Query psy14279
Match_columns 73
No_of_seqs 132 out of 1042
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 15:46:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihc_A Transcription regulator 99.8 9.6E-20 3.3E-24 111.2 3.8 68 3-70 46-123 (124)
2 3ohu_A Transcription regulator 99.8 1.1E-19 3.8E-24 110.6 3.9 66 3-68 49-124 (125)
3 3b84_A Zinc finger and BTB dom 99.8 2.2E-20 7.5E-25 113.4 0.3 68 3-70 41-115 (119)
4 3ga1_A Nucleus accumbens-assoc 99.8 1.3E-19 4.3E-24 111.2 3.4 68 3-70 50-125 (129)
5 2q81_A MIZ-1 protein; BTB/POZ 99.8 3.7E-20 1.3E-24 112.4 0.8 67 3-69 44-116 (119)
6 2yy9_A Zinc finger and BTB dom 99.8 5.1E-20 1.8E-24 114.1 -0.2 67 3-69 42-115 (135)
7 1r29_A B-cell lymphoma 6 prote 99.8 8.7E-20 3E-24 111.4 0.8 69 3-71 46-125 (127)
8 2vpk_A Myoneurin; transcriptio 99.8 1.3E-19 4.5E-24 109.1 1.3 67 3-69 39-114 (116)
9 1buo_A POZ domain, protein (pr 99.8 5.8E-20 2E-24 111.7 -0.4 67 3-69 45-117 (121)
10 2ppi_A Gigaxonin; BTB domain, 99.7 1.7E-19 6E-24 113.0 1.8 67 3-69 64-143 (144)
11 2z8h_A Transcription regulator 99.7 1.8E-19 6E-24 111.8 1.5 68 3-70 53-130 (138)
12 3m5b_A Zinc finger and BTB dom 99.7 6.8E-20 2.3E-24 112.2 -0.8 69 3-71 47-117 (119)
13 2if5_A Zinc finger and BTB dom 99.7 1.6E-19 5.4E-24 109.1 0.7 66 3-68 42-118 (120)
14 2vkp_A BTB/POZ domain-containi 99.7 2.3E-19 8E-24 106.5 0.7 67 3-69 29-105 (109)
15 3fkc_A Transcriptional regulat 99.7 1.7E-18 5.7E-23 105.0 0.3 61 3-63 48-115 (116)
16 4eoz_A Speckle-type POZ protei 99.7 7.2E-18 2.5E-22 103.8 1.2 68 3-70 42-120 (145)
17 3hve_A Gigaxonin; ubiquitin, c 99.7 9.1E-18 3.1E-22 112.2 1.0 66 3-68 48-126 (256)
18 3htm_A Speckle-type POZ protei 99.6 1.5E-17 5.2E-22 104.8 0.1 67 3-69 51-128 (172)
19 3i3n_A Kelch-like protein 11; 99.6 1.9E-17 6.4E-22 112.0 -0.3 66 3-68 52-134 (279)
20 3hqi_A Speckle-type POZ protei 99.5 4E-16 1.4E-20 106.6 -1.2 67 3-69 191-268 (312)
21 2ast_A S-phase kinase-associat 99.3 2.9E-13 9.9E-18 86.3 0.7 63 6-68 20-121 (159)
22 4ajy_C Transcription elongatio 99.2 1.6E-11 5.6E-16 72.6 4.0 53 6-58 21-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 6.1E-11 2.1E-15 74.4 1.2 63 6-68 21-116 (141)
24 2p1m_A SKP1-like protein 1A; F 99.0 3.2E-11 1.1E-15 77.0 -0.8 63 6-68 23-120 (160)
25 2fnj_C Transcription elongatio 98.3 7E-07 2.4E-11 52.6 3.8 53 6-58 20-96 (96)
26 1hv2_A Elongin C, ELC1; protei 98.1 1.5E-06 5.2E-11 51.5 2.3 53 6-58 23-99 (99)
27 3v7d_A Suppressor of kinetocho 98.0 1.8E-06 6.2E-11 55.5 1.4 63 6-68 26-128 (169)
28 1vcb_B Protein (elongin C); tu 97.6 2.1E-05 7.2E-10 47.6 1.8 53 6-58 36-112 (112)
29 3drz_A BTB/POZ domain-containi 97.2 0.00012 4.3E-09 43.5 1.9 49 21-69 55-104 (107)
30 1s1g_A Potassium voltage-gated 95.7 0.01 3.5E-07 36.3 3.5 46 21-66 58-105 (124)
31 2nz0_B Potassium voltage-gated 95.7 0.014 4.9E-07 36.3 4.0 46 21-66 80-127 (140)
32 1nn7_A Potassium channel KV4.2 94.7 0.016 5.6E-07 34.2 2.1 46 21-66 45-92 (105)
33 3drx_A BTB/POZ domain-containi 94.6 0.0065 2.2E-07 40.2 0.2 48 21-68 61-109 (202)
34 3kvt_A Potassium channel prote 94.4 0.023 8E-07 34.1 2.4 46 21-66 51-98 (115)
35 1t1d_A Protein (potassium chan 92.8 0.057 2E-06 31.7 2.1 41 21-61 47-89 (100)
36 2rbg_A Putative uncharacterize 83.1 4 0.00014 24.9 5.5 61 10-70 19-99 (126)
37 2r9r_B Paddle chimera voltage 79.3 1.7 5.7E-05 31.7 3.4 42 21-62 98-141 (514)
38 1pd7_B MAD1; PAH2, SIN3, eukar 62.2 3.7 0.00013 18.6 1.2 14 44-57 3-16 (26)
39 4h63_H Mediator of RNA polymer 59.5 4.5 0.00015 26.4 1.8 15 24-38 185-199 (200)
40 2eqx_A Kelch repeat and BTB do 56.0 2.7 9.2E-05 24.0 0.2 34 36-69 3-36 (105)
41 1uxc_A FRUR (1-57), fructose r 54.2 8.6 0.00029 20.3 2.1 37 19-59 9-48 (65)
42 3g7p_A Nitrogen fixation prote 35.8 32 0.0011 21.7 2.9 17 1-17 8-24 (156)
43 2ltm_A NFU1 iron-sulfur cluste 41.5 8 0.00027 22.9 0.0 37 6-42 46-105 (107)
44 2l8n_A Transcriptional repress 34.7 16 0.00056 19.3 1.2 38 18-59 17-54 (67)
45 3c0t_B Mediator of RNA polymer 29.5 29 0.00099 16.0 1.4 15 25-39 8-22 (33)
46 2hzs_I RNA polymerase II media 28.0 26 0.0009 15.5 1.1 13 27-39 9-21 (27)
47 1taf_A TFIID TBP associated fa 26.8 31 0.0011 18.6 1.5 19 18-36 15-33 (68)
48 1p3q_Q VPS9P, vacuolar protein 23.1 77 0.0026 16.4 2.6 26 19-45 23-48 (54)
49 4gwp_C Mediator of RNA polymer 23.0 17 0.00057 26.3 -0.1 19 22-40 193-211 (407)
50 2ltl_A NIFU-like protein, mito 28.3 18 0.00062 21.7 0.0 35 8-42 60-117 (119)
51 1ldd_A APC2WHB, anaphase promo 21.6 64 0.0022 17.7 2.2 46 8-53 9-57 (74)
52 1qpz_A PURA, protein (purine n 20.3 48 0.0016 21.5 1.7 36 19-58 9-44 (340)
No 1
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.78 E-value=9.6e-20 Score=111.22 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=63.0
Q ss_pred EEEeeCCHHHHHhhh---------hc-CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY---------VI-MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 70 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~---------~l-~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~ 70 (73)
+||||+||||++||. .+ .++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++..+
T Consensus 46 ~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 46 SVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 479999999999998 46 589999999999999999999999999999999999999999999998653
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.78 E-value=1.1e-19 Score=110.64 Aligned_cols=66 Identities=15% Similarity=0.333 Sum_probs=62.2
Q ss_pred EEEeeCCHHHHHhhh---------hcCC-CCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY---------VIMD-KTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~---------~l~~-v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
+|||++|+|||+||. .+++ +++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++.
T Consensus 49 ~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 49 AVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 478999999999997 5677 99999999999999999999999999999999999999999999874
No 3
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.77 E-value=2.2e-20 Score=113.40 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=63.6
Q ss_pred EEEeeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 70 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~ 70 (73)
+||||+||||++||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus 41 ~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (119)
T 3b84_A 41 SVLACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKP 115 (119)
T ss_dssp HHHHHHCHHHHHHHTTTTCCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred HHHhhcCHHHHHHHCCCCCCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 478999999999997 68899999999999999999999999999999999999999999999998743
No 4
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=111.19 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=59.5
Q ss_pred EEEeeCCHHHHHhhh-------hcC-CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-------VIM-DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 70 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------~l~-~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~ 70 (73)
+|||++|+||++||. .++ ++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus 50 ~vLaa~S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~ 125 (129)
T 3ga1_A 50 AVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFL 125 (129)
T ss_dssp HHHHHHBHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC------
T ss_pred HHHHHcCHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 479999999999998 676 99999999999999999999999999999999999999999999998744
No 5
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.77 E-value=3.7e-20 Score=112.40 Aligned_cols=67 Identities=21% Similarity=0.376 Sum_probs=63.2
Q ss_pred EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+|||++||||++||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|++..
T Consensus 44 ~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l 116 (119)
T 2q81_A 44 AVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALK 116 (119)
T ss_dssp HHHHHHCHHHHHHHHHCCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 478999999999998 6789999999999999999999999999999999999999999999998753
No 6
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.75 E-value=5.1e-20 Score=114.13 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=63.5
Q ss_pred EEEeeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+||||+|+||++||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++..
T Consensus 42 ~vLaa~S~yF~~mf~~~~~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l 115 (135)
T 2yy9_A 42 SVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQ 115 (135)
T ss_dssp HHHHHHCHHHHHTCC----CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHhCHHHHHHHcCCCCCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 479999999999997 6889999999999999999999999999999999999999999999998874
No 7
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.75 E-value=8.7e-20 Score=111.35 Aligned_cols=69 Identities=16% Similarity=0.326 Sum_probs=64.5
Q ss_pred EEEeeCCHHHHHhhh----------hc-CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY----------VI-MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 71 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~----------~l-~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~~ 71 (73)
+|||++||||++||. .+ +++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++...+
T Consensus 46 ~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 46 TVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 478999999999997 57 8999999999999999999999999999999999999999999999987544
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.3e-19 Score=109.10 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=62.7
Q ss_pred EEEeeCCHHHHHhhh-------hcC--CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-------VIM--DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------~l~--~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
.|||++||||++||. .++ ++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++..
T Consensus 39 ~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l 114 (116)
T 2vpk_A 39 NVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKM 114 (116)
T ss_dssp HHHHHHCHHHHHHHTTCCCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHcCCCCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 478999999999997 466 9999999999999999999999999999999999999999999998754
No 9
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.75 E-value=5.8e-20 Score=111.67 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=63.6
Q ss_pred EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+|||++||||++||. .++++++++++.+++|+|||++.++++++.+++.+|++|+++++.+.|++..
T Consensus 45 ~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l 117 (121)
T 1buo_A 45 TVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 117 (121)
T ss_dssp HHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHcCCCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 478999999999998 7899999999999999999999999999999999999999999999998764
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.75 E-value=1.7e-19 Score=113.01 Aligned_cols=67 Identities=12% Similarity=0.299 Sum_probs=62.8
Q ss_pred EEEeeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+||||+|||||+||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|++..
T Consensus 64 ~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 64 NILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 479999999999996 6789999999999999999999999999999999999999999999998753
No 11
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.75 E-value=1.8e-19 Score=111.77 Aligned_cols=68 Identities=16% Similarity=0.339 Sum_probs=63.1
Q ss_pred EEEeeCCHHHHHhhh---------hc-CCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY---------VI-MDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 70 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~---------~l-~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~ 70 (73)
+||||+||||++||. .+ .+++++.++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus 53 ~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 130 (138)
T 2z8h_A 53 SVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLK 130 (138)
T ss_dssp HHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTT
T ss_pred HHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 479999999999998 45 489999999999999999999999999999999999999999999988743
No 12
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.74 E-value=6.8e-20 Score=112.17 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=62.0
Q ss_pred EEEeeCCHHHHHhhh--hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY--VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 71 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~--~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~~ 71 (73)
+||||+|+||++.=. .++++++++++.+|+|+|||++.++.+|+.+++.+|++||++++.+.|++..+.
T Consensus 47 ~vLaa~S~yF~~~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 47 LVLAGVSQQLGRRGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHTTCGGGCCCEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHcCHHHhcCCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 479999999986322 789999999999999999999999999999999999999999999999987653
No 13
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.74 E-value=1.6e-19 Score=109.12 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=62.3
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
+|||++||||++||. .++++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++.
T Consensus 42 ~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~ 118 (120)
T 2if5_A 42 SVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADL 118 (120)
T ss_dssp HHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 478999999999997 678999999999999999999999999999999999999999999999864
No 14
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.74 E-value=2.3e-19 Score=106.51 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=63.0
Q ss_pred EEEeeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
.|||++||||++||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++..
T Consensus 29 ~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l 105 (109)
T 2vkp_A 29 YVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFL 105 (109)
T ss_dssp HHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 478999999999997 6789999999999999999999999999999999999999999999998763
No 15
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.69 E-value=1.7e-18 Score=105.05 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=57.6
Q ss_pred EEEeeCCHHHHHhhh------hcCCCCHHHHHHHhHhhhcceE-eecCCcHHHHHHHHhhcCcccccc
Q psy14279 3 SSEQFCHQFLEALFY------VIMDKTFKHLTDILEFMYAGEV-NVSQDQLPSFLKTADRLKIKGLAE 63 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~------~l~~v~~~~l~~ll~f~YtG~i-~i~~~~v~~ll~aA~~Lqi~~l~~ 63 (73)
+|||++||||++||. .++++++++++.+++|+|||++ .++++++.+++.+|++|+++++.+
T Consensus 48 ~vLaa~S~~F~~~f~~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 48 NILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 478999999999998 7899999999999999999999 799999999999999999998875
No 16
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.67 E-value=7.2e-18 Score=103.79 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=62.9
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 70 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~~ 70 (73)
.|||++|+||++||. .++++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++...
T Consensus 42 ~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 120 (145)
T 4eoz_A 42 AILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC 120 (145)
T ss_dssp HHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC--
T ss_pred HHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 478999999999997 67899999999999999999999999999999999999999999999998743
No 17
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.66 E-value=9.1e-18 Score=112.23 Aligned_cols=66 Identities=12% Similarity=0.295 Sum_probs=60.7
Q ss_pred EEEeeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
+|||++||||++||. .++++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|++.
T Consensus 48 ~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~ 126 (256)
T 3hve_A 48 NILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEF 126 (256)
T ss_dssp HHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHH
Confidence 478999999999995 578999999999999999999999999999999999999999999999875
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.5e-17 Score=104.81 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=62.9
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
.|||++||||++||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++.+.|++..
T Consensus 51 ~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 128 (172)
T 3htm_A 51 AILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL 128 (172)
T ss_dssp HHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 478999999999997 6789999999999999999999999999999999999999999999998763
No 19
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.63 E-value=1.9e-17 Score=112.01 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=62.1
Q ss_pred EEEeeCCHHHHHhhh-----------hcC------CCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIM------DKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAP 65 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~------~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~ 65 (73)
+|||++||||++||. .++ ++++++++.+++|+|||++.++.+++.+++.+|++|+++++.+.|
T Consensus 52 ~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c 131 (279)
T 3i3n_A 52 SVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFC 131 (279)
T ss_dssp HHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHH
Confidence 479999999999997 566 899999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy14279 66 QSS 68 (73)
Q Consensus 66 ~~~ 68 (73)
++.
T Consensus 132 ~~~ 134 (279)
T 3i3n_A 132 GEF 134 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.53 E-value=4e-16 Score=106.57 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=62.9
Q ss_pred EEEeeCCHHHHHhhh-----------hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 3 SSEQFCHQFLEALFY-----------VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 3 ~VLAa~S~YFr~lf~-----------~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+||||+||||++||. .++++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+.+.|++..
T Consensus 191 ~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 268 (312)
T 3hqi_A 191 AILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL 268 (312)
T ss_dssp HHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 479999999999997 6889999999999999999999999999999999999999999999998763
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.30 E-value=2.9e-13 Score=86.29 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=58.6
Q ss_pred eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcce--------------------------EeecCCcH
Q psy14279 6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGE--------------------------VNVSQDQL 46 (73)
Q Consensus 6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~--------------------------i~i~~~~v 46 (73)
|++|+|||+||. .+++|++.+|+.+++|+|+++ +.++.+++
T Consensus 20 A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l 99 (159)
T 2ast_A 20 AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTL 99 (159)
T ss_dssp HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHH
T ss_pred HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHH
Confidence 789999999996 567999999999999999999 88999999
Q ss_pred HHHHHHHhhcCccccccccccc
Q psy14279 47 PSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 47 ~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
.+++.||++|+|++|.+.|...
T Consensus 100 ~eLl~AAnyL~I~~Lld~~c~~ 121 (159)
T 2ast_A 100 FELILAANYLDIKGLLDVTCKT 121 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999998765
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.18 E-value=1.6e-11 Score=72.65 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=48.8
Q ss_pred eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhh-----c---ceEe---ecCCcHHHHHHHHhhcCc
Q psy14279 6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMY-----A---GEVN---VSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~Y-----t---G~i~---i~~~~v~~ll~aA~~Lqi 58 (73)
|++|+|||+||. .+++|++.+|+.+++|+| + +++. ++++++.+++.||++|+.
T Consensus 21 A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 21 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 97 (97)
T ss_dssp HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhCC
Confidence 789999999996 478999999999999999 5 7887 999999999999999973
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.01 E-value=6.1e-11 Score=74.39 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=58.0
Q ss_pred eeCCHHHHHhhh-------hcCCCCHHHHHHHhHhhhcce--------------------------EeecCCcHHHHHHH
Q psy14279 6 QFCHQFLEALFY-------VIMDKTFKHLTDILEFMYAGE--------------------------VNVSQDQLPSFLKT 52 (73)
Q Consensus 6 Aa~S~YFr~lf~-------~l~~v~~~~l~~ll~f~YtG~--------------------------i~i~~~~v~~ll~a 52 (73)
|.+|+|||+||. .+++|++.+|+.+++|+|.++ +.++.+++.+++.|
T Consensus 21 A~~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~A 100 (141)
T 1fs1_B 21 AKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILA 100 (141)
T ss_dssp GGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHH
Confidence 789999999995 678999999999999999987 67888999999999
Q ss_pred HhhcCccccccccccc
Q psy14279 53 ADRLKIKGLAEAPQSS 68 (73)
Q Consensus 53 A~~Lqi~~l~~~~~~~ 68 (73)
|++|+|++|.+.|...
T Consensus 101 AnyL~I~~Lldl~c~~ 116 (141)
T 1fs1_B 101 ANYLDIKGLLDVTCKT 116 (141)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 9999999999988764
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.98 E-value=3.2e-11 Score=77.02 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=41.0
Q ss_pred eeCCHHHHHhhh--------hcCCCCHHHHHHHhHhhhcce---------------------------EeecCCcHHHHH
Q psy14279 6 QFCHQFLEALFY--------VIMDKTFKHLTDILEFMYAGE---------------------------VNVSQDQLPSFL 50 (73)
Q Consensus 6 Aa~S~YFr~lf~--------~l~~v~~~~l~~ll~f~YtG~---------------------------i~i~~~~v~~ll 50 (73)
|.+|+|||.||. .+++|++.+|+.+++|+|.++ +.++.+++.+++
T Consensus 23 A~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi 102 (160)
T 2p1m_A 23 ALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELI 102 (160)
T ss_dssp HHTCTTTC------------CCTTSCHHHHHHHHHC------------------------------------------CH
T ss_pred HHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHH
Confidence 789999999997 678999999999999999997 578999999999
Q ss_pred HHHhhcCccccccccccc
Q psy14279 51 KTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 51 ~aA~~Lqi~~l~~~~~~~ 68 (73)
.||++|+|++|.+.|...
T Consensus 103 ~AAnyL~I~~Lldl~c~~ 120 (160)
T 2p1m_A 103 LAANYLNIKNLLDLTCQT 120 (160)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 999999999999988765
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.28 E-value=7e-07 Score=52.63 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=47.3
Q ss_pred eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcce-----------EeecCCcHHHHHHHHhhcCc
Q psy14279 6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGE-----------VNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~-----------i~i~~~~v~~ll~aA~~Lqi 58 (73)
|.+|+++|.|+. .+++|++.+|+.+++|+|..+ -.++.+.+.+++.||++|+|
T Consensus 20 A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 20 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 679999999996 578999999999999999875 36888999999999999986
No 26
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.08 E-value=1.5e-06 Score=51.49 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=46.6
Q ss_pred eeCCHHHHHhhh----------hcCCCCHHHHHHHhHhhhcce--------------EeecCCcHHHHHHHHhhcCc
Q psy14279 6 QFCHQFLEALFY----------VIMDKTFKHLTDILEFMYAGE--------------VNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 6 Aa~S~YFr~lf~----------~l~~v~~~~l~~ll~f~YtG~--------------i~i~~~~v~~ll~aA~~Lqi 58 (73)
|.+|+++|.|+. .+++|++.+++.+++|+|..+ -.++.+.+.+++.||++|+|
T Consensus 23 A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 23 AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 679999999994 678999999999999999876 25677789999999999986
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=97.98 E-value=1.8e-06 Score=55.46 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=53.3
Q ss_pred eeCCHHHHHhhh---------------hcCCCCHHHHHHHhHhhhcce-------------------------EeecCCc
Q psy14279 6 QFCHQFLEALFY---------------VIMDKTFKHLTDILEFMYAGE-------------------------VNVSQDQ 45 (73)
Q Consensus 6 Aa~S~YFr~lf~---------------~l~~v~~~~l~~ll~f~YtG~-------------------------i~i~~~~ 45 (73)
|.+|.++|.|+. .|++|++.+|+.+++|++..+ +.++.+.
T Consensus 26 A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~ 105 (169)
T 3v7d_A 26 AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEM 105 (169)
T ss_dssp HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHH
T ss_pred HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHH
Confidence 568999999985 368999999999999998764 3466677
Q ss_pred HHHHHHHHhhcCccccccccccc
Q psy14279 46 LPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 46 v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
+.+++.||++|+|++|.+.++..
T Consensus 106 LfeLi~AAnyLdIk~Lldl~c~~ 128 (169)
T 3v7d_A 106 LYEIILAANYLNIKPLLDAGCKV 128 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHH
Confidence 89999999999999999987654
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.61 E-value=2.1e-05 Score=47.58 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=45.9
Q ss_pred eeCCHHHHHhhh-------------hcCCCCHHHHHHHhHhhhcce-----------EeecCCcHHHHHHHHhhcCc
Q psy14279 6 QFCHQFLEALFY-------------VIMDKTFKHLTDILEFMYAGE-----------VNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 6 Aa~S~YFr~lf~-------------~l~~v~~~~l~~ll~f~YtG~-----------i~i~~~~v~~ll~aA~~Lqi 58 (73)
|.+|+.+|.|+. .|++|+..+|+.+++|++..+ -.++.+.+.+++.||++|+|
T Consensus 36 A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 36 ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 568999999985 567999999999999998765 25777889999999999986
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.23 E-value=0.00012 Score=43.49 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=43.0
Q ss_pred CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccccccccccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+-+|..++.||+|+.+|++.++.+ ....+++-|.+++|.++++.|++.+
T Consensus 55 DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i 104 (107)
T 3drz_A 55 DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 104 (107)
T ss_dssp CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 569999999999999999988664 3578999999999999999988754
No 30
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.72 E-value=0.01 Score=36.26 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccc-ccccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGL-AEAPQ 66 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l-~~~~~ 66 (73)
+=+|..|+.||+|+-+|++.++.+ .+..+++-|.+++|.++ .+.|+
T Consensus 58 DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 58 DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGGBCHHH
T ss_pred cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence 458999999999999999988765 48999999999999886 45543
No 31
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.65 E-value=0.014 Score=36.34 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccc-ccccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGL-AEAPQ 66 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l-~~~~~ 66 (73)
|=++..|+.||+|+-+|++.++.+ .+..+++-|++++|..+ .+.|+
T Consensus 80 DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~l~~CC 127 (140)
T 2nz0_B 80 DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC 127 (140)
T ss_dssp CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGGBCTTT
T ss_pred eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence 558999999999999999988764 48999999999999886 45543
No 32
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=94.69 E-value=0.016 Score=34.20 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCccccc-cccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGLA-EAPQ 66 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l~-~~~~ 66 (73)
+=+|..++.||+|+-+|++.++++ .+..+++-|.+++|.++. +.|+
T Consensus 45 DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 45 DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCC 92 (105)
T ss_dssp CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHH
T ss_pred eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 458899999999999999988764 488999999999998863 4443
No 33
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=94.63 E-value=0.0065 Score=40.22 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=41.4
Q ss_pred CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCccccccccccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGLAEAPQSS 68 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l~~~~~~~ 68 (73)
|-+|..|+.||+|+-+|++.++.+ ....+++-|.+++|.++++.|++-
T Consensus 61 DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~ 109 (202)
T 3drx_A 61 DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDK 109 (202)
T ss_dssp CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHH
Confidence 458899999999999999988665 357899999999999999888764
No 34
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.42 E-value=0.023 Score=34.14 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhHhhhcceEeecCC-cHHHHHHHHhhcCcccc-ccccc
Q psy14279 21 DKTFKHLTDILEFMYAGEVNVSQD-QLPSFLKTADRLKIKGL-AEAPQ 66 (73)
Q Consensus 21 ~v~~~~l~~ll~f~YtG~i~i~~~-~v~~ll~aA~~Lqi~~l-~~~~~ 66 (73)
+-+|..++.||+|+-+|++.++.+ .+..+++-|.+++|.+. .+.|+
T Consensus 51 DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 51 DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC 98 (115)
T ss_dssp CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGG
T ss_pred ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHHHHHHH
Confidence 568899999999999999988774 57899999999999774 34443
No 35
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=92.85 E-value=0.057 Score=31.69 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCHHHHHHHhHhhhc-ceEeecCC-cHHHHHHHHhhcCcccc
Q psy14279 21 DKTFKHLTDILEFMYA-GEVNVSQD-QLPSFLKTADRLKIKGL 61 (73)
Q Consensus 21 ~v~~~~l~~ll~f~Yt-G~i~i~~~-~v~~ll~aA~~Lqi~~l 61 (73)
+=+|..++.||+|.-+ |++.++++ .+..+++-|.+++|...
T Consensus 47 DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~ 89 (100)
T 1t1d_A 47 DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGEN 89 (100)
T ss_dssp CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHH
T ss_pred cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHH
Confidence 5688999999999999 99988654 47889999999999774
No 36
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=83.14 E-value=4 Score=24.93 Aligned_cols=61 Identities=21% Similarity=0.442 Sum_probs=45.4
Q ss_pred HHHHHhhh-------------hcCCCCHHHH-----HHHhHhhhcc-eEee-cCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 10 QFLEALFY-------------VIMDKTFKHL-----TDILEFMYAG-EVNV-SQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 10 ~YFr~lf~-------------~l~~v~~~~l-----~~ll~f~YtG-~i~i-~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+|||+||. .+..++...+ +.+||=+=-| ++.+ .++.|..++.-.....++|+.-.|+.-+
T Consensus 19 n~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYCDdeN 98 (126)
T 2rbg_A 19 NYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDEN 98 (126)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEECGGG
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEeCCCc
Confidence 79999998 4566665443 4566655445 3322 5688999999999999999999999865
Q ss_pred c
Q psy14279 70 K 70 (73)
Q Consensus 70 ~ 70 (73)
|
T Consensus 99 k 99 (126)
T 2rbg_A 99 K 99 (126)
T ss_dssp H
T ss_pred h
Confidence 5
No 37
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=79.33 E-value=1.7 Score=31.72 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhHhhhc-ceEeecCC-cHHHHHHHHhhcCccccc
Q psy14279 21 DKTFKHLTDILEFMYA-GEVNVSQD-QLPSFLKTADRLKIKGLA 62 (73)
Q Consensus 21 ~v~~~~l~~ll~f~Yt-G~i~i~~~-~v~~ll~aA~~Lqi~~l~ 62 (73)
|=+|..++.||+|..| |++..+++ ....+.+-|++++|.+..
T Consensus 98 DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 98 DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEA 141 (514)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred cCChHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhcCCCHHH
Confidence 6689999999999999 99988665 467789999999997643
No 38
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=62.21 E-value=3.7 Score=18.57 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.3
Q ss_pred CcHHHHHHHHhhcC
Q psy14279 44 DQLPSFLKTADRLK 57 (73)
Q Consensus 44 ~~v~~ll~aA~~Lq 57 (73)
.|++.+|+||.+|.
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 58999999999875
No 39
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=59.48 E-value=4.5 Score=26.38 Aligned_cols=15 Identities=53% Similarity=0.769 Sum_probs=12.3
Q ss_pred HHHHHHHhHhhhcce
Q psy14279 24 FKHLTDILEFMYAGE 38 (73)
Q Consensus 24 ~~~l~~ll~f~YtG~ 38 (73)
+-..+.++.|||+|+
T Consensus 185 ~~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 185 NQMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhcCC
Confidence 345679999999996
No 40
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.04 E-value=2.7 Score=23.98 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=28.7
Q ss_pred cceEeecCCcHHHHHHHHhhcCcccccccccccc
Q psy14279 36 AGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 69 (73)
Q Consensus 36 tG~i~i~~~~v~~ll~aA~~Lqi~~l~~~~~~~~ 69 (73)
+++-.++++|.-.++..|+.++.+.+.+.|.+.+
T Consensus 3 ~~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi 36 (105)
T 2eqx_A 3 SGSSGVQVGNCLQVMWLADRHSDPELYTAAKHCA 36 (105)
T ss_dssp CCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556789999999999999999999998887653
No 41
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=54.23 E-value=8.6 Score=20.29 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=30.7
Q ss_pred cCCCCHHHHHHHhHhhhcceE---eecCCcHHHHHHHHhhcCcc
Q psy14279 19 IMDKTFKHLTDILEFMYAGEV---NVSQDQLPSFLKTADRLKIK 59 (73)
Q Consensus 19 l~~v~~~~l~~ll~f~YtG~i---~i~~~~v~~ll~aA~~Lqi~ 59 (73)
.-|++..++..++. |+- .++++....+.++|..|+..
T Consensus 9 ~aGVS~sTVSrvLn----g~~~~~~vs~et~~rI~~aa~~lgY~ 48 (65)
T 1uxc_A 9 LAGVSRTTASYVIN----GKAKQYRVSDKTVEKVMAVVREHNYH 48 (65)
T ss_dssp HHTSCHHHHHHHHH----TCTTTTTCTTHHHHHHHHHHHHHTCC
T ss_pred HHCcCHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 34788888888876 776 89999999999999988763
No 42
>3g7p_A Nitrogen fixation protein; DUF 269 family protein, structural genomics, joint center FO structural genomics; HET: SO4 PG6; 2.00A {Acidithiobacillus ferrooxidans atcc 23ORGANISM_TAXID}
Probab=35.84 E-value=32 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=11.9
Q ss_pred CeEEEeeCCHHHHHhhh
Q psy14279 1 MVSSEQFCHQFLEALFY 17 (73)
Q Consensus 1 ~~~VLAa~S~YFr~lf~ 17 (73)
|.++|+-.|||++.|..
T Consensus 8 ~~~~~~~~~~F~~eLv~ 24 (156)
T 3g7p_A 8 MAALLPEESLFFRELVK 24 (156)
T ss_dssp ----CGGGCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 66888999999999887
No 43
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=41.52 E-value=8 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=23.7
Q ss_pred eeCCHHHHHhhh-----------------------hcCCCCHHHHHHHhHhhhcceEeec
Q psy14279 6 QFCHQFLEALFY-----------------------VIMDKTFKHLTDILEFMYAGEVNVS 42 (73)
Q Consensus 6 Aa~S~YFr~lf~-----------------------~l~~v~~~~l~~ll~f~YtG~i~i~ 42 (73)
|.+||.-++||. .=..+.++++..|.+|+=+|+..++
T Consensus 46 a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~~~I~~~~~sG~pvv~ 105 (107)
T 2ltm_A 46 AFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASGLPLVT 105 (107)
Confidence 457888888886 1123556667777777766665543
No 44
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=34.69 E-value=16 Score=19.25 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=30.9
Q ss_pred hcCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCcc
Q psy14279 18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi~ 59 (73)
..-|++..++..++. |.-.++++..+.++++|..|+..
T Consensus 17 ~~aGVS~sTVSr~ln----~~~~vs~~t~~rV~~~a~~lgY~ 54 (67)
T 2l8n_A 17 LKAKVSTATVSRALM----NPDKVSQATRNRVEKAAREVGYL 54 (67)
T ss_dssp HHTTCCHHHHHHTTT----CCCCSCHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCHHHHHHHHc----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 446888888888775 77778999999999999998863
No 45
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=29.53 E-value=29 Score=16.00 Aligned_cols=15 Identities=53% Similarity=0.793 Sum_probs=12.1
Q ss_pred HHHHHHhHhhhcceE
Q psy14279 25 KHLTDILEFMYAGEV 39 (73)
Q Consensus 25 ~~l~~ll~f~YtG~i 39 (73)
..+..++.||-+|+-
T Consensus 8 qmltdilsfmksgkr 22 (33)
T 3c0t_B 8 QMLTDILSFMKSGKR 22 (33)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcchH
Confidence 457789999999974
No 46
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=27.96 E-value=26 Score=15.46 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=10.5
Q ss_pred HHHHhHhhhcceE
Q psy14279 27 LTDILEFMYAGEV 39 (73)
Q Consensus 27 l~~ll~f~YtG~i 39 (73)
+..++.|-+||+-
T Consensus 9 vddvlkftftgek 21 (27)
T 2hzs_I 9 VDDVLKFTFTGEK 21 (27)
T ss_dssp HHHHHHHHHHCCC
T ss_pred hhheEEEEecccc
Confidence 4678999999974
No 47
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=26.84 E-value=31 Score=18.62 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=16.2
Q ss_pred hcCCCCHHHHHHHhHhhhc
Q psy14279 18 VIMDKTFKHLTDILEFMYA 36 (73)
Q Consensus 18 ~l~~v~~~~l~~ll~f~Yt 36 (73)
-.+.+++.+...|++|+|-
T Consensus 15 G~~~~~~~v~~~L~e~~~r 33 (68)
T 1taf_A 15 NVQEYEPRVVNQLLEFTFR 33 (68)
T ss_dssp TCCCBCTHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 4567899999999999975
No 48
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.09 E-value=77 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=17.3
Q ss_pred cCCCCHHHHHHHhHhhhcceEeecCCc
Q psy14279 19 IMDKTFKHLTDILEFMYAGEVNVSQDQ 45 (73)
Q Consensus 19 l~~v~~~~l~~ll~f~YtG~i~i~~~~ 45 (73)
+|+++.++++.++. +=.|.+..+-+.
T Consensus 23 FP~lD~evI~~Vl~-a~~G~~~~~Ida 48 (54)
T 1p3q_Q 23 FPDMDPSLIEDVCI-AAASRIGPCVDA 48 (54)
T ss_dssp STTSCHHHHHHHHH-HSCC--CGGGC-
T ss_pred cccCCHHHHHHHHH-HcCCCHHHHHHH
Confidence 48899999999887 666666554444
No 49
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=22.98 E-value=17 Score=26.29 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=14.4
Q ss_pred CCHHHHHHHhHhhhcceEe
Q psy14279 22 KTFKHLTDILEFMYAGEVN 40 (73)
Q Consensus 22 v~~~~l~~ll~f~YtG~i~ 40 (73)
..+-....||.|||+|+.-
T Consensus 193 ~~p~~~~~VLkFm~~G~~P 211 (407)
T 4gwp_C 193 SKPFNVDDVLKFTFTGEKP 211 (407)
T ss_dssp CCSSCHHHHHHHHHHCCCC
T ss_pred CCCCCHHHHHHHHhcCCCc
Confidence 3444578899999999853
No 50
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=28.30 E-value=18 Score=21.73 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCHHHHHhh-h----------------------hcCCCCHHHHHHHhHhhhcceEeec
Q psy14279 8 CHQFLEALF-Y----------------------VIMDKTFKHLTDILEFMYAGEVNVS 42 (73)
Q Consensus 8 ~S~YFr~lf-~----------------------~l~~v~~~~l~~ll~f~YtG~i~i~ 42 (73)
+||.-++|| . .=..+.|+++..|.+|+=+|+-.++
T Consensus 60 ~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~~~dW~~ikp~I~~~I~e~~~sg~pvv~ 117 (119)
T 2ltl_A 60 HSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVIS 117 (119)
Confidence 689999999 4 2245678888888888888776554
No 51
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=21.56 E-value=64 Score=17.67 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=33.4
Q ss_pred CCHHHHHhhhhcCCCCHHHHHHHhHhhhcceEe---ecCCcHHHHHHHH
Q psy14279 8 CHQFLEALFYVIMDKTFKHLTDILEFMYAGEVN---VSQDQLPSFLKTA 53 (73)
Q Consensus 8 ~S~YFr~lf~~l~~v~~~~l~~ll~f~YtG~i~---i~~~~v~~ll~aA 53 (73)
+-+|...|++++..++.+-++.++.-.=.+... ++.+.++++|...
T Consensus 9 ~w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~ 57 (74)
T 1ldd_A 9 SLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTL 57 (74)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHH
Confidence 346888888888899999999999865454343 4557777777654
No 52
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.34 E-value=48 Score=21.50 Aligned_cols=36 Identities=6% Similarity=0.106 Sum_probs=30.6
Q ss_pred cCCCCHHHHHHHhHhhhcceEeecCCcHHHHHHHHhhcCc
Q psy14279 19 IMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58 (73)
Q Consensus 19 l~~v~~~~l~~ll~f~YtG~i~i~~~~v~~ll~aA~~Lqi 58 (73)
.-|||..+++..|+ |.-.|+++.-+.++++|..|+-
T Consensus 9 ~agVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~~lgY 44 (340)
T 1qpz_A 9 RANVSTTTVSHVIN----KTRFVAEETRNAVWAAIKELHY 44 (340)
T ss_dssp HHTSCHHHHHHHHH----TCSCCCHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHc----CcCCCCHHHHHHHHHHHHHhCC
Confidence 34889999999888 6667899999999999998875
Done!