BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14280
(1891 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1
Length = 1719
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1149 (44%), Positives = 715/1149 (62%), Gaps = 69/1149 (6%)
Query: 131 ITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFD 190
+ + P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFD
Sbjct: 70 VLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFD 129
Query: 191 SNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHK 250
SNCITPGT FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHK
Sbjct: 130 SNCITPGTEFMARLHEHLKYFVNMKISTDK---------SWQGVTIYFSGHETPGEGEHK 180
Query: 251 IMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQ 310
IM++IR K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + +
Sbjct: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---R 237
Query: 311 IVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP 370
+ PEET F LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP
Sbjct: 238 VCAPEETTFHLLHLSLMREYIDYEFSALKEK--ITFKYDIEKIIDDWILMGFLVGNDFIP 295
Query: 371 NLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+LP LHI + ALPLLY Y +LP L GYINE G+LNL RFE++L KL+ FD E F E +
Sbjct: 296 HLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSEVF 355
Query: 431 ADIQYLEGKMGKKFSDVFH----------KEKSKEMDPDLAALIKATDDDYDDGTEEVLN 480
D+++ E K+G K+ + KEK K + + A D +G V +
Sbjct: 356 VDLKWFESKVGNKYLNEAAGAAAEEAKNCKEKRKPKGQENSLSWAALDKSEGEG---VAS 412
Query: 481 YANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWN 540
N+E+ ED++ F +EF Q+K YY K+ V++E L +QA CY++AIQW
Sbjct: 413 RDNFED---ETEDDDL---FETEFRQYKRTYYMTKMGVDVVSDEFLANQAACYVQAIQWI 466
Query: 541 LHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELL 600
LHYYY+G SWSWYYP+HYAP++SDI+ S L + +E+G+PF PF+QLLAVLP+ASK LL
Sbjct: 467 LHYYYHGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLL 526
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLT 660
P YQ+LMT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L
Sbjct: 527 PTCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLK 586
Query: 661 DEERSRNRHGPMLVYTYSNVNLGTALA--PDYFPAINENHAVEKPLYRDDIYVHPNKLRK 718
EER RN+H L+ Y T + P+ FPAI K + D V NK +
Sbjct: 587 KEERKRNQHSECLMCWYDRDTEFTYSSPWPEKFPAIERCCTRYKMISLDAWRVDINKNK- 645
Query: 719 GLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII---VQDKVQVPSLK 775
+ + LY FPTLKH++ ++ + V+VFQQ SR E++++ V + ++
Sbjct: 646 -ITRVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENLMLEISVNAEPDELRIE 704
Query: 776 QVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP--VFERAAKDMQDAFQLSK 833
+A +LGK +F+N+PHL E RV AV+ +++ ++ G V+ QL+
Sbjct: 705 NIASAVLGKAVFVNWPHLEEARVVAVSDGETKFYIEEPPGTQKVYLGKTAPPSKVIQLTD 764
Query: 834 K----------SITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRST 883
K I++ Y + G+ I T +VY Q + RKY G+V ++ + +
Sbjct: 765 KEQSNWTKEIQGISEQYLRRKGIIINETSAVVYAQLLTGRKYQISQNGEVRLEKQWSKQI 824
Query: 884 VTYAYQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGGCVIST---VKEEN 939
+ + YQ+ V +++ KT+D++F P F L P+YG G V + + E
Sbjct: 825 LPFVYQTIVKDIRAFDSRFSNIKTLDDLFPPRTMVFMLGTPYYGCTGEVQDSGDLITEGR 884
Query: 940 SFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTE 999
I++ F + EP+L L+ Q Y P Y +A +L +S L+SRFTGSIFI +
Sbjct: 885 --IRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSR 942
Query: 1000 ---EGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGF 1056
G + N+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F +
Sbjct: 943 RNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGNEWMYSSAAEQLLAEYIERAPELFSY 1000
Query: 1057 LKDHSSDDIYLRDDVFPHQ---GEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLI 1113
+ +S +D++ DD++P + G ++V +I++WLK P + C ++DA +V I
Sbjct: 1001 IAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLHILDAAIVEKI 1060
Query: 1114 EHAVDTCE--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPL 1171
E V+ C+ K K++ + VKP+ +Y P + PD D +F+LFDRVVN+R+ ++VP+
Sbjct: 1061 EEEVEKCKQRKSNKKVRVTVKPHLMYRPLEQQHGVIPDRDAEFRLFDRVVNVRESFSVPV 1120
Query: 1172 GYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGERLCG 1231
G RGT+IGI D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R C
Sbjct: 1121 GLRGTVIGIKGASREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR-CE 1179
Query: 1232 NSNPHVKNI 1240
N + I
Sbjct: 1180 TGNQKLTAI 1188
Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1
Length = 1706
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/1137 (44%), Positives = 714/1137 (62%), Gaps = 68/1137 (5%)
Query: 131 ITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFD 190
+ + P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFD
Sbjct: 70 VLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFD 129
Query: 191 SNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHK 250
SNCITPGT FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHK
Sbjct: 130 SNCITPGTEFMARLHEHLKYFVNMKISTDK---------SWQGVTIYFSGHETPGEGEHK 180
Query: 251 IMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQ 310
IM++IR K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + +
Sbjct: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---R 237
Query: 311 IVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP 370
+ PEET F LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP
Sbjct: 238 VCAPEETTFHLLHLSLMREYIDYEFSVLKEK--ITFKYDIERIIDDWILMGFLVGNDFIP 295
Query: 371 NLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+LP LHI + ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E +
Sbjct: 296 HLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVF 355
Query: 431 ADIQYLEGKMGKKFSDVF----------HKEKSKEMDPDLAALIKATDDDYDDGTEEVLN 480
D+++ E K+G K+ + +KEK K + + A D + +G E + +
Sbjct: 356 VDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKN--EG-EMITS 412
Query: 481 YANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWN 540
N E+ ED++ F +EF Q+K YY K+ V+++ L DQA CY++AIQW
Sbjct: 413 KDNLED---ETEDDDL---FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWI 466
Query: 541 LHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELL 600
LHYYY+G SWSWYYP+HYAP++SDI + S L + +E+G+PF PF+QLLAVLPAASK LL
Sbjct: 467 LHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLL 526
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLT 660
P YQ+LMT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L
Sbjct: 527 PACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLK 586
Query: 661 DEERSRNRHGPMLVYTYSNVN--LGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRK 718
EER RN+H L+ Y + + P+ FPAI K + D V NK +
Sbjct: 587 KEERKRNQHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNK- 645
Query: 719 GLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLK 775
+ + LY FPTLKH++ ++ + V+VFQQ SR E++ I+V + +++
Sbjct: 646 -ITRIDQKALYFCGFPTLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVE 704
Query: 776 QVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP-------------VFERAA 822
VA +LGK++F+N+PHL E RV AV+ +++ ++ G V
Sbjct: 705 NVASSVLGKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGD 764
Query: 823 KDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRS 882
K+ Q + + I++ Y + G+ I T +VY Q + RKY G+V ++ + +
Sbjct: 765 KE-QSNWAKEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQ 823
Query: 883 TVTYAYQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEEN 939
V + YQ+ V +++ KT+D++F F L P+YG G V + V E
Sbjct: 824 VVPFVYQTIVKDIRAFDSRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEG 883
Query: 940 SFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTE 999
I++ F + EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI +
Sbjct: 884 R-IRVIFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSR 942
Query: 1000 ---EGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGF 1056
G + N+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F +
Sbjct: 943 RNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGSEWMYSSAAEQLLAEYLERAPELFSY 1000
Query: 1057 LKDHSSDDIYLRDDVFPHQ---GEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLI 1113
+ +S +D++ DD++P + G ++V +I++WLK P + C ++DA +V I
Sbjct: 1001 IAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKI 1060
Query: 1114 EHAVDTCE--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPL 1171
E V+ C+ K K++ + VKP+ LY P + PD D +F LFDRVVN+R+ ++VP+
Sbjct: 1061 EEEVEKCKQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPV 1120
Query: 1172 GYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
G RGTIIGI D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R
Sbjct: 1121 GLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR 1177
Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1214 (34%), Positives = 634/1214 (52%), Gaps = 148/1214 (12%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PKKL +MA+DG APRAKMNQQR RRFR+AK+A KA+ GE P E++FDSNCITPG
Sbjct: 77 PKKLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGEDFP-EEQFDSNCITPG 135
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM R+ +QL YF+ K+T D W+++ VI SGH+ PGEGEHKIM+YIR
Sbjct: 136 TTFMERVSRQLYYFIHKKVTNDS---------QWQNIEVIFSGHDCPGEGEHKIMEYIRT 186
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K++P YNPN RHCLYGLDADLIMLGL +H+P+F LLREEV F S ++
Sbjct: 187 QKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNRSKELA---HQ 243
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
KF+LLHLSL+R+YLE EF + + +F + +E I+DD++L+ F +GNDF+P+LP LHI
Sbjct: 244 KFYLLHLSLLREYLEFEFQECR--STFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHI 301
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKR----------FEKFLTKLA-------- 419
GAL L++ +Y++V+P+ GYINE G +N+ R FEK + K
Sbjct: 302 NEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFKAEVSETKNNG 361
Query: 420 -----SFDFEQF-REKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDY-- 471
SFDF ++ E DI+ + G+ F + S+E D +A I + D +
Sbjct: 362 NSDKPSFDFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFIDFSANISSVDQRFLR 421
Query: 472 ---------------DDGTEEV------LNY-----------------ANYEEYYYSDED 493
DGT + L + Y+ +E+
Sbjct: 422 RLCNDLHLSFSKIIKVDGTHLLRITFRDLEFNDEDEDEIEQDEIERVLQKYDNIPLLNEE 481
Query: 494 EEWR-TNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWS 552
+ + N +F Q K DYY K+ ++ E L+ AE Y+ +QW L YYY GC SW
Sbjct: 482 QALKEKNVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQWVLFYYYRGCQSWG 541
Query: 553 WYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLEN 612
WYY +H+AP ISD+ + + ++MG PF PF+QL+AVLPA S+ L+P +++LM
Sbjct: 542 WYYNYHFAPKISDVLKGLDVKIDFKMGTPFRPFEQLMAVLPARSQALVPPCFRDLMVNSE 601
Query: 613 SPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPM 672
SPI+++YPE FA D NGK WEAVV+IPFIDE +LI A+ + + LT+EER RN
Sbjct: 602 SPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEERKRNSFNAP 661
Query: 673 LVYTYSN--VNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRK----GLCQDVNL 726
V++ + + + P FP + ++KP Y P+ K GLC V L
Sbjct: 662 TVFSLAEDYTSFYPSSLPSLFPDL-VTRCIQKP------YSLPSMEGKEYLVGLCPGVFL 714
Query: 727 KLY-VTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII-VQDKVQVPSLKQVADQILGK 784
+ + FP+ ++ ++ + VF SRN S+I+ V+D + +Q+A Q +GK
Sbjct: 715 GAFGMVGFPSFHTLKHKAELVYHGINVFGNESRNPSVIVNVEDVKSALTSEQIAMQYVGK 774
Query: 785 TIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSI--TDGYYT 842
IF+++P+L E V++ A +S + NS + +R +++ + Q +K Y
Sbjct: 775 RIFVDWPYLREAYVES-AMDESYMYLASNS-TIEKRDLAEIEKS-QWGRKCSHKIREYSK 831
Query: 843 KLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESL 902
+ GV G+ +L+ +P++ +Y T++ ++ + +VL A+ +
Sbjct: 832 RFGVLFGDISLLLQVRPIKGLEY--------TREGALVK-----IFNESVLEDYPAQLVV 878
Query: 903 EYKTID------------EIFY-PGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFKVQ 949
E ID E+ Y PG + F L +YG I+ K+ I LS
Sbjct: 879 EKIAIDDPRFTEREAPPVEVEYPPGTKAFHLGEYNYGRPA-QITGCKDNKLIIWLSTAPG 937
Query: 950 QEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGL 1009
+ ++ + Y PSY VA L+I PLLLS+ T S I G KR NIGL
Sbjct: 938 LDAQWGRVLVNDSKSKEKYYPSYIVAKLLNIHPLLLSKITSSFLI----SNGTKRENIGL 993
Query: 1010 NIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRD 1069
N+KF +N++V+GF+R+ +TK W ++ + V L+K Y+ FP++F L H++ D
Sbjct: 994 NLKFDARNQKVLGFSRK--STKGWEFSNKTVALVKEYINTFPQLFNILTTHATKDNLTVK 1051
Query: 1070 DVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEH---AVDTCEKVEKQ 1126
D FP Q++A + W+KE+ +D+ ++ LIE +D+ +V K+
Sbjct: 1052 DCFPKDDTQQLAAVKHWIKEKGINSLTRVSLDEDALDSDIIKLIEEKASTIDSTYQVPKK 1111
Query: 1127 ITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETS 1186
+ V L P T L +F L DRVV ++D VP+ GT++GI+
Sbjct: 1112 V-FGVPRYALLKPSQTRGIL---HSQEFALGDRVVYVQDSGKVPIAAYGTVVGIMLHHL- 1166
Query: 1187 YDAMYDVVFDKPFPHGVKI--RCSESRGYRMPAQAMINLSYGERLCGNSNPHVKNINVMQ 1244
DVVFD PF G + RCS G ++ ++N++ + + + NV
Sbjct: 1167 -----DVVFDLPFMSGTTLDGRCSPYHGMQVEVSMVLNVTNPQFVVNTRAGKNRKTNVSA 1221
Query: 1245 SRGERNTNYAQVTR 1258
+ + T+ VT+
Sbjct: 1222 NNVSQGTDSRLVTK 1235
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 99/129 (76%), Gaps = 1/129 (0%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MG+PKFFR++SERYP S+++ +IPEFDNLYLDMNGI+HNC+H ND+ + E+++
Sbjct: 1 MGIPKFFRWMSERYPLCSQLIENDRIPEFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEM 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ IF+YIE LF I+PKKL +MA+DG APRAKMNQQR RRFR+AK+A KA+ GE
Sbjct: 61 YIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGE 120
Query: 121 RLPTEKRFD 129
P E++FD
Sbjct: 121 DFP-EEQFD 128
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1
PE=1 SV=2
Length = 908
Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust.
Identities = 270/742 (36%), Positives = 377/742 (50%), Gaps = 145/742 (19%)
Query: 1 MGVPKFFRYISERYPCLSEVVRE------------YQIP--------EFDNLYLDMNGII 40
MGVP FFR++S +YP + E Y+ P EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGII 60
Query: 41 HNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGR 100
H C+HP D P + E ++ IF I+ LF +++P+KL +MAIDGVAPRAKMNQQR R
Sbjct: 61 HPCTHPEDK-PAPK-NEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSR 118
Query: 101 RFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160
RFR+AKE TEKR + ++
Sbjct: 119 RFRAAKET---------------TEKRLEIARIR-------------------------- 137
Query: 161 RRFRSAKEAEVLEQKAKEKGERLPTEK----RFDSNCITPGTPFMCRLHQQLRYFVKLKI 216
E+L +G +LP EK FDSNCITPGTPFM RL + L YFV +
Sbjct: 138 --------EELL-----SRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQ 184
Query: 217 TTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLD 276
+ WK + VILS PGEGEHKIMDYIR +++PD++PN +H L G D
Sbjct: 185 NNNP---------AWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGAD 235
Query: 277 ADLIMLGLCTHEPYFSLLREEV------------KFNTKSNKG-GSQIVTP--------- 314
ADLIMLGL THEP F+++REE F + +K G P
Sbjct: 236 ADLIMLGLATHEPNFTIIREEFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDV 295
Query: 315 ---EETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPN 371
E KF + LS++R+YL+ L+ P L F +S E +DDWV M F +GNDF+P+
Sbjct: 296 PIGAEVKFIFVRLSVLREYLKQ---TLEMPN-LPFEYSFERALDDWVFMCFFVGNDFLPH 351
Query: 372 LPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYA 431
LP L I GA+ L ++Y++ + GY+ + G +NL R + +T L + + + F+ +
Sbjct: 352 LPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQ- 410
Query: 432 DIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDG-TEEVLNYANYEEYYYS 490
+ ++F K +E + D +L ++ G + + NY+E +
Sbjct: 411 -------RREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNSQQRSVGNYKEEAAA 463
Query: 491 DEDEEWRTNFFSEFGQH----------------KTDYYHYKLDYAKVTNEVLRDQAECYI 534
+ + RT+ + K YY K D A + A Y+
Sbjct: 464 LRNRK-RTSDMANLDDEDEEENNDEVRLWEDGFKDRYYESKFDVAPGNQQFRYAVALQYV 522
Query: 535 RAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMG-EPFLPFQQLLAVLP 593
R + W L YYY GC SW+WY+P+HYAP+ SD + L+ +E G +PF P +QL+ V P
Sbjct: 523 RGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFP 582
Query: 594 AASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMD 653
AAS +PEP+ LM+ SPI+++YPE+F DLNGKK W+ V L+PF+DE +L KA+
Sbjct: 583 AASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALV 642
Query: 654 AVEHLLTDEERSRNRHGPMLVY 675
LT EE RN+ G +Y
Sbjct: 643 PYYDQLTGEEVKRNKRGDNYLY 664
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 255/725 (35%), Positives = 372/725 (51%), Gaps = 145/725 (20%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREYQ--------IP-----------EFDNLYLDMNGII 40
MGVP F+R++++RYP +S+VV E IP EFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60
Query: 41 HNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGR 100
H C HP T +F+ +F YI+ LF +++P+K+ ++AIDGVAPRAKMNQQR R
Sbjct: 61 HPCFHPEGKPA--PATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSR 118
Query: 101 RFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160
RFR+AK+A E + +
Sbjct: 119 RFRAAKDAAEAEAEEE-------------------------------------------- 134
Query: 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDK 220
R R E E AKEK E DSN ITPGTPFM L L+Y+++ ++ +
Sbjct: 135 -RLRKDFEMEGQILSAKEKAETC------DSNVITPGTPFMAILSVALQYYIQSRLNHNP 187
Query: 221 LWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLI 280
W+ V VILS PGEGEHKIM YIR ++ P ++PN RHCLYGLDADLI
Sbjct: 188 ---------GWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
Query: 281 MLGLCTHEPYFSLLREEVKF----------------------NTKSNKGGSQIVTPEETK 318
ML L THE +FS+LRE + + + SN + I + K
Sbjct: 239 MLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAADIPI-HKKK 297
Query: 319 FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHII 378
+ L++ ++R+YL+ E P +++F E IIDD+V + F +GNDF+P++P L I
Sbjct: 298 YQFLNIWVLREYLQYELAIPDPPFMINF----ERIIDDFVFLCFFVGNDFLPHMPTLEIR 353
Query: 379 NGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG 438
GA+ LL VY++ + GY+ + G + L R E F+ +A + + F+++ Q ++
Sbjct: 354 EGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMD- 412
Query: 439 KMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRT 498
++ K++S+ DP + + DD + L Y+E YY+++
Sbjct: 413 ------NNEEMKQRSRR-DPS-----EVPPEPIDDKIK--LGEPGYKERYYAEK------ 452
Query: 499 NFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHH 558
FS +T+ ++ +D Y+ + W YYY G SW W+YP+H
Sbjct: 453 --FSTTNPEETE-------------QIKQDMVLKYVEGLCWVCRYYYQGVCSWQWFYPYH 497
Query: 559 YAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEY 618
YAP+ SD+K+ L + + +GEPF PF QL+ LPAAS LP Y+ LMT +SPIL++
Sbjct: 498 YAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKLMTDPSSPILKF 557
Query: 619 YPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYS 678
YP +F D+NGK+ W+ + +PFI+E L+ A +E LT EE+ RN L+Y +
Sbjct: 558 YPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLYVHP 617
Query: 679 NVNLG 683
LG
Sbjct: 618 AHPLG 622
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1
Length = 949
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 254/770 (32%), Positives = 359/770 (46%), Gaps = 179/770 (23%)
Query: 1 MGVPKFFRYISERYP-----CLSEVVREYQIPEFDNLYLDMNGIIH--NCSHPNDNDPHF 53
MGVP FFR++S +YP C+ E +E NG+ + S PN N+ F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAKE------------CNGVKASVDTSKPNPNEVEF 48
Query: 54 RITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQ 113
++ D+ I+ P E
Sbjct: 49 ----DNLYLDMNG---IIHPCTHP----------------------------------ED 67
Query: 114 KAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA-E 170
K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE E
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGME 127
Query: 171 VLEQKAK------EKGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKL 221
E+K K KG LP E+ RFDSNCITPGT FM L + LRY++ ++ +D
Sbjct: 128 AAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDP- 186
Query: 222 WKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIM 281
WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADLIM
Sbjct: 187 --------GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 238
Query: 282 LGLCTHEPYFSLLREEVKFNTK-----SNKGGSQI--------------------VTPEE 316
LGL THEP+F+++REE K N N+ G ++ + E
Sbjct: 239 LGLATHEPHFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASE 298
Query: 317 TKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLH 376
+F + L ++R+YLE E L F F E +DDWV M F +GNDF+P+LP L
Sbjct: 299 QEFIFIRLCVLREYLERELTM----ASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLE 354
Query: 377 IINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD---- 432
I GA+ L +Y+ V+ GY+ E G++NL+R + + + + F+++ D
Sbjct: 355 IREGAIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNF 414
Query: 433 ---------------------IQYLEGKMGKK-------------FSDVFHKEKSKEM-- 456
Q+ +G + F H ++ M
Sbjct: 415 KRRQKEKKKRMKRDHPSFIPGGQFSPQALGNRSSPQAISNPRQTAFEMRMHDRQNSTMSS 474
Query: 457 ---------DPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQH 507
P A IK +D D E N +E W+ ++
Sbjct: 475 PNTSLNSDGSPSPARGIKRKSEDSDSEPEPEDNIRLWE--------SGWKQRYYKN---- 522
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K D + R + Y+ + W L YYY GC SW+WYYP HYAP+ SD +
Sbjct: 523 -------KFDVDASDEKFRRKVVQSYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFE 575
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LMT S I+++YPE+FA D
Sbjct: 576 GIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAID 635
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYT 676
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G +++
Sbjct: 636 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFV 685
>sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
Length = 1020
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/640 (36%), Positives = 334/640 (52%), Gaps = 121/640 (18%)
Query: 128 FDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGER--- 182
FD+I F P+KL +MAIDGVAPRAKMNQQR RRFRSAK+A + + E
Sbjct: 82 FDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFER 141
Query: 183 ----LPTE---KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVC 235
LP + + FDSN ITPGT FM L L+Y+V L++ D WK++
Sbjct: 142 EGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHLRLNHDV---------GWKNIK 192
Query: 236 VILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLR 295
VILS PGEGEHKIM YIR ++ P ++PN RHCLYGLDADLIMLGL THE +FS+LR
Sbjct: 193 VILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILR 252
Query: 296 EEV----------------------------KFNTKSNKGGSQIVTPEETKFFLLHLSLM 327
E V + KG + +F LH+ ++
Sbjct: 253 EVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQF--LHIWVL 310
Query: 328 RDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYK 387
R+YLELE ++ P F +E I+DD++ + F +GNDF+P++P L I GA+ LL
Sbjct: 311 REYLELEM-RIPNP---PFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMA 366
Query: 388 VYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYL--------EGK 439
VY++ + DGY+ +G NLKR E+F+ + SF+ + F+++ Q GK
Sbjct: 367 VYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVKRDKAGK 426
Query: 440 MGKKFSDVFHKEKSKEMDPDLAALIKATDDDY-----------DDGTE------------ 476
K+ D ++ + PDL + + + +DG
Sbjct: 427 ATKRMDD-----EAPTVQPDLVPVARFSGSRLASAPTPSPFQSNDGRSAPHQKVRRLSPG 481
Query: 477 -----EVLNYANYEEYYYSDEDEEWRTNFFSEFGQHKTDYY------------------- 512
+++ N E + EE +T E + K+D +
Sbjct: 482 SSVGAAIVDVENSLESDERENKEELKTK-LKELIREKSDAFNSDTTEEDKVKLGQPGWRE 540
Query: 513 -HYKLDYAKVTNE----VLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
+Y+ ++ VT E V +D Y + W +HYY G SW W+YP+HYAP+ SD+K
Sbjct: 541 RYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLK 600
Query: 568 DFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDL 627
D +++K+E+G PF PF QLL V PAAS LPE Y+ LMT NSPI+++YP +F D+
Sbjct: 601 DLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDM 660
Query: 628 NGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
NGK+ W+ + +PFIDE +L++A+ VE LTDEE+ RN
Sbjct: 661 NGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRN 700
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 78/122 (63%), Gaps = 21/122 (17%)
Query: 1 MGVPKFFRYISERYPCL--------SEVVREYQIP-----------EFDNLYLDMNGIIH 41
MGVP F+R+++E+YP L + +IP E+DNLYLDMNGIIH
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60
Query: 42 NCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRR 101
C HP D T +++FQ +F YI+ LF M++P+KL +MAIDGVAPRAKMNQQR RR
Sbjct: 61 PCFHPEDRPS--PTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
Query: 102 FR 103
FR
Sbjct: 119 FR 120
>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
Length = 1012
Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 217/648 (33%), Positives = 332/648 (51%), Gaps = 115/648 (17%)
Query: 128 FDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEK------ 179
FD+I F P+KL FMAIDGVAPRAKMNQQR RRFR+AK+A + ++
Sbjct: 84 FDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFER 143
Query: 180 -GERLPTE---KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVC 235
G++LP + + FDSN ITPGT FM L LRY++ +++ +D WK++
Sbjct: 144 EGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYIHVRLNSDP---------GWKNIK 194
Query: 236 VILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLR 295
VILS PGEGEHKIM YIR K+ P YNPN HCLYGLDADLIML L THE +FS+LR
Sbjct: 195 VILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIMLSLATHEIHFSILR 254
Query: 296 EEVKFNTKSNK---------------GGSQIVTPE-----------ETKFFLLHLSLMRD 329
E V F + K G + T E + + +++ ++R+
Sbjct: 255 EVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVVKKPYEFVNIWILRE 314
Query: 330 YLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVY 389
YLE + ++ PG +++ +IDD++ + F +GNDF+P++P L I GA+ LL VY
Sbjct: 315 YLEHD---MQIPGAKK---NLDRLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSVY 368
Query: 390 QEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFH 449
+ + Y+ + LNL+ E+F+ + ++ + F +K A +Q ++ S+ F
Sbjct: 369 KNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIF-QKRAQVQ-------QRQSERFR 420
Query: 450 KEKSKEMDPDLAA---------LIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNF 500
++K+++ D A K D D + L+ + +Y D+
Sbjct: 421 RDKARDKARDNARDNAQASRQFSGKLVQLDSLDEVSDSLHSSPSRKYLRLSLDDNIGVAN 480
Query: 501 FSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECY-----------IRAIQWNLHYY----- 544
K + + D ++LRD+ + + + + W YY
Sbjct: 481 VETENSLKAEELDNEEDLKFKLKKLLRDKGDGFRSGNGEQDKVKLNKVGWRERYYEEKFA 540
Query: 545 -----------------YNGCVSW------------SWYYPHHYAPYISDIKDFSHLNLK 575
Y + W +W+YP+HYAP+ SD+K L++K
Sbjct: 541 AKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKGLEKLDIK 600
Query: 576 YEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWE 635
+E+G PF PF QLLAVLP+AS LPE Y++LMT +SPI ++YP +F D+NGK+ W+
Sbjct: 601 FELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSPIADFYPADFEIDMNGKRYSWQ 660
Query: 636 AVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLG 683
+ +PF++E +L++A VE LT+EE RN +++ ++ LG
Sbjct: 661 GISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLFVVASHPLG 708
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 78/124 (62%), Gaps = 23/124 (18%)
Query: 1 MGVPKFFRYISERYPC-LSEVVRE---------YQIP-----------EFDNLYLDMNGI 39
MGVP F+R++ +RYP + EV+ E IP E+DNLYLDMNGI
Sbjct: 1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60
Query: 40 IHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRG 99
IH C HP D TE +FQ +F YI+ LF M++P+KL FMAIDGVAPRAKMNQQR
Sbjct: 61 IHPCFHPEDKPSPTTFTE--VFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRA 118
Query: 100 RRFR 103
RRFR
Sbjct: 119 RRFR 122
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 326 bits (836), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 219/311 (70%), Gaps = 18/311 (5%)
Query: 130 FITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRF 189
F T+K PKK+F+MAIDGVAPRAKMNQQR RRFR+A +AE +KA E G+ +P + F
Sbjct: 72 FQTIK---PKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGDEIPKGEPF 128
Query: 190 DSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEH 249
DSN ITPGT FM +L + L+YF+ KI+ D W++V +I SGHE PGEGEH
Sbjct: 129 DSNSITPGTEFMAKLTKNLQYFIHDKISNDS---------KWREVQIIFSGHEVPGEGEH 179
Query: 250 KIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGS 309
KIM++IR++KS+ D+N N RHC+YGLDADLIMLGL TH P+F+LLREEV F ++++ S
Sbjct: 180 KIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEVTFGRRNSEKKS 239
Query: 310 QIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFI 369
E F+LLHLSL+R+Y+ELEF ++ + + F ++ E I+DD++L+ F+IGNDF+
Sbjct: 240 L----EHQNFYLLHLSLLREYMELEFKEIADE--MQFEYNFERILDDFILVMFVIGNDFL 293
Query: 370 PNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
PNLPDLH+ GA P+L + ++E L DGYINE G +NLKR +L L+ F+ F +
Sbjct: 294 PNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEKD 353
Query: 430 YADIQYLEGKM 440
D+++ ++
Sbjct: 354 DIDVEWFNKQL 364
Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 237/804 (29%), Positives = 383/804 (47%), Gaps = 58/804 (7%)
Query: 491 DEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVS 550
+E E +T + F + K +YYH KL + + E +RD A+ Y+ +QW L+YYY GC S
Sbjct: 495 EELETEKTIYNERFERWKHEYYHDKLKFTTDSEEKVRDLAKDYVEGLQWVLYYYYRGCPS 554
Query: 551 WSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTL 610
WSWYYPHHYAP ISD+ ++++++ +PF PFQQL+AVLP SK L+P ++ LM
Sbjct: 555 WSWYYPHHYAPRISDLAKGLDQDIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYD 614
Query: 611 ENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
E SPI ++YP E D NGK DWEAVVLI F+DE +LI+AM L+ EE++RN+ G
Sbjct: 615 EQSPIHDFYPAEVQLDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFG 674
Query: 671 PMLVYTYSNV--NLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKL 728
L+Y+++ NL + F I NH VEK I + +++R GL + L
Sbjct: 675 KDLIYSFNPQVDNLYKSPLGGIFSDIEHNHCVEKEYIT--IPLDSSEIRYGLLPNAKLGA 732
Query: 729 -YVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII-VQD--KVQVPSLKQVADQILGK 784
+ FPTL + FT +E + VFQQPS+ +S+++ + D K +L+ + + L K
Sbjct: 733 EMLAGFPTLLSLPFTSSLEYNETMVFQQPSKQQSMVLQITDIYKTNNVTLEDFSKRHLNK 792
Query: 785 TIFINYPHLIEIRVQAVATKDSRISFD-------KNSGPVFERAAKDMQDAFQLSKKSIT 837
I+ +P+L E ++ V+ D + ++ K G + + A + F K S+
Sbjct: 793 VIYTRWPYLRESKL--VSLTDGKTIYEYQESNDKKKFGFITKPAETQDKKLFNSLKNSML 850
Query: 838 DGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQ-----RTFIRSTVTYAYQSAV 892
Y + V IG P+E+ F G V +TF + Y Q V
Sbjct: 851 RMYAKQKAVKIG---------PMEAIATVFPVTGLVRDSDGGYIKTFSPTPDYYPLQLVV 901
Query: 893 LNLQQARESLEYKT---IDEIFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFK-V 948
++ E + + I+E F + L + YG + + I + K +
Sbjct: 902 ESVVNEDERYKERGPIPIEEEFPLNSKVIFLGDYAYGGETTIDGYSSDRRLKITVEKKFL 961
Query: 949 QQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIG 1008
EP + D Y PSY V+ + + PL LS+ T I D+T K N+G
Sbjct: 962 DSEPTIGKERLQMDHQAVKYYPSYIVSKNMHLHPLFLSKITSKFMITDAT---GKHINVG 1018
Query: 1009 LNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLR 1068
+ +KF ++++V+G+ RR+ + W Y+ + L+K Y + FP+ F F +DI +
Sbjct: 1019 IPVKFEARHQKVLGYARRN--PRGWEYSNLTLNLLKEYRQTFPDFF-FRLSKVGNDIPVL 1075
Query: 1069 DDVFPHQGEQRVAQIVS----WLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE 1124
+D+FP + ++ WLK V ++ + ++ +H + +E
Sbjct: 1076 EDLFPDTSTKDAMNLLDGIKQWLKYVSSKFIAVSLESDSLTKTSIAAVEDHIMKYAANIE 1135
Query: 1125 ----KQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGI 1180
KQ+ V + P+ + L KF L DRVV I+D VP+ +GT++G
Sbjct: 1136 GHERKQLAK-VPREAVLNPRSSFALLR---SQKFDLGDRVVYIQDSGKVPIFSKGTVVGY 1191
Query: 1181 VQGETSYDAMYDVVFDKPFPHGVKI--RCSESRGYRMPAQAMINLSYGERLCGNSNPHVK 1238
+S V+FD G R +RG + A ++N++ + +S K
Sbjct: 1192 TTLSSSLSIQ--VLFDHEIVAGNNFGGRLRTNRGLGLDASFLLNIT-NRQFIYHSKASKK 1248
Query: 1239 NINVMQSRGERNTNYAQVTRQPQR 1262
+ + RN N + P +
Sbjct: 1249 ALEKKKQSNNRNNNTKTAHKTPSK 1272
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 102/129 (79%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MG+PKFFRYISER+P + +++ QIPEFDNLYLDMN I+HNC+H ND+D R+TE+++
Sbjct: 1 MGIPKFFRYISERWPMILQLIEGTQIPEFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEV 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F I YI+ LF+ I+PKK+F+MAIDGVAPRAKMNQQR RRFR+A +AE +KA E G+
Sbjct: 61 FAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGD 120
Query: 121 RLPTEKRFD 129
+P + FD
Sbjct: 121 EIPKGEPFD 129
>sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAT1 PE=3 SV=3
Length = 968
Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 184/462 (39%), Positives = 255/462 (55%), Gaps = 90/462 (19%)
Query: 1 MGVPKFFRYISERYP-CLSEVVRE---------YQIP----EFDNLYLDMNGIIHNCSHP 46
MGVP FR++S +YP +S VV E Y+ P E DNLYLDMNGI+H CSHP
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKYENPNPNGEIDNLYLDMNGIVHPCSHP 60
Query: 47 NDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAK 106
P TE ++F DIF Y + + M +P+K+ +A+DGVAPRAKMNQQR RRFR+AK
Sbjct: 61 EHKKPP--ETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAK 118
Query: 107 EAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSA 166
+AE+ K ++L E Q+R R
Sbjct: 119 DAEL-------KAKQLEIEV------------------------------QERELR---- 137
Query: 167 KEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTL 226
E++ K K K++DSN ITPGTPFM RL + LRY+V K+++D
Sbjct: 138 --GEIINDAIKGK-------KQWDSNAITPGTPFMDRLAEALRYWVAYKLSSDP------ 182
Query: 227 SLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCT 286
W ++ VI+S PGEGEHK+M +IR +S P Y+PN +HC+YGLDADLI LGL T
Sbjct: 183 ---GWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIFLGLAT 239
Query: 287 HEPYFSLLREEV------KFNTK-----SNKGGSQIVTPEETKFFLLHLSLMRDYLELEF 335
HEP+F +LRE+V KF K +N G + ++ F LH++++R+YL++E
Sbjct: 240 HEPHFRVLREDVFASQDKKFTIKDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVEL 299
Query: 336 GKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPT 395
+ +SFPF +E IDDWV + F GNDF+P+LP L + + + L + ++ LP
Sbjct: 300 FTPR----MSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPI 355
Query: 396 LDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
L Y+ G LNLK E ++ LA + E F+ K+A Q E
Sbjct: 356 LKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRRE 397
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 116/181 (64%), Gaps = 8/181 (4%)
Query: 490 SDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCV 549
SD+ + W + + + K +HY+ D + + RD Y+ I W YYY GC
Sbjct: 536 SDDIKLWEPGYNKRYYEAK---FHYQSD--EEIEQTKRDVVRHYVEGIAWVALYYYQGCP 590
Query: 550 SWSWYYPHHYAPYISDIKDFSHL---NLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQN 606
SW+WY+P+HYAP+ +D + L +K+++GEPF PF+QL++VLPAAS LP+ +++
Sbjct: 591 SWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVFRD 650
Query: 607 LMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSR 666
LM+ +S I+++YPEEF D+NGKK W+ + L+PFIDE +L+ A+ LLT +E+SR
Sbjct: 651 LMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEKSR 710
Query: 667 N 667
N
Sbjct: 711 N 711
>sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1
PE=3 SV=4
Length = 1003
Score = 311 bits (798), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/457 (38%), Positives = 250/457 (54%), Gaps = 92/457 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIP---------------EFDNLYLDMNGIIHNCSH 45
MGVP FR++S +YP + V E + E DNLYLDMNGI+H CSH
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEDDVTQEIGAAQFSDPNPNGELDNLYLDMNGIVHPCSH 60
Query: 46 PNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSA 105
P P TE ++F D+F Y + + M +P+K+ +A+DGVAPRAKMNQQR RRFRSA
Sbjct: 61 PEHKLPP--ETEDEMFLDVFKYTDRVLLMARPRKVLMIAVDGVAPRAKMNQQRSRRFRSA 118
Query: 106 KEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRS 165
++A++ A E+ ER E+
Sbjct: 119 QDAKI----AHEEKERQIRER--------------------------------------- 135
Query: 166 AKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDT 225
E + + + + +K +DSN ITPGTPFM L Q LRY+V K+ TD
Sbjct: 136 -------ESRGESIDDAIKGKKSWDSNAITPGTPFMDSLAQALRYWVAYKLATDP----- 183
Query: 226 LSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLC 285
W ++ VI+S PGEGEHK+M +IR +S P+Y+PN +HC+YGLDADLI LGL
Sbjct: 184 ----GWANLQVIISDATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLIFLGLA 239
Query: 286 THEPYFSLLREEVKFN-TKSNKGGSQIVTPEETK-----------FFLLHLSLMRDYLEL 333
THEP+F +LRE+V N ++ + Q+ ++ K F LH++++R+YLE+
Sbjct: 240 THEPHFRVLREDVFANQSRQMRISDQLSMTQDQKDSIAEQDAKKPFLWLHVNVLREYLEI 299
Query: 334 EFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVL 393
E L P LSFPF +E IDDWV M F +GNDF+P+LP L + + + +L ++ +L
Sbjct: 300 E---LYNPH-LSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRDNGIDILVNCWKRML 355
Query: 394 PTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
P L YI G LNL+ EK L+ L+ + E FR+++
Sbjct: 356 PKLRDYITCDGNLNLESVEKLLSSLSYKEDEIFRKRH 392
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 105/149 (70%), Gaps = 4/149 (2%)
Query: 523 NEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHL----NLKYEM 578
N++ RD CY+ I W L YYY GC SW WYYP+HYAP+ +D + + + +K+ +
Sbjct: 564 NKIRRDMVRCYLEGISWVLLYYYQGCPSWQWYYPYHYAPFAADFVNINDIIGEQGIKFTL 623
Query: 579 GEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVV 638
GEPF P++QL++VLPAAS LPE + LM+ +S IL++YPEEF D+NGKK W+ +
Sbjct: 624 GEPFKPYEQLMSVLPAASGHNLPEVLRILMSDPSSEILDFYPEEFQIDMNGKKMSWQGIA 683
Query: 639 LIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
L+PFIDE +L++A++ HLLTD+ER RN
Sbjct: 684 LLPFIDENRLLEALEKRYHLLTDDERERN 712
>sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAT1 PE=1 SV=3
Length = 1006
Score = 303 bits (777), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 245/461 (53%), Gaps = 96/461 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQ--------IP----------EFDNLYLDMNGIIHN 42
MGVP FFR++S +YP + V E Q +P E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNGELDNLYLDMNGIVHP 60
Query: 43 CSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRF 102
CSHP + P TE ++ +F Y + M +P+K+ MA+DGVAPRAKMNQQR RRF
Sbjct: 61 CSHPENKPPP--ETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRF 118
Query: 103 RSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRR 162
RSA++A++ E +A+E+ R E
Sbjct: 119 RSARDAQI-ENEAREEIMRQREEV------------------------------------ 141
Query: 163 FRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLW 222
E+++ + K K +DSN ITPGTPFM +L LRY+ K+ TD
Sbjct: 142 ------GEIIDDAVRNK-------KTWDSNAITPGTPFMDKLAAALRYWTAFKLATDP-- 186
Query: 223 KDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIML 282
WK++ VI+S PGEGEHKIM++IR ++ P+YNPN HC+YGLDADLI L
Sbjct: 187 -------GWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFL 239
Query: 283 GLCTHEPYFSLLREEV--KFNTKSNKGGSQIVTPEETKFFL-----------LHLSLMRD 329
GL THEP+F +LRE+V + N K N I EE K FL LH++++R+
Sbjct: 240 GLATHEPHFKILREDVFAQDNRKRNNLKDTINMTEEEKQFLQKQNSEQPFLWLHINVLRE 299
Query: 330 YLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVY 389
YL E L PG L F F +E IDDWV M F GNDF+P+LP L + ++ +L ++
Sbjct: 300 YLSAE---LWVPG-LPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIW 355
Query: 390 QEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+ VLP L Y+ G LNL E L L S + + F+ ++
Sbjct: 356 KVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRH 396
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 121/181 (66%), Gaps = 3/181 (1%)
Query: 503 EFGQHKTDYYHYKLDYAKVTNEVLR-DQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAP 561
E G H+ YY K E LR D +CYI + W L YYY GC SW+W+YP+HYAP
Sbjct: 601 EPGYHER-YYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYHYAP 659
Query: 562 YISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPE 621
+D FSHL +K+E G PFLP++QL++VLPAAS LP+ +++LM+ +S I+++YPE
Sbjct: 660 LATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSEPDSEIIDFYPE 719
Query: 622 EFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG-PMLVYTYSNV 680
EF D+NGKK W+ + L+PFID+ +L+ A+ A LL+D ER+RN G P+L+ + N
Sbjct: 720 EFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPVLLISNKNA 779
Query: 681 N 681
N
Sbjct: 780 N 780
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3
SV=4
Length = 1058
Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 248/473 (52%), Gaps = 105/473 (22%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREY-------QIP-----------EFDNLYLDMNGIIH 41
MGVP FR++S +YP +S V+ E +IP E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEELPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVH 60
Query: 42 NCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRR 101
C+HP P E+++ +IF Y + + M++P+KL +A+DGVAPRAKMNQQR RR
Sbjct: 61 PCTHPEGKPP--PANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARR 118
Query: 102 FRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGR 161
FRSA+EA ++A EK E R + +Q G
Sbjct: 119 FRSAQEA----KEADEKKEEF-----------------------------RKMLAKQNGN 145
Query: 162 RFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKL 221
+ + EV+ +K +DSN ITPGTPFM L LRY++ K+ TD
Sbjct: 146 KVDEELQEEVV-------------KKTWDSNVITPGTPFMDILAASLRYWIAYKLNTDP- 191
Query: 222 WKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIM 281
W+ + +I+S PGEGEHKIM++IR ++ P+++PN RH +YGLDADLIM
Sbjct: 192 --------AWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDADLIM 243
Query: 282 LGLCTHEPYFSLLREEVKFNTKSNKG----GSQIVTPEETK------------------- 318
LGL THEP+F +LRE+V F + G Q EE +
Sbjct: 244 LGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEKNGEFDEKQKGSSL 303
Query: 319 --FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLH 376
F LH+S++R+YL E +P FPF +E +DDWV M F +GNDF+P+LP L
Sbjct: 304 KPFIWLHVSILREYLAAELYVPHQP----FPFDLERALDDWVFMCFFVGNDFLPHLPSLD 359
Query: 377 IINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
I + L ++++ +P + GY+ E G+++LKR + L LA + FR +
Sbjct: 360 IRENGIDTLIAIWRDNIPVMGGYLTEDGHVDLKRAQLILQGLAKQEDAIFRRR 412
Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 102/160 (63%)
Query: 511 YYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFS 570
YY K E A Y + W L YY+ GC SW+WYYP+HYAP+ +D D
Sbjct: 608 YYEQKFGVDPQDKEFRHKVARAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIG 667
Query: 571 HLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGK 630
+ + ++ G PF PF+QL+ VLPA+S +P+ + +LM+ +S I+++YPE+FA DLNGK
Sbjct: 668 DMEITFDKGVPFKPFEQLMGVLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGK 727
Query: 631 KQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
K W+ V+L+PFIDE +L+ AM+ LLT++E+ RN G
Sbjct: 728 KFAWQGVILLPFIDEKRLLAAMEKKYPLLTEDEKLRNSVG 767
>sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3
SV=3
Length = 1018
Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 179/461 (38%), Positives = 248/461 (53%), Gaps = 96/461 (20%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREYQ-------IP----------EFDNLYLDMNGIIHN 42
MGVP FFR++S +YP +S V+ E Q +P E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEPQQLVDGVALPIDYAGPNPNGELDNLYLDMNGIVHP 60
Query: 43 CSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRF 102
CSHP + P TE + +F Y + M +P+K+ +A+DGVAPRAKMNQQR RRF
Sbjct: 61 CSHPENKPPP--ETEDDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQQRSRRF 118
Query: 103 RSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRR 162
RSA++AE+ E +A+E+ R +Q G
Sbjct: 119 RSARDAEI-ENEAREEIMR---------------------------------QKEQLG-- 142
Query: 163 FRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLW 222
++++ K K K +DSN ITPGTPFM +L LRY+ K+ TD
Sbjct: 143 -------QIIDDSVKNK-------KTWDSNAITPGTPFMDKLAIALRYWTAFKLATDP-- 186
Query: 223 KDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIML 282
WK++ VI+S PGEGEHKIM++IR ++ P+YNPN HC+YGLDADLI L
Sbjct: 187 -------GWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFL 239
Query: 283 GLCTHEPYFSLLREEV--KFNTKSNKGGSQIVTPEETK-----------FFLLHLSLMRD 329
GL THEP+F +LRE+V + N K N I +E K F LH+S++R+
Sbjct: 240 GLATHEPHFKILREDVFAQDNRKRNNVKDTIDMTDEEKDLIRKQDSEKPFLWLHISVLRE 299
Query: 330 YLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVY 389
YL E K P FPF +E IDDWV M F GNDF+P+LP L + ++ +L ++
Sbjct: 300 YLSAELWTPKLP----FPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIW 355
Query: 390 QEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+ +LP L Y+ G LNL+ E L +L + + + F+ ++
Sbjct: 356 KSILPRLKTYMTCDGKLNLESVEMVLKELGNREGDIFKTRH 396
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 530 AECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLL 589
+CYI + W L YYY GC SW+WYYP+HYAP D DF L++K+E+GEPFLP++QL+
Sbjct: 628 VKCYIEGVSWVLMYYYQGCASWTWYYPYHYAPLAEDFVDFHDLDIKFELGEPFLPYEQLM 687
Query: 590 AVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLI 649
+VLPAAS LPE ++ LM+ E+S I+++YP EF D+NGKK W+ + L+PFIDE +L+
Sbjct: 688 SVLPAASGHNLPEVFRPLMSSEDSEIIDFYPTEFPIDMNGKKMSWQGIALLPFIDETRLL 747
Query: 650 KAMDAVEHLLTDEERSRN-RHGPMLVYTYSNVN 681
A L+++E+ RN R+ P+L+ + NVN
Sbjct: 748 TATRNQYKFLSEDEKRRNTRNDPVLLISNKNVN 780
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 182/461 (39%), Positives = 247/461 (53%), Gaps = 96/461 (20%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREY-------QIP----------EFDNLYLDMNGIIHN 42
MGVP FFR++S +YP +S V+ EY Q+P E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEYPVIEDGVQLPLDYSSANPNGELDNLYLDMNGIVHP 60
Query: 43 CSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRF 102
CSHP + P TE ++ +F Y + M +P+K+ +A+DGVAPRAKMNQQR RRF
Sbjct: 61 CSHPENKPPP--ETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRF 118
Query: 103 RSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRR 162
RSA++A+ L+ +A+E+ R +R D+
Sbjct: 119 RSARDAK-LQNEAREQVLR----EREDY-------------------------------- 141
Query: 163 FRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLW 222
E +++ K K K +DSN ITPGTPFM +L LRY+ K+ TD
Sbjct: 142 ------GETIDENVKSK-------KTWDSNAITPGTPFMDKLATALRYWTSFKLATDP-- 186
Query: 223 KDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIML 282
WK++ +I+S PGEGEHKIM++IR ++ YNPN HC+YGLDADLI L
Sbjct: 187 -------GWKNLQIIISDATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADLIFL 239
Query: 283 GLCTHEPYFSLLREEVKFNTKSNKGGSQ--IVTPEETK-----------FFLLHLSLMRD 329
GL THEP+F +LRE+V N K Q I EE K F LH+S++R+
Sbjct: 240 GLATHEPHFKILREDVFANNNYKKPKPQDMINLSEEEKQQLIQQDSEKPFLWLHISVLRE 299
Query: 330 YLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVY 389
YL E L P LSF F E IDDWV M F GNDF+P+LP L + ++ +L ++
Sbjct: 300 YLSAE---LAIPH-LSFQFDFERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILVDIW 355
Query: 390 QEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+ VLP Y+ G LNL+ E L +L + + F++KY
Sbjct: 356 KTVLPKTKTYLTCDGTLNLEPVEALLEQLGDRETDLFKKKY 396
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 124/195 (63%), Gaps = 6/195 (3%)
Query: 489 YSDEDEEWRTNFFSEFGQHKTDYYHYKLDY-AKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
+ D DE R E G H YY +K AK + +D CY+ I W L YYY G
Sbjct: 581 FIDTDESVR---LYEPGYHDR-YYQHKFHVPAKDIPALQKDVIRCYVEGISWVLLYYYQG 636
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
C SW+WYYP+HYAP+ D K+ +L++ +++GEPFLP++QL++VLPAAS LPE ++ L
Sbjct: 637 CASWTWYYPYHYAPFAQDFKNIKNLDIHFDLGEPFLPYEQLMSVLPAASGHALPEIFRPL 696
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
M+ NS I+++YPEEF D+NGKK W+ + L+PFIDE +L+K + L+D E++RN
Sbjct: 697 MSDPNSEIIDFYPEEFPVDMNGKKMAWQGIALLPFIDETRLLKTVREQYSKLSDSEKARN 756
Query: 668 -RHGPMLVYTYSNVN 681
R L+ + NVN
Sbjct: 757 VRKKDALLISNKNVN 771
>sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4
Length = 945
Score = 301 bits (770), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 174/462 (37%), Positives = 244/462 (52%), Gaps = 98/462 (21%)
Query: 1 MGVPKFFRYISERYPCL--------SEVVREYQIP----------EFDNLYLDMNGIIHN 42
MGVP FFR++S +YP + +VV ++P E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVIEDTPQVVDGVKLPIDYSAANPNGELDNLYLDMNGIVHP 60
Query: 43 CSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRF 102
CSHP +N P TE ++ +F Y + M +P+K+ +A+DGVAPRAKMNQQR RRF
Sbjct: 61 CSHP-ENKPAPE-TEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRSRRF 118
Query: 103 RSAKEAEVL-EQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGR 161
RSA++A++ E+KA+ ER
Sbjct: 119 RSARDAKLANEEKARVLAER---------------------------------------- 138
Query: 162 RFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKL 221
E+++ K K K +D+N ITPGTPFM +L LRY+ K+ TD
Sbjct: 139 ----EAYGEMIDDAVKAK-------KSWDTNAITPGTPFMDKLAAALRYWTSFKLATDP- 186
Query: 222 WKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIM 281
WK++ VI+S PGEGEHKIM++IR ++ YNPN HC+YGLDADLI
Sbjct: 187 --------GWKNLQVIISDATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIF 238
Query: 282 LGLCTHEPYFSLLREEV-------------KFNTKSNKGGSQIVTPEETKFFLLHLSLMR 328
LGL THEP+F +LRE+V + + + + I E F LH+S++R
Sbjct: 239 LGLATHEPHFKILREDVFAQDNRRRPRQHDMMDMSAEEKQALIEQDAEKPFLWLHVSVLR 298
Query: 329 DYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKV 388
+YL E + P F F +E IDDWV M F GNDF+P+LP L + ++ +L +
Sbjct: 299 EYLSAELLVPRLP----FHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVRENSIDILVDI 354
Query: 389 YQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
++ VLP+L Y+ G LNLK EK L +L + + + F++KY
Sbjct: 355 WKAVLPSLKTYLTCDGKLNLKGVEKVLAQLGNRESDIFKKKY 396
Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 117/179 (65%), Gaps = 2/179 (1%)
Query: 511 YYHYKLDYAKVTNEVLRDQA-ECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDF 569
YY K + + LR + Y+ I W L YYY GC SW+WYYP+HYAP+ SD
Sbjct: 594 YYQAKFHVPTGSIDALRKKVVRSYVEGISWVLLYYYQGCPSWTWYYPYHYAPFASDFTGI 653
Query: 570 SHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNG 629
S L++ +++GEPFLP++QL++VLPAAS LP+ +++LM+ S I ++YPEEF D+NG
Sbjct: 654 SDLSVTFDLGEPFLPYEQLMSVLPAASSHNLPDVFRSLMSDPESEIYDFYPEEFPIDMNG 713
Query: 630 KKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN-RHGPMLVYTYSNVNLGTALA 687
+K W+A+VL+PFIDE +L+ A+ LL++ ER+RN R +L+ + N + LA
Sbjct: 714 EKMAWKALVLLPFIDETRLLAAVRQKYPLLSEAERARNVRRDEVLLISNKNTHYERFLA 772
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 249/482 (51%), Gaps = 115/482 (23%)
Query: 1 MGVPKFFRYISERYPCLSEVVRE-------------------YQIP-----EFDNLYLDM 36
MGVP FR++S++YP + E V+E Y+ P E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 37 NGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQ 96
NGI+H C+HP + P TE+++ +IF Y E + M +P+K+ MAIDGVAPRAKMNQ
Sbjct: 61 NGIVHPCTHP-EGRPAPE-TEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQ 118
Query: 97 QRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMN 156
QR RRFR+A+EA E++ +E KLF
Sbjct: 119 QRSRRFRAAQEAADKEEERREA--------------------IKLF-------------- 144
Query: 157 QQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKI 216
E E K +D+N ITPGTPFM L L+Y+V K+
Sbjct: 145 ----------------EAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISLKYWVSHKL 188
Query: 217 TTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLD 276
TTD WKD+ +ILS PGEGEHKIMD+IR +S P ++ N H +YGLD
Sbjct: 189 TTDP---------GWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLD 239
Query: 277 ADLIMLGLCTHEPYFSLLREEV--------------------KFNTKSNK-----GGSQI 311
ADLIML L THEP+F +LRE+V N KS+K +++
Sbjct: 240 ADLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFKDPNVAEV 299
Query: 312 VTPEETK-FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP 370
E+ K F L ++ +R+YL +E L PG + FPF +E IDDW+ M F +GNDF+P
Sbjct: 300 AKTEDPKPFIFLDVACLREYLAVE---LVVPG-MPFPFDLELAIDDWIFMIFFVGNDFLP 355
Query: 371 NLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+LP L I GA+ +L K+++ LP + GY+ G +NL R + L LA + E F+++
Sbjct: 356 HLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRK 415
Query: 431 AD 432
D
Sbjct: 416 DD 417
Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 111/187 (59%), Gaps = 7/187 (3%)
Query: 489 YSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGC 548
Y D+ + W + + YY K E + + Y+ + W L YYY G
Sbjct: 685 YEDDVKLWEPGY-------RERYYEKKFGVKLSEREFIDKVTKSYMEGLCWVLEYYYQGV 737
Query: 549 VSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLM 608
+W W+YP+HYAP+ D +D +++K+E PF PF QLL V PAAS+ LPEP Q LM
Sbjct: 738 PAWDWFYPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLM 797
Query: 609 TLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNR 668
E+SPIL++YP +F D+NGKK W+ V L+PFID+ +L+ A+ + E LL+D+E+ RN
Sbjct: 798 IDEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNS 857
Query: 669 HGPMLVY 675
G +++
Sbjct: 858 WGDNVMF 864
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 249/482 (51%), Gaps = 115/482 (23%)
Query: 1 MGVPKFFRYISERYPCLSEVVRE-------------------YQIP-----EFDNLYLDM 36
MGVP FR++S++YP + E V+E Y+ P E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 37 NGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQ 96
NGI+H C+HP + P TE+++ +IF Y E + M +P+K+ MAIDGVAPRAKMNQ
Sbjct: 61 NGIVHPCTHP-EGRPAPE-TEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQ 118
Query: 97 QRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMN 156
QR RRFR+A+EA E++ +E KLF
Sbjct: 119 QRSRRFRAAQEAADKEEERREA--------------------IKLF-------------- 144
Query: 157 QQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKI 216
E E K +D+N ITPGTPFM L L+Y+V K+
Sbjct: 145 ----------------EAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISLKYWVSHKL 188
Query: 217 TTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLD 276
TTD WKD+ +ILS PGEGEHKIMD+IR +S P ++ N H +YGLD
Sbjct: 189 TTDP---------GWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLD 239
Query: 277 ADLIMLGLCTHEPYFSLLREEV--------------------KFNTKSNK-----GGSQI 311
ADLIML L THEP+F +LRE+V N KS+K +++
Sbjct: 240 ADLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFKDPNVAEV 299
Query: 312 VTPEETK-FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP 370
E+ K F L ++ +R+YL +E L PG + FPF +E IDDW+ M F +GNDF+P
Sbjct: 300 AKTEDPKPFIFLDVACLREYLAVE---LVVPG-MPFPFDLELAIDDWIFMIFFVGNDFLP 355
Query: 371 NLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKY 430
+LP L I GA+ +L K+++ LP + GY+ G +NL R + L LA + E F+++
Sbjct: 356 HLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRK 415
Query: 431 AD 432
D
Sbjct: 416 DD 417
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 111/187 (59%), Gaps = 7/187 (3%)
Query: 489 YSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGC 548
Y D+ + W + + YY K E + + Y+ + W L YYY G
Sbjct: 685 YEDDVKLWEPGY-------RERYYEKKFGVKLSEREFIDKVTKSYMEGLCWVLEYYYQGV 737
Query: 549 VSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLM 608
+W W+YP+HYAP+ D +D +++K+E PF PF QLL V PAAS+ LPEP Q LM
Sbjct: 738 PAWDWFYPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLM 797
Query: 609 TLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNR 668
E+SPIL++YP +F D+NGKK W+ V L+PFID+ +L+ A+ + E LL+D+E+ RN
Sbjct: 798 IDEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNS 857
Query: 669 HGPMLVY 675
G +++
Sbjct: 858 WGDNVMF 864
>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3
SV=3
Length = 1032
Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/473 (36%), Positives = 248/473 (52%), Gaps = 106/473 (22%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREY-------QIP-----------EFDNLYLDMNGIIH 41
MGVP FR++S++YP +S V+ E +IP E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSKKYPKIISSVIEELPQEVNGEEIPVDITGPNPNGEEMDNLYLDMNGIVH 60
Query: 42 NCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRR 101
C+HP P E+++ +IF Y + + M++P+KL +A+DGVAPRAKMNQQR RR
Sbjct: 61 PCTHPEGKPPP--ANEQEMMIEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARR 118
Query: 102 FRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGR 161
FRSA+EA ++K +E F + L AK N +
Sbjct: 119 FRSAQEAREQDEKKQE-------------------FQRML-----------AKQNGDK-- 146
Query: 162 RFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKL 221
EQ +E+ +K +DSN ITPGTPFM L LRY++ K+ TD
Sbjct: 147 -----------EQMLQEE----VIQKTWDSNVITPGTPFMDILAASLRYWIAYKLNTDP- 190
Query: 222 WKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIM 281
W+ + +I+S PGEGEHKIM++IR ++ P+++PN RH +YGLDADLIM
Sbjct: 191 --------AWEKLKIIISDATVPGEGEHKIMEFIRSQRASPEHDPNARHVIYGLDADLIM 242
Query: 282 LGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTP----EETK------------------- 318
LGL THEP+F +LRE+V F + P EE +
Sbjct: 243 LGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQAKEKNGEFDEKGKGATL 302
Query: 319 --FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLH 376
F LH+S++R+YL E +P FPF +E +DDWV M F +GNDF+P+LP L
Sbjct: 303 KPFIWLHVSILREYLAAELYVPHQP----FPFDLERALDDWVFMCFFVGNDFLPHLPSLD 358
Query: 377 IINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
I + L ++++ +P + GY+ + G ++LK+ + L LA + FR +
Sbjct: 359 IREDGIDTLIAIWRDNIPLMGGYLTQDGRVDLKKAQLILQGLAKQEDAIFRRR 411
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 101/160 (63%)
Query: 511 YYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFS 570
YY K E A Y + W L YY+ GC SW+WYYP+HYAP+ +D D
Sbjct: 591 YYEQKFGVDPQDKEFRHKVARAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIG 650
Query: 571 HLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGK 630
+ L +E G PF P++QL+ VLPA+S +P+ + +LMT +S I+++YPE+F DLNGK
Sbjct: 651 DMELSFEKGTPFKPYEQLMGVLPASSNHAIPKVFHSLMTEPDSEIIDFYPEDFPVDLNGK 710
Query: 631 KQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
K W+ VVL+PFIDE +L+ AM LLT++E++RN G
Sbjct: 711 KFAWQGVVLLPFIDEKRLLAAMSKKYPLLTEDEKARNTVG 750
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=rat1 PE=3 SV=3
Length = 1035
Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 171/473 (36%), Positives = 248/473 (52%), Gaps = 107/473 (22%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREY-------QIP-----------EFDNLYLDMNGIIH 41
MGVP FR++S +YP +S V+ E QIP E DNLYLDMNGI+H
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEQIPVDTTRPNPNGEELDNLYLDMNGIVH 60
Query: 42 NCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRR 101
C+HP P E+++ +IF+Y + + M++P+KL +A+DGVAPRAKMNQQR RR
Sbjct: 61 PCTHPEGKPP--PANEQEMMLEIFNYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARR 118
Query: 102 FRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGR 161
FRSA+EA ++A EK E E R F+
Sbjct: 119 FRSAQEA----KEADEKKE----EFRKQFLK----------------------------- 141
Query: 162 RFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKL 221
+S + E+ E+ +K +DSN ITPGTPFM L LRY++ K+ TD
Sbjct: 142 --KSKGDQEIHEEV---------IQKTWDSNVITPGTPFMDILAASLRYWIAYKLNTDP- 189
Query: 222 WKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIM 281
W+ + +I+S PGEGEHKIM+++R ++ P+++PN RH +YGLDADLIM
Sbjct: 190 --------AWEKLKIIISDATVPGEGEHKIMEFVRSQRAAPEHDPNTRHVIYGLDADLIM 241
Query: 282 LGLCTHEPYFSLLREEVKFNTKSNKG----GSQIVTPEETK------------------- 318
LGL THEP+F +LRE+V F + G EE +
Sbjct: 242 LGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNGQFDEKGKGTSL 301
Query: 319 --FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLH 376
F L++S++R+YL +E +P FPF +E +DDWV M F +GNDF+P+LP L
Sbjct: 302 KPFIWLNVSILREYLAVELYVPHQP----FPFDLERALDDWVFMCFFVGNDFLPHLPSLD 357
Query: 377 IINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
I + L ++++ +P + GY+ + G++ K+ + L LA + FR +
Sbjct: 358 IRENGIDTLIAIWRDNIPVMGGYLTKDGHVEFKKAQLILQGLAKQEDAIFRRR 410
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 100/160 (62%)
Query: 511 YYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFS 570
YY K E A Y + W L YY+ GC SW+WYYP+HYAP+ +D D
Sbjct: 596 YYEQKFGVDPQDKEFRHKVARAYAEGLAWVLLYYFQGCPSWNWYYPYHYAPFAADFVDIG 655
Query: 571 HLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGK 630
+ L +E G PF PF+QL+ VLPA+S +PE + +LM S I+++YPE+FA DLNGK
Sbjct: 656 DMELSFEKGTPFKPFEQLMGVLPASSNHAIPEVFHDLMQDPESEIIDFYPEDFAVDLNGK 715
Query: 631 KQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
K W+ V+L+PFIDE +L+ AM+ LL+D+ER RN G
Sbjct: 716 KFAWQGVILLPFIDEKRLLAAMEKKYPLLSDDERHRNTVG 755
>sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rat-1
PE=3 SV=3
Length = 1072
Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 251/475 (52%), Gaps = 108/475 (22%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQ---------IP-----------EFDNLYLDMNGII 40
MG+P FR++S +YP + V E Q IP EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIV 60
Query: 41 HNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGR 100
H CSHP D P + E+++ ++F Y + + M++P+KL +A+DGVAPRAKMNQQR R
Sbjct: 61 HPCSHPEDR-PAPK-DEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSR 118
Query: 101 RFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160
RFR+A+EA +E++ E + F+ L + +Q G
Sbjct: 119 RFRAAREA--MEKE----------EDKQKFVEL---------------------LKKQNG 145
Query: 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDK 220
+ +E+ + +K FDSN ITPGTPFM L LRY+ K+ TD
Sbjct: 146 K-------------PQEEEPVEVVVKKAFDSNSITPGTPFMDILAASLRYWCSYKLNTDP 192
Query: 221 LWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLI 280
W ++ VI+S PGEGEHKIM+++R + P+++PN RH +YGLDADLI
Sbjct: 193 ---------AWANIKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDADLI 243
Query: 281 MLGLCTHEPYFSLLREEVKFNTKS---------NKGGSQIVTPEETK------------- 318
MLGL THEP+F +LRE+V F S KG + E K
Sbjct: 244 MLGLATHEPHFRVLREDV-FAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEKDAVV 302
Query: 319 ----FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPD 374
F LH+S++R+YL +E L PG L F F++E IDDWV M F +GNDF+P+LP
Sbjct: 303 PLKPFIWLHVSILREYLAIE---LDVPG-LPFQFNLERAIDDWVFMCFFVGNDFLPHLPA 358
Query: 375 LHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
L I + L ++++ LP + GY+ + G+ +L+R + + LA + FR +
Sbjct: 359 LEIRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYIMAGLAKQEDAIFRRR 413
Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 95/160 (59%)
Query: 511 YYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFS 570
YY K + + Y + W L YY+ GC SW W+YP+HYAP+ +D D
Sbjct: 591 YYEQKFKVDRKDIDFRHKVGRAYAEGLAWVLEYYFQGCPSWEWFYPYHYAPFAADFVDLG 650
Query: 571 HLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGK 630
+ +K+E G PF+QL++VLPAAS+ +PE + +LM E S I +YP++F DLNGK
Sbjct: 651 KMEIKFEKGRISRPFEQLMSVLPAASRHAIPEVFHSLMLEETSEIRHFYPDDFEIDLNGK 710
Query: 631 KQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
K W+ V L+PFID +L+ AM+ HLL+ E+ RN G
Sbjct: 711 KMAWQGVALLPFIDMPRLLAAMETKSHLLSPEDHLRNAPG 750
>sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAT1 PE=3 SV=3
Length = 1233
Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 241/479 (50%), Gaps = 120/479 (25%)
Query: 1 MGVPKFFRYISERYPCLSEVVRE-------------YQIP-----------EFDNLYLDM 36
MGVP FR++S++YP + V+E +P EFD LYLDM
Sbjct: 1 MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDM 60
Query: 37 NGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQ 96
NGI+H C+HP E + F Y E + M++P++L MAIDGVAPRAKMNQ
Sbjct: 61 NGIVHPCTHPEGKPAPETEEEMMVEV--FAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQ 118
Query: 97 QRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMN 156
QR RRFR+AKE A+EK E
Sbjct: 119 QRSRRFRAAKE-------AREKHEE----------------------------------- 136
Query: 157 QQRGRRFRSAKEAEVLEQKAKEKG---ERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVK 213
++A + E KAK G + +++ +DSN ITPGTPFM L LRY+V
Sbjct: 137 ----------EQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGTPFMDLLAASLRYWVA 186
Query: 214 LKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLY 273
KI +D WKD+ VI+S PGEGEHKIM++IR +S P+++PN +H +Y
Sbjct: 187 QKINSDP---------GWKDIQVIISDASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIY 237
Query: 274 GLDADLIMLGLCTHEPYFSLLREEV-------------------------KFNTKSNKGG 308
GLDADLIML L THEPYF +LRE+V KS +
Sbjct: 238 GLDADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQHD 297
Query: 309 SQIVTPEETK-FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGND 367
TP E K F L ++ +R+YLE+E + P F F +E IDDWV + F +GND
Sbjct: 298 EIAPTPPEKKPFIFLDVATLREYLEVELNIPQLP----FAFDLERAIDDWVFLIFFVGND 353
Query: 368 FIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQF 426
F+P+LP L I +GA+ L +++++ LP + GY+ G + L R + L+ LAS + E F
Sbjct: 354 FLPHLPSLEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQLILSGLASEEDEIF 412
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 100/164 (60%)
Query: 507 HKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDI 566
++ YY K + R + YI + W L YYY G SW WYYP H++P+ +D
Sbjct: 670 YRERYYKEKFGVDLSDTDFRRSVVKSYIEGLCWVLAYYYQGVPSWQWYYPFHFSPFAADF 729
Query: 567 KDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+D L++++++G PF PF+QL+ VLPA S+ +P + LMT +S I+++YP EF D
Sbjct: 730 EDLESLDIQFQLGSPFKPFEQLMGVLPADSRASIPPAFHPLMTESDSDIIDFYPSEFEID 789
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
+NGKK W+ V L+PFIDE +L+ A+ LL+++E RN G
Sbjct: 790 MNGKKMAWQGVALLPFIDEKRLLDALKERYPLLSEDEVRRNGFG 833
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 280 bits (716), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 177/462 (38%), Positives = 247/462 (53%), Gaps = 101/462 (21%)
Query: 1 MGVPKFFRYIS---------------ERYPCLSEVVREYQIP-----EFDNLYLDMNGII 40
MGVP FR +S E+ P +E+ + +P E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 41 HNCSHPNDN-DPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRG 99
H CSHP D P TE ++ +F Y + + M++P++L F+AIDGVAPRAKMNQQR
Sbjct: 61 HPCSHPEDRPAPE---TEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRS 117
Query: 100 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQR 159
RRFRS++EA + E++ + FI
Sbjct: 118 RRFRSSREAALKEEELQA------------FI---------------------------- 137
Query: 160 GRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
E +Q+ E +K +DSNCITPGTPFM L + LRY++ K+ +D
Sbjct: 138 ----------EEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSD 187
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
W++V ILS PGEGEHKIM++IR + KP+Y+PN H +YGLDADL
Sbjct: 188 P---------CWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADL 238
Query: 280 IMLGLCTHEPYFSLLREEVKFNTKSNK-------GGSQIVTPEETK-------FFLLHLS 325
IMLGL THEP+F +LRE+V F S K G ++ ET F L++S
Sbjct: 239 IMLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVS 298
Query: 326 LMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLL 385
++R+YLE+E L P L FPF +E IDDWV F +GNDF+P+LP L I +GA+ L
Sbjct: 299 ILREYLEVE---LYVPN-LPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERL 354
Query: 386 YKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFR 427
++++ LP + GY+ G +NL R E L+ + + + + F+
Sbjct: 355 TEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFK 396
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 122/186 (65%), Gaps = 1/186 (0%)
Query: 490 SDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCV 549
++E+E T E G ++ YY K + E +R+ + Y+ + W L YYY GC
Sbjct: 575 TEENENTDTVRLYEPG-YRERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCP 633
Query: 550 SWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMT 609
SW+WYYP+HYAP+ +D KD + +++K+E+ +PF P++QLL VLPAASK LPE Q LMT
Sbjct: 634 SWTWYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMT 693
Query: 610 LENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRH 669
ENS I+++YPE F DLNGKK +W+ V L+PFIDE +L+ A+ + LT+EE RN
Sbjct: 694 DENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNED 753
Query: 670 GPMLVY 675
G L++
Sbjct: 754 GSTLLF 759
>sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAT1 PE=3 SV=3
Length = 1010
Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 231/439 (52%), Gaps = 73/439 (16%)
Query: 1 MGVPKFFRYISERYP-CLSEVVRE--------------YQIP----EFDNLYLDMNGIIH 41
MGVP +R++S++ P +S+V+ + Y P E DNLYLDMNGI+H
Sbjct: 1 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIPGSDYSAPNPNGELDNLYLDMNGIVH 60
Query: 42 NCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRR 101
C+HP + +E ++ +F Y E + + +P+K+ MAIDGVAPRAKMNQQR RR
Sbjct: 61 PCTHPEGEEAP--PSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQRARR 118
Query: 102 FRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGR 161
FRSAK+A + E L +E + I L Q G
Sbjct: 119 FRSAKDAAI------EAESTLESELKAKTIEL-----------------------QSSGE 149
Query: 162 RFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKL 221
+ K E + + K+ P ++DSN ITPGTPFM +L LRY+V K+ T+
Sbjct: 150 K---GKSLETILDEFKQGLVNKPG--KWDSNAITPGTPFMEKLAAALRYWVGYKLNTEP- 203
Query: 222 WKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIM 281
W+D+ V++S PGEGEHKIM++IR + P YN N HC+YGLDADLI
Sbjct: 204 --------GWRDLKVVISDATVPGEGEHKIMEFIRSQRGDPTYNANTSHCIYGLDADLIF 255
Query: 282 LGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEP 341
LGL THEP F LLRE+V + NK P F L++ ++R+YL + + P
Sbjct: 256 LGLATHEPKFKLLREDV---FRQNKTAGHQKKP----FIWLNIDILREYLREDL-RFTHP 307
Query: 342 GVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYIN 401
PF +E IDDWV + F +GNDF+P+LP + +G++ +L ++ + YI
Sbjct: 308 QT-KIPFDLERAIDDWVFLCFFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYIT 366
Query: 402 EGGYLNLKRFEKFLTKLAS 420
G++NL + + L A+
Sbjct: 367 CDGHVNLAQAQDLLKNFAT 385
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 128/220 (58%), Gaps = 21/220 (9%)
Query: 453 SKEMDPDLAALIKATDDDYDD---GTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQHKT 509
S E P A A D D + E YA++ +++ S E + N F
Sbjct: 506 SSEATPPTANPSIANDADLSNPNVTVHETTGYADHVQFHKSGYTERYYMNKF-------- 557
Query: 510 DYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDF 569
H K D +V N + R AE Y++ + W L YYY+GC SWSW+YP+HYAP D
Sbjct: 558 ---HAKED--EVDN-LRRQVAEEYMKGVCWVLMYYYHGCQSWSWFYPYHYAPLAGDFDQI 611
Query: 570 SHLNLKYEMGE--PFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDL 627
S N+K E GE PF P++QL++VLPAAS LP ++ LM+ ENSPI++YYPE F DL
Sbjct: 612 S--NMKVEFGESAPFRPYEQLMSVLPAASGHNLPAVFRPLMSEENSPIIDYYPENFQLDL 669
Query: 628 NGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
NGKKQ+W+AVVL+PFI+ L++ + A LT EE+ RN
Sbjct: 670 NGKKQEWKAVVLLPFINADHLLEHVQAKYTELTPEEKDRN 709
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1
Length = 951
Score = 267 bits (682), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 172/469 (36%), Positives = 239/469 (50%), Gaps = 96/469 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP FFR++S +YP + E + E + + + ++ S PN ND F +
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF----DNL 51
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ D+ I+ P E K K E
Sbjct: 52 YLDMNG---IIHPCTHP----------------------------------EDKPAPKNE 74
Query: 121 RLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE---AEVLEQK 175
F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE A V +Q+
Sbjct: 75 DEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQR 134
Query: 176 AKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSL 228
+E KG LP E+ RFDSNCITPGT FM L + LRY++ ++ D
Sbjct: 135 VREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDP-------- 186
Query: 229 WVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHE 288
WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADLIMLGL THE
Sbjct: 187 -GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHE 245
Query: 289 PYFSLLREEVKFNTK-----SNKGGSQIVTPE--------------------ETKFFLLH 323
P F+++REE K N N+ G ++ E E +F L
Sbjct: 246 PNFTIIREEFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLR 305
Query: 324 LSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALP 383
L+++R+YLE E L FPF +E IDDWV M F +GNDF+P+LP L I GA+
Sbjct: 306 LNVLREYLERELTM----ASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAID 361
Query: 384 LLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 362 RLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD 410
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 103/170 (60%), Gaps = 1/170 (0%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ ++ ++E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYT 676
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G +++
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFV 686
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1
Length = 950
Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 170/469 (36%), Positives = 237/469 (50%), Gaps = 96/469 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP FFR++S +YP + E + E + + + ++ S PN ND F +
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF----DNL 51
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ D+ I+ P E K K E
Sbjct: 52 YLDMNG---IIHPCTHP----------------------------------EDKPAPKNE 74
Query: 121 RLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE---AEVLEQK 175
F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE A V +Q+
Sbjct: 75 DEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQR 134
Query: 176 AKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSL 228
+E KG LP E+ RFDSNCITPGT FM L + LRY++ ++ D
Sbjct: 135 VREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDP-------- 186
Query: 229 WVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHE 288
WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADLIMLGL THE
Sbjct: 187 -GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHE 245
Query: 289 PYFSLLREEVKFNTK-----SNKGGSQIVTPE--------------------ETKFFLLH 323
P F+++REE K N N+ G ++ E E +F L
Sbjct: 246 PNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEGEFIFLR 305
Query: 324 LSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALP 383
L+++R+YLE E L F F +E IDDWV M F +GNDF+P+LP L I A+
Sbjct: 306 LNVLREYLERELTM----ASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAID 361
Query: 384 LLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 362 RLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD 410
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDADAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYT 676
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G +++
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFV 686
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1
Length = 950
Score = 261 bits (667), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 170/469 (36%), Positives = 237/469 (50%), Gaps = 96/469 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP FFR++S +YP + E + E + + + ++ S PN ND F +
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF----DNL 51
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ D+ I+ P E K K E
Sbjct: 52 YLDMNG---IIHPCTHP----------------------------------EDKPAPKNE 74
Query: 121 RLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE---AEVLEQK 175
F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE A V +Q+
Sbjct: 75 DEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQR 134
Query: 176 AKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSL 228
+E KG LP E+ RFDSNCITPGT FM L + LRY++ ++ D
Sbjct: 135 VREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDP-------- 186
Query: 229 WVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHE 288
WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADLIMLGL THE
Sbjct: 187 -GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHE 245
Query: 289 PYFSLLREEVKFNTK-----SNKGGSQIVTPE--------------------ETKFFLLH 323
P F+++REE K N N+ G ++ E E +F L
Sbjct: 246 PNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLR 305
Query: 324 LSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALP 383
L+++R+YLE E L F F +E IDDWV M F +GNDF+P+LP L I A+
Sbjct: 306 LNVLREYLERELTM----ASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAID 361
Query: 384 LLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 362 RLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD 410
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYT 676
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G +++
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFV 686
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2
PE=3 SV=2
Length = 975
Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 165/468 (35%), Positives = 231/468 (49%), Gaps = 95/468 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP FFR+++++YP + VV + + D D N + +C+ PN N
Sbjct: 1 MGVPAFFRWLTKKYP--ATVVNANEDRQRDQ---DGNRVPVDCTQPNPN----------- 44
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
FQ+ + + +I P E + K E
Sbjct: 45 FQEFDNLYLDMNGIIHP------------------------------CTHPEDRPAPKNE 74
Query: 121 RLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKE 178
F++I + P++L +MAIDGVAPRAKMNQQR RRFR++KE E +E
Sbjct: 75 DEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEASIEE 134
Query: 179 KGERL-------PTEKR----FDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLS 227
+ RL P +K+ FDSNCITPGTPFM RL LRY++ ++T D
Sbjct: 135 QRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDA------- 187
Query: 228 LWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTH 287
W ++ +ILS PGEGEHKIMDY+R + P ++PN HCL G DADLIMLG+ TH
Sbjct: 188 --SWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIMLGIATH 245
Query: 288 EPYFSLLREEVKFNT--------------KSNKG-------GSQIVTPE--ETKFFLLHL 324
E F+++REE N K +G G PE E F L +
Sbjct: 246 EANFNIIREEFVPNQPRACDLCGQYGHELKECRGAENETDLGDDYCKPEQREKNFIFLRI 305
Query: 325 SLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPL 384
++R+YLE E L P L F F +E +DDWV + F +GNDF+P+LP L I GA+
Sbjct: 306 PVLREYLEKE---LSMPN-LPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDR 361
Query: 385 LYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
L K+Y+E++ + GY+ + G L R E + L + E F+ + D
Sbjct: 362 LIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQD 409
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 100/173 (57%), Gaps = 1/173 (0%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D E A Y+ + W L YYY GC SW WY+P+HYAP+ SD +
Sbjct: 543 KDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFE 602
Query: 568 DFSHLNLKYEM-GEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ +PF P +QL++V PAASK+ LP +Q LM ++SPI++ YP +F D
Sbjct: 603 TVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRID 662
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSN 679
LNGKK W+ V L+PF+DE +L+ + +V LT EE+ RN GP ++ N
Sbjct: 663 LNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIFIGRN 715
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2
PE=3 SV=2
Length = 976
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 230/470 (48%), Gaps = 97/470 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP FFR+++++YP E + +D + +C+ PN N
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDR-----QRGVDGRRVPVDCTQPNPN----------- 44
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
FQ+ + + +I P E + K E
Sbjct: 45 FQEFDNLYLDMNGIIHP------------------------------CTHPEDRPAPKNE 74
Query: 121 RLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE-----AEVLE 173
F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE A + E
Sbjct: 75 DEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKAASIEE 134
Query: 174 QKAK--EKGERLPTEKR------FDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDT 225
Q+ + +G +P +K+ FDSNCITPGTPFM RL LRY++ ++T D
Sbjct: 135 QRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDP----- 189
Query: 226 LSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLC 285
W ++ +ILS PGEGEHKIMDYIR + P ++PN HCL G DADLIMLG+
Sbjct: 190 ----AWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLIMLGIA 245
Query: 286 THEPYFSLLREEVKFNT--------------KSNKG-------GSQIVTPE--ETKFFLL 322
THE F+++REE N K +G G + PE E F L
Sbjct: 246 THEANFNIIREEFVPNQPRACELCGQYGHELKECRGAENDTDLGDEYCKPEQREKNFIFL 305
Query: 323 HLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGAL 382
+ ++R+YLE E L F F++E +DDWV + F +GNDF+P+LP L I GA+
Sbjct: 306 RIPVLREYLEKEMAMPN----LPFQFNLERALDDWVFLCFFVGNDFLPHLPSLEIREGAI 361
Query: 383 PLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
L K+Y+E++ + GY+ + G L R E + L + E F+ + D
Sbjct: 362 DRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQD 411
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
Query: 490 SDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCV 549
+DEDEE + + K YY K D + A Y+ + W L YYY GC
Sbjct: 526 TDEDEEPKDDIRLYESGWKERYYRAKFDVGSDDVDFRHRVAWAYVEGLCWVLRYYYQGCS 585
Query: 550 SWSWYYPHHYAPYISDIKDFSHLNLKYEM-GEPFLPFQQLLAVLPAASKELLPEPYQNLM 608
SW WY+P+HYAP+ SD + + +PF P +QL++V PAASK+ LP +Q LM
Sbjct: 586 SWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLM 645
Query: 609 TLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNR 668
T + SPI++ YP +F DLNGKK W+ V L+PF+DE +L++ + +V LTDEE+ RN
Sbjct: 646 TEDESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKYRNT 705
Query: 669 HGPMLVYTYSN 679
GP ++ N
Sbjct: 706 RGPNRIFIGRN 716
>sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3
Length = 980
Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 234/470 (49%), Gaps = 98/470 (20%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQ 59
MG+P FR++S RYP +S V+ + + + D + I + + PN N F
Sbjct: 1 MGIPAAFRWLSTRYPKIISPVIEDQPL-----VMEDGSTIPVDTTRPNPNGEEF------ 49
Query: 60 IFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKG 119
++ ++G+ + R K++
Sbjct: 50 -------------------DNLYLDMNGIVHPCSHPEDR--------------PAPKDEE 76
Query: 120 ERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKE- 178
E + R+ + P+K+ +A+DGVAPRAKMNQQR RRFRSA+EA+ EQ +E
Sbjct: 77 EMMMEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRFRSAQEAQEKEQDKQEL 136
Query: 179 -------KGERLPTE-------KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKD 224
G L TE K FDSN ITPGTPFM L LRY+ + K+ TD
Sbjct: 137 IKMLKQQNGGNLSTESLETVTKKAFDSNSITPGTPFMDILALSLRYWCQYKLNTDP---- 192
Query: 225 TLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGL 284
W + +I+S PGEGEHKIM+++R ++ PD++PN RH +YGLDADLIMLGL
Sbjct: 193 -----GWAKLKIIISDATVPGEGEHKIMNFVRSQRASPDHDPNTRHVIYGLDADLIMLGL 247
Query: 285 CTHEPYFSLLREEVKFNTK--------SNKG-GSQIVTPEETK----------------F 319
THEP+F +LRE+V F + KG +Q EE K F
Sbjct: 248 ATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKKDGEHDEKDKGVALKPF 307
Query: 320 FLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIIN 379
LH++++R+YL +E G P F F +E +DDW+ M +GNDF+P+LP L I
Sbjct: 308 IWLHVAVLREYLAVELGVPNLP----FRFDLERAVDDWIFMCCFVGNDFLPHLPALEIRE 363
Query: 380 GALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
+ L K++++ LP + GY+ + G+++L+R + L LA + F+ +
Sbjct: 364 HGIDTLTKIWKDNLPVMGGYVTKDGHIDLERAQVILDGLAQQEDNIFKRR 413
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 511 YYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFS 570
YY K E Y+ + W L YY+ GC SW WYYP+HYAP+ +D KD +
Sbjct: 573 YYEKKFHKDPKDIEFRHGVGRAYVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFKDIA 632
Query: 571 HLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGK 630
+N+ +E G PF+QL++VLPAAS+ LPE + +LM S I+++YPE+F DLNGK
Sbjct: 633 KMNISFEKGRVSKPFEQLMSVLPAASRHALPEVFHDLMLNPESNIIDFYPEDFEIDLNGK 692
Query: 631 KQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG-PMLVYTYSNVNL 682
K W+ V L+PFI+ +L+ A+ + L+ + +RN G +L+++ + +L
Sbjct: 693 KFAWQGVALLPFIEMPRLLAAVQSKYPELSAADSARNEMGRDVLIFSEGHESL 745
>sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 /
CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1
PE=3 SV=3
Length = 1039
Score = 241 bits (614), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 160/471 (33%), Positives = 234/471 (49%), Gaps = 99/471 (21%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQ 59
MG+P FR++S +YP +S VV E + D + ++ + PN N F
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVVEEKALVMEDGTVVPVD-----ATQPNPNGEEF------ 49
Query: 60 IFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKG 119
++ ++G+ + R + E E++ + K
Sbjct: 50 -------------------DNLYLDMNGIVHPCSHPEDRPA---PSDEEEMMVEVFKY-- 85
Query: 120 ERLPTEKRFDFITLKFCFPKKLFFMAI-DGVAPRAKMNQQRGRRFRSAKEA--------E 170
TE+ + + P+KL +A+ DGVAPRAKMNQQR RRFR+A++A +
Sbjct: 86 ----TERVVNMVR-----PRKLLMIAVADGVAPRAKMNQQRSRRFRAAQDAKEKEEDKQQ 136
Query: 171 VLEQKAKEKGERLPTE-------KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWK 223
+L+ KEKG E K FDSN ITPGTPFM L LRY+ K+ TD
Sbjct: 137 LLKMLQKEKGSTAKEEPIETVVKKAFDSNSITPGTPFMDILAASLRYWCAYKLNTDP--- 193
Query: 224 DTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLG 283
W + VI+S PGEGEHKIM+++R ++ P+++PN RH +YGLDADLIMLG
Sbjct: 194 ------AWAKMKVIISDATVPGEGEHKIMEFVRSQRNSPEHDPNTRHVIYGLDADLIMLG 247
Query: 284 LCTHEPYFSLLREEVKFNTK--------SNKGGSQIVTPEETK----------------- 318
L THEP+F +LRE+V F KG + E K
Sbjct: 248 LATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKEKAGEFDEKDKAEPLKP 307
Query: 319 FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHII 378
F LH+S++R+YL +E L P L F + +E IDDWV M F +GNDF+P+LP L I
Sbjct: 308 FIWLHVSILREYLAIE---LNIPN-LPFRWDLERAIDDWVFMCFFVGNDFLPHLPALEIR 363
Query: 379 NGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
+ L ++++ LP + GY+ + G+++L R + L+ LA + FR +
Sbjct: 364 ENGIETLMAIWKDNLPVMGGYVTKDGHVDLDRAQYILSGLAKQEDSIFRRR 414
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%)
Query: 450 KEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQHKT 509
KE++ E +AL K + ++GT + A+ E + EE + + +
Sbjct: 519 KEENPEAKTPPSALGKRKAELIEEGTATASDAASDTETPATTSSEEGPIDTVRLWEEGYA 578
Query: 510 DYYH---YKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDI 566
D Y+ +K+D + A Y+ + W L YY+ GC SW W+YP+HYAP+ +D
Sbjct: 579 DRYYEQKFKVDAKDIA--FRHKVARAYVEGLAWVLMYYFQGCPSWEWFYPYHYAPFAADF 636
Query: 567 KDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
D + + +E G PF+QL++VLPAAS+ +PE + +LMT E+SPIL++YPE+F D
Sbjct: 637 VDLGKMKISFEKGRISRPFEQLMSVLPAASRHAIPEVFHDLMTQEDSPILDFYPEDFEID 696
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ + L+PFI+ +L+ AM HLL+ E+++RN G
Sbjct: 697 LNGKKMSWQGIALLPFIEMPRLLDAMKTKSHLLSAEDKARNAPG 740
>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
GN=IIV3-059L PE=3 SV=1
Length = 560
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/547 (25%), Positives = 245/547 (44%), Gaps = 114/547 (20%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P++L + IDGVAP +K QQR RRF + K T+ FDSNCI+PG
Sbjct: 97 PRELV-LCIDGVAPVSKQIQQRQRRFITHK-----------------TDGGFDSNCISPG 138
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T F+ +L L+ ++ K+ +K W + +++ + PGEGEHK+ D++R
Sbjct: 139 TEFLFQLGLYLKTHLESKL--EKEWLNVSTIYFMDSL--------VPGEGEHKLFDFLRT 188
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPY-----FSLLREEVKFNTKSNKGGSQIV 312
+++ + + G DADLIML L + S+LRE++
Sbjct: 189 HQTRI-VDTKFNIVVVGNDADLIMLSLLVSVLFIKENPLSILREDL-------------- 233
Query: 313 TPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNL 372
T ++ + L+ ++L++D + + K P+ E +I D+V+M F+IGNDF+P++
Sbjct: 234 TSKKLDYLLVDINLLKDTIYQNASRDKPRFT---PYDFEFVICDFVVMCFMIGNDFLPSV 290
Query: 373 PDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
P +I +G L +L K Y GY+ + KF + E+ + +
Sbjct: 291 PLFNIYDGGLDMLLKY----------YFTTAGYITCRSVSKFYGRNKGKKMEKIKINFKH 340
Query: 433 IQ----YLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYY 488
+Q Y+ + + + + + L ++K E +L
Sbjct: 341 LQPYLHYIATAVNPQAIEHYRNRNYGYPNVLLDVVLKK---------EAMLT-------- 383
Query: 489 YSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG- 547
E+ T++ + H +++ + Y+ I+W +YY G
Sbjct: 384 -----EDVTTHYLKAYSPH---------------HKITKSLVHSYLEEIKWIFNYYAYGA 423
Query: 548 -CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMG----EPFL--PFQQLLAVLPAASKELL 600
C+ W+ YYP +AP D+ F+ L + G + L PF QLL +LP S +LL
Sbjct: 424 VCIDWNMYYPSQFAPTALDLS-FATLTFTSQSGLKERKKCLTDPFFQLLCILPPHSSDLL 482
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLT 660
P+P L+ +++ +P E D +GK +WEA+ ++P +D K++K + H +
Sbjct: 483 PDPLNKLLV---QKLVDGHPIEIKMDYDGKLNEWEAIPILPPLDYNKILKMYNDHIHQCS 539
Query: 661 DEERSRN 667
E+ RN
Sbjct: 540 KEDLKRN 546
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 27/129 (20%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDN---------LYLDMNGIIHNCSH------ 45
MG+ FFR+ + +P V +Y L LD+NGIIH
Sbjct: 1 MGIKYFFRWYKDSFP---NTVTKYSTKNHKKSQDTDEPFLLLLDLNGIIHTSCQKIYKYG 57
Query: 46 ---PND---NDPHFRITEKQI--FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQ 97
P + P EK + ++D+ I+ L +++P++L + IDGVAP +K QQ
Sbjct: 58 SFEPKNLLKKSPPVYKGEKDVLVYEDVLASIDSLVALVEPRELV-LCIDGVAPVSKQIQQ 116
Query: 98 RGRRFRSAK 106
R RRF + K
Sbjct: 117 RQRRFITHK 125
>sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6
GN=IIV6-012L PE=3 SV=1
Length = 624
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 174/729 (23%), Positives = 276/729 (37%), Gaps = 228/729 (31%)
Query: 1 MGVPKFFRYI----SERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRIT 56
MG+ FF+++ SE C+ R D L +DMNGIIHN +
Sbjct: 1 MGIKYFFKWLKTNHSESIKCID---RHDNSQCIDVLLIDMNGIIHNSA------------ 45
Query: 57 EKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAK 116
Q+++ Y F PK + A
Sbjct: 46 -----QEVYGYGSFSF----PK----------------------------------ENAC 62
Query: 117 EKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKA 176
+K ++ D + ++F PK+L + IDGVAPR+K QQR RRF +A + + +
Sbjct: 63 DKKVYSLVCRQIDRMVIQFK-PKELI-LCIDGVAPRSKQIQQRQRRFLAAHDRKKPGTEF 120
Query: 177 KEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKI--------TTD---KLWKDT 225
+ T K FDSN I+PGT FM L + + +K K TTD W++
Sbjct: 121 NFDCNKGNTSK-FDSNSISPGTEFMHNLGRYIDIHIKKKQKPAFTGRETTDAPQNNWRNK 179
Query: 226 LSLWV--------WKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDA 277
W W ++ V+ + + GEGEHK++DYIR N +C+YG DA
Sbjct: 180 DQSWRQKVDDTAEWSNLTVVFANDKVSGEGEHKLLDYIRKYG-----NSYYTYCIYGSDA 234
Query: 278 DLIMLGLC----THEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFFLLHL-----SLMR 328
DLIML + T +LR+E K +P + L+++ +L++
Sbjct: 235 DLIMLSMSALTTTAIKNIYVLRDEYK-------------SPN---YLLINIPNFVKNLIK 278
Query: 329 DYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKV 388
D KL E + I+D++ M F++GNDF+P++P + I+ + +
Sbjct: 279 DVKSNWTDKLDE----------KRFINDFIFMCFMVGNDFLPHIPSIEIMTNGIESMLAF 328
Query: 389 YQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVF 448
Y + YI + L F++E D++ LE +
Sbjct: 329 YTKN----KNYITDNNGLG-----------EIFNYESLLPILKDLEGLEQSL-------- 365
Query: 449 HKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQHK 508
E+V N EY+ D E +EFGQ K
Sbjct: 366 -------------------------CNEKV----NNSEYFRDDLLESSSFLVTNEFGQQK 396
Query: 509 -TDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDI- 566
+ Y+ Y K E + + Y+ +QW L YY W W Y + YAP ++ I
Sbjct: 397 CVNINEYREKYMKKHFESSSEASLMYLEGMQWVLSYYTLKVPDWEWSYKYDYAPNLTSII 456
Query: 567 -----KDFSHLNLKYEMGEPFLP---------------FQQLLAVL-------------- 592
K + K + P FQ+ +++
Sbjct: 457 EAMSFKQIGGTSKKEKNQYKLFPVNSVNSTEVATSSSGFQKSFSMVFQNSLQNTKDWRDK 516
Query: 593 -PAASKELLPEPYQNLMTL--ENSPILEY-------------YPEEFATDLNGKKQDWEA 636
S + +P +Q L L ++S +L Y P+E D GK+Q+WE
Sbjct: 517 KTKTSSDAIPPFHQLLFILPPDSSDLLPYPLCEALTNELKIYAPKELIIDRAGKRQEWEG 576
Query: 637 VVLIPFIDE 645
+VL+P +D+
Sbjct: 577 IVLLPKLDQ 585
>sp|Q5UQ94|YR528_MIMIV Putative 5'-3' exonuclease R528 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R528 PE=1 SV=1
Length = 621
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 28/190 (14%)
Query: 192 NCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKI 251
N ITPGT FM +L L+ +D++ +L +D+ +I++ GEGE KI
Sbjct: 37 NKITPGTAFMNKLVNYLK--------SDQI--QSLLNTNRQDMNIIITDMYEVGEGEKKI 86
Query: 252 MDYI-RYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQ 310
++Y+ +Y+ + D +Y DAD+I+L + +LR N +++K +
Sbjct: 87 VNYVHKYLHNTSD-----TVMVYSPDADVILLCMLMPVSNLYMLRH----NQETSKKFKR 137
Query: 311 IVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP 370
+ + L+++ ++++ + + P F ++NI D V + L GNDF+P
Sbjct: 138 NI------YDLINIKMLKN--NISYYINNNPDFSRENFIVDNINYDLVCISTLFGNDFVP 189
Query: 371 NLPDLHIING 380
+ +++ G
Sbjct: 190 KIETINVKKG 199
>sp|Q14693|LPIN1_HUMAN Phosphatidate phosphatase LPIN1 OS=Homo sapiens GN=LPIN1 PE=1 SV=2
Length = 890
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 1461 NIPSISDLIKQNNITAKTDYPTTSTFP--EVKYTNSPSDNGGRTATP--DTSFTTKLTNL 1516
+IP D I + N++ YP ++++P + +++ +PS +G R +TP D+ +K T
Sbjct: 204 DIPPFQDDIPEENLSLAVIYPQSASYPNSDREWSPTPSPSGSRPSTPKSDSELVSKST-- 261
Query: 1517 FNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPSGGELS-FEEKHSMAAKSKNE 1575
R+ + E + A SPH ++++ L++ + S F+ HS ++ + ++
Sbjct: 262 -ERTGQKNPEMLWLWGELPQAAKSSSPHKMKESSPLSSRKICDKSHFQAIHSESSDTFSD 320
Query: 1576 TTPTI 1580
+PT+
Sbjct: 321 QSPTL 325
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 737,849,675
Number of Sequences: 539616
Number of extensions: 33479556
Number of successful extensions: 127561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 716
Number of HSP's that attempted gapping in prelim test: 116334
Number of HSP's gapped (non-prelim): 7912
length of query: 1891
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1759
effective length of database: 120,340,147
effective search space: 211678318573
effective search space used: 211678318573
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)