BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14279
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
           Resolution
 pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
           Resolution
          Length = 297

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 30  ILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 63
           ++E+MY G + VS   +   L+ ADR  +  L E
Sbjct: 114 VIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKE 147


>pdb|2DYM|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
          Atg16(1-46) Complex
 pdb|2DYM|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
          Atg16(1-46) Complex
 pdb|2DYM|E Chain E, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
          Atg16(1-46) Complex
 pdb|2DYM|G Chain G, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
          Atg16(1-46) Complex
 pdb|2DYO|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg5-
          Atg16(1-57) Complex
          Length = 297

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 26 HLTDILEFMYAGEVNVSQDQLPSFL 50
          H+ DI + ++ GE+NV     PSFL
Sbjct: 3  HMNDIKQLLWNGELNVLVSIDPSFL 27


>pdb|2PQL|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-Tryptamine
           Complex
 pdb|2QEB|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-Histamine
           Complex
 pdb|2QEB|B Chain B, Crystal Structure Of Anopheles Gambiae D7r4-Histamine
           Complex
 pdb|2QEH|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-Serotonin
           Complex
 pdb|2QEO|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-norepinephrine
           Complex
 pdb|2QEO|B Chain B, Crystal Structure Of Anopheles Gambiae D7r4-norepinephrine
           Complex
 pdb|2QEV|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4
          Length = 145

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 2   VSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLK 51
           V + +  H F + L      +TFK + D++E   AG+V   Q     F++
Sbjct: 85  VPTSERAHVFYKCLLKSTTGRTFKKVFDLMELKKAGKVPQHQRYTAEFVQ 134


>pdb|1BG7|A Chain A, Localized Unfolding At The Junction Of Three Ferritin
           Subunits. A Mechanism For Iron Release?
          Length = 176

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 5   EQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI--KGLA 62
           E+  +Q L  L  V  DK   HL D LE  Y  E   S  QL  ++    RL +   G+ 
Sbjct: 104 EKTVNQALLDLHKVGSDKVDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMG 163

Query: 63  E 63
           E
Sbjct: 164 E 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,728,473
Number of Sequences: 62578
Number of extensions: 51476
Number of successful extensions: 157
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)