BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14280
(1891 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex
Length = 1140
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1119 (41%), Positives = 644/1119 (57%), Gaps = 93/1119 (8%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P++LFF+++DGVAPRAKMNQQR RRFR+A+EAE E KA ++GE L +RFDSNCITPG
Sbjct: 77 PQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE-LREHERFDSNCITPG 135
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RL + LR F+K KI+TD LW+ VILSG E PGEGEHKIMDYIRY
Sbjct: 136 TEFMVRLQEGLRAFLKTKISTDPLWQRC---------TVILSGQEAPGEGEHKIMDYIRY 186
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
MK++PDY+PN RHCLYGLDA LI+LGLCTHE +F +LREEVKF + + EET
Sbjct: 187 MKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKR-----TSVEET 241
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
+FFLLHL L+R+YLELEF L+ I +IDDWVLMGFL+GNDFIP+LP LHI
Sbjct: 242 RFFLLHLGLLREYLELEFDALRTD---EHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY+ Y + PTL G INE G LNL+R + F++ L + + F+E D++Y+
Sbjct: 299 SSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMN 358
Query: 438 GKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXXXXXXXXXXWR 497
K DV +S+ +D DL ALI + YDD +
Sbjct: 359 NKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAV------------ 406
Query: 498 TNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPH 557
EF +K ++Y K +E++ + Y+ A+QW L YYY G SW WYYP
Sbjct: 407 --LLKEFQNYKRNFYRNKFK-RDPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPF 463
Query: 558 HYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILE 617
HY P+ISD+K+ + + + MG PFLPFQQLLAVLPAAS +LLP Y +LM L SP+ E
Sbjct: 464 HYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAE 523
Query: 618 YYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTY 677
+YP EF +DLNGKK DWEAVVLIPFIDE +L+ AM E L+ EER RNRHGPM VY Y
Sbjct: 524 FYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHGPMYVYKY 583
Query: 678 SNVNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDV---NLKLYVTHFP 734
S V G A A+ + E + +I V+ L +C ++ ++ FP
Sbjct: 584 STVAQGPMPAYPPLRALPVLYCTEVAKWSHEIAVN---LPYSVCIELPNAARTVFFPGFP 640
Query: 735 TLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVP-SLKQVADQILGKTIFINYPHL 793
T++H+ F ++ N +VKVF+Q SRN++I++ K Q+ +L VA Q LGK I + +PHL
Sbjct: 641 TMQHLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHL 700
Query: 794 IEIRVQAVATKDSRISFDK---NSGPVFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGN 850
++ V VAT+D R+ + N F+ K +Q+ F ++G+ N
Sbjct: 701 VKAIVVRVATRDQRVDSEGITLNDSRRFDSECKALQEHF-----------INRMGIQFAN 749
Query: 851 TEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQ-QARESLEYKTIDE 909
+VLVY + F +G + + ++ S Y Q V +L R + ++
Sbjct: 750 YDVLVYVRTFAGNSTEFRDKGALMVRDSWSSSVTGYPAQGVVADLTVWERMRKNFLNVEH 809
Query: 910 IFYPGCQCFALSNPHYGSGGCVIS-TVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNY 968
F G F +++P+YGS G V + N I++S V+ EP ++ LQ++ +Y
Sbjct: 810 YFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVRPEPKVNAARQLQEERDRDY 869
Query: 969 LPSYTVASKLSISPLLLSRFTGSIFII----DSTEEGAKRHNIGLNIKFSRKNEEVVGFT 1024
L ++ V + L IS L R +G+++++ E +HNIGL +K+ R+NEE G+
Sbjct: 870 LSTFQVCNLLRISGRTLGRLSGTVWVVLGPRRQKMENVTKHNIGLQLKYPRQNEERAGYC 929
Query: 1025 RRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSD--DIYLRDDVFPHQ-GEQRVA 1081
R T +W+Y+ V L++NY +++P+V F D S+D + DVFP+ G +RV
Sbjct: 930 FR--TNNQWYYSSLAVDLMRNYCQRYPDVIDFFGD-SNDRAEFVFEQDVFPNAVGHRRVE 986
Query: 1082 QIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE-KQITLFVKPNKLYIPK 1140
++ +W+++QPH K E CG+ V + + L+ AVD + K + L VKP+ L P
Sbjct: 987 ELANWVRQQPHMKVERISCGSKTVCRETIELLIAAVDDLRSLPVKHVKLQVKPHLLIKPN 1046
Query: 1141 PTLDKLCPD---PDTKFKLFDRVVNIRDCYTVPLGYRGTIIGI----------VQGETSY 1187
TL PD +LFDRVV +R Y VP+G +GT+IGI ++ +
Sbjct: 1047 VTL----PDVYRSKRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVHAV 1102
Query: 1188 DAMYDVVFDKPFP-----HGVKIRCSESRGYRMPAQAMI 1221
D V+FD P P HG+ +E R Y++P A++
Sbjct: 1103 DTFCKVLFDSPVPNCNNIHGI----AEDRVYKVPEIALV 1137
Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 113/129 (87%), Gaps = 1/129 (0%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKFFRYISERYPCLSE+ RE+ IPEFDNLYLDMNGI+HNCSHP+DN+ HF + E+QI
Sbjct: 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
FQ+IF+Y++ LF +I+P++LFF+++DGVAPRAKMNQQR RRFR+A+EAE E KA ++GE
Sbjct: 61 FQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE 120
Query: 121 RLPTEKRFD 129
L +RFD
Sbjct: 121 -LREHERFD 128
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 329 bits (843), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 158/303 (52%), Positives = 212/303 (69%), Gaps = 15/303 (4%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PK+ F+MAIDGVAPRAKMNQQR RRFR+A +AE QKA E G+ LP + FDSN ITPG
Sbjct: 77 PKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM +L + L+YF+ KIT D W++ V VI SGHE PGEG+HKIMDYIR
Sbjct: 137 TEFMAKLTENLKYFIHDKITNDTRWQN---------VKVIFSGHEVPGEGQHKIMDYIRA 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
++++ DYNPN RHC+YGLDADLI+LGL TH+ +F LLREEV F +S S + T E
Sbjct: 188 IRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRS----SSVKTLETQ 243
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
FFLLHLS++R+YL LEF ++ + + F + E ++DD++ + F IGNDF+PNLPDLH+
Sbjct: 244 NFFLLHLSILREYLALEFEEITDS--VQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHL 301
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
GA P+L + ++E L +DGYINE G +NL RF +L L+ F++ F +K D+++
Sbjct: 302 KKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFN 361
Query: 438 GKM 440
++
Sbjct: 362 QQL 364
Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 242/486 (49%), Gaps = 29/486 (5%)
Query: 504 FGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYI 563
F + K YY KLD++ + L++ E Y+ +QW L+YYY GC SWSWYY +HYAP I
Sbjct: 488 FVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRI 547
Query: 564 SDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEF 623
SD+ N+++ G+PF PFQQL+AVLP SK L+P Y+ LM E+SPIL++YP E
Sbjct: 548 SDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEV 607
Query: 624 ATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYS---NV 680
DLNGK DWEAVV I F+D+ +L++AM + L+ +E+ RN G L++ ++ +
Sbjct: 608 ELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIFNPQVDT 667
Query: 681 NLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKL-YVTHFPTLKHV 739
T LA F I NH +E+ + + K GL + L + FP+LK +
Sbjct: 668 VYKTPLA-GLFNDIEHNHCIEREFIPESM--ENVKFLFGLPKGAKLGASSLAGFPSLKTL 724
Query: 740 QFTHKIENAKVKVFQQPSRNESIII-VQD--KVQVPSLKQVADQILGKTIFINYPHLIEI 796
T ++ VF PS+ +S+++ +QD K SL +A + +GK ++ +P L E
Sbjct: 725 PLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWPFLRES 784
Query: 797 RVQAVATKDSRISFDKNS--GPVFERAAKDMQ-DAFQLSKKSITDGYYTKLGVDIGNTEV 853
++ ++ T+++ K+ V ER +D + F+ K ++ Y + + +
Sbjct: 785 KLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISA 844
Query: 854 LVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESLEYKT---IDEI 910
L PV + ++F + Y Q V +++ E K I++
Sbjct: 845 LAKVVPVNG----LVRNSDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPLPINKE 900
Query: 911 FYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFKVQQ-----EPDLSDLVHLQDDTV 965
F G + L + YG +TV NS +L V++ EP++ + D
Sbjct: 901 FPKGSKVVFLGDYAYGGE----ATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQA 956
Query: 966 YNYLPS 971
+ P+
Sbjct: 957 LRFYPT 962
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 101/129 (78%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MG+PKFF +ISER+P +S+++ QIPEFDNLYLDMN I+HNC+H + ++ + R++E+++
Sbjct: 1 MGIPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEV 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ IF YI+ LF I+PK+ F+MAIDGVAPRAKMNQQR RRFR+A +AE QKA E G+
Sbjct: 61 YSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGD 120
Query: 121 RLPTEKRFD 129
LP + FD
Sbjct: 121 ELPKGEPFD 129
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 1153 KFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKI--RCSES 1210
+F L DRV+ I+D VPL +GT++G + V+FD G R
Sbjct: 1065 RFHLGDRVMYIQDSGKVPLHSKGTVVGYTS--IGKNVSIQVLFDNEIIAGNNFGGRLQTR 1122
Query: 1211 RGYRMPAQAMINLS 1224
RG + + ++NLS
Sbjct: 1123 RGLGLDSSFLLNLS 1136
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 899
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 238/461 (51%), Gaps = 101/461 (21%)
Query: 2 GVPKFFRYIS---------------ERYPCLSEVVREYQIP-----EFDNLYLDMNGIIH 41
GVP FR +S E+ P +E+ + +P E DNLYLD NGI+H
Sbjct: 5 GVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDXNGIVH 64
Query: 42 NCSHPNDN-DPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGR 100
CSHP D P TE + +F Y + + ++P++L F+AIDGVAPRAK NQQR R
Sbjct: 65 PCSHPEDRPAPE---TEDEXXVAVFEYTDRILAXVRPRQLLFIAIDGVAPRAKXNQQRSR 121
Query: 101 RFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160
RFRS++EA + E++ + FI
Sbjct: 122 RFRSSREAALKEEELQA------------FI----------------------------- 140
Query: 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDK 220
E +Q+ E +K +DSNCITPGTPF L + LRY++ K+ +D
Sbjct: 141 ---------EEAKQQGIPIDENATKKKSWDSNCITPGTPFXDTLAKSLRYYIINKLNSDP 191
Query: 221 LWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLI 280
W++V ILS PGEGEHKI ++IR + KP+Y+PN H +YGLDADLI
Sbjct: 192 ---------CWRNVRFILSDASVPGEGEHKIXEFIRSQRVKPEYDPNTHHVVYGLDADLI 242
Query: 281 MLGLCTHEPYFSLLREEVKFNTKSNK-------GGSQIVTPEETK-------FFLLHLSL 326
LGL THEP+F +LRE+V F S K G ++ ET F L++S+
Sbjct: 243 XLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSI 302
Query: 327 MRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLY 386
+R+YLE+E L P L FPF +E IDDWV F +GNDF+P+LP L I +GA+ L
Sbjct: 303 LREYLEVE---LYVPN-LPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLT 358
Query: 387 KVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFR 427
++++ LP GY+ G +NL R E L+ + + + + F+
Sbjct: 359 EIWRASLPHXGGYLTLDGSVNLARAEVILSAVGNQEDDIFK 399
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 113/169 (66%)
Query: 507 HKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDI 566
++ YY K + E +R+ + Y+ + W L YYY GC SW+WYYP+HYAP+ +D
Sbjct: 594 YRERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPFAADF 653
Query: 567 KDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
KD + +++K+E+ +PF P++QLL VLPAASK LPE Q L T ENS I+++YPE F D
Sbjct: 654 KDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLXTDENSEIIDFYPENFTID 713
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVY 675
LNGKK +W+ V L+PFIDE +L+ A+ + LT+EE RN G L++
Sbjct: 714 LNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLF 762
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With 1-Alpha-Hydroxy-
Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With 1-Alpha-Hydroxy-
Vitamin D2
Length = 479
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 1122 KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLG--------- 1172
+V+K+I L + PN KP+ D C P T+ L + +R C VPLG
Sbjct: 309 QVQKEIDLIMGPNG----KPSWDDKCKMPYTEAVLHEV---LRFCNIVPLGIFHATSEDA 361
Query: 1173 -YRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKI----RCSESRGYRMPAQAMINLSYGE 1227
RG I +G T +Y V FD+ + ++ R +S GY +A++ S G
Sbjct: 362 VVRG--YSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGR 419
Query: 1228 RLC 1230
R C
Sbjct: 420 RHC 422
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 1122 KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLG--------- 1172
+V+K+I L + PN KP+ D C P T+ L + +R C VPLG
Sbjct: 309 QVQKEIDLIMGPNG----KPSWDDKCKMPYTEAVLHEV---LRFCNIVPLGIFHATSEDA 361
Query: 1173 -YRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKI----RCSESRGYRMPAQAMINLSYGE 1227
RG I +G T +Y V FD+ + ++ R +S GY +A++ S G
Sbjct: 362 VVRG--YSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGR 419
Query: 1228 RLC 1230
R C
Sbjct: 420 RHC 422
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 403 GGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG 438
GG L KRF + T LA F Q+ + Y DI ++G
Sbjct: 72 GGLLQCKRFGRPPTTLAEFSLNQYGKDYIDISNIKG 107
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 403 GGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG 438
GG L KRF + T LA F Q+ + Y DI ++G
Sbjct: 72 GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKG 107
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 403 GGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG 438
GG L KRF + T LA F Q+ + Y DI ++G
Sbjct: 72 GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKG 107
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 403 GGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG 438
GG L KRF + T LA F Q+ + Y DI ++G
Sbjct: 72 GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKG 107
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 403 GGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG 438
GG L KRF + T LA F Q+ + Y DI ++G
Sbjct: 72 GGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKG 107
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 1149 DPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAM--YDVVFDKPFPHGVK-- 1204
+P+ ++ FDR++ + + LG ++GIV GE + A YD+ PF K
Sbjct: 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKEL 367
Query: 1205 IRCSESRGYR 1214
+ CS Y+
Sbjct: 368 VSCSNCTDYQ 377
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida
Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 1149 DPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAM--YDVVFDKPFPHGVK-- 1204
+P+ ++ FDR++ + + LG ++GIV GE + A YD+ PF K
Sbjct: 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKEL 367
Query: 1205 IRCSESRGYR 1214
+ CS Y+
Sbjct: 368 VSCSNCTDYQ 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,208,369
Number of Sequences: 62578
Number of extensions: 2283731
Number of successful extensions: 5481
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5440
Number of HSP's gapped (non-prelim): 29
length of query: 1891
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1778
effective length of database: 7,902,023
effective search space: 14049796894
effective search space used: 14049796894
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)