RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14276
(256 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 108 bits (272), Expect = 4e-27
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 130 ILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAP 189
+ D IP ++IPKG LV + YAL D ++ +P EF+P+RF EN ++ P
Sbjct: 345 VTKDTVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLP 402
Query: 190 FGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEG 243
FG GPR C+G+R ++MKL L+ +L N+ V ++ +T LL P+
Sbjct: 403 FGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPPKP 456
Score = 46.9 bits (112), Expect = 5e-06
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 12 HLYRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRG----FHVGPN 67
H + + F + +G P +++ P V +VLIK F R F
Sbjct: 23 HSVFTKLQKKYGPI--FRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRG 80
Query: 68 DYLGNNLFFMRNPQWKAARAKMVTVFST---AKMKATFEIVGRI 108
+LG + F P+W+ R + F++ + E R
Sbjct: 81 PFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARD 124
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 73.6 bits (181), Expect = 5e-15
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 123 ASVRYFGILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKI 182
V + + + IP G +V + A D ++ DP EF+P+RF
Sbjct: 294 PPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERF-------- 345
Query: 183 VPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYR 219
++ PFG GP C+G L++K+ L+++L +
Sbjct: 346 -NNAHLPFGGGPHRCLGAALARLELKVALAELLRRFP 381
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 68.7 bits (168), Expect = 3e-13
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 143 IPKGVLVHIPTYALQTDAALW-SDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGKR 201
IPKG+ + IP A+ LW D EFNPDRFA + PF GPR CIG+
Sbjct: 409 IPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFA--GRPFAPGRHFIPFAAGPRNCIGQA 466
Query: 202 FGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL 237
F ++ K++L+ ++ + T S + R P+ T+
Sbjct: 467 FAMMEAKIILAMLISKFSFT-ISDNYRHAPVVVLTI 501
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 62.0 bits (151), Expect = 4e-11
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 136 IPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPR 195
I H IPK + I Y+L + + +P +F+P RF +S ++ PF GPR
Sbjct: 372 IIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFL-NPDS---NDAFMPFSIGPR 427
Query: 196 ICIGKRFGFLQMKLVLSKVLLNYRVT 221
C+G++F ++ L S ++LN+++
Sbjct: 428 NCVGQQFAQDELYLAFSNIILNFKLK 453
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 56.7 bits (137), Expect = 2e-09
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAP--ENESKIVPGS---YAPFGDGPRIC 197
IPKG + + +A+ D W DPLEF PDRF P E+ V GS PFG G RIC
Sbjct: 392 IPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRIC 451
Query: 198 IGKRFGFLQMKLVLSKVLL 216
G +G L+M +L+ L+
Sbjct: 452 AGLSWG-LRMVTLLTATLV 469
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 56.4 bits (136), Expect = 4e-09
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPG----SYAPFGDGPRICI 198
IPK + + +A+ D +W +P EF P+RF E +KI P PFG G RIC
Sbjct: 384 IPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICA 443
Query: 199 GKRFGFLQMKLVL 211
G R G + ++ +L
Sbjct: 444 GTRMGIVLVEYIL 456
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 55.9 bits (135), Expect = 4e-09
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ IPKG V + D ++ +P EF+P R+ K G++ PFG G R+C G
Sbjct: 383 YTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWD-NYTPK--AGTFLPFGLGSRLCPGN 439
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCS-KSERRY 230
L++ + L LL YR+ + + Y
Sbjct: 440 DLAKLEISIFLHHFLLGYRLERLNPGCKVMY 470
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 54.5 bits (131), Expect = 1e-08
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 125 VRYFGILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVP 184
VRY G Y IP V+P VH+ D++L+ P FNP R+ N
Sbjct: 371 VRYKG----YDIPSGWKVLPVIAAVHL-------DSSLYDQPQLFNPWRWQQNNNRGGSS 419
Query: 185 GS-------YAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYR 219
GS + PFG GPR+C G L+M + + ++LN+
Sbjct: 420 GSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFN 461
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 53.2 bits (128), Expect = 4e-08
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 129 GILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALW-SDPLEFNPDRFAPE----NESKIV 183
GIL D +PD + G +V Y++ W D F P+R+ + N S
Sbjct: 394 GILEDDVLPDGT-KVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNAS--- 449
Query: 184 PGSYAPFGDGPRICIGKRFGFLQMKLVLS 212
P + F GPRIC+GK +LQMK+ L+
Sbjct: 450 PFKFTAFQAGPRICLGKDSAYLQMKMALA 478
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 49.2 bits (117), Expect = 8e-07
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGS-YAPFGDGPRICIG 199
+ IPKG V A+ D + D FNP R+ N VP + + PFG GPR+C G
Sbjct: 362 YTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQ-SNSGTTVPSNVFTPFGGGPRLCPG 420
Query: 200 KRFGFLQMKLVLSKVLLNYRVTPC----------SKSERRYPIKTQ 235
+ + + L +++ + P +++++RYPI +
Sbjct: 421 YELARVALSVFLHRLVTRFSWVPAEQDKLVFFPTTRTQKRYPINVK 466
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 49.2 bits (117), Expect = 8e-07
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 136 IPDSRHVIPKGVLVHIPTYALQTDAALW-SDPLEFNPDRFAPENESKIVPGSY--APFGD 192
+P V + +V I YAL ++W D L+F P+R+ +N SY F
Sbjct: 384 LPSGHKVDAESKIV-ICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNS 442
Query: 193 GPRICIGKRFGFLQMKLVLSKVLLNY 218
GPR C+GK LQMK+V +++ NY
Sbjct: 443 GPRTCLGKHLALLQMKIVALEIIKNY 468
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 47.6 bits (113), Expect = 3e-06
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAP--ENESKIVPGSYA----PFGDGP 194
++IPKG V+ + D W P+EF P+RF + E V GS PFG G
Sbjct: 400 YLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGR 459
Query: 195 RICIG 199
RIC G
Sbjct: 460 RICAG 464
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 47.4 bits (112), Expect = 3e-06
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 143 IPKGVLVHIPTYALQTDAALWS-DPLEFNPDRF-APENESKIVPGSYAPFGDGPRICIGK 200
IP G V++ +A+ D W +P EF P+RF E + K + PFG G R+C G
Sbjct: 386 IPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGM 445
Query: 201 RFGFLQMKLVLSKVLLNY 218
R G +++ + +LLN+
Sbjct: 446 RLGAAMLEVPYANLLLNF 463
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 46.6 bits (111), Expect = 5e-06
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 133 DYAIPDSRHVIPKGVLVHIPTYALQTDAALW-SDPLEFNPDR------FAPENESKIVPG 185
D +PD V KG V YA+ +W D LEF P+R F PEN K
Sbjct: 380 DDVLPDGTFV-AKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFK---- 434
Query: 186 SYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRV 220
Y F G R+C+GK ++MK V V+ + +
Sbjct: 435 -YPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDI 468
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 46.7 bits (111), Expect = 5e-06
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 140 RHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPEN-ESKIVPGSYAPFGDGPRICI 198
+VIPKG +++ T + D L+ DP+ FNP R+ ++ ES + FG G R+C
Sbjct: 358 GYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLESH---NYFFLFGGGTRLCP 414
Query: 199 GKRFGFLQMKLVLSKVLLNYR 219
GK G +++ L + YR
Sbjct: 415 GKELGIVEISTFLHYFVTRYR 435
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 45.5 bits (108), Expect = 1e-05
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
++IPKG V ++ D + +P +FNP R+ E + S+ PFG G R+C G
Sbjct: 347 YLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRW---QEKDMNNSSFTPFGGGQRLCPGL 403
Query: 201 RFGFLQMKLVLSKVLLNYRVT---------PCSKSERRYPIKTQTL 237
L+ + L ++ +R P + +R+ PI +
Sbjct: 404 DLARLEASIFLHHLVTRFRWVAEEDTIVNFPTVRMKRKLPIWVTRI 449
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 45.6 bits (108), Expect = 1e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPE----NESKIVPGSYAPFGDGPRI 196
+ + G + I Y + +W EF P+RF + NE+ Y PF GPR
Sbjct: 370 YKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETN-TDFRYIPFSGGPRK 428
Query: 197 CIGKRFGFLQMKLVLSKVL--LNYRVTP 222
C+G +F L+ + L+ +L L+ + P
Sbjct: 429 CVGDQFALLEAIVALAVLLQRLDLELVP 456
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 45.3 bits (107), Expect = 2e-05
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRF---APENESKIVPGSYAPFGDGPRICIG 199
I +G + I + L W D +FNP+R+ P SY PFG GPR C+G
Sbjct: 484 IKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVG 543
Query: 200 KRF 202
F
Sbjct: 544 DMF 546
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 45.2 bits (107), Expect = 2e-05
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYA-----PFGDGPRIC 197
IP V I T+ L + +W D EF P+R P S++ PF G R C
Sbjct: 391 IPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKC 450
Query: 198 IGKRFGFLQMKLVLSKVL 215
G G + + L+++
Sbjct: 451 PGAPLGVTMVLMALARLF 468
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 44.1 bits (104), Expect = 4e-05
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRF----APENESKIVPGS---YAPFGDGPR 195
IPK V I +A+ D W DP F P RF P+ GS + PFG G R
Sbjct: 398 IPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPD-----FKGSHFEFIPFGSGRR 452
Query: 196 ICIGKRFGFLQMKLVLSKVL 215
C G + G + L ++ +L
Sbjct: 453 SCPGMQLGLYALDLAVAHLL 472
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 44.0 bits (104), Expect = 4e-05
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
IP G + I Y D W +P E++P+RF E FG G R+C G
Sbjct: 356 IPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAG 412
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 43.1 bits (101), Expect = 7e-05
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 143 IPKGVLVHIPTYALQTDAALWSD-PLEFNPDRFAPENESKIVPGS---YAPFGDGPRICI 198
IP ++ + +A+ D A W D P EF P+RF E++ G PFG G R+C
Sbjct: 383 IPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCP 442
Query: 199 GKRFGFLQMKLVLSKVLLNY 218
G +++ + +L +
Sbjct: 443 AMHLGIAMVEIPFANLLYKF 462
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 42.2 bits (99), Expect = 2e-04
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 141 HVIPKGVLVHIPTYA-LQTDAALWSDPLEFNPDRF--APENESKIVPGSYAPFGDGPRIC 197
++IPKG V +P + + A ++SDP +F+P RF AP+ P ++ PFG+G C
Sbjct: 359 YLIPKGWKV-LPLFRNIHHSADIFSDPGKFDPSRFEVAPK------PNTFMPFGNGTHSC 411
Query: 198 IGKRFGFLQMKLVLSKVLLNYRVT 221
G L++ +++ + YR +
Sbjct: 412 PGNELAKLEISVLIHHLTTKYRWS 435
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 41.9 bits (98), Expect = 2e-04
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRF----APENESKIVPGS--YAPFGDGP 194
+ IPKG +H+ L + +W DPL + P+R E +V + F G
Sbjct: 407 YFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGR 466
Query: 195 RICIGKRFGFLQMKLVLSKVLLNY 218
R C+G + G + M ++L++ L +
Sbjct: 467 RGCVGVKVGTIMMVMMLARFLQGF 490
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 40.5 bits (95), Expect = 6e-04
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPEN---ESKIVPGSYAPFGDGPRICIG 199
IP + + + L + LW +P EF P+RF E E+ + PFG G R C G
Sbjct: 388 IPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPG 447
Query: 200 KRFGFLQMKLVLSKVLLNYRVTP 222
+ +VL +++ N+ + P
Sbjct: 448 IILALPILGIVLGRLVQNFELLP 470
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 39.3 bits (91), Expect = 0.001
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPE-NESKIVPGS--YAPFGDGPRICIG 199
IPKG V + Y L + +WSDPL F P+R E +E + + F G R C
Sbjct: 422 IPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAA 481
Query: 200 KRFGFLQMKLVLSKVLLNYR 219
G ++L+++L ++
Sbjct: 482 PALGTAITTMMLARLLQGFK 501
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 29.6 bits (66), Expect = 1.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 172 DRFAPENESKIVPGSYAPFG 191
D+FAP+ SKIVP S P G
Sbjct: 350 DKFAPDANSKIVPASAIPDG 369
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 29.2 bits (65), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 172 DRFAPENESKIVPGSYAPFG 191
D+FAP+ SK+VP S P G
Sbjct: 275 DKFAPDANSKVVPASAIPDG 294
>gnl|CDD|237143 PRK12576, PRK12576, succinate dehydrogenase iron-sulfur subunit;
Provisional.
Length = 279
Score = 28.2 bits (63), Expect = 4.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 46 VVKVLIKDFSHFYDRGFHVGP 66
VVK LI DF FY+R F V P
Sbjct: 103 VVKDLIVDFDEFYERMFKVKP 123
>gnl|CDD|107069 PHA01756, PHA01756, hypothetical protein.
Length = 268
Score = 27.6 bits (61), Expect = 5.4
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 22 PASVRYFGILIGTCPTLIIKDPTL-VVKVLIKDFSHF--------YDRGFHVGPNDYLGN 72
P ++ I + T P+ I TL V++++++ S++ Y+ F + P D L
Sbjct: 184 PPTIEGLQISLSTSPSPIYSGSTLETVRIILQNLSNYIVYIGNSLYN-SFPILPGDSLE- 241
Query: 73 NLFFMRNPQ----WKAARAKMVTVFSTAK 97
F +RNP W + + +F +
Sbjct: 242 --FHVRNPSNVYAWATGKCTVYALFEVVQ 268
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 27.4 bits (62), Expect = 8.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 60 RGFHVGPNDYLG---NNLFFMRNPQWK--AARAK-MVT 91
G + PN YL LF R P W+ A K +V+
Sbjct: 313 PGGLMNPNHYLAVAIAYLFHHR-PGWRAGAGVGKTLVS 349
>gnl|CDD|234934 PRK01286, PRK01286, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 336
Score = 27.1 bits (61), Expect = 9.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 224 SKSERRYPIKTQTLLAAPEGDH 245
SK+ RR KTQ + PEGDH
Sbjct: 39 SKAFRRLKHKTQVFIN-PEGDH 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.456
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,582,777
Number of extensions: 1294743
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 36
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)