RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14277
(217 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 107 bits (267), Expect = 7e-28
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 53 IRMQEVVSGVFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYE 112
+ E+V+ + I G+E ++S + +++ELA + +VQ K + E+ V TY+
Sbjct: 263 LSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKA-PPTYD 321
Query: 113 DLAKMTYLEQVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDAT 172
+ +M YL+ V++E LRL+P+ L R C +D I I KGV+V IP+YAL D
Sbjct: 322 TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEING--MFIPKGVVVMIPSYALHRDPK 379
Query: 173 LWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
W++P +F P+RF+ +N+ I P Y PFG GPR CI
Sbjct: 380 YWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCI 416
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 106 bits (264), Expect = 2e-27
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)
Query: 53 IRMQEVVSGVFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYE 112
Q ++ V L G E +++T + V ++ ++E+++V +
Sbjct: 256 FHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHR-PPALD 314
Query: 113 DLAKMTYLEQVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDAT 172
D AKM Y + VI E RL L +VI K V + D
Sbjct: 315 DRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFR-GYVIPKNTEVFPVLSSALHDPR 373
Query: 173 LWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
+ P FNP F N + ++PF G R C+
Sbjct: 374 YFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICL 410
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 98.7 bits (244), Expect = 1e-24
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 55 MQEVVSGVFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDL 114
+ ++ V LI+ G E +T+ + +A +Q + ++E+ + G K +++D
Sbjct: 258 KENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNG-KPSWDDK 316
Query: 115 AKMTYLEQVISEALRLYP-LGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATL 173
KM Y E V+ E LR + G+F ++D + + I KG V Y++ D
Sbjct: 317 CKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRG--YSIPKGTTVITNLYSVHFDEKY 374
Query: 174 WSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
W DP F+P+RF + + VPF G R C+
Sbjct: 375 WRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCL 410
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 85.9 bits (211), Expect = 3e-20
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 6/210 (2%)
Query: 1 MFTPGIFFFYLFILFFTTTTTTTTTTTNNNNNNNNNNNNNKNNINSPNFLGVIRMQEVVS 60
+ F I + +++ + N P + + +
Sbjct: 195 AYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRY 254
Query: 61 GVFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDLAKMTYL 120
+ ++ GHE ++ + L+ L N V KA E +V + +Y+ + ++ Y+
Sbjct: 255 QIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPV--PSYKQVKQLKYV 312
Query: 121 EQVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWS-DPLE 179
V++EALRL+P +D + + ++KG + + L D T+W D E
Sbjct: 313 GMVLNEALRLWPTAPAFSLYAKEDTVLGG-EYPLEKGDELMVLIPQLHRDKTIWGDDVEE 371
Query: 180 FNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
F P+RF EN S I ++ PFG+G R CI
Sbjct: 372 FRPERF--ENPSAIPQHAFKPFGNGQRACI 399
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 80.5 bits (197), Expect = 2e-18
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 2/148 (1%)
Query: 62 VFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDLAKMTYLE 121
L G E +++T L L + EV K + E+++V +D + M Y +
Sbjct: 266 AVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRS-PCMQDRSHMPYTD 324
Query: 122 QVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSDPLEFN 181
V+ E R L I ++I KG + I ++ D + +P F+
Sbjct: 325 AVVHEVQRYIDLLPTSLP-HAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFD 383
Query: 182 PDRFAPENESKIVPGSYVPFGDGPRTCI 209
P F E + ++PF G R C+
Sbjct: 384 PHHFLDEGGNFKKSKYFMPFSAGKRICV 411
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 62.1 bits (149), Expect = 4e-12
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 130 LYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPEN 189
+ + R D A+PD I +G + A D F+ R E
Sbjct: 280 EPAVKHLPLRYAVTDIALPDG-RTIARGEPILASYAAANRHPDWHEDADTFDATRTVKE- 337
Query: 190 ESKIVPGSYVPFGDGPRTCI 209
++ FG G C+
Sbjct: 338 --------HLAFGHGVHFCL 349
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 61.4 bits (147), Expect = 9e-12
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 152 HVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
I++G + + + D ++S+P EF+ RF P ++ FG G C+
Sbjct: 330 QNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRF---------PNRHLGFGWGAHMCL 378
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 59.8 bits (143), Expect = 2e-11
Identities = 29/155 (18%), Positives = 47/155 (30%), Gaps = 30/155 (19%)
Query: 55 MQEVVSGVFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDL 114
E+ S VL++ G E S S + L + + RR+
Sbjct: 226 ADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRRD----------------- 268
Query: 115 AKMTYLEQVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLW 174
+ L + E LR R ++ I I + V + A D +
Sbjct: 269 --PSALPNAVEEILRYIAPPETTTRFAAEEVEIGG--VAIPQYSTVLVANGAANRDPKQF 324
Query: 175 SDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
DP F+ R ++ FG G C+
Sbjct: 325 PDPHRFDVTRD---------TRGHLSFGQGIHFCM 350
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 57.1 bits (136), Expect = 2e-10
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 131 YPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPENE 190
P N + + I+ G V++ A D ++ DP + +R
Sbjct: 278 IPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERS----- 332
Query: 191 SKIVPGSYVPFGDGPRTCI 209
P +V FG GP C
Sbjct: 333 ----PNPHVSFGFGPHYCP 347
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 56.4 bits (134), Expect = 5e-10
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 174 WSDPLEFNPDRF-APENESKIVPGSYVPFGDGPRTCI 209
+ DP +F P R+ P E + +++PFG G C+
Sbjct: 355 FPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCV 391
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 55.6 bits (132), Expect = 6e-10
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 27/145 (18%)
Query: 65 LIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDLAKMTYLEQVI 124
L+V G+ + + LA + + + + + V
Sbjct: 232 LLVAGNATMVNMIALGVATLAQHPDQLAQLKAN------------------PSLAPQFVE 273
Query: 125 SEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSDPLEFNPDR 184
+ R +D I D +G++ + D ++ +P EFN +R
Sbjct: 274 ELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASN--QSANRDEEVFENPDEFNMNR 331
Query: 185 FAPENESKIVPGSYVPFGDGPRTCI 209
P P + FG G CI
Sbjct: 332 KWP-------PQDPLGFGFGDHRCI 349
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 55.4 bits (132), Expect = 9e-10
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 27/163 (16%)
Query: 51 GVIRMQEVVSGVFVLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVT 110
G + + + ++ + L + + ++
Sbjct: 220 GSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEHPKYKE------------------ 261
Query: 111 YEDLAKMTYLEQVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTD 170
+ E + E R YP G L +D+ + +KG V + Y D
Sbjct: 262 WLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDF--VWNNCEFKKGTSVLLDLYGTNHD 319
Query: 171 ATLWSDPLEFNPDRFAPENESKIVPGSYVPFGDG----PRTCI 209
LW P EF P+RFA E+ +P G G C
Sbjct: 320 PRLWDHPDEFRPERFAEREEN---LFDMIPQGGGHAEKGHRCP 359
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 54.8 bits (130), Expect = 1e-09
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 135 NGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPENESKIV 194
+ R +D + I+KG V A D L D + R
Sbjct: 281 SPTPRIAREDLTLAG--QEIKKGDSVICSLPAANRDPALAPDVDRLDVTRE--------- 329
Query: 195 PGSYVPFGDGPRTCI 209
P +V FG G C+
Sbjct: 330 PIPHVAFGHGVHHCL 344
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 54.8 bits (130), Expect = 1e-09
Identities = 28/179 (15%), Positives = 44/179 (24%), Gaps = 29/179 (16%)
Query: 31 NNNNNNNNNNKNNINSPNFLGVIRMQEVVSGVFVLIVGGHENSTSTSTNVLHELAYNQEV 90
+ ++ + + + +E+ LI+GG E + L N
Sbjct: 205 ARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPGQ 264
Query: 91 QDKARREVQKVYKEGGGKVTYEDLAKMTYLEQVISEALRLYPLGNGLFRECTQDYAIPDS 150
+ V L P+ R +D I
Sbjct: 265 IELLFES------------------PEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQ 306
Query: 151 PHVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
VL I D L DP + +R S V FG G C+
Sbjct: 307 LIKAGDYVLCSI--LMANRDEALTPDPDVLDANRA---------AVSDVGFGHGIHYCV 354
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 52.5 bits (124), Expect = 7e-09
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 152 HVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
I+KG +V + + D T++S P F+ R + + +G GP C
Sbjct: 303 ASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAYGRGPHVCP 351
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 52.5 bits (124), Expect = 8e-09
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 117 MTYLEQVISEALRLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSD 176
+ + EALR P R + I VI +G LV + + D ++ D
Sbjct: 237 EKGALKAVEEALRFSPPVMRTIRVTKEKVKIR--DQVIDEGELVRVWIASANRDEEVFKD 294
Query: 177 PLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
P F PDR P ++ FG G C+
Sbjct: 295 PDSFIPDRT---------PNPHLSFGSGIHLCL 318
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 52.5 bits (124), Expect = 9e-09
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 129 RLYPLGNGLFRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWS-DPLEFNPDRFAP 187
P + L R +D + VI G + + AL D F+ R +
Sbjct: 278 FSTPTSHVLIRFAAEDVPV--GDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSG 335
Query: 188 ENESKIVPGSYVPFGDGPRTCI 209
++ FG GP C
Sbjct: 336 --------NRHISFGHGPHVCP 349
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 50.5 bits (119), Expect = 4e-08
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 174 WSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
+ D F P+RF E + G Y PFG G R C+
Sbjct: 304 FPDGEAFRPERFLEERGTP--SGRYFPFGLGQRLCL 337
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 49.5 bits (116), Expect = 7e-08
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 138 FRECTQDYAIPDSPHVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAPENESKIVPGS 197
R+ + I++G V + + D ++ D +F PDR P
Sbjct: 258 VRKTKERV--KLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRN---------PNP 306
Query: 198 YVPFGDGPRTCI 209
++ FG G C+
Sbjct: 307 HLSFGSGIHLCL 318
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 48.2 bits (113), Expect = 2e-07
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 173 LWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
+ +P DR P S++ FG G C
Sbjct: 317 HFPNPGSIELDRPNPT--------SHLAFGRGQHFCP 345
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 44.3 bits (103), Expect = 5e-06
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 161 HIPTYALQTDATLWSDPLEFNPDRFAPENESKIVPGSYVPFGDGPRTCI 209
+P D + P+ + R S+ FG G C+
Sbjct: 309 LLPQMLSGLDERENACPMHVDFSRQ---------KVSHTTFGHGSHLCL 348
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
virus type 1 [TaxId: 11676]}
Length = 316
Score = 31.2 bits (71), Expect = 0.082
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 5 GIFFFYLFILFFTTTTTTTTTTTNNNNNNNNNNNN-----NKNNIN----------SPNF 49
G FF+ F +T +T +T +NN ++ K IN +P
Sbjct: 205 GEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPI 264
Query: 50 LGVIRMQEVVSGVFVLIVGGHENSTS 75
G IR ++G+ + GG+ N+ S
Sbjct: 265 SGQIRCSSNITGLLLTRDGGNSNNES 290
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 27.3 bits (60), Expect = 1.4
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 14/54 (25%)
Query: 64 VLIVGGHENSTSTSTNVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDLAKM 117
LIV H TS + + + K+ G +V DL M
Sbjct: 5 ALIVLAHSERTSFN----YAMK----------EAAAAALKKKGWEVVESDLYAM 44
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 26.5 bits (57), Expect = 2.6
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 79 NVLHELAYNQEVQDKARREVQKVYKEGGGKVTYEDLAKM 117
VL + + + K + V + ++Y++ +
Sbjct: 277 KVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVML 315
>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-3 [TaxId: 123217]}
Length = 84
Score = 24.9 bits (54), Expect = 3.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 106 GGKVTYEDLAKMTYLEQVISEALRLYP 132
G +E A TYL + + +LYP
Sbjct: 58 NGFALWESRAICTYLAEKYGKDDKLYP 84
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins
{Human coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 25.6 bits (56), Expect = 5.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 21 TTTTTTTNNNNNNNNNNNNNKNNIN 45
T T + + N+ + NIN
Sbjct: 6 TQKTGAHETSLSAAGNSIIHYTNIN 30
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 26.0 bits (56), Expect = 5.4
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 69 GHENSTSTSTNVLHELAYNQEVQDKAR---REVQKVYKEGGGKVTYEDLA----KMTY 119
+ T TN ++ ++ +EV V G V Y +A MT
Sbjct: 1319 PGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTT 1376
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 190
Score = 25.2 bits (54), Expect = 5.5
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 88 QEVQDKARREVQKVYKEGGGKVTYEDLAKMTYLEQVISEALRLY 131
+ + ++ + + K G +T ++ + + ++ I AL LY
Sbjct: 143 ATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALNLY 186
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced)
protein {Mouse (Mus musculus) [TaxId: 10090]}
Length = 315
Score = 25.3 bits (54), Expect = 5.9
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 3/96 (3%)
Query: 92 DKARREVQKVYKEGGGKVTYEDLAKMTYLEQVISEALRLYPLGNGLFRECTQDYAIPDSP 151
++ + V+ G + D A E + EA++ + RE +
Sbjct: 25 NQVKEAVKAAIDAG---YRHIDCAYAYCNENEVGEAIQEKIKEKAVQREDLFIVSKLWPT 81
Query: 152 HVIQKGVLVHIPTYALQTDATLWSDPLEFNPDRFAP 187
+K + L P P
Sbjct: 82 CFEKKLLKEAFQKTLTDLKLDYLDLYLIHWPQGLQP 117
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase,
subunit II {Cow (Bos taurus) [TaxId: 9913]}
Length = 90
Score = 24.0 bits (52), Expect = 8.3
Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 5 GIFFFY---LFILFFTTTTTTTTTTTNNNNNNNNNNNNNKNNI 44
+ F+ L I+F ++ + + + + +
Sbjct: 19 ELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEV 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.397
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,176
Number of extensions: 35566
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 44
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)