RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14279
         (73 letters)



>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 38.9 bits (90), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 1   MVSSEQFCHQFLEALFYVIMDKTFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKG 60
             S          +  Y +   + K    ILE+ Y   +    + L   L  A+ L+I+ 
Sbjct: 49  CTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY 108

Query: 61  LAEA 64
           L E 
Sbjct: 109 LEEQ 112


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 35.9 bits (82), Expect = 8e-05
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 1   MVSSEQFCHQFLEALFYVIMDK--TFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKI 58
            +    F  Q    L  + +D     +    +L+FMY   +N+ +  + + + TA  L++
Sbjct: 49  GLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 108

Query: 59  KGLAEA 64
           + + + 
Sbjct: 109 EHVVDT 114


>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 269

 Score = 22.3 bits (47), Expect = 7.3
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 6  QFCHQFLEALFYVIMDKTFKHLTDILEFMYAGE 38
          +  H  +   +  I+D+T   L  ++E+   G+
Sbjct: 59 ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGD 91


>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 321

 Score = 22.1 bits (47), Expect = 8.2
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 1   MVSSEQFCHQFLEALFYVIMDKTFKHLTD 29
           +   E     F +  F  I+   F  +TD
Sbjct: 198 VAQEEAAAQSFYQTYFCDILQHIFSVVTD 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,587
Number of extensions: 8703
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 5
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)