RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14279
(73 letters)
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 37.2 bits (87), Expect = 5e-05
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 3 SSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA 62
S+Q + AL I TF L L F+Y V + +L + A L ++ L
Sbjct: 52 VSQQLGRRGQWALGEGISPSTFAQL---LNFVYGESVELQPGELRPLQEAARALGVQSLE 108
Query: 63 EA 64
EA
Sbjct: 109 EA 110
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 34.9 bits (81), Expect = 5e-04
Identities = 10/59 (16%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 7 FCHQFLEALFYVIMDK-TFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
Q L + ++ T + +L+F Y ++ +S++ + ++ A+ L++ L ++
Sbjct: 62 LVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 34.9 bits (81), Expect = 5e-04
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 7 FCHQFLEALFYVIMDK--TFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
F Q L + +D + +L+FMY +N+ + + + + TA L+++ + +
Sbjct: 59 FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 33.8 bits (78), Expect = 0.001
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 3 SSEQFCHQFLEAL---FYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIK 59
SS F F + + + IL F Y G ++++ + TA L+I+
Sbjct: 55 SSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQ 114
Query: 60 GLAEA 64
+ E
Sbjct: 115 EIMEK 119
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 33.7 bits (78), Expect = 0.001
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 7 FCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+ +F +LEF+Y G +N+ + + AD LK++ +
Sbjct: 52 YRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 33.7 bits (78), Expect = 0.001
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 7 FCHQFLEALFYVIMD----KTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA 62
F E + + F L L++MY+ E+++ D + + L A + + LA
Sbjct: 42 FYGDLAEVKSEIHIPDVEPAAFLIL---LKYMYSDEIDLEADTVLATLYAAKKYIVPALA 98
Query: 63 EA 64
+A
Sbjct: 99 KA 100
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 33.4 bits (77), Expect = 0.002
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 30 ILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+L+F Y G + ++ L A L++ E
Sbjct: 76 LLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVEL 110
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 33.4 bits (77), Expect = 0.002
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
L +LEFMY ++++S + + L A L+++ + A
Sbjct: 74 LGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 32.9 bits (76), Expect = 0.002
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 FCHQFLEAL--FYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
F + Y I + + LT +++F Y + VS + L A L+I ++
Sbjct: 55 FTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 6 QFCHQFLEALFYVI----MD-KTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKG 60
F H+ E+ + ++ + FK + + F+Y G+ L AD+ ++
Sbjct: 54 MFEHEMEESKKNRVEINDVEPEVFKEM---MCFIYTGKAPNLDKMADDLLAAADKYALER 110
Query: 61 L 61
L
Sbjct: 111 L 111
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 33.0 bits (76), Expect = 0.002
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
ILE+ Y + + L L A+ L+I+ L E
Sbjct: 75 FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 32.6 bits (75), Expect = 0.003
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 30 ILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+L+F Y G + ++ L A L++ E
Sbjct: 75 LLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 32.6 bits (75), Expect = 0.004
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+++F Y ++ +S+D + + + L + + E+
Sbjct: 87 FEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 32.6 bits (75), Expect = 0.004
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 6 QFCHQFLEALFYVI----MD-KTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKG 60
F H+ E+ + ++ + FK + + F+Y G+ L AD+ ++
Sbjct: 63 MFEHEMEESKKNRVEINDVEPEVFKEM---MCFIYTGKAPNLDKMADDLLAAADKYALER 119
Query: 61 L 61
L
Sbjct: 120 L 120
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 32.2 bits (74), Expect = 0.005
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+++F Y ++ +S++ + K + L + + E+
Sbjct: 80 FEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 31.5 bits (72), Expect = 0.010
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+ +IL+++++G++ +++D + ++ AD L + L
Sbjct: 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 138
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 31.1 bits (71), Expect = 0.017
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+ ++E+MY G + VS + L+ ADR + L E
Sbjct: 93 VEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEF 130
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 31.0 bits (71), Expect = 0.019
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 27 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 64
+ +IL+++++G++ +++D + ++ AD L + L
Sbjct: 85 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 29.5 bits (66), Expect = 0.064
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 18 VIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGL 61
I D + +++ F+Y G+ L AD+ ++ L
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 28.4 bits (64), Expect = 0.092
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 8 CHQFLEALF------YVIMDKTFKHLTDILEFMYAGE-VNVSQDQLPSFLKTADRLKIKG 60
+ LF + + +IL ++Y+ + V V D L +K+ L +K
Sbjct: 53 SSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF 112
Query: 61 LAE 63
+A
Sbjct: 113 IAA 115
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 28.3 bits (64), Expect = 0.15
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S +P + D+ K KG
Sbjct: 60 SSKHVPPYKHNIDKFKAKG 78
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology,
structural genomics, NEW YORK structura genomics
research consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 28.0 bits (63), Expect = 0.16
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S + LP +L+ D + +G
Sbjct: 73 SLNHLPGYLENRDAILARG 91
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP:
c.47.1.1 c.47.1.10
Length = 241
Score = 28.1 bits (63), Expect = 0.18
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S LP + + A K G
Sbjct: 50 SSSHLPRYNELAPVFKKYG 68
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 28.0 bits (63), Expect = 0.19
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S +P +++ A++L+ G
Sbjct: 64 SAQHVPGYVEHAEQLRAAG 82
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate
analog, DTT, oxidoreductase; 1.45A {Homo sapiens} PDB:
2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 27.6 bits (62), Expect = 0.25
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S+ LP F++ A+ LK KG
Sbjct: 60 SKTHLPGFVEQAEALKAKG 78
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 27.6 bits (62), Expect = 0.25
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S +P F++ A LK KG
Sbjct: 52 SLKHVPGFIEKAGELKSKG 70
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes;
1.75A {Arenicola marina}
Length = 167
Score = 27.2 bits (61), Expect = 0.31
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S+ LP +++ A + KG
Sbjct: 48 SKTHLPGYVEQAAAIHGKG 66
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A
{Alvinella pompejana}
Length = 171
Score = 26.4 bits (59), Expect = 0.69
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 42 SQDQLPSFLKTADRLKIKG 60
S + +P +L D+ K +G
Sbjct: 58 SNNHIPEYLSLYDKFKEEG 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 43 QDQLPSFLKTADRLKIKGLAEAPQSSVK 70
+ Q + K LK+ AP ++K
Sbjct: 18 EKQ--ALKKLQASLKLYADDSAPALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 3.7
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 17 YVIMDKTFKHLT-DILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 71
++ +D LT D ++ + ++ LP + T + ++ +AE+ + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 23.9 bits (51), Expect = 6.7
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 32/95 (33%)
Query: 3 SSEQF---CHQFLEALFYV---------IMDKTFKHLTDILEFMYAGE---------VNV 41
S E F + + LF++ L D LE E N+
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE---NNEGVPSPMLSISNL 344
Query: 42 SQDQLPSF-------LKTADRLKIKGLAEAPQSSV 69
+Q+Q+ + L +++I L ++ V
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLV 378
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB:
3r8f_A* 2hcb_A*
Length = 324
Score = 23.6 bits (52), Expect = 8.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 2 VSSEQFCHQFLEAL 15
S++ F +E L
Sbjct: 71 SSADDFAQAMVEHL 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.377
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,007,779
Number of extensions: 45160
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 36
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)