RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14273
(115 letters)
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.3 bits (59), Expect = 0.30
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 46 LDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78
L + + G GK+ + IL + +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR 36
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 26.0 bits (56), Expect = 0.79
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 52 GIFESPTGTGKSLSLICGILKW 73
+PTG+GKS +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQ 32
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.4 bits (57), Expect = 0.91
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 46 LDNSKFGIFESPTGTGKSLSLICGILK 72
+ I + G GK+ + I++
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 25.2 bits (54), Expect = 2.2
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 11 EFKEQRPLAEVPSEFPFPFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSL 64
EF + F D Q + K G PTG+GK+
Sbjct: 51 EFVDNAADPIPTPYFDAEISLRDYQ----EKALERWLVDKRGCIVLPTGSGKTH 100
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 24.1 bits (52), Expect = 4.2
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 50 KFGIFESPTGTGKSLSLICGILKWYSDHKIAGLEKIEAEIKDLE 93
KF + + T + G+ + I G + I + E
Sbjct: 15 KFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYE 58
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum
[TaxId: 1521]}
Length = 380
Score = 24.5 bits (52), Expect = 4.7
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 29 FDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYS 75
A I N ++ FG F+ + K +I G++K+
Sbjct: 330 AKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAF 376
>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 23.3 bits (50), Expect = 6.0
Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 66 LICGILKWYSDHKIAGLEKIEAEIKDL 92
G ++ + ++ E I A++
Sbjct: 68 SFGGCHRYAA-YQQLQRETIPAKLVQS 93
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 206
Score = 23.8 bits (51), Expect = 6.1
Identities = 3/48 (6%), Positives = 17/48 (35%)
Query: 64 LSLICGILKWYSDHKIAGLEKIEAEIKDLEISKNETVSEDWIEQQSFE 111
+ + + + G ++ + ++ + +++ W + E
Sbjct: 137 VGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEE 184
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus
subtilis [TaxId: 1423]}
Length = 377
Score = 23.8 bits (50), Expect = 6.5
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78
D +I + L + K +P G G++ I L ++ ++
Sbjct: 319 GTDEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYR 369
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 23.7 bits (50), Expect = 8.2
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 79 IAGLEKIEAEIKDLEISKNETVSED---WIEQQ 108
L + +++ E+ +ED W+E +
Sbjct: 57 EEALNVLLEDVRARPQQILESDAEDIHSWVEGK 89
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 23.7 bits (51), Expect = 8.5
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 89 IKDLEISKNETVSEDWIEQQSFEPTI 114
+DL + + + +E ++ + T+
Sbjct: 3 FRDLSHNCRPSEAPRVMEPKNRDRTV 28
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus
thermophilus [TaxId: 274]}
Length = 373
Score = 23.4 bits (49), Expect = 9.3
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 28 PFDAYDIQSNFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWY 74
D + L + S+ ++P G GK+ ++ + W
Sbjct: 315 GTDPEGVYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWR 361
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 23.4 bits (49), Expect = 9.8
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 37 NFMKNLYYTLDNSKFGIFESPTGTGKSLSLICGILKWYSDHK 78
++M+ + G GK+L I +++
Sbjct: 22 SWMRFMN---KLGFGICLADDMGLGKTLQTIAVFSDAKKENE 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.387
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,101
Number of extensions: 18486
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 23
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)