCCCCCHHHH
Confidence 34655544 4445 555 6899999999999964
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.15 E-value=0.087 Score=36.43 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++++||.|+|||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999953
No 248
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=90.10 E-value=0.17 Score=41.06 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH----HHHhcC--CcEEEecCCCCCchHHHH
Q psy14273 33 DIQSNFMKNLY----YTLDNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 33 ~~Q~e~m~~I~----~~l~~~--~~~iiEaPTGtGKTls~L 67 (115)
..|.++.+.+. ..+.+| ..++..|.||||||.+.+
T Consensus 83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 35777666543 333355 346679999999999875
No 249
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.09 E-value=0.22 Score=34.37 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.5
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
..+|.||+|+|||.- +-+|.++.
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 678999999999953 45566654
No 250
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=90.07 E-value=0.16 Score=42.33 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHH----HHhcC--CcEEEecCCCCCchHHHH
Q psy14273 32 YDIQSNFMKNLYY----TLDNS--KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 32 r~~Q~e~m~~I~~----~l~~~--~~~iiEaPTGtGKTls~L 67 (115)
+..|.++.+.+.. .+.+| ..++..|.||||||.+.+
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 3567777765533 23355 346679999999999873
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.06 E-value=0.092 Score=36.81 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.7
Q ss_pred hcCCcEEEecCCCCCchHHHH
Q psy14273 47 DNSKFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L 67 (115)
..|..+++.||+|+|||.-+=
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456788999999999996543
No 252
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.04 E-value=0.21 Score=34.65 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=18.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
...+|.||+|+|||.- +-|+.|+.
T Consensus 24 g~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHH
Confidence 4678899999999954 55566654
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.01 E-value=0.12 Score=35.10 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=12.6
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++.||.|+|||.
T Consensus 4 ~I~i~G~~GsGKST 17 (181)
T 1ly1_A 4 IILTIGCPGSGKST 17 (181)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEecCCCCCHHH
Confidence 57899999999985
No 254
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.01 E-value=0.37 Score=40.24 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCchHHH
Q psy14273 50 KFGIFESPTGTGKSLSL 66 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~ 66 (115)
+.++|.||+|||||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999753
No 255
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.88 E-value=0.33 Score=35.78 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
..|...++. +..|..+.+-||+|+|||.-
T Consensus 10 ~g~~~~l~~----i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 10 LGQKHYVDA----IDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHHHHH----HHHCSEEEEECCTTSSTTHH
T ss_pred HhHHHHHHh----ccCCCEEEEECCCCCCHHHH
Confidence 345554444 47888999999999999854
No 256
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.85 E-value=0.21 Score=37.00 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=19.1
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.+..++||||.|+|||.-. --+..++..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~-~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR-DYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHH-HHHHHHHHH
Confidence 4678999999999998532 223345543
No 257
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.78 E-value=0.13 Score=35.70 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=12.5
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|+|+.|+|||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 57899999999995
No 258
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.74 E-value=0.29 Score=36.33 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=20.7
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
.|..++|||+.|+|||.- +-.+..++...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~-~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA-RNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHH-HHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHcC
Confidence 367899999999999854 233345565544
No 259
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.70 E-value=0.12 Score=36.12 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.4
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|+|+.|+|||.-
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45789999999999853
No 260
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.65 E-value=0.15 Score=41.23 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 40 KNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 40 ~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
+.+..-+..|..++|.|++|+|||.-.+--+...+...+.++
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~v 232 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGV 232 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 333334555678999999999999766655555554444444
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.63 E-value=0.18 Score=40.83 Aligned_cols=17 Identities=41% Similarity=0.474 Sum_probs=14.1
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.||||+|||.-
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35789999999999953
No 262
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.58 E-value=0.13 Score=37.04 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.4
Q ss_pred cCCcEEEecCCCCCchH
Q psy14273 48 NSKFGIFESPTGTGKSL 64 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTl 64 (115)
....++|+||.|+|||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34679999999999985
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.58 E-value=0.18 Score=34.50 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..+++.|+.|+|||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45789999999999854
No 264
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.55 E-value=0.16 Score=42.79 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=14.0
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
+-++|.||.|||||+.
T Consensus 244 rGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLC 259 (467)
T ss_dssp SEEEECSCTTSSHHHH
T ss_pred CceEeeCCCCCcHHHH
Confidence 5688999999999965
No 265
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.51 E-value=0.27 Score=35.70 Aligned_cols=31 Identities=10% Similarity=-0.113 Sum_probs=21.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..+.|.|+.|+|||. ++..++.++...+.++
T Consensus 5 ~~i~i~G~sGsGKTT-l~~~L~~~l~~~g~~v 35 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTT-LMEKWVAAAVREGWRV 35 (169)
T ss_dssp CEEEEECCTTSSHHH-HHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCCHHH-HHHHHHHhhHhcCCee
Confidence 357789999999985 4445566665555444
No 266
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.46 E-value=0.51 Score=39.65 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=36.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy14273 26 PFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78 (115)
Q Consensus 26 ~fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~ 78 (115)
..||.++|.|..++..+ .....+++..|-|+|||.....-++.++...+
T Consensus 159 ~~~~~l~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~ 207 (592)
T 3cpe_A 159 VIKVQLRDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK 207 (592)
T ss_dssp SBBCCCCHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS
T ss_pred cccCcCCHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC
Confidence 36788999999998876 24577999999999999876544444444433
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.46 E-value=0.33 Score=37.18 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.0
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
..+|+.||.|+|||.
T Consensus 34 ~livl~G~sGsGKST 48 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTS 48 (287)
T ss_dssp EEEEEECCTTSCTHH
T ss_pred eEEEEECCCCCCHHH
Confidence 358899999999985
No 268
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.43 E-value=0.14 Score=37.10 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.6
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
....++|+||.|+|||.-
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 456799999999999953
No 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.38 E-value=0.28 Score=35.38 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
..++|.||.|+|||. ++..++..+...+.+
T Consensus 7 ~~i~i~G~sGsGKTT-l~~~l~~~l~~~g~~ 36 (174)
T 1np6_A 7 PLLAFAAWSGTGKTT-LLKKLIPALCARGIR 36 (174)
T ss_dssp CEEEEECCTTSCHHH-HHHHHHHHHHHTTCC
T ss_pred eEEEEEeCCCCCHHH-HHHHHHHhccccCCc
Confidence 467889999999985 444445555444333
No 270
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.37 E-value=0.31 Score=38.26 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=19.5
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
.+.++++-||||+|||..+-.-+..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999997654443333
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.34 E-value=0.19 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=13.9
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.||||+|||.-
T Consensus 3 ~~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKT 19 (322)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCcCCHHHH
Confidence 34678999999999953
No 272
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.28 E-value=0.22 Score=38.52 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 41 ~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
.+..-+..|..++|.|++|+|||.-.+.-+...+.
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33344556788999999999999655555555544
No 273
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.20 E-value=0.43 Score=43.63 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
....+.|.+.+. ..+++++|.|+-|||||.+++-=++..+..
T Consensus 9 ~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~ 50 (1232)
T 3u4q_A 9 STWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITA 50 (1232)
T ss_dssp -CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 345789998665 247799999999999999877766665554
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.10 E-value=0.14 Score=38.37 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.3
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|.||||||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 47899999999985
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.09 E-value=0.17 Score=37.62 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=15.6
Q ss_pred HHhcCCcEEEecCCCCCchH
Q psy14273 45 TLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTl 64 (115)
.+..|..++|.||+|+|||.
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 45568899999999999995
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.05 E-value=0.14 Score=35.41 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|+|+.|+|||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999953
No 277
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.98 E-value=0.21 Score=35.42 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.4
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..+..++|.||.|+|||..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567899999999999853
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.88 E-value=0.23 Score=33.84 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.||.|+|||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999853
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.83 E-value=0.15 Score=34.95 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=14.0
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|+|+.|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999854
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.81 E-value=0.15 Score=34.92 Aligned_cols=14 Identities=43% Similarity=0.639 Sum_probs=12.5
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|+||.|+|||.
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999984
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.79 E-value=0.25 Score=36.96 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGIL 71 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al 71 (115)
+..|..++|.||+|+|||.-++.-+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45678899999999999976554443
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=88.76 E-value=0.32 Score=41.99 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=22.1
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
..|+++-|.||+|||..+-..++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999998876666655543
No 283
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.74 E-value=0.38 Score=34.26 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=18.9
Q ss_pred HHHHHHHHHhc-----CCcEEEecCCCCCchHH
Q psy14273 38 FMKNLYYTLDN-----SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 38 ~m~~I~~~l~~-----~~~~iiEaPTGtGKTls 65 (115)
.++.+...+.+ +..+.|.||+|+|||..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHH
Confidence 34455555543 34678899999999854
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.73 E-value=0.28 Score=36.36 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
...++|.||.|+|||.
T Consensus 29 ~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4578999999999984
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.69 E-value=0.22 Score=39.32 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCCCchH
Q psy14273 37 NFMKNLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 37 e~m~~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
..++.|.-.+..|..+.|-||+|+|||.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHH
Confidence 4566666667788999999999999984
No 286
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.65 E-value=0.17 Score=35.50 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=15.1
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|+|+.|+|||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456899999999999953
No 287
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.53 E-value=0.24 Score=39.00 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=18.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
+.-+|.||||+|||. |+=|+.|+.
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHH
Confidence 467899999999995 366677754
No 288
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.52 E-value=0.23 Score=35.53 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=16.0
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..+..++|+|+.|+|||.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 4566789999999999985
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.52 E-value=0.12 Score=37.15 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHHHHh----cCCcEEEecCCCCCchH
Q psy14273 38 FMKNLYYTLD----NSKFGIFESPTGTGKSL 64 (115)
Q Consensus 38 ~m~~I~~~l~----~~~~~iiEaPTGtGKTl 64 (115)
+++.|...+. .+..+.|-||+|+|||.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 4444544443 34577899999999984
No 290
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.45 E-value=0.31 Score=35.84 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=17.6
Q ss_pred CcEEEecCCCCCchHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
.+.++.|+.|||||+....-++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999998654443343
No 291
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.43 E-value=0.21 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.0
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
+..++|+||.|+|||.
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4678999999999985
No 292
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.39 E-value=0.19 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|+|+.|+|||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999953
No 293
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.38 E-value=0.17 Score=36.96 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.3
Q ss_pred cCCcEEEecCCCCCchH
Q psy14273 48 NSKFGIFESPTGTGKSL 64 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTl 64 (115)
.|..+.|+||.|+|||.
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 35678899999999985
No 294
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.37 E-value=0.28 Score=37.34 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.3
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
+..++|.||||+|||.
T Consensus 34 g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSE 49 (205)
T ss_dssp TEEEEEECCCTTTTHH
T ss_pred CEEEEEECCCCCCHHH
Confidence 3458899999999984
No 295
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=88.30 E-value=0.27 Score=39.81 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHH----HHHhcCC--cEEEecCCCCCchHHHH
Q psy14273 32 YDIQSNFMKNLY----YTLDNSK--FGIFESPTGTGKSLSLI 67 (115)
Q Consensus 32 r~~Q~e~m~~I~----~~l~~~~--~~iiEaPTGtGKTls~L 67 (115)
...|.++.+.+. ..+.+|. .++..|+||||||.+.+
T Consensus 81 ~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 81 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 345766665543 3333553 45669999999999864
No 296
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.21 E-value=0.33 Score=35.21 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=19.3
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
...+|.||+|+|||.. +-|+.|+...
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 4678899999999954 5556776553
No 297
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.08 E-value=0.2 Score=34.64 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=12.8
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|+||.|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999853
No 298
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.04 E-value=0.18 Score=37.48 Aligned_cols=32 Identities=16% Similarity=-0.095 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEecCCCCCchHH
Q psy14273 34 IQSNFMKNLYYTLD-NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~-~~~~~iiEaPTGtGKTls 65 (115)
.+..++........ ++..++|||+.|+|||.-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 8 PKRSCPSFSASSEGTRIKKISIEGNIAAGKSTF 40 (263)
T ss_dssp ---------------CCEEEEEECSTTSSHHHH
T ss_pred hhccCCCCcccccccCceEEEEECCCCCCHHHH
Confidence 33334444333332 346789999999999953
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.01 E-value=0.22 Score=34.19 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.||.|+|||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45788999999999853
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.96 E-value=0.27 Score=39.78 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCcEEEecCCCCCchH
Q psy14273 40 KNLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 40 ~~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
+.+.-.+..+..+++.||+|+|||.
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHH
T ss_pred HhcccccCCCCEEEEECCCCCCHHH
Confidence 3333334566789999999999985
No 301
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.91 E-value=0.21 Score=36.59 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.0
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
+.+||.||.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 458999999999985
No 302
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.81 E-value=0.23 Score=34.35 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=14.9
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|.|+.|+|||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999853
No 303
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.76 E-value=0.31 Score=37.02 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.1
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+++.||+|+|||+-
T Consensus 46 GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEEESSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 488999999999964
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.74 E-value=0.29 Score=34.34 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.1
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|.|+.|+|||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999954
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.60 E-value=0.28 Score=34.74 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.9
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..|..+.+.||.|+|||.
T Consensus 30 i~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp CSSCEEEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3567788899999999984
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.35 E-value=0.25 Score=33.54 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.|+.|+|||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3688999999999853
No 307
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=87.34 E-value=0.94 Score=37.97 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCcEEEecCCCCCchHHH
Q psy14273 32 YDIQSNFMKNLYYTLDN-----------SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 32 r~~Q~e~m~~I~~~l~~-----------~~~~iiEaPTGtGKTls~ 66 (115)
.+.+..-+..+...+.+ .+.++|.||+|||||+.+
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 34555555555555543 134889999999999653
No 308
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.33 E-value=0.35 Score=40.44 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
+.+++|.||+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999653
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.33 E-value=0.4 Score=33.96 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.6
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..+..++|.||.|+|||..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4567888999999999853
No 310
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.33 E-value=0.32 Score=39.07 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.3
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||||+|||.-
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 4578899999999953
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.18 E-value=0.3 Score=34.41 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.9
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||.|+|||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4789999999999953
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.16 E-value=0.23 Score=34.57 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++++|+.|+|||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45788999999999853
No 313
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.12 E-value=0.23 Score=34.00 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|+|+.|+|||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999963
No 314
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.11 E-value=0.29 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.7
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|+||.|+|||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999953
No 315
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.07 E-value=0.23 Score=37.43 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=13.1
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..++||||.|+|||.-
T Consensus 23 ~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp CCCCEEEEECCC---CHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 4578899999999999853
No 316
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.06 E-value=0.27 Score=33.75 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.4
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|+|+.|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999985
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.95 E-value=0.22 Score=34.16 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=10.4
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|+|+.|+|||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 46789999999999953
No 318
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.79 E-value=0.35 Score=36.75 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhc---CCcEEEecCCCCCchHH
Q psy14273 36 SNFMKNLYYTLDN---SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 36 ~e~m~~I~~~l~~---~~~~iiEaPTGtGKTls 65 (115)
...++.+.-.+.. +..++|.||.|+|||..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHH
Confidence 3466777666667 89999999999999864
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.77 E-value=0.22 Score=34.65 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=13.2
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||+|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4578899999999863
No 320
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.70 E-value=0.32 Score=39.87 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 41 NLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 41 ~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+..-+..|..++|.|++|+|||.-.+--+...+.. +.++
T Consensus 189 ~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~v 228 (444)
T 3bgw_A 189 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVV 228 (444)
T ss_dssp HHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEE
T ss_pred hhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEE
Confidence 333345566789999999999997666666666654 4343
No 321
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.69 E-value=0.23 Score=37.06 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.5
Q ss_pred hcCCcEEEecCCCCCchH
Q psy14273 47 DNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTl 64 (115)
..|..+.|-||+|+|||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 457888999999999994
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.69 E-value=0.27 Score=34.52 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|+||.|+|||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999953
No 323
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.60 E-value=0.27 Score=34.83 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=12.7
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|.||.|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999853
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.58 E-value=0.76 Score=36.41 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCC------cEEEecCCCCCchHH
Q psy14273 34 IQSNFMKNLYYTLDNSK------FGIFESPTGTGKSLS 65 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~~~------~~iiEaPTGtGKTls 65 (115)
...+.+..+...+..+. .+.|.||+|+|||..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTT 108 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHH
Confidence 34444555555555553 577899999999954
No 325
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.54 E-value=0.3 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=14.0
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
...++|+|+.|+|||.
T Consensus 16 ~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4579999999999985
No 326
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.51 E-value=0.51 Score=34.23 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=18.6
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
.++|||+-|+|||.- +--...++...+..
T Consensus 2 fI~~EG~DGsGKsTq-~~~L~~~L~~~g~~ 30 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQ-IQLLAQYLEKRGKK 30 (197)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHHCCCc
Confidence 478999999999853 22233566655443
No 327
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.45 E-value=0.26 Score=36.54 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=15.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..++|+||.|+|||.-
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 467899999999999853
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.39 E-value=0.28 Score=34.63 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=14.0
Q ss_pred cCCcEEEecCCCCCchH
Q psy14273 48 NSKFGIFESPTGTGKSL 64 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTl 64 (115)
.+..+.|.||+|+|||.
T Consensus 5 ~~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTT 21 (211)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CcEEEEEECCCCCCHHH
Confidence 45567889999999985
No 329
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.21 E-value=0.43 Score=37.48 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 38 FMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 38 ~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
.++.+.-.+..+..+.|-||+|+|||.- |-.+..++.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTL-l~~l~g~~~ 80 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTT-IDALGSLLT 80 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHH-HHHHHHhhh
Confidence 4444433344567788999999999953 333334443
No 330
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.18 E-value=0.4 Score=42.10 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=14.7
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.||+|||||+.
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999964
No 331
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.01 E-value=0.69 Score=34.78 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=18.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
+..++|||+.|+|||.- .-.+..++..
T Consensus 21 ~~~i~~~G~~g~GKst~-~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQ-SHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 56789999999999854 2223344444
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.99 E-value=0.31 Score=34.66 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=12.7
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|.||.|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999853
No 333
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.98 E-value=0.86 Score=46.32 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICG 69 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~ 69 (115)
+.+-+.+..=+-.+++.+....-+++-||||+|||.++=+-
T Consensus 886 L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 886 LVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 33445555544555666655666888999999999886443
No 334
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=85.94 E-value=0.87 Score=36.21 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 33 DIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
+.-.++++.+.+....+..+++.+++||||++.
T Consensus 144 ~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~l 176 (387)
T 1ny5_A 144 PKMKEILEKIKKISCAECPVLITGESGVGKEVV 176 (387)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHH
T ss_pred HHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHH
Confidence 455555666666555667899999999999964
No 335
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.91 E-value=0.34 Score=34.89 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.2
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|+|+.|+|||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45789999999999853
No 336
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.91 E-value=0.96 Score=31.79 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhc--CCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 33 DIQSNFMKNLYYTLDN--SKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 33 ~~Q~e~m~~I~~~l~~--~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
+...+..+.+...+.. -..+++-|++|+|||. ++...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTT-l~~~l~~~ 53 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTL-LIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHH-HHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHH-HHHHHHHH
Confidence 3444455555555433 2467889999999994 33343433
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.83 E-value=0.27 Score=36.72 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.5
Q ss_pred hcCCcEEEecCCCCCchH
Q psy14273 47 DNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTl 64 (115)
..|..+.|-||+|+|||.
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457889999999999984
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.82 E-value=0.27 Score=36.69 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.2
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
...++++|+.|+|||..
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 45789999999999953
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.71 E-value=0.33 Score=32.87 Aligned_cols=15 Identities=20% Similarity=-0.084 Sum_probs=12.8
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|+|+.|+|||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578999999999853
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.66 E-value=0.36 Score=35.33 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
...++|.||+|+|||.
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4689999999999985
No 341
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.66 E-value=0.44 Score=38.05 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||||+|||.-
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999954
No 342
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.63 E-value=0.31 Score=35.80 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 38 FMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 38 ~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
.++.|.=.+..+..+.|.||+|+|||..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHH
Confidence 3444444455666788999999999854
No 343
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.62 E-value=0.33 Score=33.09 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
++++|.|+.|||||.
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 578999999999985
No 344
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.44 E-value=0.12 Score=36.45 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=12.4
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|+||.|+|||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57899999999984
No 345
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.29 E-value=0.33 Score=36.27 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.|..++|||+.|+|||.-
T Consensus 4 ~g~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CCCEEEEEECSSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 578899999999999853
No 346
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.28 E-value=0.27 Score=36.45 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.5
Q ss_pred hcCCcEEEecCCCCCchH
Q psy14273 47 DNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTl 64 (115)
..|..+.|-||+|+|||.
T Consensus 32 ~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp ETTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 457888999999999984
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.27 E-value=0.73 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=26.5
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
....+++-.++|.|||.+.+..++..+ .++.+|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV 59 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNV 59 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeE
Confidence 456888889999999999999988777 445555
No 348
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.27 E-value=0.55 Score=37.20 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=16.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
..+|.||||+|||.- +=+++|+.
T Consensus 25 ~~~i~G~NGaGKTTl--l~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL--FEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHh
Confidence 677899999999943 34566663
No 349
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.27 E-value=0.7 Score=35.42 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=22.2
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.++.|+|||...+.-+...+. .+.+|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCE
Confidence 4888999999999887776665554 45444
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.26 E-value=0.57 Score=36.79 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=19.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.||+|+|||.....-+..+. ..+.+|
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kV 136 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYA-ELGYKV 136 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeE
Confidence 577889999999977555544443 344444
No 351
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.12 E-value=0.51 Score=36.69 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCchHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L 67 (115)
..+.+-||+|+|||..+-
T Consensus 101 ~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 467789999999997543
No 352
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.03 E-value=0.44 Score=38.09 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 40 KNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 40 ~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
+.+..-+..|..++|.|++|+|||.-.+--+...+. .+.+|
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~V 77 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGV 77 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeE
Confidence 344445666788999999999999766655555554 34443
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.01 E-value=0.2 Score=40.94 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=25.6
Q ss_pred HHhcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 45 TLDNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 45 ~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
-+..|..++|.|++|+|||.-.+--+...+..++.++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~v 274 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKV 274 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcE
Confidence 3455678999999999999766655555554434443
No 354
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.96 E-value=0.38 Score=34.93 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.5
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|+||.|+|||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999985
No 355
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.90 E-value=0.65 Score=36.34 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhc----------CCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 34 IQSNFMKNLYYTLDN----------SKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 34 ~Q~e~m~~I~~~l~~----------~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
.+.-+.+.+.+.+.. +..+++.||+|+|||.....-+..+
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 455555555555532 2357789999999997654444333
No 356
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.81 E-value=0.28 Score=36.25 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.4
Q ss_pred hcCCcEEEecCCCCCchH
Q psy14273 47 DNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTl 64 (115)
..|..+.+-||+|+|||.
T Consensus 28 ~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST 45 (224)
T ss_dssp ETTCEEEEEECTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 457788899999999994
No 357
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=84.62 E-value=1.3 Score=35.97 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 27 FPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 27 fpf~~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.||.+.|.|..++..+. ..+.+++..|-+.|||.....-++.++..
T Consensus 160 ~p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~ 205 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF 205 (385)
T ss_dssp EECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHh
Confidence 67888999999988763 34679999999999998655555443433
No 358
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.61 E-value=0.35 Score=34.55 Aligned_cols=14 Identities=21% Similarity=0.062 Sum_probs=12.4
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|+||.|+|||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999985
No 359
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.56 E-value=0.53 Score=39.05 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.2
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||||+|||.-
T Consensus 3 ~~i~i~GptgsGKttl 18 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEEECSSSSHHHH
T ss_pred cEEEEECcchhhHHHH
Confidence 3578999999999943
No 360
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.43 E-value=0.35 Score=35.92 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=16.4
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34678889999999999853
No 361
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.33 E-value=0.34 Score=36.54 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=16.3
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.+-||+|+|||.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 34578888999999999953
No 362
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.33 E-value=0.34 Score=36.47 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.5
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34678899999999999953
No 363
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.19 E-value=0.36 Score=36.62 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.5
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34678899999999999953
No 364
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.97 E-value=0.36 Score=36.03 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.9
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.+-||+|+|||.-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577888999999999853
No 365
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.97 E-value=0.34 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=13.5
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
+..+.|.||+|+|||.
T Consensus 21 ~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT 36 (207)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4567899999999985
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.96 E-value=0.49 Score=32.62 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.|+.|+|||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4688999999999854
No 367
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=83.90 E-value=0.28 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.8
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577888999999999953
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.86 E-value=0.84 Score=35.55 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=15.3
Q ss_pred CCcEEEecCCCCCchHHHHH
Q psy14273 49 SKFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~ 68 (115)
+..+.+-||+|+|||..+-+
T Consensus 102 g~vi~lvG~nGsGKTTll~~ 121 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK 121 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45777889999999965433
No 369
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.70 E-value=0.66 Score=37.32 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..++|.||||+|||.-
T Consensus 8 ~lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 8 FLIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCcCcHHHH
Confidence 3688999999999953
No 370
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.63 E-value=0.44 Score=36.05 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=19.6
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHhh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSDH 77 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~~ 77 (115)
.+..++|+||.|+|||.- +--+..++...
T Consensus 26 ~~~~i~~eG~~GsGKsT~-~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTA-IQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHH-HHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 467899999999999953 22233444443
No 371
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.56 E-value=0.38 Score=35.27 Aligned_cols=16 Identities=50% Similarity=0.839 Sum_probs=14.0
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
++.++|||+-|+|||.
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 4578999999999996
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.56 E-value=0.45 Score=33.92 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.0
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.|+.|+|||..
T Consensus 4 ~~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTV 20 (218)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999953
No 373
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.54 E-value=0.38 Score=36.09 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4578889999999999853
No 374
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.52 E-value=0.39 Score=36.43 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.9
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4577888999999999953
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=83.49 E-value=1 Score=34.48 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=14.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..+.|.||+|+|||..
T Consensus 79 ~g~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTT 96 (308)
T ss_dssp CCEEEEEEECTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345677899999999853
No 376
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.47 E-value=0.76 Score=35.35 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=19.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
+..+|.||||+|||. |+-|+.|+.
T Consensus 25 g~~~i~G~NGsGKS~--ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKSN--IIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCSTH--HHHHHHHTS
T ss_pred CcEEEECCCCCcHHH--HHHHHHHHh
Confidence 378899999999995 466677764
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.44 E-value=0.52 Score=36.42 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=19.7
Q ss_pred hcCCcEEEecCCCCCchHHHHHHHHHH
Q psy14273 47 DNSKFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
..+..++|.||+|+|||.-.+.-+...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 345789999999999997655544443
No 378
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.26 E-value=0.71 Score=36.60 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=21.1
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+..+..++|.||+|+|||.-.+.-+...+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33567899999999999976555544444
No 379
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.23 E-value=0.41 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.4
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578899999999999953
No 380
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.06 E-value=0.42 Score=36.27 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.4
Q ss_pred hcCCcEEEecCCCCCchH
Q psy14273 47 DNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTl 64 (115)
..|..+.|-||+|+|||.
T Consensus 30 ~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKST 47 (262)
T ss_dssp CTTCEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 457788899999999995
No 381
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.05 E-value=0.63 Score=32.99 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=13.4
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
+..+.|.||+|+|||.
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3568899999999984
No 382
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.05 E-value=0.39 Score=35.01 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.7
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
+..++|+|+.|+|||.
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 3468999999999995
No 383
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=83.03 E-value=0.6 Score=33.31 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=12.7
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
++.|-||+|+|||.-
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999964
No 384
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.98 E-value=0.52 Score=32.39 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.5
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.++|.||.|+|||.
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 58899999999985
No 385
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=82.89 E-value=0.42 Score=36.21 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.9
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.+-||+|+|||.-
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4577889999999999953
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.88 E-value=0.43 Score=36.28 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.3
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 34578888999999999953
No 387
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.77 E-value=0.44 Score=36.40 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.0
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..|..+.|-||+|+|||.
T Consensus 42 i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCCCHHH
Confidence 3467889999999999994
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.77 E-value=0.42 Score=36.48 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=15.9
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4578889999999999953
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=82.68 E-value=0.69 Score=33.51 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=13.9
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
|..+.+-||+|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 35678899999999964
No 390
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=82.68 E-value=0.42 Score=36.14 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.5
Q ss_pred hcCCcEEEecCCCCCchH
Q psy14273 47 DNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTl 64 (115)
..|..+.+-||+|+|||.
T Consensus 29 ~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKST 46 (253)
T ss_dssp ETTCEEEEECCSSSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457788899999999995
No 391
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.40 E-value=0.87 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=21.3
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+..+..++|.||+|+|||.-.+.-+...+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999976655544444
No 392
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=82.33 E-value=0.84 Score=36.45 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=20.3
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
.+...+|-||+|+|||. |+-++.|+..
T Consensus 25 ~~~~~~i~G~nG~GKst--ll~ai~~~~~ 51 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSN--MMDAISFVLG 51 (430)
T ss_dssp TCSEEEEECSTTSSHHH--HHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHhhhc
Confidence 46788999999999995 3445666653
No 393
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.26 E-value=1.7 Score=36.16 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=21.4
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..+++.|++|+|||.+...-+ .++...+.++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~~G~kV 131 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQKRGYKV 131 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHTTTCCE
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHHCCCeE
Confidence 367889999999998755444 4444555554
No 394
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.25 E-value=0.47 Score=36.28 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.8
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 4577888999999999953
No 395
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.24 E-value=2.4 Score=33.13 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCchHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L 67 (115)
..++|.|++|+|||..+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999996533
No 396
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.16 E-value=2 Score=33.78 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+..+.|-|++|+|||. +|-.++.++
T Consensus 74 ~~~v~lvG~pgaGKST-Lln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKST-FIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHH-HHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHH-HHHHHHHHh
Confidence 3467889999999995 333334443
No 397
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=82.01 E-value=0.96 Score=36.87 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHHh----cCCcEEEecCCCCCchHH
Q psy14273 29 FDAYDIQSNFMKNLYYTLD----NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 29 f~~r~~Q~e~m~~I~~~l~----~~~~~iiEaPTGtGKTls 65 (115)
|--|+...+ .|.+.+. ....++|.||.|+|||.-
T Consensus 126 ~vGR~~~l~---~L~~~L~~~~~~~~~v~I~G~~GiGKTtL 163 (591)
T 1z6t_A 126 FVTRKKLVN---AIQQKLSKLKGEPGWVTIHGMAGCGKSVL 163 (591)
T ss_dssp CCCCHHHHH---HHHHHHTTSTTSCEEEEEECCTTSSHHHH
T ss_pred ecccHHHHH---HHHHHHhcccCCCceEEEEcCCCCCHHHH
Confidence 445665444 5555664 235688999999999953
No 398
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=81.92 E-value=0.47 Score=36.48 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.9
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..|..+.|-||+|+|||.
T Consensus 44 i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3457888899999999985
No 399
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.82 E-value=0.65 Score=32.52 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=12.8
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|.||.|+|||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999954
No 400
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.74 E-value=0.86 Score=37.69 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=20.5
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.||+|+|||.+...-+. ++...+.+|
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~~G~kV 128 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKKRGYKV 128 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHcCCeE
Confidence 577899999999977555443 444455554
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=81.41 E-value=0.85 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.4
Q ss_pred CcEEEecCCCCCchHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L 67 (115)
..+.+-||+|+|||..+-
T Consensus 158 ~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 467789999999997543
No 402
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.32 E-value=1.1 Score=35.44 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.6
Q ss_pred CCcEEEecCCCCCchHHH
Q psy14273 49 SKFGIFESPTGTGKSLSL 66 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~ 66 (115)
+..+.+-||+|+|||..+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999653
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.31 E-value=0.57 Score=36.06 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.3
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578889999999999853
No 404
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.02 E-value=0.78 Score=35.88 Aligned_cols=25 Identities=12% Similarity=-0.150 Sum_probs=18.8
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
.|..++|.||+|+|||.-.+.-+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999765554444
No 405
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=80.80 E-value=1 Score=34.98 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=16.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
+.-+|.||+|+|||.- +=|+.|+.
T Consensus 24 ~~~~i~G~NGsGKS~l--leAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSL--LDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHh
Confidence 4567899999999964 34455543
No 406
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=80.65 E-value=2.2 Score=33.77 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls 65 (115)
..+...++.+.+.........+++.|++||||++.
T Consensus 134 ~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~l 168 (368)
T 3dzd_A 134 EHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIV 168 (368)
T ss_dssp CSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHH
T ss_pred cchHHHHHHhhhhhhhccchhheEEeCCCchHHHH
Confidence 34555556666666666677899999999999954
No 407
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.60 E-value=0.73 Score=35.17 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=18.7
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
.+..++|.||+|+|||.-.+.-+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999765544443
No 408
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.45 E-value=1 Score=36.86 Aligned_cols=31 Identities=19% Similarity=0.008 Sum_probs=20.0
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.+++|+|||.+..--+..+...++++|
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kV 132 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKV 132 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeE
Confidence 4667799999999875555444443324444
No 409
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.45 E-value=0.87 Score=33.80 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.9
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..+.|.||+|+|||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999853
No 410
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.44 E-value=0.72 Score=41.11 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.8
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
+.+++.||.|||||+-
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999964
No 411
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=80.43 E-value=0.51 Score=36.61 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.|..+.|-||+|+|||.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467888999999999954
No 412
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.16 E-value=1.4 Score=34.06 Aligned_cols=16 Identities=44% Similarity=0.837 Sum_probs=12.9
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+.|.||+|+|||..
T Consensus 32 ~ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567899999999853
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.06 E-value=0.89 Score=37.48 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=23.1
Q ss_pred HHHHHHH-HHhcCCcEEEecCCCCCchHHHHH
Q psy14273 38 FMKNLYY-TLDNSKFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 38 ~m~~I~~-~l~~~~~~iiEaPTGtGKTls~L~ 68 (115)
.++.|.- .+..|..++|.||+|+|||.-+.+
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHH
Confidence 3455554 556788999999999999965544
No 414
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.05 E-value=0.86 Score=36.64 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=19.3
Q ss_pred cCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
.|..++|.||+|+|||.-.+.-+....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999975555444433
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.96 E-value=1.6 Score=32.18 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.3
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+++.||.|+|||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999853
No 416
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=79.93 E-value=0.85 Score=32.04 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=12.4
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+.|.||.|+|||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999853
No 417
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.93 E-value=1.3 Score=34.07 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=17.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
..+.+.+++|+|||.....-+..+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566779999999976555444433
No 418
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=79.45 E-value=1.1 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.128 Sum_probs=14.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..+.+-|++|+|||..
T Consensus 55 ~~~~i~i~G~~g~GKSTl 72 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTF 72 (341)
T ss_dssp CSEEEEEEECTTSCHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 345677889999999964
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=79.35 E-value=0.76 Score=34.22 Aligned_cols=15 Identities=27% Similarity=0.164 Sum_probs=13.0
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+++.|+.|+|||..
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 420
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=79.01 E-value=0.7 Score=31.98 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.2
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+.|.|++|||||..
T Consensus 9 ~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999953
No 421
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=78.63 E-value=1.3 Score=35.58 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=20.4
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~~l 74 (115)
+..+..++|.||+|+|||.-.+.-+...+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 33557889999999999965554444433
No 422
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.27 E-value=1.1 Score=40.00 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.7
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
+.+++.||.|||||+.
T Consensus 512 ~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLL 527 (806)
T ss_dssp SCCEEESSTTSSHHHH
T ss_pred ceEEEecCCCCCchHH
Confidence 4589999999999954
No 423
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=78.14 E-value=0.67 Score=40.68 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=14.6
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.||+|||||+.
T Consensus 511 ~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCBCCTTSSHHHH
T ss_pred CceeEEECCCCCCHHHH
Confidence 46789999999999974
No 424
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=78.03 E-value=1.7 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=24.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
+...++.||-|+|||..+|--+..+... +.++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kV 59 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQHA 59 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEE
Confidence 5567789999999999888887777644 4443
No 425
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.95 E-value=1.2 Score=37.78 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.0
Q ss_pred CcEEEecCCCCCchHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~ 68 (115)
..+.|-||+|+|||..+-+
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 4677899999999976444
No 426
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.78 E-value=1.6 Score=33.75 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=19.1
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.+++|+|||.....-+..+. ..+.++
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v 129 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYK-KKGFKV 129 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHH-HTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeE
Confidence 566789999999976555444443 334443
No 427
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=77.76 E-value=1.8 Score=34.42 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhc----------------CCcEEEecCCCCCchHH
Q psy14273 36 SNFMKNLYYTLDN----------------SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 36 ~e~m~~I~~~l~~----------------~~~~iiEaPTGtGKTls 65 (115)
.+.+..+..+|.+ |.-++|.|+.|+|||..
T Consensus 115 s~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~ 160 (314)
T 1ko7_A 115 TQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSET 160 (314)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHH
T ss_pred hHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHH
Confidence 3456677777776 66789999999999743
No 428
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.25 E-value=0.79 Score=34.98 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.7
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+. |..+.+-||+|+|||.-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHH
T ss_pred EC-CEEEEEECCCCCCHHHH
Confidence 35 77888999999999954
No 429
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.72 E-value=3.6 Score=28.84 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCchHHHHHHHHHH
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKW 73 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~ 73 (115)
..+++-|..|+|||. ++.-.+..
T Consensus 39 ~~i~ivG~~gvGKTt-l~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTL-LIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHH-HHHHHHHH
T ss_pred eEEEEEcCCCCCHHH-HHHHHHHH
Confidence 457778999999994 44444433
No 430
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=76.55 E-value=2.2 Score=34.97 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=19.6
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.|++|+|||.....-+..+ ...+.++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l-~~~G~kV 130 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYI-QKRGLKP 130 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHH-HHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHcCCeE
Confidence 67789999999997654443333 3334444
No 431
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=76.16 E-value=0.69 Score=32.08 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.3
Q ss_pred cCCcEEEecCCCCCchH
Q psy14273 48 NSKFGIFESPTGTGKSL 64 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTl 64 (115)
.+..+++-|++|+|||.
T Consensus 25 ~~~~v~lvG~~g~GKST 41 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSS 41 (210)
T ss_dssp CSEEEEEEECTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678899999999994
No 432
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=76.08 E-value=0.87 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.0
Q ss_pred HhcCCcEEEecCCCCCchH
Q psy14273 46 LDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTl 64 (115)
+..|..+.+-||+|+|||.
T Consensus 364 i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCChHHH
Confidence 3457889999999999995
No 433
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.98 E-value=1.6 Score=35.22 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=15.3
Q ss_pred cCCcEEEecCCCCCchHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLI 67 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L 67 (115)
.+..++|.||+|+|||.-.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567899999999995433
No 434
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=75.92 E-value=1.1 Score=35.28 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=18.3
Q ss_pred hcCCcEEEecCCCCCchHHHHHHHH
Q psy14273 47 DNSKFGIFESPTGTGKSLSLICGIL 71 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L~~al 71 (115)
..|..+.|.||+|+|||.-.+.-+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999965444433
No 435
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=75.92 E-value=2.4 Score=34.70 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=13.2
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+.|-||+|+|||.-
T Consensus 71 ~valvG~nGaGKSTL 85 (413)
T 1tq4_A 71 NVAVTGETGSGKSSF 85 (413)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 888999999999953
No 436
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=75.87 E-value=0.94 Score=35.33 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=14.2
Q ss_pred cCCcEEEecCCCCCchHH
Q psy14273 48 NSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls 65 (115)
.+..+.|-||+|+|||.-
T Consensus 89 ~g~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT 106 (312)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCchHHHH
Confidence 345677899999999853
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=75.87 E-value=0.93 Score=33.86 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.1
Q ss_pred CCcEEEecCCCCCchH
Q psy14273 49 SKFGIFESPTGTGKSL 64 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTl 64 (115)
.+.++|-||.|+||+.
T Consensus 29 ~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGT 44 (217)
T ss_dssp CEEEEEECCTTCCHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3567889999999964
No 438
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=75.80 E-value=1.1 Score=36.08 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.5
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 38 i~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCcHHHH
Confidence 34678889999999999954
No 439
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=75.51 E-value=1.1 Score=35.94 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=15.9
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.+-||+|+|||.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEEcCCCchHHHH
Confidence 4577888999999999954
No 440
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.45 E-value=0.97 Score=37.81 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCcEEEecCCCCCchH
Q psy14273 38 FMKNLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 38 ~m~~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
.++.+.=.+..|..+.+-||+|+|||.
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKST 384 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKST 384 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHH
Confidence 444554455678899999999999984
No 441
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.32 E-value=1.3 Score=35.98 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=17.0
Q ss_pred cCCcEEEecCCCCCchHHHHH
Q psy14273 48 NSKFGIFESPTGTGKSLSLIC 68 (115)
Q Consensus 48 ~~~~~iiEaPTGtGKTls~L~ 68 (115)
.|..++|.||+|+|||.-.+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 457899999999999966553
No 442
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=75.30 E-value=1.1 Score=35.95 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.+-||+|+|||.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCchHHHH
Confidence 4577888999999999954
No 443
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.28 E-value=0.7 Score=36.26 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.5
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34578899999999999953
No 444
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=75.08 E-value=1.1 Score=35.97 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTL 45 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTT 45 (372)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCcHHHHH
Confidence 4577889999999999964
No 445
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=74.78 E-value=1 Score=33.79 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+.+-||+|+|||.-
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 6778899999999953
No 446
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=74.59 E-value=1.2 Score=35.92 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 35 ~~Ge~~~llGpnGsGKSTL 53 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTT 53 (372)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 4577888999999999954
No 447
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=74.46 E-value=0.93 Score=37.93 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.4
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.+-||+|+|||.-
T Consensus 366 i~~G~~~~ivG~sGsGKSTL 385 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTI 385 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578899999999999953
No 448
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=74.32 E-value=1.5 Score=35.61 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.8
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.|-||+|+|||.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCChHHHH
Confidence 45678899999999999964
No 449
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=74.22 E-value=1.1 Score=37.80 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.4
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.+-||+|+|||.-
T Consensus 378 i~~G~~~~ivG~sGsGKSTl 397 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTI 397 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34578899999999999953
No 450
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.22 E-value=2.1 Score=33.01 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=23.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..+|+.+..|+|||.....-|+.++.. +++|
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rV 45 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS-GKKT 45 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC-CCcE
Confidence 467789999999998877777666654 5554
No 451
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=73.78 E-value=1.4 Score=32.37 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=12.0
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+||-||+|+||+.
T Consensus 2 ~Iil~GpPGsGKgT 15 (206)
T 3sr0_A 2 ILVFLGPPGAGKGT 15 (206)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999974
No 452
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=73.74 E-value=1.1 Score=37.59 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.3
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.+-||+|+|||.-
T Consensus 367 i~~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578899999999999953
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.46 E-value=2.2 Score=35.13 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=19.2
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+++.+|+|+|||.....-+..+ ...+.+|
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l-~~~g~~V 129 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYY-KGKGRRP 129 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HTTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHcCCeE
Confidence 46677999999997655544333 3334443
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=73.35 E-value=1.5 Score=36.19 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=18.0
Q ss_pred HHHHHhcCCcEEEecCCCCCchH
Q psy14273 42 LYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 42 I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
+.-.+..|..+.|-||+|+|||.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKST 153 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTS 153 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHH
Confidence 33345578899999999999985
No 455
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=73.22 E-value=1.8 Score=35.24 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 27 ~~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEEcCCCchHHHH
Confidence 4577889999999999954
No 456
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=73.16 E-value=0.52 Score=36.86 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=16.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
..+|.||+|+|||.- +=+|.++.
T Consensus 62 ~~~lvG~NGaGKStL--l~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSII--VDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHH--THHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHh
Confidence 788999999999953 44454443
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.05 E-value=1.5 Score=30.35 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.7
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+.|.|+.|+|||..
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999853
No 458
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=73.05 E-value=1.7 Score=35.06 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.8
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.|-||+|+|||.-
T Consensus 28 ~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 4577888999999999853
No 459
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=72.65 E-value=2.5 Score=31.54 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=22.1
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSD 76 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~ 76 (115)
++..++.||.|+|||.-+|-.+-.+...
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5688999999999997777766666544
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=72.60 E-value=3 Score=30.87 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHhcC---CcEEEecCCCCCchH
Q psy14273 31 AYDIQSNFMKNLYYTLDNS---KFGIFESPTGTGKSL 64 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~---~~~iiEaPTGtGKTl 64 (115)
|...|..+.+.+.+....+ ..+++-|.+|+|||.
T Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSS 54 (270)
T 1h65_A 18 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSS 54 (270)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHH
Confidence 3344455444444444433 368899999999994
No 461
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=72.52 E-value=3.7 Score=33.36 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=16.0
Q ss_pred HHhcCCc--EEEecCCCCCchHH
Q psy14273 45 TLDNSKF--GIFESPTGTGKSLS 65 (115)
Q Consensus 45 ~l~~~~~--~iiEaPTGtGKTls 65 (115)
.+..+.. ++|.||.|+|||..
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl 40 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTI 40 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHH
Confidence 3345554 88999999999964
No 462
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=72.32 E-value=2.5 Score=35.12 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=24.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 49 SKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
...+++.+.+|+|||...+.-++.++.. ++++
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~-G~rV 39 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ-GKRV 39 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC-CCcE
Confidence 3578889999999998877777777654 5554
No 463
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=72.15 E-value=1.2 Score=37.42 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.4
Q ss_pred HhcCCcEEEecCCCCCchHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls 65 (115)
+..|..+.+-||+|+|||.-
T Consensus 366 i~~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578899999999999953
No 464
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=72.12 E-value=3.1 Score=31.90 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCcEEEecCCCCCchH
Q psy14273 40 KNLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 40 ~~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
+.+...+ .+....+-||+|+|||.
T Consensus 157 ~~L~~~l-~G~i~~l~G~sG~GKST 180 (302)
T 2yv5_A 157 DELVDYL-EGFICILAGPSGVGKSS 180 (302)
T ss_dssp HHHHHHT-TTCEEEEECSTTSSHHH
T ss_pred HHHHhhc-cCcEEEEECCCCCCHHH
Confidence 3444444 46778889999999984
No 465
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.71 E-value=1.6 Score=33.00 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.9
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.++|.|+.|+|||..
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999853
No 466
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=71.68 E-value=2 Score=30.32 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.1
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..++|.++.|+|||..
T Consensus 3 ~~~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 3 AINIALDGPAAAGKSTI 19 (219)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999964
No 467
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=71.67 E-value=1.8 Score=37.90 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEecCCCCCchHHHHHHHHHHHH
Q psy14273 31 AYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYS 75 (115)
Q Consensus 31 ~r~~Q~e~m~~I~~~l~~~~~~iiEaPTGtGKTls~L~~al~~l~ 75 (115)
+...|.+.++.+.++. ....|+.|+-|.||| +++-.++..+.
T Consensus 176 ~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKS-a~lG~~~a~~~ 217 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMP--PGVAAVTAARGRGKS-ALAGQLISRIA 217 (671)
T ss_dssp CCHHHHHHHHHHTTCC--SEEEEEEECTTSSHH-HHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhh--hCeEEEecCCCCCHH-HHHHHHHHHHH
Confidence 6678999887776554 356899999999999 44444555553
No 468
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=71.66 E-value=0.97 Score=36.14 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.+-||+|+|||.-
T Consensus 24 ~~Ge~~~llGpnGsGKSTL 42 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLF 42 (348)
T ss_dssp CTTCEEEEECCCTHHHHHH
T ss_pred cCCCEEEEECCCCccHHHH
Confidence 4577888999999999954
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=71.55 E-value=2.3 Score=30.82 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.1
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
+..+.|.|+.|+|||..
T Consensus 16 ~~~i~i~G~~gsGKst~ 32 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTV 32 (236)
T ss_dssp CCEEEEECSSCSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45788999999999864
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=71.45 E-value=1.7 Score=28.30 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=12.0
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 3 ki~v~G~~~~GKSs 16 (161)
T 2dyk_A 3 KVVIVGRPNVGKSS 16 (161)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47888999999994
No 471
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.34 E-value=2.7 Score=35.28 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=18.2
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIA 80 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~ 80 (115)
.++|.|++|+|||.....-+ .++...+.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~~G~k 131 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQRKGWK 131 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhCCCe
Confidence 46778999999997543333 333343444
No 472
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.33 E-value=1.7 Score=31.91 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=12.7
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+.|.||.|||||..
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999953
No 473
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=71.19 E-value=2.6 Score=32.96 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=23.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..+|+.+..|+|||.....-|+.++.. +++|
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rV 57 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEK-GLKV 57 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHS-SCCE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHC-CCeE
Confidence 357788999999998877776666654 5555
No 474
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.11 E-value=2.2 Score=41.83 Aligned_cols=27 Identities=19% Similarity=0.168 Sum_probs=20.3
Q ss_pred HhcCCcEEEecCCCCCchHHHHHHHHH
Q psy14273 46 LDNSKFGIFESPTGTGKSLSLICGILK 72 (115)
Q Consensus 46 l~~~~~~iiEaPTGtGKTls~L~~al~ 72 (115)
+..+..++|.+|+|||||.-.+.-+..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999999765554443
No 475
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=71.07 E-value=2.5 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=19.9
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 52 GIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 52 ~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
+|..+-.|+|||...+.-+..++. .+.+|
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~-~g~~v 33 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSR-SGYNI 33 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHH-CCCeE
Confidence 455677889999877666666664 45554
No 476
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=70.44 E-value=5.7 Score=29.91 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=20.7
Q ss_pred CcEEEecC-CCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 50 KFGIFESP-TGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 50 ~~~iiEaP-TGtGKTls~L~~al~~l~~~~~~v 81 (115)
+.++|.++ .|.|||...+.-|..+++ .+++|
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rV 114 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKT 114 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeE
Confidence 45556655 789999887766666664 45555
No 477
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=70.31 E-value=4 Score=31.13 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=16.7
Q ss_pred HHHHHHhcCCcEEEecCCCCCchH
Q psy14273 41 NLYYTLDNSKFGIFESPTGTGKSL 64 (115)
Q Consensus 41 ~I~~~l~~~~~~iiEaPTGtGKTl 64 (115)
.+...+ .+..+.+-||+|+|||.
T Consensus 162 ~lf~~l-~geiv~l~G~sG~GKST 184 (301)
T 1u0l_A 162 ELKEYL-KGKISTMAGLSGVGKSS 184 (301)
T ss_dssp HHHHHH-SSSEEEEECSTTSSHHH
T ss_pred HHHHHh-cCCeEEEECCCCCcHHH
Confidence 343333 46788899999999983
No 478
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=70.09 E-value=6.2 Score=29.18 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=24.9
Q ss_pred HHHHHHHHHhc-CCcEEEe---cCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 38 FMKNLYYTLDN-SKFGIFE---SPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 38 ~m~~I~~~l~~-~~~~iiE---aPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+..+.+.+.+ ++.++|- +..|+|||.....-|..++ ..+.+|
T Consensus 22 ~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la-~~G~rV 68 (298)
T 2oze_A 22 ILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTD-KLNLKV 68 (298)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHH-HTTCCE
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHH-hCCCeE
Confidence 33444444443 3444444 4899999987666655444 445555
No 479
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=70.09 E-value=2.7 Score=29.86 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=20.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
.+|..+-.|+|||...+.-+..++...+++|
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~V 37 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHV 37 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCE
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCE
Confidence 3456677899999876666666655435555
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=69.99 E-value=1.6 Score=33.47 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.2
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+.|.||.|+|||..
T Consensus 6 ~iIgItG~sGSGKSTv 21 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTV 21 (290)
T ss_dssp CEEEEESCC---CCTH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4677899999999853
No 481
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=69.84 E-value=1.7 Score=28.02 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=12.0
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (166)
T 2ce2_X 5 KLVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47888999999994
No 482
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=69.76 E-value=2 Score=35.52 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCc--EEEecCCCCCchH
Q psy14273 39 MKNLYYTLDNSKF--GIFESPTGTGKSL 64 (115)
Q Consensus 39 m~~I~~~l~~~~~--~iiEaPTGtGKTl 64 (115)
+..|.-.+..|.. +.|-||+|+|||.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKST 57 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKST 57 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHH
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHH
Confidence 4456666778887 8899999999985
No 483
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.61 E-value=1.9 Score=30.08 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.3
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
..+++-|++|+|||.
T Consensus 13 ~~i~~~G~~g~GKTs 27 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTS 27 (218)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 578999999999994
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=69.58 E-value=2 Score=28.10 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=12.2
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 7 ~i~v~G~~~~GKss 20 (168)
T 1z2a_A 7 KMVVVGNGAVGKSS 20 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57889999999994
No 485
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=69.46 E-value=3.3 Score=32.82 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=23.6
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHH-hhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYS-DHKIAG 81 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~-~~~~~v 81 (115)
+.+++.+..|+|||.....-|..++. ..+++|
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~v 51 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQF 51 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeE
Confidence 57888999999999887666666663 445555
No 486
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=69.44 E-value=1.9 Score=28.51 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.8
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
..+++-|++|+|||.
T Consensus 9 ~~i~v~G~~~~GKSs 23 (182)
T 1ky3_A 9 LKVIILGDSGVGKTS 23 (182)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 358889999999994
No 487
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=69.28 E-value=2 Score=29.22 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.0
Q ss_pred CcEEEecCCCCCchH
Q psy14273 50 KFGIFESPTGTGKSL 64 (115)
Q Consensus 50 ~~~iiEaPTGtGKTl 64 (115)
..+++-|++|+|||.
T Consensus 49 ~~i~vvG~~g~GKSs 63 (193)
T 2ged_A 49 PSIIIAGPQNSGKTS 63 (193)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468899999999993
No 488
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=68.53 E-value=1.6 Score=34.90 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=16.4
Q ss_pred cEEEecCCCCCchHHHHHHHHHHH
Q psy14273 51 FGIFESPTGTGKSLSLICGILKWY 74 (115)
Q Consensus 51 ~~iiEaPTGtGKTls~L~~al~~l 74 (115)
..+|-||+|+|||.. +=++.++
T Consensus 28 ~~~i~G~nG~GKttl--l~ai~~~ 49 (359)
T 2o5v_A 28 VTGIYGENGAGKTNL--LEAAYLA 49 (359)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHH
T ss_pred eEEEECCCCCChhHH--HHHHHHh
Confidence 788999999999964 3344444
No 489
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=68.52 E-value=2.1 Score=29.67 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=12.2
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 7 kv~lvG~~g~GKST 20 (199)
T 2f9l_A 7 KVVLIGDSGVGKSN 20 (199)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47889999999994
No 490
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=68.50 E-value=7.9 Score=29.54 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=20.8
Q ss_pred CcEEEecC-CCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 50 KFGIFESP-TGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 50 ~~~iiEaP-TGtGKTls~L~~al~~l~~~~~~v 81 (115)
+.++|.++ .|.|||...+.-|..++.. +++|
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rV 136 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS-DQKV 136 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT-TCCE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC-CCcE
Confidence 45556665 7999998777666666643 5554
No 491
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=68.46 E-value=2.1 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.245 Sum_probs=12.2
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 8 ~i~v~G~~~~GKSs 21 (170)
T 1z0j_A 8 KVCLLGDTGVGKSS 21 (170)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 57889999999994
No 492
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=68.15 E-value=2.7 Score=31.68 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=14.2
Q ss_pred CCcEEEecCCCCCchHH
Q psy14273 49 SKFGIFESPTGTGKSLS 65 (115)
Q Consensus 49 ~~~~iiEaPTGtGKTls 65 (115)
...+.|.||+|+|||..
T Consensus 9 ~~~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSV 25 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999953
No 493
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.92 E-value=2.2 Score=27.79 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=12.1
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1ek0_A 5 KLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999994
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.63 E-value=2.6 Score=30.43 Aligned_cols=15 Identities=33% Similarity=0.204 Sum_probs=12.5
Q ss_pred cEEEecCCCCCchHH
Q psy14273 51 FGIFESPTGTGKSLS 65 (115)
Q Consensus 51 ~~iiEaPTGtGKTls 65 (115)
.+.+.|+.|||||..
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999854
No 495
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=67.60 E-value=1 Score=35.97 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.0
Q ss_pred hcCCcEEEecCCCCCchHH
Q psy14273 47 DNSKFGIFESPTGTGKSLS 65 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls 65 (115)
..|..+.+-||+|+|||.-
T Consensus 29 ~~Ge~~~llGpnGsGKSTL 47 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTF 47 (353)
T ss_dssp CTTCEEEEECSCHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 4577888999999999954
No 496
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=67.60 E-value=2.3 Score=27.58 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=12.2
Q ss_pred cEEEecCCCCCchH
Q psy14273 51 FGIFESPTGTGKSL 64 (115)
Q Consensus 51 ~~iiEaPTGtGKTl 64 (115)
.+++-|++|+|||.
T Consensus 5 ~i~v~G~~~~GKSs 18 (167)
T 1kao_A 5 KVVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999994
No 497
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=67.51 E-value=2.3 Score=35.02 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.3
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
..+.|.|+.|+|||.-
T Consensus 153 ~vv~I~G~gGvGKTtL 168 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVI 168 (549)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4677899999999953
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.51 E-value=2.1 Score=32.96 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=13.4
Q ss_pred CcEEEecCCCCCchHH
Q psy14273 50 KFGIFESPTGTGKSLS 65 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls 65 (115)
+..+|.|+.|+|||..
T Consensus 5 ~v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEEESSSSSCHHH
T ss_pred cEEEEEecCCCCHHHH
Confidence 3578899999999964
No 499
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=67.36 E-value=3.7 Score=32.38 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=23.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHHH-hhhhhh
Q psy14273 50 KFGIFESPTGTGKSLSLICGILKWYS-DHKIAG 81 (115)
Q Consensus 50 ~~~iiEaPTGtGKTls~L~~al~~l~-~~~~~v 81 (115)
..+|+.+-.|.|||.....-|+.++. ..+++|
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rV 51 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQF 51 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeE
Confidence 46778899999999887777777763 345555
No 500
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=67.32 E-value=3.9 Score=31.19 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=24.2
Q ss_pred hcCCcEEEecCCCCCchHHHHHHHHHHHHhhhhhh
Q psy14273 47 DNSKFGIFESPTGTGKSLSLICGILKWYSDHKIAG 81 (115)
Q Consensus 47 ~~~~~~iiEaPTGtGKTls~L~~al~~l~~~~~~v 81 (115)
..|...++.||-|+|||..+|--+..+... +.++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kv 59 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA-KQKV 59 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCce
Confidence 457888999999999997777666555544 4443
Done!