RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14276
(256 letters)
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 157 bits (400), Expect = 2e-45
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 133 DYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGD 192
D I IPKGV+V IP+YAL D W++P +F P+RF+ +N+ I P Y PFG
Sbjct: 358 DVEING--MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGS 415
Query: 193 GPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
GPR CIG RF + MKL L +VL N+ PC +++ + LL PE LK
Sbjct: 416 GPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLL-QPEKPVVLKVES 473
Score = 96.9 bits (242), Expect = 3e-23
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 2 TFSMGRICQTHLYRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKD-FSHFYDR 60
+ + ++ + +G G P L I DP ++ VL+K+ +S F +R
Sbjct: 27 NILSYHKGFCMFDMECHKKYG---KVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNR 83
Query: 61 GFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQ 110
GP ++ + + + +WK R+ + F++ K+K I+ +
Sbjct: 84 RPF-GPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGD 132
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 121 bits (304), Expect = 7e-32
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 133 DYAIP--DSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPF 190
D I D+ + G +++ D ++ EF P+RF E K++
Sbjct: 371 DLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSN 430
Query: 191 G-------DGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSE 227
G G + C GK F L +L + ++ Y
Sbjct: 431 GPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDSFDIEVGT 474
Score = 34.1 bits (78), Expect = 0.037
Identities = 9/113 (7%), Positives = 28/113 (24%), Gaps = 16/113 (14%)
Query: 14 YRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDYLGNN 73
++ ++ ++V + + + I ++P +V + K F +D + G
Sbjct: 58 FKSRIRKYNSTV--YRVNMPPGA-FIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTY 114
Query: 74 LFFMRNP-------------QWKAARAKMVTVFSTAKMKATFEIVGRICQAHL 113
+ ++ + F
Sbjct: 115 MPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELF 167
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 119 bits (300), Expect = 3e-31
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+P + TY + + DPL FNPDRF P +Y PF G R CIG+
Sbjct: 335 VRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA--PKPRFTYFPFSLGHRSCIGQ 392
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
+F +++K+V++K+L +R+ ++ Q L P
Sbjct: 393 QFAQMEVKVVMAKLLQRLEFRLV--PGQRFGLQEQATL-KPLDPVLCTLRP 440
Score = 36.8 bits (86), Expect = 0.006
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 12 HLYRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIK----DFSHFYDRGFHVGPN 67
++ D ++ VR + ++I+ P V K L+ S Y V
Sbjct: 14 DVFLDWAKKYGPVVRVN---VFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGE 70
Query: 68 DYLGNNLFFMRN-PQWKAARAKMVT-VFSTAKMKATFEIVGRICQ 110
G L N +W R +++ FS + + + E +
Sbjct: 71 RLFGQGLVSECNYERWHKQR-RVIDLAFSRSSLVSLMETFNEKAE 114
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 116 bits (293), Expect = 2e-30
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ IP G V + Q W + L+FNPDR+ +N + +Y PFG G CIG+
Sbjct: 345 YTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGE 404
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
F ++Q+K + S +L Y P T + + +++ +
Sbjct: 405 NFAYVQIKTIWSTMLRLYEFDLIDGYF---PTVNYTTMIHTPENPVIRYKR 452
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 116 bits (293), Expect = 3e-30
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ IP G + YA+Q D + D LEF+PDR+ PE + + + PF G R C
Sbjct: 354 YRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSD 413
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
F Q+ L+ + + YR + S + P +
Sbjct: 414 HFSMAQLTLITAALATKYRFEQVAGSN---DAVRVGITLRPHDLLVRPVAR 461
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 116 bits (291), Expect = 5e-30
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 133 DYAIP--DSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPF 190
++ I D+ + KG ++ D ++ P E+ PDRF + E+ Y +
Sbjct: 354 NFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGDGEA---LLKYVWW 410
Query: 191 GDGP---------RICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAP 241
+GP + C GK F L +L + ++ Y E
Sbjct: 411 SNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYDSFEIELGESPLGAAVTLTFLKR 470
Query: 242 EG 243
Sbjct: 471 AS 472
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 113 bits (286), Expect = 2e-29
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGKRF 202
IP LV + YAL + + DP F+P R+ +++ I FG G R C+G+R
Sbjct: 369 IPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKDK-NITYFRNLGFGWGVRQCLGRRI 427
Query: 203 GFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQT-LLAAPEGDHWLKFTKLKPE 255
L+M + L +L N+RV S+ + T L+ PE F E
Sbjct: 428 AELEMTIFLINMLENFRVEIQHLSD----VGTTFNLILMPEKPISFTFWPFNQE 477
Score = 35.4 bits (82), Expect = 0.017
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 28 FGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFH--VGPNDYLGNN--LFFMRNPQWK 83
+ +G ++ + DP V + + + V + Y + ++ WK
Sbjct: 49 YREKLGNVESVYVIDPEDVALLFKSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWK 108
Query: 84 AARAKMVTVFSTAK 97
R + +
Sbjct: 109 KDRVALNQEVMAPE 122
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 110 bits (277), Expect = 4e-28
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAP-ENESKIVPGSYAPFGDGPRICIG 199
H I +G LV + DP +F P R+ E + ++ PFG G C+G
Sbjct: 337 HRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVG 396
Query: 200 KRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
F +Q+K + S +L Y E Y ++ +++ +
Sbjct: 397 AAFAIMQIKAIFSVLLREYEFEMAQPPE-SYRNDHSKMVVQLAQPAAVRYRR 447
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 110 bits (277), Expect = 4e-28
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 143 IPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGKRF 202
+PKG ++ + T L + + D +F P+R+ + + KI P ++ PFG G R+CIG+R
Sbjct: 377 LPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEK-KINPFAHLPFGIGKRMCIGRRL 435
Query: 203 GFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
LQ+ L L ++ Y + + P + + F
Sbjct: 436 AELQLHLALCWIIQKYDIVATDNEPVEM---LHLGILVPSRELPIAFRP 481
Score = 36.5 bits (85), Expect = 0.006
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 28 FGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDY-----LGNNLFFMRNPQW 82
F + +G+ ++ + P+L+ + L + S R Y L + +W
Sbjct: 65 FRMKLGSFDSVHLGSPSLL-EALYRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEW 123
Query: 83 KAARAKMVTVFSTAK-MKATFEIVGRICQ 110
+ R+ + + + +
Sbjct: 124 QRVRSAFQKKLMKPVEIMKLDKKINEVLA 152
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 106 bits (266), Expect = 2e-26
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ + KG + + + + P EF + FA + PFG GPR C GK
Sbjct: 386 YPVKKGTNIILNIGRMHRLE-FFPKPNEFTLENFAKNVP----YRYFQPFGFGPRGCAGK 440
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDH---WLKFTK 251
+ MK +L +L + V K L P+ + FT
Sbjct: 441 YIAMVMMKAILVTLLRRFHVKTLQGQCVESIQKIHDLSLHPDETKNMLEMIFTP 494
Score = 37.3 bits (87), Expect = 0.003
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 28 FGILIGTCPTLIIKDPTLVVKVLIKDFSHF-YDRGFHVGPNDYLGNNLFFMRN-PQWKAA 85
+ I TLII + + ++ + + + + F N WK
Sbjct: 85 MRVWISGEETLIISKSSSMFHIMKHNHYSSRFGSKLGLQCIGMHEKGIIFNNNPELWKTT 144
Query: 86 RAKMVT-VFSTAKMKATFEIVGRICQAHL 113
R S + + + HL
Sbjct: 145 R-PFFMKALSGPGLVRMVTVCAESLKTHL 172
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 105 bits (263), Expect = 3e-26
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPEN-ESKIVPGSYAPFGDGPRICIG 199
PKG LV D L+ DP +F+P+RF P+ + P ++ PFG G R C+G
Sbjct: 334 FHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLG 393
Query: 200 KRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTKL 252
K F L+MKL ++++ + T T P+ + +K L
Sbjct: 394 KEFARLEMKLFATRLIQQFDWTLLPGQNLEL---VVTPSPRPKDNLRVKLHSL 443
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 105 bits (263), Expect = 3e-26
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 133 DYAIPDSRHVIPKGVLVHIPTYALQTDAALW-SDPLEFNPDRFAPENESKIVPGSYAPFG 191
D + + KG + + L D +W D EF P+RF EN S I ++ PFG
Sbjct: 338 DTVLGGEYP-LEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAIPQHAFKPFG 394
Query: 192 DGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
+G R CIG++F + LVL +L ++ +TL PEG +K
Sbjct: 395 NGQRACIGQQFALHEATLVLGMMLKHFDFED---HTNYELDIKETLTLKPEG-FVVKAKS 450
Query: 252 LKP 254
K
Sbjct: 451 KKI 453
Score = 34.9 bits (81), Expect = 0.020
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 28 FGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDYLGNNLF--FMRNPQWKAA 85
F T + L+ + + D+ G+ LF + WK A
Sbjct: 40 FKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKA 99
Query: 86 RAKMVT-VFSTAKMKATFEIVGRICQ 110
++ FS MK ++ I
Sbjct: 100 H-NILLPSFSQQAMKGYHAMMVDIAV 124
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 104 bits (261), Expect = 3e-26
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+P G + + Y Q + D F P+RF E + G Y PFG G R+C+G+
Sbjct: 284 DRLPPGTTLVLSPYVTQRL--HFPDGEAFRPERFLEERGTP--SGRYFPFGLGQRLCLGR 339
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
F L+ +VL +R+ P + TL PEG + +
Sbjct: 340 DFALLEGPIVLRAFFRRFRLDP---LPFPRVLAQVTL--RPEGGLPARPRE 385
Score = 44.9 bits (107), Expect = 1e-05
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 13 LYRDLYHRFPASVRYFGIL---IGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDY 69
L +D A R L + P +I DP V L+ + + + +
Sbjct: 16 LQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRAL-SRL 74
Query: 70 LGNNLFFMRNPQWKAARAKMVT-VFSTAKMKATFEIVGRICQAHL 113
G L WK AR K + F ++ E + +A
Sbjct: 75 TGRGLLTDWGESWKEAR-KALKDPFLPKNVRGYREAMEEEARAFF 118
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 102 bits (256), Expect = 3e-25
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+V+PKG ++ D + +P ++P+R G++ FG G CIG+
Sbjct: 345 YVVPKGDIIACSPLLSHHDEEAFPEPRRWDPERDEKV------EGAFIGFGAGVHKCIGQ 398
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDH-WLKFTK 251
+FG LQ+K +L+ +Y T++ P +K+ +
Sbjct: 399 KFGLLQVKTILATAFRSYDFQLLRDEVPD--PDYHTMVVGPTASQCRVKYIR 448
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 101 bits (254), Expect = 7e-25
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENES---------KIVPGSYAPFG 191
+ I K ++ + + D ++ DPL F DR+ EN + Y PFG
Sbjct: 362 YNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFG 421
Query: 192 DGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQT---LLAAPEGDHWLK 248
G IC G+ F ++K L +L + + + P+ + P D K
Sbjct: 422 SGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLNDIEFK 481
Query: 249 FTK 251
+
Sbjct: 482 YKF 484
Score = 37.7 bits (88), Expect = 0.003
Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 6/101 (5%)
Query: 10 QTHLYRDLYHRFPASV--RY---FGILIGTCPTLIIKDPTLVVKVLIKDFS-HFYDRGFH 63
+ F + ++ F + I +P KVL + F
Sbjct: 27 CALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86
Query: 64 VGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEI 104
+ ++ M + + + + E
Sbjct: 87 TSAKAFGHRSIDPMDGNTTENINDTFIKTLQGHALNSLTES 127
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 97.9 bits (244), Expect = 1e-23
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 119 HSFPASVRYFGILIDYAIPDSR---HVIPKG-VLVHIPTYALQTDAALWSDPLEFNPDRF 174
+ P R +++D A+P + + +G L+ P + Q D +++DP F +RF
Sbjct: 342 TAAPFITRE--VVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRF 399
Query: 175 APEN---------ESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSK 225
+ + K + P+G G C+G+ + +K + VL++ + +
Sbjct: 400 LNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLELINA 459
Query: 226 SERRYPIKTQ---TLLAAPEGDHWLKFTK 251
L PE D +++
Sbjct: 460 DVEIPEFDLSRYGFGLMQPEHDVPVRYRI 488
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 91.3 bits (227), Expect = 2e-21
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGP----RI 196
KG V + Y D LW P EF P+RFA E+ P G G
Sbjct: 306 CEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREEN---LFDMIPQGGGHAEKGHR 362
Query: 197 CIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTKLK 253
C G+ MK L ++ E+ + + PE + + K
Sbjct: 363 CPGEGITIEVMKASLDFLVHQIEYDVP---EQSLHYSLARMPSLPESGFVMSGIRRK 416
Score = 33.1 bits (76), Expect = 0.081
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 6/108 (5%)
Query: 12 HLYRDLYHRFPASV-RY----FGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGP 66
L ++ Y RY F + + + D +
Sbjct: 16 TLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQ 75
Query: 67 NDYLG-NNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHL 113
G N + M + +++ + K E++ +A +
Sbjct: 76 KSLFGVNAIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAV 123
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 86.7 bits (215), Expect = 9e-20
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGP----RI 196
P+G V + Y DAA W+DP EF P+RF +E ++ P G G
Sbjct: 304 MAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAWDED---SFNFIPQGGGDHYLGHR 360
Query: 197 CIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEG 243
C G+ MK+ ++ R ++ I L A P+
Sbjct: 361 CPGEWIVLAIMKVAAHLLVNAMRYDVP---DQDLSIDFARLPALPKS 404
Score = 27.7 bits (62), Expect = 3.6
Identities = 8/101 (7%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 14 YRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDYLGNN 73
R A+ F T +K LG
Sbjct: 24 ISRQCQRLGANA--FESRFLLKKTNCLKGAKAAEIFYDTTRFEREGAMPVAIQKTLLGQG 81
Query: 74 -LFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHL 113
+ + + + + + + +++A ++ + +
Sbjct: 82 GVQGLDGETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAV 122
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 77.7 bits (192), Expect = 1e-16
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 142 VIPKGVLVHI-PTYALQTDAALWSDPLEFNPDRFAPENES---------KIVPGSYAPFG 191
+ +G + + P + Q D + P F DRF + + V P+G
Sbjct: 347 HLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWG 406
Query: 192 DGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSE 227
+C G+ F +K ++ +L + V C K+
Sbjct: 407 TEDNLCPGRHFAVHAIKELVFTILTRFDVELCDKNA 442
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 58.7 bits (143), Expect = 3e-10
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ IPKG V Y++ D W DP F+P+RF + + PF G R C+G+
Sbjct: 366 YSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGE 425
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
++M L + +L + +
Sbjct: 426 HLARMEMFLFFTALLQRFHLHF 447
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 58.7 bits (143), Expect = 3e-10
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
IPKG + ++ D A+W P F+P+ F + P ++ PF G R C+G+
Sbjct: 365 FRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGE 424
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
+++ L + +L ++ +
Sbjct: 425 PLARMELFLFFTSLLQHFSFSV 446
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 58.7 bits (143), Expect = 3e-10
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
++IPKG + I ++ D + +P F+P F E + + PF G RIC+G+
Sbjct: 362 YLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGE 421
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
+++ L L+ +L N+ +
Sbjct: 422 ALAGMELFLFLTSILQNFNLKS 443
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 58.0 bits (141), Expect = 6e-10
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENES--KIVPGSYAPFGDGPRICI 198
+ IPK +V + +++ D W +P F+P RF ++ K + F G R CI
Sbjct: 372 YHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCI 431
Query: 199 GKRFGFLQMKLVLSKVLLNYRVTPC 223
G+ +Q+ L +S +
Sbjct: 432 GEELSKMQLFLFISILAHQCDFRAN 456
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 57.6 bits (140), Expect = 8e-10
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+PKG V+ ++ D + +S+P +FNP F E ++ PF G R C G+
Sbjct: 361 FFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGE 420
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
+++ L + V+ N+R+
Sbjct: 421 GLARMELFLFFTTVMQNFRLKS 442
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 56.4 bits (137), Expect = 2e-09
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+VIPK V + D + P FNP F N + + PF G RIC+G+
Sbjct: 361 YVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGE 420
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
++ L + +L N+ +
Sbjct: 421 GIARTELFLFFTTILQNFSIAS 442
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 56.4 bits (137), Expect = 2e-09
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
++IPKG +V ++ D + DP +F P+ F EN + PF G R+C G+
Sbjct: 360 YLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGE 419
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
+++ L+L +L ++ + P
Sbjct: 420 GLARMELFLLLCAILQHFNLKP 441
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 55.7 bits (135), Expect = 4e-09
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ IP+G++V D +W P EF PDRF + S FG G R+C+G+
Sbjct: 375 YDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPGAN----PSALAFGCGARVCLGE 430
Query: 201 RFGFLQMKLVLSKVLLNYRVTP 222
L++ +VL+++L + + P
Sbjct: 431 SLARLELFVVLARLLQAFTLLP 452
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 55.3 bits (134), Expect = 4e-09
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPEN---ESKIVPGSYAPFGDGPRIC 197
IPK V + + + D LW DP EF P+RF + +K + FG G R C
Sbjct: 375 FYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRC 434
Query: 198 IGKRFGFLQMKLVLSKVLLNYRVTPC 223
IG+ ++ L L+ +L +
Sbjct: 435 IGEVLAKWEIFLFLAILLQQLEFSVP 460
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 52.9 bits (128), Expect = 3e-08
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPEN--ESKIVPGSYAPFGDGPRICI 198
+ KG V I +AL + W P +F P+RF + SY PFG GPR CI
Sbjct: 366 FAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCI 425
Query: 199 G 199
G
Sbjct: 426 G 426
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 6e-05
Identities = 56/267 (20%), Positives = 78/267 (29%), Gaps = 106/267 (39%)
Query: 19 HRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVG-PNDYLGNNLFFM 77
H A L+ T ++K K LIK ++ P D N+ F
Sbjct: 102 HALAAK------LLQENDTTLVK-----TKELIK---NYITARIMAKRPFDKKSNSALF- 146
Query: 78 RNPQWKAARAKMVTVFSTAKMKATFEIVGRICQ--AHLY----RDLYHSFPASVRYFGIL 131
+A + A F G Q Y RDLY ++ V G L
Sbjct: 147 -----RAVGEGNAQLV------AIFG--G---QGNTDDYFEELRDLYQTYHVLV---GDL 187
Query: 132 IDYAI----------PDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESK 181
I ++ D+ V +G+ + W LE NP P
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGL-----------NILEW---LE-NPSN-TP----- 226
Query: 182 IVPGSY---APFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTPC-----SKSERRYPIK 233
Y P P I G +Q L +Y VT + E R +K
Sbjct: 227 --DKDYLLSIPIS-CPLI------GVIQ--------LAHYVVT-AKLLGFTPGELRSYLK 268
Query: 234 -----TQTLLAAP---EGDHWLKFTKL 252
+Q L+ A E D W F
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVS 295
Score = 31.6 bits (71), Expect = 0.29
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 24/69 (34%)
Query: 15 RDLYHRFPASVRYFGILIGTC-PTL--IIKDPTLVVKVLIKDFSHFYDRGFHVG------ 65
RDLY + V G LI TL +I+ D + +G ++
Sbjct: 174 RDLYQTYHVLV---GDLIKFSAETLSELIRTTL--------DAEKVFTQGLNILEWLENP 222
Query: 66 ----PNDYL 70
DYL
Sbjct: 223 SNTPDKDYL 231
Score = 30.4 bits (68), Expect = 0.61
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 60/166 (36%)
Query: 123 ASVRYFGIL----IDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSD---PLEFNPDRFA 175
S R L +++ + +P A Q L L + FA
Sbjct: 4 YSTRPL-TLSHGSLEHVLL-----VPTASFFI----ASQ----LQEQFNKILPEPTEGFA 49
Query: 176 PENE----------------SKIVPGSYAPFGDGPRICIGKRF--GFLQMK----LVLS- 212
++E S + P F +C+ F +L+ L
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-TEFENCYLEGNDIHALAAKL 108
Query: 213 ------------KVLLNYRVTPCSKSERRYPIKTQTLL--AAPEGD 244
+++ NY +T ++R + K+ + L A EG+
Sbjct: 109 LQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGN 153
Score = 27.7 bits (61), Expect = 4.8
Identities = 48/264 (18%), Positives = 71/264 (26%), Gaps = 98/264 (37%)
Query: 5 MGRICQTHLYRDLYHRFPASVR--------YFGILIGTCPTLIIKD--PTLVVKVLIKDF 54
MG DLY A + +F G I+ + L +
Sbjct: 1631 MGM--------DLYKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTI------- 1674
Query: 55 SHFYDRGFHVGPND-YLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHL 113
HF G + N M + K +F +T
Sbjct: 1675 -HF------GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST-----SYTFRSE 1722
Query: 114 YRDLYH-SF--PASVRYFGILIDYAIPD---SRHVIPKGVLV--HIPT----Y-ALQTDA 160
L F PA L++ A + S+ +IP H Y AL A
Sbjct: 1723 KGLLSATQFTQPALT-----LMEKAAFEDLKSKGLIPADATFAGH---SLGEYAAL---A 1771
Query: 161 ALWSDPLEFNPD-------R------FAPENESK--------IVPGSYAPFGDG---PRI 196
+L +D + R P +E I PG A +
Sbjct: 1772 SL-ADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 197 C--IGKRFGFLQMKLVLSKVLLNY 218
+GKR G+ ++ V NY
Sbjct: 1830 VERVGKRTGW-----LVEIV--NY 1846
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 29/187 (15%), Positives = 46/187 (24%), Gaps = 54/187 (28%)
Query: 110 QAHLYRDLYHSF-PASVRYFGILIDYAIPDS-RHVIPKGVLVHI---PTYALQTDAALWS 164
+ Y+D+ F A V F + D + ++ K + HI T W+
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 165 --------------DPLEFN----PDRFAPENESKIVP-GSYAP-----FGDGPRICIGK 200
+ L N E + Y + D K
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAK 128
Query: 201 RF-GFLQMKLVLSKVLLNYRVTP---------CSKSE------RRYPIKTQTLLAAPEGD 244
LQ L L + LL R K+ Y ++ +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK----MDFKI 184
Query: 245 HWLKFTK 251
WL
Sbjct: 185 FWLNLKN 191
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 31.8 bits (73), Expect = 0.21
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 38/130 (29%)
Query: 126 RYFGILIDYAIPDSR----------HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFA 175
R+ + + A P R I G V T A D A + D + DR
Sbjct: 296 RWVPLGVGTAFP--RYAVEDVTLRGVTIRAGEPVLASTGAANRDQAQFPDADRIDVDRTP 353
Query: 176 PENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQ 235
++ FG G C+G +++++ L +L +R P
Sbjct: 354 NQHLG---------FGHGVHHCLGAPLARVELQVALEVLL------------QRLP---- 388
Query: 236 TL-LAAPEGD 244
+ L PE
Sbjct: 389 GIRLGIPETQ 398
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 30.7 bits (70), Expect = 0.50
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 31/108 (28%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAP---FGDGPRIC 197
++ KG LV + D + +P DR P FG G C
Sbjct: 297 VLVRKGELVLVLLEGANFDPEHFPNPGSIELDRPNP-----------TSHLAFGRGQHFC 345
Query: 198 IGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
G G ++ + +L ++ P + LA P
Sbjct: 346 PGSALGRRHAQIGIEALL------------KKMP----GVDLAVPIDQ 377
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 30.3 bits (69), Expect = 0.53
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I G V + + DA + +P F+ R A + FG G C+G+
Sbjct: 306 ATIKAGDAVLVSITLMNRDAKAYENPDIFDARRNARHHVG---------FGHGIHQCLGQ 356
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
++++ L + R P L LA P +
Sbjct: 357 NLARAELEIALGGLF------------ARIP----GLRLAVPLDE 385
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 30.3 bits (69), Expect = 0.55
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I KG V A D AL D + R + + FG G C+G
Sbjct: 300 QEIKKGDSVICSLPAANRDPALAPDVDRLDVTREPIPHVA---------FGHGVHHCLGA 350
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
L+++ V +++ RR+P L LA P D
Sbjct: 351 ALARLELRTVFTELW------------RRFP----ALRLADPAQD 379
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 30.3 bits (69), Expect = 0.61
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+I G V + D ++ DP + R A + + FG G C+G+
Sbjct: 308 QLIRAGEGVIVVNSIANRDGTVYEDPDALDIHRSARHHLA---------FGFGVHQCLGQ 358
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
L+++++L+ ++ R P TL LA P
Sbjct: 359 NLARLELEVILNALM------------DRVP----TLRLAVPVEQ 387
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 30.3 bits (69), Expect = 0.61
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 24/105 (22%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
++ + + D ++ +P EFN +R P P FG G CI +
Sbjct: 304 KLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWP-------PQDPLGFGFGDHRCIAE 356
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
++ V S + +++P L +A P G
Sbjct: 357 HLAKAELTTVFSTLY------------QKFP----DLKVAVPLGK 385
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 30.3 bits (69), Expect = 0.68
Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 38/130 (29%)
Query: 126 RYFGILIDYAIPDSR----------HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFA 175
R P R I G LV D ++ P EF+ R
Sbjct: 283 RTARAGGSVLPP--RYASEDMEFGGVTIRAGDLVLFDLGLPNFDERAFTGPEEFDAARTP 340
Query: 176 PENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQ 235
+ + FG G CIG L+++ + +K+ R P
Sbjct: 341 NPHLT---------FGHGIWHCIGAPLARLELRTMFTKLF------------TRLP---- 375
Query: 236 TL-LAAPEGD 244
L P
Sbjct: 376 ELRPELPVEQ 385
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 29.9 bits (68), Expect = 0.71
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+P V D + DP + R + + FG G C+G+
Sbjct: 313 RTVPADDGVIALLAGANHDPEQFDDPERVDFHRTDNHHVA---------FGYGVHQCVGQ 363
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
L++++ L +L RR P TL LA
Sbjct: 364 HLARLELEVALETLL------------RRVP----TLRLAGERDQ 392
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 29.9 bits (68), Expect = 0.74
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I G V + + D A++ DP + +R A + + FG GP C+G+
Sbjct: 309 VSIKAGEGVIVSMLSANWDPAVFKDPAVLDVERGARHHLA---------FGFGPHQCLGQ 359
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
+++++V + RR P +L LA P D
Sbjct: 360 NLARMELQIVFDTLF------------RRIP----SLRLAVPMED 388
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 29.9 bits (68), Expect = 0.75
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I KG V A D A +P F+ R + + FG G CIG+
Sbjct: 301 VRIAKGEQVVAHVLAADFDPAFVEEPERFDITRRPAPHLA---------FGFGAHQCIGQ 351
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
+ +++++V + RR P L LA P +
Sbjct: 352 QLARIELQIVFETLF------------RRLP----GLRLAKPVEE 380
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 29.9 bits (68), Expect = 0.82
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I +G + A D F+ R E+ + FG G C+G
Sbjct: 307 RTIARGEPILASYAAANRHPDWHEDADTFDATRTVKEHLA---------FGHGVHFCLGA 357
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
+++ L L + R+P L LA P +
Sbjct: 358 PLARMEVTLALESLF------------GRFP----DLRLADPAEE 386
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 29.5 bits (67), Expect = 1.1
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 38/130 (29%)
Query: 126 RYFGILIDYAIPDSR----------HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFA 175
R+ + R I G V++ A D ++ DP + DR
Sbjct: 286 RWISHRTSVGLA--RIALEDVEVHGTRIAAGEPVYVSYLAANRDPDVFPDPDRIDLDRDP 343
Query: 176 PENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQ 235
+ + +G+G C G +Q +L++ +L R P
Sbjct: 344 NPHLA---------YGNGHHFCTGAVLARMQTELLVDTLL------------ERLP---- 378
Query: 236 TL-LAAPEGD 244
L LA P
Sbjct: 379 GLRLAVPAEQ 388
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 29.6 bits (67), Expect = 1.1
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
VIP G V + + DP F+ R + + FG G CIG
Sbjct: 327 TVIPAGDTVLVVLADAHRTPERFPDPHRFDIRRDTAGHLA---------FGHGIHFCIGA 377
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
L+ ++ + +L R P L L G+
Sbjct: 378 PLARLEARIAVRALL------------ERCP----DLALDVSPGE 406
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 29.5 bits (67), Expect = 1.2
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+I G V D AL DP + +R A + FG G C+G
Sbjct: 309 QLIKAGDYVLCSILMANRDEALTPDPDVLDANRAAVSDVG---------FGHGIHYCVGA 359
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
+++ + RR+P L LA P +
Sbjct: 360 ALARSMLRMAYQTLW------------RRFP----GLRLAVPIEE 388
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 29.1 bits (66), Expect = 1.3
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I G V++ A D ++ DP + +R + S FG GP C G
Sbjct: 306 VRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERSPNPHVS---------FGFGPHYCPGG 356
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTL-LAAPEGD 244
L+ +L++ VL R P L LA D
Sbjct: 357 MLARLESELLVDAVL------------DRVP----GLKLAVAPED 385
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
I +G V++ A D +++++P F+ R + S FG G +C+G
Sbjct: 297 VTIRQGEQVYLLLGAANRDPSIFTNPDVFDITRSPNPHLS---------FGHGHHVCLG 346
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor
prote transmembrane; HET: BOG; 1.57A {Rattus
norvegicus}
Length = 143
Score = 27.8 bits (62), Expect = 2.4
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 5 MGRICQTHLYRDLYHRFPASVRYFGILI 32
+G++ T +Y D+ + GI I
Sbjct: 7 LGQLPDTDVYIDI-DAYEEVKEIPGIKI 33
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 28.4 bits (64), Expect = 2.6
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAP---FGDGPRIC 197
I K +V A D + P FN R + K A FG G C
Sbjct: 332 MEIKKDTIVFCMIGAANRDPEAFEQPDVFNIHR--EDLGIKSAFSGAARHLAFGSGIHNC 389
Query: 198 IGKRFGFLQMKLVLSKVL 215
+G F ++++V + VL
Sbjct: 390 VGTAFAKNEIEIVANIVL 407
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
HVI +G V + A D ++++P + DR A +
Sbjct: 285 HVIGEGEEVVVVVAAANRDPEVFAEPDRLDVDR---------PDADRALSAHRGHPGRLE 335
Query: 201 RFGFLQMKLVLSKVL 215
L
Sbjct: 336 ELVTALATAALRAAA 350
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 28.5 bits (62), Expect = 2.7
Identities = 14/79 (17%), Positives = 18/79 (22%), Gaps = 18/79 (22%)
Query: 49 VLIKDFSHFYDRGFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRI 108
V I D+ RG G F P R + + K+
Sbjct: 141 VNITDYPTVSARGIVEG----------FYGTPWTHQDRLDQIKFYGENKLNTY------- 183
Query: 109 CQAHLYRDLYHSFPASVRY 127
D YH Y
Sbjct: 184 -IYAPKDDPYHREKWREPY 201
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 28.0 bits (63), Expect = 3.2
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
I KG +V + + D ++S P F+ R + + +G GP +C G
Sbjct: 318 ASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRDTSASLA---------YGRGPHVCPG 367
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 27.6 bits (62), Expect = 4.0
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
+ KG + +P D + P+ + R S+ FG G +C+G
Sbjct: 311 VQLKKGDQILLPQMLSGLDERENACPMHVDFSR---------QKVSHTTFGHGSHLCLG 360
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 27.9 bits (61), Expect = 4.0
Identities = 14/79 (17%), Positives = 18/79 (22%), Gaps = 18/79 (22%)
Query: 49 VLIKDFSHFYDRGFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRI 108
V I D+ RG G F P R + + K+
Sbjct: 141 VNITDYPTVSARGIVEG----------FYGTPWTHQDRLDQIKFYGENKLNTY------- 183
Query: 109 CQAHLYRDLYHSFPASVRY 127
D YH Y
Sbjct: 184 -IYAPKDDPYHREKWREPY 201
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 27.6 bits (62), Expect = 4.2
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
+I G + A D ++ DP F+ R + FG GP C G
Sbjct: 296 VLIEAGSPIRFMIGAANRDPEVFDDPDVFDHTRPPAASR-------NLSFGLGPHSCAG 347
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 27.6 bits (62), Expect = 4.7
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
H +PKG + + A D + P F+PDR + FG G C+G
Sbjct: 319 HTVPKGDTMLLLLAAAHRDPTIVGAPDRFDPDRAQIRHLG---------FGKGAHFCLG 368
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 27.6 bits (62), Expect = 4.9
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 159 DAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVL 215
D + P EF DR P + FG G C+G R +Q++++ ++L
Sbjct: 346 DDEVIDRPEEFIIDRPRPRQ--------HLSFGFGIHRCVGNRLAEMQLRILWEEIL 394
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 27.2 bits (61), Expect = 5.3
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
I KG LV++P+ D A + P E DR + G G C+G
Sbjct: 296 VTIRKGDLVYLPSVLHNLDPASFEAPEEVRFDRGLAPI-------RHTTMGVGAHRCVG 347
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Length = 437
Score = 27.2 bits (59), Expect = 5.6
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 30 ILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDYLGNNLFFMRNPQWKAARAKM 89
L+G+CP+ ++K + + S + V G + F A M
Sbjct: 120 FLVGSCPSEVLKLD---LDRAAERLSGLHAPHVRVYSYTGSGLDTTF--TQGEDTCLAAM 174
Query: 90 VTVFSTAKMKATFEIVGRICQAH 112
V T + A +VG +
Sbjct: 175 VPTLDTTE-AAELIVVGALPDVV 196
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 27.3 bits (61), Expect = 5.9
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+P G V A D A + DP F P R P + FG G C+G
Sbjct: 317 RDLPSGTPVVAWLPAANRDPAEFDDPDTFLPGR---------KPNRHITFGHGMHHCLGS 367
Query: 201 RFGFLQMKLVLSKVL 215
+++ +VL +
Sbjct: 368 ALARIELSVVLRVLA 382
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 27.3 bits (61), Expect = 6.4
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
+ +G ++ +PT D A +P + + R S++ FG GP C G
Sbjct: 317 VFLKRGDMILLPTALHGLDDAANPEPWKLDFSR---------RSISHSTFGGGPHRCAG 366
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 26.8 bits (60), Expect = 7.4
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
H IP+G V + D A + DP + R A FG G C+G
Sbjct: 317 HDIPRGSRVVALLGSANRDPARFPDPDVLDVHRAAERQVG---------FGLGIHYCLG 366
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 26.9 bits (60), Expect = 8.4
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
++ +G L+ +PT D DP+ + R +++ F GP C G
Sbjct: 318 TMLKEGDLILLPTALHGLDDRHHDDPMTVDLSR---------RDVTHSTFAQGPHRCAG 367
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.456
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,174,327
Number of extensions: 246938
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 86
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)