RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14276
(256 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 100 bits (250), Expect = 4e-25
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
IPKGV+V IP+YAL D W++P +F P+RF+ +N+ I P Y PFG GPR CIG
Sbjct: 359 MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGM 418
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
RF + MKL L +VL N+ PC +++ + LL PE LK
Sbjct: 419 RFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLL-QPEKPVVLKVES 468
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 93.7 bits (231), Expect = 2e-22
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+ IPKG V Y++ D W DP F+P+RF + + PF G R C+G+
Sbjct: 353 YSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGE 412
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
++M L + +L + + E +K + + + + +
Sbjct: 413 HLARMEMFLFFTALLQRFHLHFP--HELVPDLKPRLGMTLQPQPYLICAER 461
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 92.0 bits (227), Expect = 6e-22
Identities = 24/111 (21%), Positives = 43/111 (38%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
+VIPK V + D + P FNP F N + + PF G RIC+G+
Sbjct: 353 YVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGE 412
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
++ L + +L N+ + E ++ + + ++F
Sbjct: 413 GIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLA 463
Score = 49.3 bits (116), Expect = 2e-07
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 2 TFSMGRICQTHLYRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRG 61
M R + L ++ F + +G+ P +++ + + L+ F RG
Sbjct: 16 LLQMDRKGLLRSFLRLREKYG---DVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRG 72
Query: 62 -FHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMK 99
V + G + F +W+A R + M
Sbjct: 73 KIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMG 111
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 87.9 bits (216), Expect = 2e-20
Identities = 27/173 (15%), Positives = 59/173 (34%)
Query: 81 QWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHSFPASVRYFGILIDYAIPDSR 140
+ ++ V + + + ++ + I
Sbjct: 294 VTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRN 353
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
++IPKG + I ++ D + +P F+P F E + + PF G RIC+G+
Sbjct: 354 YLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGE 413
Query: 201 RFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTKLK 253
+++ L L+ +L N+ + + A+ + L F +
Sbjct: 414 ALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIH 466
Score = 52.4 bits (124), Expect = 2e-08
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 1/120 (0%)
Query: 28 FGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRG-FHVGPNDYLGNNLFFMRNPQWKAAR 86
F + G P +++ V + LI F RG F + G + F +WK R
Sbjct: 40 FTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIR 99
Query: 87 AKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHSFPASVRYFGILIDYAIPDSRHVIPKG 146
+ M +A + AS ++ A + I
Sbjct: 100 RFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFH 159
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 76.3 bits (186), Expect = 2e-16
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWS-DPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
+ + KG + + L D +W D EF P+RF EN S I ++ PFG+G R CIG
Sbjct: 343 YPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAIPQHAFKPFGNGQRACIG 400
Query: 200 KRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTKLK 253
++F + LVL +L ++ + E +TL PEG +K K
Sbjct: 401 QQFALHEATLVLGMMLKHFDFEDHTNYELDI---KETLTLKPEG-FVVKAKSKK 450
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 75.5 bits (184), Expect = 3e-16
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDG----PRI 196
KG V + Y D LW P EF P+RFA E+ P G G
Sbjct: 301 CEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREEN---LFDMIPQGGGHAEKGHR 357
Query: 197 CIGKRFGFLQMKLVLSKVLLNYRVTPCSKSERRYPIKTQTLLAAPEGDHWLKFTKLK 253
C G+ MK L ++ E+ + + PE + + K
Sbjct: 358 CPGEGITIEVMKASLDFLVHQIEYDVP---EQSLHYSLARMPSLPESGFVMSGIRRK 411
Score = 41.2 bits (95), Expect = 7e-05
Identities = 10/120 (8%), Positives = 31/120 (25%), Gaps = 3/120 (2%)
Query: 14 YRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDYLG-N 72
++ R+ + + F + + + D + G N
Sbjct: 20 IKNRTERYNSDL--FQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVN 77
Query: 73 NLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHSFPASVRYFGILI 132
+ M + +++ + K E++ +A + R ++
Sbjct: 78 AIQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEIL 137
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 74.9 bits (182), Expect = 5e-16
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 163 WSDPLEFNPDRF-APENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVT 221
+ DP +F P R+ P E + ++ PFG G C+G F +Q+K + S +L Y
Sbjct: 355 FPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFE 414
Query: 222 PCSKSERRYPIKTQTLLAAPEGDHWLKFTK 251
E Y ++ +++ +
Sbjct: 415 MAQPPE-SYRNDHSKMVVQLAQPAAVRYRR 443
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 69.8 bits (169), Expect = 2e-14
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I +G + + + D ++S+P EF+ RF P + FG G +C+G+
Sbjct: 330 QNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRF---------PNRHLGFGWGAHMCLGQ 380
Query: 201 RFGFLQMKLVLSKVLLNYR 219
L+MK+ ++L +
Sbjct: 381 HLAKLEMKIFFEELLPKLK 399
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 67.5 bits (163), Expect = 1e-13
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 109 CQAHLYRDLYHSFPASVRYFGILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLE 168
+ + + D A+PD I +G + A D
Sbjct: 270 ADVVEETLRHEPAVKHLPLRYAVTDIALPDG-RTIARGEPILASYAAANRHPDWHEDADT 328
Query: 169 FNPDRFAPENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNY 218
F+ R E + FG G C+G +++ L L + +
Sbjct: 329 FDATRTVKE---------HLAFGHGVHFCLGAPLARMEVTLALESLFGRF 369
Score = 32.1 bits (71), Expect = 0.061
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 28 FGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPNDYLG----------NNLFFM 77
+ + + DP L+ ++L R + +G N+F
Sbjct: 25 TWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVENMFTA 84
Query: 78 RNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHSFP 122
P + R + FS ++ A V + + R
Sbjct: 85 YGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAG 129
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 67.5 bits (163), Expect = 1e-13
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 163 WSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYRVTP 222
+ D F P+RF E + G Y PFG G R+C+G+ F L+ +VL +R+ P
Sbjct: 304 FPDGEAFRPERFLEERGTP--SGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDP 361
Query: 223 CSKSERRYPI 232
+
Sbjct: 362 LPFPRVLAQV 371
Score = 47.5 bits (111), Expect = 6e-07
Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 4/126 (3%)
Query: 12 HLYRDLYHRFPASVRYFGIL---IGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGPND 68
L +D A R L + P +I DP V L+ + + + +
Sbjct: 15 DLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRAL-SR 73
Query: 69 YLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHSFPASVRYF 128
G L WK AR + F ++ E + +A
Sbjct: 74 LTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEML 133
Query: 129 GILIDY 134
+ +
Sbjct: 134 ALSLRL 139
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 64.5 bits (155), Expect = 1e-12
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
IP+ V + A D + DP F+ R + FG G C+G+
Sbjct: 302 VAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRD---------TRGHLSFGQGIHFCMGR 352
Query: 201 RFGFLQMKLVLSKVLLNYR 219
L+ ++ L + +
Sbjct: 353 PLAKLEGEVALRALFGRFP 371
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 61.0 bits (146), Expect = 2e-11
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
++ + + D ++ +P EFN +R P P FG G CI +
Sbjct: 299 KLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWP-------PQDPLGFGFGDHRCIAE 351
Query: 201 RFGFLQMKLVLSKVLLNY 218
++ V S + +
Sbjct: 352 HLAKAELTTVFSTLYQKF 369
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 60.6 bits (145), Expect = 2e-11
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 140 RHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
VI +G LV + + D ++ DP F PDR P + FG G +C+G
Sbjct: 269 DQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRT---------PNPHLSFGSGIHLCLG 319
Query: 200 KRFGFLQMKLVLSKVLLNYRVTPCSKSERR 229
L+ ++ L + +RV K E+
Sbjct: 320 APLARLEARIALEEFAKKFRVKEIVKKEKI 349
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 60.2 bits (144), Expect = 4e-11
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 141 HVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGK 200
I KG +V + + D ++S P F+ R + +G GP +C G
Sbjct: 303 ASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAYGRGPHVCPGV 353
Query: 201 RFGFLQMKLVLSKVLLNY 218
L+ ++ + + +
Sbjct: 354 SLARLEAEIAVGTIFRRF 371
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 59.4 bits (142), Expect = 6e-11
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 140 RHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIG 199
I G V++ A D ++ DP + +R P + FG GP C G
Sbjct: 298 GVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERS---------PNPHVSFGFGPHYCPG 348
Query: 200 KRFGFLQMKLVLSKVLLNY 218
L+ +L++ VL
Sbjct: 349 GMLARLESELLVDAVLDRV 367
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 59.0 bits (141), Expect = 8e-11
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 9/145 (6%)
Query: 74 LFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHSFPASVRYFGILID 133
+ + V + +L +
Sbjct: 229 VMLAGDDNISGMIGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAR 288
Query: 134 YAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDG 193
+ + I KG V A D AL D + R P + FG G
Sbjct: 289 EDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTRE---------PIPHVAFGHG 339
Query: 194 PRICIGKRFGFLQMKLVLSKVLLNY 218
C+G L+++ V +++ +
Sbjct: 340 VHHCLGAALARLELRTVFTELWRRF 364
Score = 26.7 bits (57), Expect = 3.5
Identities = 13/62 (20%), Positives = 20/62 (32%)
Query: 61 GFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHS 120
G + L NL P+ R K+ F+ KM+ + +I L
Sbjct: 71 GKGIFRPRELVGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAG 130
Query: 121 FP 122
P
Sbjct: 131 SP 132
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 59.0 bits (141), Expect = 9e-11
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 136 IPDSRHVIPKGVLVHIPTYALQTDAALWS-DPLEFNPDRFAPENESKIVPGSYAPFGDGP 194
+P VIP G + + AL D F+ R + + FG GP
Sbjct: 294 VPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSG--------NRHISFGHGP 345
Query: 195 RICIGKRFGFLQMKLVLSKVLLNY 218
+C G ++ + L + +
Sbjct: 346 HVCPGAALSRMEAGVALPALYARF 369
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 58.6 bits (140), Expect = 1e-10
Identities = 22/163 (13%), Positives = 37/163 (22%), Gaps = 8/163 (4%)
Query: 56 HFYDRGFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYR 115
+G F + +
Sbjct: 211 DPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRPQLRNLLHEKPELIPAGVE 270
Query: 116 DLYHSFPASVRYFGILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFA 175
+L + L I ++ KG LV + D + +P DR
Sbjct: 271 ELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRPN 330
Query: 176 PENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNY 218
P S+ FG G C G G ++ + +L
Sbjct: 331 PT--------SHLAFGRGQHFCPGSALGRRHAQIGIEALLKKM 365
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 58.3 bits (139), Expect = 2e-10
Identities = 18/164 (10%), Positives = 44/164 (26%), Gaps = 9/164 (5%)
Query: 56 HFYDRGFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYR 115
+ + + + + ++ +
Sbjct: 185 VVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLYLKAI 244
Query: 116 DLYHSFPASVRYFGILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFA 175
+ + V + I +G V + + D ++ D +F PDR
Sbjct: 245 EEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRN- 303
Query: 176 PENESKIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVLLNYR 219
P + FG G +C+G L+ ++ + + +R
Sbjct: 304 --------PNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFR 339
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 57.5 bits (137), Expect = 3e-10
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 150 HIPTYALQTDAALWSDPLEFNPDRFAPENESKIVPGSYAPFGDGPRICIGKRFGFLQMKL 209
D AL DP + +R S FG G C+G +++
Sbjct: 315 LCSILMANRDEALTPDPDVLDANRA---------AVSDVGFGHGIHYCVGAALARSMLRM 365
Query: 210 VLSKVLLNY 218
+ +
Sbjct: 366 AYQTLWRRF 374
Score = 30.9 bits (68), Expect = 0.16
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 7/97 (7%)
Query: 29 GILIGTCPTLIIKDPTLVVKVLIKDFSHFYDRGFHVGP------NDYLGNNLFFMRNPQW 82
+G +V ++L D HF R + P+
Sbjct: 44 STQLGRDFVWQAHGYEVVRRIL-GDHEHFTTRPQFTQSKSGAHVEAQFVGQISTYDPPEH 102
Query: 83 KAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYH 119
R + F+ +++ + + L
Sbjct: 103 TRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAE 139
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 53.2 bits (126), Expect = 7e-09
Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 19/235 (8%)
Query: 1 MTFSMGRICQTHLYRDLYHRFPASVRYFGILIGTCPTLIIKDPTLVVKVLIKDFSHFYDR 60
+ + ++ + A Y +I D +V +
Sbjct: 167 LKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSD 226
Query: 61 GFHVGPNDYLGNNLFFMRNPQWKAARAKMVTVFSTAKMKATFEIVGRICQAHLYRDLYHS 120
L L + N + + ++ E + C+ L R +
Sbjct: 227 EAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVA 286
Query: 121 FPASVRYFGILIDYAIPDSRHVIPKGVLVHIPTYALQTDAALWSDPLEFNPDRFAPENES 180
+ + ++ +L D + P+ + R
Sbjct: 287 DGRILTSDYEFHGVQLKKGDQILLPQMLSG-------LDERENACPMHVDFSRQ------ 333
Query: 181 KIVPGSYAPFGDGPRICIGKRFGFLQMKLVLSKVL---LNYRVTPCSKSERRYPI 232
S+ FG G +C+G+ ++ + L + L ++ + P ++ + + I
Sbjct: 334 ---KVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGI 385
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac
ii 18 [TaxId: 306]}
Length = 242
Score = 26.0 bits (56), Expect = 4.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 51 IKDFSHFYDRGFHVGPN 67
I +FSHFYDRG H+
Sbjct: 9 IDNFSHFYDRGDHLVNG 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.143 0.456
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,047,867
Number of extensions: 49983
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 35
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.7 bits)