Query psy14279
Match_columns 73
No_of_seqs 132 out of 1042
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 15:46:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02790 Kelch-like protein; P 99.8 1.6E-21 3.6E-26 142.7 2.7 67 3-69 38-116 (480)
2 KOG4441|consensus 99.8 1.3E-19 2.7E-24 135.8 1.5 66 3-68 53-129 (571)
3 PHA02713 hypothetical protein; 99.7 5.9E-19 1.3E-23 131.5 0.4 65 3-69 43-119 (557)
4 PHA03098 kelch-like protein; P 99.6 6.2E-17 1.4E-21 118.5 1.5 66 3-69 28-101 (534)
5 PF00651 BTB: BTB/POZ domain; 99.5 2.7E-15 5.9E-20 89.3 1.7 67 4-70 29-108 (111)
6 smart00225 BTB Broad-Complex, 99.5 1.5E-14 3.3E-19 81.5 2.7 63 4-66 17-90 (90)
7 KOG4350|consensus 98.6 9.1E-09 2E-13 76.3 0.7 66 3-68 61-140 (620)
8 KOG2075|consensus 98.1 1.2E-06 2.5E-11 65.6 1.7 65 3-67 136-211 (521)
9 KOG4682|consensus 98.0 3.2E-06 6.8E-11 62.5 2.0 61 8-68 90-165 (488)
10 KOG4591|consensus 97.4 2.8E-05 6E-10 53.6 -0.2 64 3-68 86-161 (280)
11 KOG0783|consensus 97.3 7.8E-05 1.7E-09 59.5 1.0 67 3-69 728-811 (1267)
12 KOG2716|consensus 96.8 0.00073 1.6E-08 46.6 2.0 61 8-68 26-100 (230)
13 KOG0783|consensus 96.8 0.0025 5.4E-08 51.3 4.7 66 3-68 575-684 (1267)
14 smart00512 Skp1 Found in Skp1 96.5 0.0026 5.6E-08 38.2 2.6 52 7-58 22-104 (104)
15 PF02214 BTB_2: BTB/POZ domain 96.2 0.0053 1.2E-07 35.8 2.8 45 21-65 47-94 (94)
16 KOG1665|consensus 95.8 0.0095 2.1E-07 41.8 2.8 54 18-71 55-109 (302)
17 KOG1724|consensus 95.5 0.0056 1.2E-07 40.2 0.9 51 18-68 47-122 (162)
18 KOG3473|consensus 93.5 0.077 1.7E-06 32.7 2.5 53 6-58 36-112 (112)
19 PF11822 DUF3342: Domain of un 92.5 0.039 8.3E-07 39.8 0.2 59 10-68 28-99 (317)
20 PF03931 Skp1_POZ: Skp1 family 91.6 0.25 5.4E-06 27.0 2.7 31 6-36 20-59 (62)
21 KOG2838|consensus 91.1 0.045 9.8E-07 39.5 -0.7 67 3-69 268-384 (401)
22 KOG0511|consensus 90.1 0.28 6E-06 36.9 2.6 50 10-59 314-378 (516)
23 PF01466 Skp1: Skp1 family, di 85.3 0.11 2.3E-06 29.8 -1.6 28 41-68 11-38 (78)
24 KOG2714|consensus 84.4 1.1 2.5E-05 33.8 3.0 55 9-63 35-102 (465)
25 KOG3840|consensus 83.0 1.5 3.2E-05 32.3 3.0 42 18-59 143-185 (438)
26 KOG1987|consensus 79.3 0.33 7.1E-06 33.3 -1.3 66 3-68 117-196 (297)
27 KOG2838|consensus 78.4 1.3 2.8E-05 32.2 1.4 55 4-58 148-218 (401)
28 KOG3713|consensus 60.9 14 0.00031 28.2 3.7 40 21-60 86-126 (477)
29 COG5201 SKP1 SCF ubiquitin lig 60.9 12 0.00025 24.4 2.8 51 18-68 42-117 (158)
30 KOG2723|consensus 54.6 13 0.00029 25.6 2.5 46 23-68 58-105 (221)
31 PF00356 LacI: Bacterial regul 45.1 15 0.00033 19.0 1.3 36 19-58 8-43 (46)
32 PF02637 GatB_Yqey: GatB domai 44.3 35 0.00076 21.3 3.1 19 22-40 40-58 (148)
33 PF06404 PSK: Phytosulfokine p 43.3 8.1 0.00018 22.6 0.0 13 26-38 66-78 (81)
34 PF14823 Sirohm_synth_C: Siroh 38.7 11 0.00023 21.4 0.1 22 18-39 46-67 (70)
35 PF04195 Transposase_28: Putat 38.5 42 0.00092 22.4 2.9 31 7-37 70-104 (181)
36 PF09116 gp45-slide_C: gp45 sl 38.0 21 0.00045 22.2 1.3 25 39-63 4-28 (112)
37 cd01392 HTH_LacI Helix-turn-he 37.1 34 0.00075 17.0 1.9 35 20-58 7-41 (52)
38 PF06200 tify: tify domain; I 35.2 17 0.00036 18.2 0.4 21 34-54 11-35 (36)
39 PRK02853 hypothetical protein; 33.8 52 0.0011 21.8 2.7 38 21-59 123-160 (161)
40 PF08672 APC2: Anaphase promot 32.6 29 0.00064 19.0 1.2 43 11-53 1-45 (60)
41 smart00354 HTH_LACI helix_turn 31.6 42 0.0009 18.3 1.8 36 20-59 10-45 (70)
42 PF00633 HHH: Helix-hairpin-he 30.7 56 0.0012 15.3 1.9 16 18-33 15-30 (30)
43 PF07085 DRTGG: DRTGG domain; 29.4 86 0.0019 18.1 3.0 38 25-62 29-66 (105)
44 PRK10715 flk flagella biosynth 29.3 37 0.0008 24.9 1.6 37 7-43 113-151 (335)
45 KOG2715|consensus 28.6 24 0.00051 24.0 0.5 47 18-64 67-113 (210)
46 PF11459 DUF2893: Protein of u 28.1 31 0.00067 19.7 0.8 35 22-60 18-52 (69)
47 PF02291 TFIID-31kDa: Transcri 27.9 47 0.001 21.0 1.7 19 18-36 26-44 (129)
48 PF12926 MOZART2: Mitotic-spin 27.8 47 0.001 19.9 1.6 33 21-56 40-72 (88)
49 PF06793 UPF0262: Uncharacteri 27.4 53 0.0011 21.7 1.9 26 35-60 133-158 (158)
50 PF13817 DDE_Tnp_IS66_C: IS66 26.5 94 0.002 15.5 2.4 22 10-31 15-36 (39)
51 PRK10423 transcriptional repre 25.4 56 0.0012 22.0 1.9 36 19-58 7-42 (327)
52 PF14178 YppF: YppF-like prote 25.3 68 0.0015 17.9 1.8 33 11-43 5-41 (60)
53 TIGR01481 ccpA catabolite cont 25.3 50 0.0011 22.3 1.6 37 19-59 10-46 (329)
54 COG1541 PaaK Coenzyme F390 syn 25.3 62 0.0013 24.5 2.2 26 7-33 40-65 (438)
55 COG2450 Uncharacterized conser 24.7 82 0.0018 20.0 2.4 19 23-41 50-68 (124)
56 PF11834 DUF3354: Domain of un 24.3 1E+02 0.0023 17.3 2.6 24 36-59 18-42 (69)
57 PF15125 TMEM238: TMEM238 prot 24.2 20 0.00044 20.3 -0.4 13 33-45 52-64 (65)
58 PF04699 P16-Arc: ARP2/3 compl 24.1 56 0.0012 21.2 1.6 22 18-39 94-115 (152)
59 PF02545 Maf: Maf-like protein 24.1 61 0.0013 21.5 1.8 17 1-17 1-17 (195)
60 PRK10727 DNA-binding transcrip 23.6 61 0.0013 22.2 1.8 37 18-58 9-45 (343)
61 PF14923 CCDC142: Coiled-coil 22.8 81 0.0018 24.1 2.4 27 24-50 310-336 (450)
62 PF14769 CLAMP: Flagellar C1a 22.6 1.3E+02 0.0028 17.6 2.9 29 9-37 42-79 (101)
63 KOG0511|consensus 21.2 30 0.00064 26.4 -0.1 58 5-62 169-235 (516)
64 PRK00078 Maf-like protein; Rev 21.2 94 0.002 20.6 2.3 17 1-17 1-17 (192)
65 PF12542 CWC25: Pre-mRNA splic 20.3 33 0.00071 20.0 -0.1 9 31-39 7-15 (96)
No 1
>PHA02790 Kelch-like protein; Provisional
Probab=99.83 E-value=1.6e-21 Score=142.66 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=62.5
Q ss_pred EEEeeCCHHHHHhhh----------hc--CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY----------VI--MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~----------~l--~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+||||||||||+||+ .+ .|+++++|+.||+|+|||++.|+.+|++++++||++||++.+.+.|++..
T Consensus 38 ~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL 116 (480)
T PHA02790 38 TILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFI 116 (480)
T ss_pred hhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHH
Confidence 589999999999998 23 38999999999999999999999999999999999999999999998863
No 2
>KOG4441|consensus
Probab=99.76 E-value=1.3e-19 Score=135.83 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=63.5
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
+||||||||||+||+ .++++++.+++.+++|+|||++.|+.+|+++++++|.+|||+++.+.|.+.
T Consensus 53 ~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~f 129 (571)
T KOG4441|consen 53 VVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEF 129 (571)
T ss_pred HHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 489999999999999 789999999999999999999999999999999999999999999999876
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.72 E-value=5.9e-19 Score=131.52 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=60.9
Q ss_pred EEEeeCCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+||||||||||+||+ .|+++++++++.||+|+|||+ |+++|++++|.+|++||++.+++.|++..
T Consensus 43 ~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l 119 (557)
T PHA02713 43 TILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYI 119 (557)
T ss_pred HHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 479999999999998 478999999999999999998 78999999999999999999999998874
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.63 E-value=6.2e-17 Score=118.50 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=62.1
Q ss_pred EEEeeCCHHHHHhhh--------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY--------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~--------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+||||+|||||+||. .+++ ++++++.+|+|+|||++.++.+++.+++.+|++||++.+++.|++..
T Consensus 28 ~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l 101 (534)
T PHA03098 28 IILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYI 101 (534)
T ss_pred HHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 479999999999998 5778 99999999999999999999999999999999999999999998863
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.53 E-value=2.7e-15 Score=89.30 Aligned_cols=67 Identities=24% Similarity=0.441 Sum_probs=62.5
Q ss_pred EEeeCCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeec-CCcHHHHHHHHhhcCccccccccccccc
Q psy14279 4 SEQFCHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVS-QDQLPSFLKTADRLKIKGLAEAPQSSVK 70 (73)
Q Consensus 4 VLAa~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~-~~~v~~ll~aA~~Lqi~~l~~~~~~~~~ 70 (73)
+|+++||||+.||. .++++++++++.+++|+|+|++.++ .+++.+++.+|+.|+++.+.+.|++...
T Consensus 29 iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 29 ILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp HHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred hhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 68999999999998 4688999999999999999999999 9999999999999999999999987644
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.49 E-value=1.5e-14 Score=81.46 Aligned_cols=63 Identities=29% Similarity=0.572 Sum_probs=59.3
Q ss_pred EEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccc
Q psy14279 4 SEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQ 66 (73)
Q Consensus 4 VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~ 66 (73)
+|++.|+||+.||. .++++++..++.+++|+|+|++.++.+++.+++.+|.+++++++.+.|+
T Consensus 17 iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 17 VLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 68899999999998 4788999999999999999999999999999999999999999998885
No 7
>KOG4350|consensus
Probab=98.62 E-value=9.1e-09 Score=76.27 Aligned_cols=66 Identities=20% Similarity=0.372 Sum_probs=55.9
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecC---CcHHHHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQ---DQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~---~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
++|||.|.|||+|+- .|++-..++++.+|.|||||++.++. +-+.++|..|.++++..+..+-.++
T Consensus 61 vILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeY 140 (620)
T KOG4350|consen 61 VILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEY 140 (620)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 589999999999986 56777899999999999999997754 5578889999999988887765554
No 8
>KOG2075|consensus
Probab=98.12 E-value=1.2e-06 Score=65.61 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=60.7
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQS 67 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~ 67 (73)
.|||.+|..|.+||. .++++.|+++..+|.|+|+-++.+..+++-.++.+|+.+-++.+.+.|=+
T Consensus 136 ~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVk 211 (521)
T KOG2075|consen 136 LVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVK 211 (521)
T ss_pred hhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 378999999999998 68999999999999999999999999999999999999999999887754
No 9
>KOG4682|consensus
Probab=98.00 E-value=3.2e-06 Score=62.54 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=56.5
Q ss_pred CCHHHHHhhh---------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 8 CHQFLEALFY---------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 8 ~S~YFr~lf~---------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
-|+||++||. .-+.|+.+++...+.=+|..++.|..+.+..++.+|..||++++.+-|.++
T Consensus 90 QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~ev 165 (488)
T KOG4682|consen 90 QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEV 165 (488)
T ss_pred ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3899999998 235799999999999999999999999999999999999999999999876
No 10
>KOG4591|consensus
Probab=97.44 E-value=2.8e-05 Score=53.58 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=55.0
Q ss_pred EEEeeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcceEeecCCc--HHHHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAGEVNVSQDQ--LPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~--v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
.||||.|++.+ |. .+.+.+++++...+.|+||.++....+. +.++.++|+.+|+.-+.+.|+..
T Consensus 86 fVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~ 161 (280)
T KOG4591|consen 86 FVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKG 161 (280)
T ss_pred hhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999875 44 5678999999999999999999887766 67899999999999999998764
No 11
>KOG0783|consensus
Probab=97.32 E-value=7.8e-05 Score=59.48 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=54.6
Q ss_pred EEEeeCCHHHHHhhh---------hcCC--CCHHHHHHHhHhhh-cceEee-----cCCcHHHHHHHHhhcCcccccccc
Q psy14279 3 SSEQFCHQFLEALFY---------VIMD--KTFKHLTDILEFMY-AGEVNV-----SQDQLPSFLKTADRLKIKGLAEAP 65 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~---------~l~~--v~~~~l~~ll~f~Y-tG~i~i-----~~~~v~~ll~aA~~Lqi~~l~~~~ 65 (73)
++|+|.++||..||. ...+ ++.+.|+.+|||.| +-+..+ ..+-+-+++..|+.|-|..+++.|
T Consensus 728 c~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ic 807 (1267)
T KOG0783|consen 728 CFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSIC 807 (1267)
T ss_pred eEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998 3333 55999999999999 445433 335578899999999999999999
Q ss_pred cccc
Q psy14279 66 QSSV 69 (73)
Q Consensus 66 ~~~~ 69 (73)
|...
T Consensus 808 e~~l 811 (1267)
T KOG0783|consen 808 EQSL 811 (1267)
T ss_pred HHHH
Confidence 8763
No 12
>KOG2716|consensus
Probab=96.83 E-value=0.00073 Score=46.63 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=51.6
Q ss_pred CCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeecCC--cHHHHHHHHhhcCccccccccccc
Q psy14279 8 CHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVSQD--QLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 8 ~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~~~--~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
-..||++|+. -+-|=+|..+..||+||=.|.+.++++ ++.+++.=|.++.+.+|++.|+..
T Consensus 26 ~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~ 100 (230)
T KOG2716|consen 26 FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSA 100 (230)
T ss_pred hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568999998 123458999999999999999988665 477999999999999999999985
No 13
>KOG0783|consensus
Probab=96.76 E-value=0.0025 Score=51.28 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=49.5
Q ss_pred EEEeeCCHHHHHhhh-----------------------hcCCCCHHHHHHHhHhhhcceEe--------------ecCCc
Q psy14279 3 SSEQFCHQFLEALFY-----------------------VIMDKTFKHLTDILEFMYAGEVN--------------VSQDQ 45 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------------------~l~~v~~~~l~~ll~f~YtG~i~--------------i~~~~ 45 (73)
.||++.|++||.+|. ...+++|..++.||+|+||...- +-++|
T Consensus 575 fIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N 654 (1267)
T KOG0783|consen 575 FILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKEN 654 (1267)
T ss_pred EEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccC
Confidence 489999999999997 25789999999999999998432 23345
Q ss_pred HHH-------HHHHHhhcCccccccccccc
Q psy14279 46 LPS-------FLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 46 v~~-------ll~aA~~Lqi~~l~~~~~~~ 68 (73)
..+ +...+..+++..+...-+++
T Consensus 655 ~~qrtrtCeMl~~~lekf~l~el~~~~~s~ 684 (1267)
T KOG0783|consen 655 LSQRTRTCEMLANLLEKFHLAELLPFSVSR 684 (1267)
T ss_pred hhhcccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence 555 66677777776666555444
No 14
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.51 E-value=0.0026 Score=38.15 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=40.6
Q ss_pred eCCHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEe-------------------ecCCcHHHHHHHHhh
Q psy14279 7 FCHQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVN-------------------VSQDQLPSFLKTADR 55 (73)
Q Consensus 7 a~S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~-------------------i~~~~v~~ll~aA~~ 55 (73)
..|.-+|.|+. .+++|+..+|+.+++|++-.+-. ++.+.+.+++.||++
T Consensus 22 ~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAny 101 (104)
T smart00512 22 RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANY 101 (104)
T ss_pred HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35777788776 47789999999999999855321 445578899999999
Q ss_pred cCc
Q psy14279 56 LKI 58 (73)
Q Consensus 56 Lqi 58 (73)
|+|
T Consensus 102 L~I 104 (104)
T smart00512 102 LDI 104 (104)
T ss_pred hCC
Confidence 986
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.21 E-value=0.0053 Score=35.79 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=34.8
Q ss_pred CCCHHHHHHHhHhhhc-ceEeec-CCcHHHHHHHHhhcCcccc-cccc
Q psy14279 21 DKTFKHLTDILEFMYA-GEVNVS-QDQLPSFLKTADRLKIKGL-AEAP 65 (73)
Q Consensus 21 ~v~~~~l~~ll~f~Yt-G~i~i~-~~~v~~ll~aA~~Lqi~~l-~~~~ 65 (73)
+-+|..++.||+|+-+ |++..+ ...+..+++-|++++|.++ ++.|
T Consensus 47 DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 47 DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 5689999999999999 788775 6778999999999999988 7766
No 16
>KOG1665|consensus
Probab=95.77 E-value=0.0095 Score=41.80 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=46.2
Q ss_pred hcCCCCHHHHHHHhHhhhcceEe-ecCCcHHHHHHHHhhcCcccccccccccccc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEVN-VSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 71 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i~-i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~~ 71 (73)
.+-+-+|.-|+.||+|.-.|++. .+.-++..+++.|.++||-++++..+.++++
T Consensus 55 ~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~~~~e 109 (302)
T KOG1665|consen 55 VLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLEDSRKE 109 (302)
T ss_pred EEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhhhccC
Confidence 56677899999999999999995 4567899999999999999999877776554
No 17
>KOG1724|consensus
Probab=95.51 E-value=0.0056 Score=40.21 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=42.6
Q ss_pred hcCCCCHHHHHHHhHhhhcceE-------------------------eecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEV-------------------------NVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i-------------------------~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
.+++|++.+|+.+|+|++-.+- .+..+.+.+++.||++|.|++|.+.|+..
T Consensus 47 Pl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~ 122 (162)
T KOG1724|consen 47 PLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKT 122 (162)
T ss_pred ccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 4678999999999999998652 23445789999999999999999987765
No 18
>KOG3473|consensus
Probab=93.50 E-value=0.077 Score=32.74 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=43.5
Q ss_pred eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhh-----hcce------EeecCCcHHHHHHHHhhcCc
Q psy14279 6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFM-----YAGE------VNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~-----YtG~------i~i~~~~v~~ll~aA~~Lqi 58 (73)
|.-|+=.|+||. .++++++..++.+.+|. |++. ..|+++-..++|.+|++|.+
T Consensus 36 AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 36 AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLEC 112 (112)
T ss_pred hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence 456888899998 67899999999999886 7776 35667778999999999863
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=92.52 E-value=0.039 Score=39.82 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHhhh-------hcC------CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 10 QFLEALFY-------VIM------DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 10 ~YFr~lf~-------~l~------~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
.||+..+. ..+ ..+..+|+=|++|+......++++|+-.++-.+++||+++|++.|=.+
T Consensus 28 ~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y 99 (317)
T PF11822_consen 28 RYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQY 99 (317)
T ss_pred HHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHH
Confidence 69998883 112 246789999999999999999999999999999999999999877544
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=91.58 E-value=0.25 Score=27.02 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=25.5
Q ss_pred eeCCHHHHHhhh---------hcCCCCHHHHHHHhHhhhc
Q psy14279 6 QFCHQFLEALFY---------VIMDKTFKHLTDILEFMYA 36 (73)
Q Consensus 6 Aa~S~YFr~lf~---------~l~~v~~~~l~~ll~f~Yt 36 (73)
|-.|+.++.|+. .++++++.+++.+++|++-
T Consensus 20 a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 20 AKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp HTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 447899999987 5789999999999999874
No 21
>KOG2838|consensus
Probab=91.12 E-value=0.045 Score=39.53 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred EEEeeCCHHHHHhhh-------hc--------------CCCCHHHH-HHHhHhhhcceEeecCC----------------
Q psy14279 3 SSEQFCHQFLEALFY-------VI--------------MDKTFKHL-TDILEFMYAGEVNVSQD---------------- 44 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------~l--------------~~v~~~~l-~~ll~f~YtG~i~i~~~---------------- 44 (73)
+|-||.|++||.++. +. .-|=|..+ ..++.|+||..+.++--
T Consensus 268 ai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAi 347 (401)
T KOG2838|consen 268 AIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAI 347 (401)
T ss_pred HHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHH
Confidence 356889999999987 11 11223333 45789999998864321
Q ss_pred ------------cHHHHHHHHhhcCcccccccccccc
Q psy14279 45 ------------QLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 45 ------------~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
...++++.|.+|.+.-+.++|+.++
T Consensus 348 tnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vi 384 (401)
T KOG2838|consen 348 TNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVI 384 (401)
T ss_pred HcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345777788888888888887764
No 22
>KOG0511|consensus
Probab=90.11 E-value=0.28 Score=36.88 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHhhh---------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcc
Q psy14279 10 QFLEALFY---------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59 (73)
Q Consensus 10 ~YFr~lf~---------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~ 59 (73)
.||+.||. .++.......+.++.|.|+.+..+.++-..+++-.|+.+.+.
T Consensus 314 eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 314 EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence 79999998 345567789999999999999999999999988888888654
No 23
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=85.35 E-value=0.11 Score=29.82 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=21.9
Q ss_pred ecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 41 VSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 41 i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
++.+.+.+++.||++|+|++|.+.|...
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~ 38 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKY 38 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 3566789999999999999999887644
No 24
>KOG2714|consensus
Probab=84.37 E-value=1.1 Score=33.80 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=45.8
Q ss_pred CHHHHHhhh------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHH-HHhhcCcccccc
Q psy14279 9 HQFLEALFY------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLK-TADRLKIKGLAE 63 (73)
Q Consensus 9 S~YFr~lf~------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~-aA~~Lqi~~l~~ 63 (73)
=.+|.+|+. .+-+=+|+.|.-||+|.=||++.++.-....++. -|.++++.++..
T Consensus 35 DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 35 DSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred chHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence 358888885 2235589999999999999999998777777777 899999998876
No 25
>KOG3840|consensus
Probab=82.96 E-value=1.5 Score=32.30 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=36.5
Q ss_pred hcCCCCHHHHHHHhHhhhcceEeecC-CcHHHHHHHHhhcCcc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEVNVSQ-DQLPSFLKTADRLKIK 59 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i~i~~-~~v~~ll~aA~~Lqi~ 59 (73)
.-.||+...|+.||||.-||.++-+. -.+.++-+|+++|-|+
T Consensus 143 VAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 143 VADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP 185 (438)
T ss_pred hhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence 44789999999999999999997755 4699999999999874
No 26
>KOG1987|consensus
Probab=79.33 E-value=0.33 Score=33.34 Aligned_cols=66 Identities=15% Similarity=0.019 Sum_probs=48.6
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHH---HHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLP---SFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~---~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
++++|.|+.|+.++. .+.+.++..++.+..|.|+..-.-..+... ..+.++...+.+.+...|.+.
T Consensus 117 ~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~ 196 (297)
T KOG1987|consen 117 LVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPV 196 (297)
T ss_pred eEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHH
Confidence 468899999999988 223778999999999999976544444443 666677777777777666553
No 27
>KOG2838|consensus
Probab=78.43 E-value=1.3 Score=32.23 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=41.5
Q ss_pred EEeeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcceEeecC---CcHHHHHHHHhhcCc
Q psy14279 4 SEQFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGEVNVSQ---DQLPSFLKTADRLKI 58 (73)
Q Consensus 4 VLAa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~i~i~~---~~v~~ll~aA~~Lqi 58 (73)
+||+..|+|+.+.. ..-|++-+.++.+|.+.|||+..... .|+.-+-+.+.-++.
T Consensus 148 ~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 148 FLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred HHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCC
Confidence 57788899987776 44678899999999999999997654 345555566665553
No 28
>KOG3713|consensus
Probab=60.92 E-value=14 Score=28.25 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhHhhhcceEeecCCc-HHHHHHHHhhcCccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQDQ-LPSFLKTADRLKIKG 60 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~~-v~~ll~aA~~Lqi~~ 60 (73)
+=+|..+..+++|.+||+++...+- ...+.+=.++++|+.
T Consensus 86 DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 86 DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDE 126 (477)
T ss_pred ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCCh
Confidence 4579999999999999999987764 555666677777754
No 29
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=12 Score=24.39 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=38.7
Q ss_pred hcCCCCHHHHHHHhHhhhcceEeecC-------------------------CcHHHHHHHHhhcCccccccccccc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEVNVSQ-------------------------DQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i~i~~-------------------------~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
..+.|.+.++..+++|+-..+-..++ +-+.++.-+|++|.++.+.+.|+..
T Consensus 42 p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKi 117 (158)
T COG5201 42 PAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKI 117 (158)
T ss_pred cccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHH
Confidence 35678899999999999765544333 2356777899999999999988754
No 30
>KOG2723|consensus
Probab=54.59 E-value=13 Score=25.62 Aligned_cols=46 Identities=7% Similarity=0.148 Sum_probs=37.6
Q ss_pred CHHHHHHHhHhhhcceEeecC--CcHHHHHHHHhhcCccccccccccc
Q psy14279 23 TFKHLTDILEFMYAGEVNVSQ--DQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 23 ~~~~l~~ll~f~YtG~i~i~~--~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
+-..|+-+++|+=|-++.++. .++..+..-|+++|+........|.
T Consensus 58 DG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 58 DGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred CcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 557899999999997777777 6789999999999999776654443
No 31
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=45.08 E-value=15 Score=19.01 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=28.4
Q ss_pred cCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCc
Q psy14279 19 IMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 19 l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi 58 (73)
.-|++..++...|. |.-.++++.-+.++++|..++-
T Consensus 8 ~agvS~~TVSr~ln----~~~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 8 EAGVSKSTVSRVLN----GPPRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHTSSHHHHHHHHT----TCSSSTHHHHHHHHHHHHHHTB
T ss_pred HHCcCHHHHHHHHh----CCCCCCHHHHHHHHHHHHHHCC
Confidence 34778877777666 7778899999999999988764
No 32
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=44.31 E-value=35 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCHHHHHHHhHhhhcceEe
Q psy14279 22 KTFKHLTDILEFMYAGEVN 40 (73)
Q Consensus 22 v~~~~l~~ll~f~YtG~i~ 40 (73)
++|+.+..+++.+..|+++
T Consensus 40 i~~~~l~~li~l~~~~~Is 58 (148)
T PF02637_consen 40 ISPEHLAELINLLEDGKIS 58 (148)
T ss_dssp STHHHHHHHHHHHHTTSSG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 8999999999999999764
No 33
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=43.25 E-value=8.1 Score=22.58 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=8.9
Q ss_pred HHHHHhHhhhcce
Q psy14279 26 HLTDILEFMYAGE 38 (73)
Q Consensus 26 ~l~~ll~f~YtG~ 38 (73)
++..=+|||||-.
T Consensus 66 tL~AHlDYIYTQ~ 78 (81)
T PF06404_consen 66 TLAAHLDYIYTQH 78 (81)
T ss_pred HHHHHhhheeccC
Confidence 3446689999853
No 34
>PF14823 Sirohm_synth_C: Sirohaem biosynthesis protein C-terminal; PDB: 1KYQ_B.
Probab=38.73 E-value=11 Score=21.39 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=18.3
Q ss_pred hcCCCCHHHHHHHhHhhhcceE
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEV 39 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i 39 (73)
.+..++.+.+..|++|.+.++.
T Consensus 46 ~l~~l~~~d~~~Ll~~y~~~~~ 67 (70)
T PF14823_consen 46 ELAELDDEDMENLLDFYWSNKV 67 (70)
T ss_dssp HGGGB-HHHHHHHHHHHHTTTT
T ss_pred HHHHCCHHHHHHHHHHhhccCC
Confidence 6788899999999999998864
No 35
>PF04195 Transposase_28: Putative gypsy type transposon; InterPro: IPR007321 This domain is found in a family of plant gene products and is thought to be related to gypsy type transposons. There is a domain of unknown function, (IPR007228 from INTERPRO), at the C terminus of the proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.46 E-value=42 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=25.5
Q ss_pred eCCHHHHHhhh----hcCCCCHHHHHHHhHhhhcc
Q psy14279 7 FCHQFLEALFY----VIMDKTFKHLTDILEFMYAG 37 (73)
Q Consensus 7 a~S~YFr~lf~----~l~~v~~~~l~~ll~f~YtG 37 (73)
-||++|+.++. .+..++|..+..|--|++-=
T Consensus 70 P~~~f~~~vL~~y~v~l~~L~Pnai~~laiF~~lc 104 (181)
T PF04195_consen 70 PCSPFLREVLRFYGVELPQLNPNAIARLAIFAWLC 104 (181)
T ss_pred CchHHHHHHHHHhCccccccChHHHHHHHHHHHHH
Confidence 47889988887 77889999999998887753
No 36
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=37.98 E-value=21 Score=22.20 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=18.8
Q ss_pred EeecCCcHHHHHHHHhhcCcccccc
Q psy14279 39 VNVSQDQLPSFLKTADRLKIKGLAE 63 (73)
Q Consensus 39 i~i~~~~v~~ll~aA~~Lqi~~l~~ 63 (73)
..++.+.+++++.+|..|+++.+.=
T Consensus 4 F~L~~edl~ql~kas~~l~l~dl~~ 28 (112)
T PF09116_consen 4 FELKAEDLQQLMKASRTLGLPDLCF 28 (112)
T ss_dssp EEE-HHHHHHHHHHHHHCT--EEEE
T ss_pred EEecHHHHHHHHHHHHhcCCCeEEE
Confidence 4678889999999999999998753
No 37
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=37.10 E-value=34 Score=17.01 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCc
Q psy14279 20 MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 20 ~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi 58 (73)
-|++..++..++. |+-.++++....+.+++..|+.
T Consensus 7 ~gvs~~tvs~~l~----g~~~vs~~~~~~i~~~~~~l~~ 41 (52)
T cd01392 7 AGVSVATVSRVLN----GKPRVSEETRERVLAAAEELGY 41 (52)
T ss_pred HCcCHHHHHHHHc----CCCCCCHHHHHHHHHHHHHhCC
Confidence 4678878777665 8778888888999999988876
No 38
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=35.18 E-value=17 Score=18.17 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=14.0
Q ss_pred hhcceEee----cCCcHHHHHHHHh
Q psy14279 34 MYAGEVNV----SQDQLPSFLKTAD 54 (73)
Q Consensus 34 ~YtG~i~i----~~~~v~~ll~aA~ 54 (73)
.|.|++.+ +++.+++++..|.
T Consensus 11 fY~G~V~Vfd~v~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 11 FYGGQVCVFDDVPPDKAQEIMLLAS 35 (36)
T ss_pred EECCEEEEeCCCCHHHHHHHHHHhc
Confidence 57888854 5566777776664
No 39
>PRK02853 hypothetical protein; Provisional
Probab=33.82 E-value=52 Score=21.75 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~ 59 (73)
|+--+.-+.|.+ =-.|++.+..+....++...+.|...
T Consensus 123 GiHNEgs~lL~e-RL~GKi~~D~dTARRLFTLICvLh~r 160 (161)
T PRK02853 123 GLHNEGSELLQE-RLEGKIEVDFDTARRLFTLICVLHWR 160 (161)
T ss_pred ccchHHHHHHHH-HHcCCeeechHHHHHHHHHHHhheec
Confidence 333333333333 34599999999999999998888765
No 40
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=32.63 E-value=29 Score=18.96 Aligned_cols=43 Identities=14% Similarity=0.378 Sum_probs=26.5
Q ss_pred HHHHhhhhcCCCCHHHHHHHhHhh--hcceEeecCCcHHHHHHHH
Q psy14279 11 FLEALFYVIMDKTFKHLTDILEFM--YAGEVNVSQDQLPSFLKTA 53 (73)
Q Consensus 11 YFr~lf~~l~~v~~~~l~~ll~f~--YtG~i~i~~~~v~~ll~aA 53 (73)
|...|++++..++.+-++.++.-. =.+....+.+.++++|..-
T Consensus 1 yI~gMLtN~gsl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 1 YIVGMLTNLGSLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRL 45 (60)
T ss_dssp HHHHHHHHH-SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHH
T ss_pred CHhHHhhcCCCCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHH
Confidence 556777777788888888888866 2344456666677666543
No 41
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=31.61 E-value=42 Score=18.30 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcc
Q psy14279 20 MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59 (73)
Q Consensus 20 ~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~ 59 (73)
-|++..++..++ .|+-.++++..+.+.+++..++-.
T Consensus 10 ~gvS~~TVSr~l----n~~~~v~~~t~~~i~~~~~~~gy~ 45 (70)
T smart00354 10 AGVSKATVSRVL----NGNGRVSEETREKVLAAMEELGYI 45 (70)
T ss_pred HCCCHHHHHHHH----CCCCCCCHHHHHHHHHHHHHhCCC
Confidence 478888887766 488888899999999999988863
No 42
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=30.69 E-value=56 Score=15.32 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.0
Q ss_pred hcCCCCHHHHHHHhHh
Q psy14279 18 VIMDKTFKHLTDILEF 33 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f 33 (73)
.++||.+.+-+.|++|
T Consensus 15 ~lpGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 15 KLPGIGPKTANAILSF 30 (30)
T ss_dssp TSTT-SHHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHhC
Confidence 6899999999998876
No 43
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=29.45 E-value=86 Score=18.14 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccc
Q psy14279 25 KHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA 62 (73)
Q Consensus 25 ~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~ 62 (73)
..++.+++++.-|.+.|+..+=.+++.+|-..++..+.
T Consensus 29 ~~~~~~~~~~~~~~lvIt~gdR~di~~~a~~~~i~~iI 66 (105)
T PF07085_consen 29 MSLSDFLEYLKPGDLVITPGDREDIQLAAIEAGIACII 66 (105)
T ss_dssp S-HHHHHHCHHTTEEEEEETT-HHHHHHHCCTTECEEE
T ss_pred CCHHHHHhhcCCCeEEEEeCCcHHHHHHHHHhCCCEEE
Confidence 34678889999999999977768888888877766654
No 44
>PRK10715 flk flagella biosynthesis regulator; Provisional
Probab=29.32 E-value=37 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=32.0
Q ss_pred eCCHHHHHhhh--hcCCCCHHHHHHHhHhhhcceEeecC
Q psy14279 7 FCHQFLEALFY--VIMDKTFKHLTDILEFMYAGEVNVSQ 43 (73)
Q Consensus 7 a~S~YFr~lf~--~l~~v~~~~l~~ll~f~YtG~i~i~~ 43 (73)
|-|+|.|.=|. .+...+++.++.++.++-.|++.|+.
T Consensus 113 avsdfirqqFG~t~L~~Lt~~QLqqvl~~Lq~gql~iPq 151 (335)
T PRK10715 113 AVSDFIRQQFGQTVLSQLSPEQLKQVLTLLQNGQLSIPQ 151 (335)
T ss_pred HHHHHHHHHhCcchHhhcCHHHHHHHHHHHHcCCcCCCC
Confidence 34678887777 88999999999999999999998865
No 45
>KOG2715|consensus
Probab=28.62 E-value=24 Score=23.99 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=38.4
Q ss_pred hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~ 64 (73)
.+-+=+|.-+.-+|+|.=.|++.++.-.=.-+|+-|++..++++++.
T Consensus 67 YlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~l 113 (210)
T KOG2715|consen 67 YLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQL 113 (210)
T ss_pred eEeccCcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHH
Confidence 45567899999999999999999988444448899999999877653
No 46
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=28.09 E-value=31 Score=19.65 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccc
Q psy14279 22 KTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKG 60 (73)
Q Consensus 22 v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~ 60 (73)
++.+....+.+ |-.++++.-++++++.+...+++.
T Consensus 18 ~s~e~a~~l~e----gL~nLrp~~lq~LL~~C~svKvkR 52 (69)
T PF11459_consen 18 QSFEEADELME----GLRNLRPRVLQELLEHCTSVKVKR 52 (69)
T ss_pred CCHHHHHHHHH----HHhhcCHHHHHHHHHHCccHHHHH
Confidence 34444444444 555666666666666666555443
No 47
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=27.93 E-value=47 Score=20.96 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=12.8
Q ss_pred hcCCCCHHHHHHHhHhhhc
Q psy14279 18 VIMDKTFKHLTDILEFMYA 36 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~Yt 36 (73)
-+.+.++.+...++||+|-
T Consensus 26 Gv~~yeprVv~qLLEfayR 44 (129)
T PF02291_consen 26 GVTEYEPRVVNQLLEFAYR 44 (129)
T ss_dssp T---B-THHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 4556788999999999975
No 48
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.82 E-value=47 Score=19.87 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRL 56 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~L 56 (73)
+++|++|+.++|.+ ++++.++.+-++|..-+.-
T Consensus 40 ~~dp~VFriildLL---~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 40 PMDPEVFRIILDLL---RLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred CcChHHHHHHHHHH---HcCCCHHHHHHHHHHHHcc
Confidence 46899999999985 4577788877777665443
No 49
>PF06793 UPF0262: Uncharacterised protein family (UPF0262); InterPro: IPR008321 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.39 E-value=53 Score=21.67 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.8
Q ss_pred hcceEeecCCcHHHHHHHHhhcCccc
Q psy14279 35 YAGEVNVSQDQLPSFLKTADRLKIKG 60 (73)
Q Consensus 35 YtG~i~i~~~~v~~ll~aA~~Lqi~~ 60 (73)
-.|++.+.-+....++..-+.|..++
T Consensus 133 L~GKi~~D~dTARRLFTLIcvLh~rG 158 (158)
T PF06793_consen 133 LEGKIEVDFDTARRLFTLICVLHWRG 158 (158)
T ss_pred hcCCcccChhhHHHHHHHhheeeecC
Confidence 35999999999999999888877653
No 50
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=26.47 E-value=94 Score=15.50 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=13.1
Q ss_pred HHHHHhhhhcCCCCHHHHHHHh
Q psy14279 10 QFLEALFYVIMDKTFKHLTDIL 31 (73)
Q Consensus 10 ~YFr~lf~~l~~v~~~~l~~ll 31 (73)
.|++..|..|++.+.+.++.++
T Consensus 15 ~yL~~vL~~i~~~~~~~~~~LL 36 (39)
T PF13817_consen 15 AYLTDVLERIPNHPANDIDELL 36 (39)
T ss_pred HHHHHHHHHHccCCHHHHHHhC
Confidence 3666666666666555555544
No 51
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=25.39 E-value=56 Score=22.04 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=31.0
Q ss_pred cCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCc
Q psy14279 19 IMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 19 l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi 58 (73)
.-|+|..+++..|+ |+-.++++.-+.++++|+.|+-
T Consensus 7 ~agVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~~lgY 42 (327)
T PRK10423 7 LAGVSTSTVSHVIN----KDRFVSEAITAKVEAAIKELNY 42 (327)
T ss_pred HhCCcHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCC
Confidence 45889999999885 7778999999999999999874
No 52
>PF14178 YppF: YppF-like protein
Probab=25.33 E-value=68 Score=17.86 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=22.4
Q ss_pred HHHHhhhhcCCCCHHHHHHHhHhhh----cceEeecC
Q psy14279 11 FLEALFYVIMDKTFKHLTDILEFMY----AGEVNVSQ 43 (73)
Q Consensus 11 YFr~lf~~l~~v~~~~l~~ll~f~Y----tG~i~i~~ 43 (73)
+.+..|....+-.|..+..|+||+= -|++.|++
T Consensus 5 eLk~~F~~~k~y~p~~~NeLLDFar~~Yi~gei~i~e 41 (60)
T PF14178_consen 5 ELKQKFMQKKKYEPEDMNELLDFARKLYIQGEISINE 41 (60)
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCcccHHH
Confidence 3455566677788889999999863 35555543
No 53
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=25.31 E-value=50 Score=22.33 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.6
Q ss_pred cCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcc
Q psy14279 19 IMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59 (73)
Q Consensus 19 l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~ 59 (73)
.-|+|..++..+|+ |.-.++++.-+.++++|..|+-.
T Consensus 10 ~agvS~~TVSrvLn----~~~~vs~~tr~rV~~~a~~lgY~ 46 (329)
T TIGR01481 10 EAGVSMATVSRVVN----GNPNVKPATRKKVLEVIKRLDYR 46 (329)
T ss_pred HhCCCHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCCC
Confidence 45899999988885 77789999999999999999853
No 54
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=25.28 E-value=62 Score=24.55 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=20.1
Q ss_pred eCCHHHHHhhhhcCCCCHHHHHHHhHh
Q psy14279 7 FCHQFLEALFYVIMDKTFKHLTDILEF 33 (73)
Q Consensus 7 a~S~YFr~lf~~l~~v~~~~l~~ll~f 33 (73)
..|||||+.|.. .++.|+.++.+-|.
T Consensus 40 eNsPfYr~~f~~-~~v~p~~i~~l~Dl 65 (438)
T COG1541 40 ENSPFYRKKFKE-AGVDPDDIKTLEDL 65 (438)
T ss_pred hcCHHHHHHHHH-cCCChHHhhCHHHH
Confidence 479999999974 37888777766665
No 55
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=24.74 E-value=82 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=16.7
Q ss_pred CHHHHHHHhHhhhcceEee
Q psy14279 23 TFKHLTDILEFMYAGEVNV 41 (73)
Q Consensus 23 ~~~~l~~ll~f~YtG~i~i 41 (73)
++..+..+.+++|.|++.+
T Consensus 50 ~~~Dl~~~~~eiy~GNIvI 68 (124)
T COG2450 50 SYEDLEEAKREIYAGNIVI 68 (124)
T ss_pred CHHHHHHHHHHHhcCCEEE
Confidence 5788999999999999865
No 56
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=24.30 E-value=1e+02 Score=17.31 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=19.7
Q ss_pred cceEeecCCcHHHHHHHH-hhcCcc
Q psy14279 36 AGEVNVSQDQLPSFLKTA-DRLKIK 59 (73)
Q Consensus 36 tG~i~i~~~~v~~ll~aA-~~Lqi~ 59 (73)
.|++-.-++++++++..| ..|++.
T Consensus 18 ~GKvi~lP~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 18 AGKVIWLPDSLEELLKIASEKFGFS 42 (69)
T ss_pred CCEEEEcCccHHHHHHHHHHHhCCC
Confidence 388888899999999877 677774
No 57
>PF15125 TMEM238: TMEM238 protein family
Probab=24.15 E-value=20 Score=20.27 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=9.7
Q ss_pred hhhcceEeecCCc
Q psy14279 33 FMYAGEVNVSQDQ 45 (73)
Q Consensus 33 f~YtG~i~i~~~~ 45 (73)
|=|||++.++++.
T Consensus 52 ~WYtgNIe~~~ee 64 (65)
T PF15125_consen 52 FWYTGNIEVSPEE 64 (65)
T ss_pred HHHhcCCcCChhh
Confidence 4589998877764
No 58
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=24.08 E-value=56 Score=21.19 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=18.1
Q ss_pred hcCCCCHHHHHHHhHhhhcceE
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEV 39 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i 39 (73)
.++.++.+....|..|+|-|=-
T Consensus 94 ~v~~L~~~~~D~LMKYiYkg~~ 115 (152)
T PF04699_consen 94 AVKSLDSDQQDILMKYIYKGME 115 (152)
T ss_dssp HHCCS-HHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHhHHHHHHHHhcc
Confidence 5678899999999999999843
No 59
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=24.06 E-value=61 Score=21.54 Aligned_cols=17 Identities=12% Similarity=-0.164 Sum_probs=10.0
Q ss_pred CeEEEeeCCHHHHHhhh
Q psy14279 1 MVSSEQFCHQFLEALFY 17 (73)
Q Consensus 1 ~~~VLAa~S~YFr~lf~ 17 (73)
|=+|||+.||.=|.++.
T Consensus 1 M~iILaS~SprR~elL~ 17 (195)
T PF02545_consen 1 MRIILASSSPRRRELLK 17 (195)
T ss_dssp --EEE----HHHHHHHH
T ss_pred CCEEEeCCCHHHHHHHH
Confidence 67899999999998887
No 60
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=23.63 E-value=61 Score=22.20 Aligned_cols=37 Identities=5% Similarity=0.123 Sum_probs=31.6
Q ss_pred hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi 58 (73)
..-|+|..++..+|+ |+-.|+++.-+.++++|+.|+-
T Consensus 9 ~~aGVS~~TVSrvLn----~~~~Vs~~tr~rV~~~a~elgY 45 (343)
T PRK10727 9 RLAGVSVATVSRVIN----NSPKASEASRLAVHSAMESLSY 45 (343)
T ss_pred HHhCCCHHHHHHHhC----CCCCCCHHHHHHHHHHHHHHCC
Confidence 345899999988885 7778999999999999999985
No 61
>PF14923 CCDC142: Coiled-coil protein 142
Probab=22.84 E-value=81 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=20.5
Q ss_pred HHHHHHHhHhhhcceEeecCCcHHHHH
Q psy14279 24 FKHLTDILEFMYAGEVNVSQDQLPSFL 50 (73)
Q Consensus 24 ~~~l~~ll~f~YtG~i~i~~~~v~~ll 50 (73)
...++.-+||||+.+|+.+.....++.
T Consensus 310 ~a~~eAWLdhIl~~kIKFS~~GAlQL~ 336 (450)
T PF14923_consen 310 TAMLEAWLDHILMHKIKFSLQGALQLR 336 (450)
T ss_pred HHHHHHHHHHHHHccceeeHHHHHHHH
Confidence 345677889999999999886655543
No 62
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=22.64 E-value=1.3e+02 Score=17.65 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=20.2
Q ss_pred CHHHHHhhh---------hcCCCCHHHHHHHhHhhhcc
Q psy14279 9 HQFLEALFY---------VIMDKTFKHLTDILEFMYAG 37 (73)
Q Consensus 9 S~YFr~lf~---------~l~~v~~~~l~~ll~f~YtG 37 (73)
=.+|+.++. .++-.+.+.++.++||+-+.
T Consensus 42 ~~~fk~~l~~~sv~rpp~~~~iFs~~~~~~i~~y~~~t 79 (101)
T PF14769_consen 42 FKYFKELLLRHSVQRPPFSIGIFSVDQVKAIIDYFHNT 79 (101)
T ss_pred HHHHHHHHHHhccCCCCcccCcCCHHHHHHHHHHHHHH
Confidence 356766664 23347889999999998664
No 63
>KOG0511|consensus
Probab=21.22 E-value=30 Score=26.39 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=40.0
Q ss_pred EeeCCHHHHHhhh-------hc--CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccc
Q psy14279 5 EQFCHQFLEALFY-------VI--MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA 62 (73)
Q Consensus 5 LAa~S~YFr~lf~-------~l--~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~ 62 (73)
|+|.|.||..-+. ++ ..+-++.+..++.|.|-..=.+-+++-.++++....|++..+.
T Consensus 169 l~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 169 LEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKFSKEKLS 235 (516)
T ss_pred HHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhccHHHhH
Confidence 5666666644333 22 2356788999999999874455566678888888888877654
No 64
>PRK00078 Maf-like protein; Reviewed
Probab=21.19 E-value=94 Score=20.61 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=15.0
Q ss_pred CeEEEeeCCHHHHHhhh
Q psy14279 1 MVSSEQFCHQFLEALFY 17 (73)
Q Consensus 1 ~~~VLAa~S~YFr~lf~ 17 (73)
|-+|||+.||.=+.++.
T Consensus 1 ~~iILAS~SprR~elL~ 17 (192)
T PRK00078 1 MKIILASASERRQELLK 17 (192)
T ss_pred CcEEEeCCCHHHHHHHH
Confidence 56899999999998887
No 65
>PF12542 CWC25: Pre-mRNA splicing factor; InterPro: IPR022209 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF10197 from PFAM. There is a single completely conserved residue Y that may be functionally important. Cwc25 has been identified to associate with pre-mRNA splicing factor Cef1/Ntc85, a component of the Prp19-associated complex (NTC) involved in spliceosome activation. Cwc25 is neither tightly associated with NTC nor required for spliceosome activation, but is required for the first catalytic reaction.
Probab=20.26 E-value=33 Score=20.01 Aligned_cols=9 Identities=56% Similarity=1.021 Sum_probs=7.6
Q ss_pred hHhhhcceE
Q psy14279 31 LEFMYAGEV 39 (73)
Q Consensus 31 l~f~YtG~i 39 (73)
|+|||.|..
T Consensus 7 LeWMY~~~~ 15 (96)
T PF12542_consen 7 LEWMYEGPP 15 (96)
T ss_pred ccccccCCc
Confidence 789999984
Done!