Query psy14280
Match_columns 1891
No_of_seqs 267 out of 606
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 15:51:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y35_A LD22664P; hydrolase-DNA 100.0 5E-283 2E-287 2695.0 84.8 1117 1-1224 1-1140(1140)
2 3pie_A 5'->3' exoribonuclease 100.0 2E-281 5E-286 2646.3 90.4 1060 1-1230 1-1142(1155)
3 3fqd_A Protein DHP1, 5'-3' exo 100.0 9E-181 3E-185 1677.9 51.2 614 1-683 4-770 (899)
4 1b43_A Protein (FEN-1); nuclea 98.2 1E-06 3.5E-11 104.0 6.6 98 234-377 144-247 (340)
5 1a76_A Flap endonuclease-1 pro 98.1 3.6E-06 1.2E-10 98.9 7.8 90 234-376 144-234 (326)
6 3fqd_A Protein DHP1, 5'-3' exo 98.0 1.2E-06 4.3E-11 112.2 2.7 41 134-174 94-134 (899)
7 3qe9_Y Exonuclease 1; exonucle 98.0 2.4E-05 8.4E-10 93.1 12.9 91 1-105 1-97 (352)
8 1rxw_A Flap structure-specific 97.9 5.2E-05 1.8E-09 89.5 13.6 104 234-378 143-246 (336)
9 1ul1_X Flap endonuclease-1; pr 97.3 0.0009 3.1E-08 80.4 12.6 93 234-376 149-241 (379)
10 3ory_A Flap endonuclease 1; hy 97.2 0.002 6.8E-08 77.2 14.0 109 234-390 158-272 (363)
11 3pie_A 5'->3' exoribonuclease 97.2 0.0001 3.6E-09 97.4 2.7 32 135-166 74-105 (1155)
12 2y35_A LD22664P; hydrolase-DNA 97.1 0.00014 4.9E-09 96.9 3.3 35 135-169 74-108 (1140)
13 3q8k_A Flap endonuclease 1; he 96.7 0.0056 1.9E-07 72.7 11.3 93 234-376 149-241 (341)
14 2izo_A FEN1, flap structure-sp 96.6 0.0099 3.4E-07 70.6 12.8 103 234-377 141-244 (346)
15 1exn_A 5'-exonuclease, 5'-nucl 91.5 2.6 8.7E-05 49.3 15.5 87 242-376 122-212 (290)
16 1whk_A 1700024K14RIK, riken cD 65.0 12 0.00041 37.0 6.7 64 1150-1222 9-82 (91)
17 1txq_A Dynactin 1; protein com 50.2 37 0.0013 33.6 7.3 67 1151-1226 10-86 (93)
18 1whm_A Cylindromatosis tumor s 48.3 36 0.0012 33.8 6.8 71 1151-1226 7-88 (92)
19 2cp3_A CLIP-115, KIAA0291; mic 46.7 54 0.0019 31.9 7.7 66 1151-1226 5-80 (84)
20 1whl_A Cylindromatosis tumor s 46.0 64 0.0022 32.0 8.3 74 1151-1226 5-91 (95)
21 2coy_A Dynactin-1; microtubule 45.7 42 0.0014 34.4 7.1 64 1151-1223 31-104 (112)
22 2e3h_A Restin; CAP-Gly, cytopl 44.5 55 0.0019 32.3 7.5 65 1153-1227 1-75 (90)
23 3rdv_A CAP-Gly domain-containi 39.9 48 0.0017 31.4 6.1 59 1153-1220 2-69 (72)
24 2e3i_A Restin; CAP-Gly, cytopl 37.8 68 0.0023 31.4 6.9 61 1153-1223 2-72 (86)
25 1ixd_A Cylindromatosis tumour- 37.7 1.4E+02 0.0049 30.1 9.4 65 1150-1222 14-89 (104)
26 1whh_A Clipr-59; microtubule b 36.8 1.3E+02 0.0045 30.4 8.9 64 1151-1224 23-96 (102)
27 4b6m_A Tubulin-specific chaper 35.6 77 0.0026 31.0 6.8 64 1152-1222 4-76 (84)
28 1whg_A Tubulin specific chaper 34.8 78 0.0027 32.4 7.1 64 1153-1222 32-105 (113)
29 1lpl_A Hypothetical 25.4 kDa p 34.3 85 0.0029 31.2 7.1 67 1153-1225 11-87 (95)
30 2cp6_A Restin; microtubule bin 33.6 89 0.003 34.2 7.7 67 1151-1227 36-112 (172)
31 2cow_A Kinesin-like protein KI 32.7 1.2E+02 0.0041 30.5 7.9 64 1151-1224 21-94 (100)
32 1whj_A 1700024K14RIK, riken cD 31.9 1.1E+02 0.0038 30.8 7.5 63 1153-1225 24-96 (102)
33 2qqr_A JMJC domain-containing 29.0 51 0.0017 34.1 4.6 37 1152-1196 4-40 (118)
34 2coz_A CAP350, centrosome-asso 28.1 84 0.0029 32.7 6.1 64 1150-1223 28-101 (122)
35 2z0w_A CAP-Gly domain-containi 27.6 59 0.002 32.5 4.7 66 1151-1226 8-83 (96)
36 2cp0_A Clipr-59 protein, clipr 26.4 2.1E+02 0.007 28.6 8.3 62 1153-1224 16-87 (95)
37 1whn_A Hypothetical protein ri 26.0 1.7E+02 0.0057 30.5 7.9 66 1755-1823 27-93 (128)
38 2cp2_A CLIP-115, KIAA0291; mic 25.4 1E+02 0.0034 30.8 5.9 61 1151-1221 16-86 (95)
39 2cp5_A Restin; microtubule bin 24.8 1.1E+02 0.0039 32.4 6.5 61 1151-1221 62-132 (141)
40 3adg_A F21M12.9 protein; HYL1, 23.4 1.2E+02 0.0041 28.0 5.7 65 1756-1823 5-72 (73)
41 1nz9_A Transcription antitermi 23.1 85 0.0029 27.9 4.5 37 910-947 4-40 (58)
No 1
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-283 Score=2695.05 Aligned_cols=1117 Identities=45% Similarity=0.814 Sum_probs=927.8
Q ss_pred CChhHHHHHHHhhcCCchhhhcccCCCCCCEEEEecCCcccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccceE
Q psy14280 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKL 80 (1891)
Q Consensus 1 MGVP~FfrWL~erYP~i~~~v~e~~ipefDnLYLDMNGIIH~Csh~~~~d~~~~~seeeif~~If~yID~L~~iVrPrKl 80 (1891)
||||+|||||++||||+++.+.+..+|+|||||||||||||+|+|+++.+++++.+|++||++||+|||+||++|||||+
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~~~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkl 80 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRL 80 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETTTSCCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSE
T ss_pred CChhHHHHHHHHHCCchhhhccccCCCcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheecccee
Confidence 99999999999999999888888889999999999999999999999877778889999999999999999999999999
Q ss_pred EEEeecCCCcchhhhHHHhhhhhhhhHHHHHHHHHhhhCCCCCcccccccccccccCcccceeeeccCCCchhhhhhhhh
Q psy14280 81 FFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160 (1891)
Q Consensus 81 lyiAIDGVAPRAKMnQQRsRRFrsa~ea~~~~~~~k~~g~~l~~e~~fd~~~l~~~~p~k~~~~aiDGvaP~aKmnqQr~ 160 (1891)
||||||||||||||||||+||||+|++++..+
T Consensus 81 l~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~------------------------------------------------ 112 (1140)
T 2y35_A 81 FFLSVDGVAPRAKMNQQRSRRFRTAREAEQQE------------------------------------------------ 112 (1140)
T ss_dssp EEEECCCSCCHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred EEEEecCCCchhHHHHHHHHHhhhhhhhhhhH------------------------------------------------
Confidence 99999999999999999999999997654322
Q ss_pred ccccchHHHHHHHHHHHHhCCCCCCcccCCCCcccCCchHHHHHHHHHHHHHHHhhcCCcccccccccccccceEEEEcC
Q psy14280 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG 240 (1891)
Q Consensus 161 rrf~s~keae~~~~ka~~~G~~lp~e~~FDSN~ITPGTeFM~kL~~~Lk~fI~~KistDp~W~~~~~~~~~~~lkVIlSg 240 (1891)
+++...|+.. +...||||||||||+||.+|+++|++||++|+++|+.|++ ++|||||
T Consensus 113 -------------~~~~~~g~~~-~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~---------~~Vi~S~ 169 (1140)
T 2y35_A 113 -------------AKAAQRGELR-EHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQR---------CTVILSG 169 (1140)
T ss_dssp -------------HHHHHC--------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSS---------SEEEEEC
T ss_pred -------------HHHhhcCCcc-ccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCccccc---------eEEEEeC
Confidence 1223334332 3468999999999999999999999999999999999999 9999999
Q ss_pred CCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccCCCCcceE
Q psy14280 241 HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFF 320 (1891)
Q Consensus 241 s~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~~~~~~F~ 320 (1891)
++||||||||||+|||.++++|+||||+||||||+|||||||||+||+|||+||||+++|++..++. ..+++.|+
T Consensus 170 ~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~-----~~~~~~f~ 244 (1140)
T 2y35_A 170 QEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRT-----SVEETRFF 244 (1140)
T ss_dssp SSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCC-----CGGGCEEE
T ss_pred CCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccc-----cccccceE
Confidence 9999999999999999999999999999999999999999999999999999999999998765432 23557899
Q ss_pred EEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCccccCCcHHHHHHHHHHHcccCCCcc
Q psy14280 321 LLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYI 400 (1891)
Q Consensus 321 llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~I~eGald~L~~~Yk~~Lp~l~gYL 400 (1891)
++||++|||||.+||..+.. ..+++|+|||||||||||||+|||||||||+|+|++||++.||++|++.+|.++|||
T Consensus 245 ~l~i~~lReyL~~ef~~~~~---~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~~gai~~L~~~Y~~~~~~~~gyl 321 (1140)
T 2y35_A 245 LLHLGLLREYLELEFDALRT---DEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNI 321 (1140)
T ss_dssp EEEHHHHHHHHHHHGGGGCC---SSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTTTTHHHHHHHHHHHHGGGSSSCS
T ss_pred EEEehHHHHHHHHHhhhhcc---ccccccHHHHHHHHHHHHHHhCCccCCCCCccccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999987653 368999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeecHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhCCCcchhhhhhccccCCccHHHHHhhcCCCCCCChhhhhc
Q psy14280 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLN 480 (1891)
Q Consensus 401 te~G~INl~rL~~fL~~Ls~~E~~~F~~~~~d~~~~e~k~~~k~~e~~k~~~~k~~~~~l~~l~k~~~~~~~d~~~~~~~ 480 (1891)
|++|+||++||+.||..|+++|.+.|+++..|.+|++.|..+.-.........+....++.++++......+++++
T Consensus 322 ~~~g~in~~~l~~~l~~l~~~E~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 397 (1140)
T 2y35_A 322 NENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSE---- 397 (1140)
T ss_dssp EETTEECHHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------
T ss_pred cCCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccchhhccccccchhHHHHHHHhhhhccccccc----
Confidence 9999999999999999999999999999888888776553211000000000001112222233222111111100
Q ss_pred ccccccccCCCcchhhhccccccccchHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhhhhhcccccccCcCCCCCccccC
Q psy14280 481 YANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYA 560 (1891)
Q Consensus 481 ~~~~~~i~~~~d~ee~~~~~~~~~~~~K~~YY~~Kf~~~~~~~e~l~~i~~~YveGLqWVL~YYy~GcpSW~WyYPYHYA 560 (1891)
++.+++.+.+..++.+||++||++||+.+. ++++++++|++|||||||||+|||+|||||+||||||||
T Consensus 398 ----------~~~~~e~~~~~~~~~~~k~~YY~~Kf~~~~-~~~~~~~~~~~YveGl~Wvl~YYy~G~~SW~WyYpyhYA 466 (1140)
T 2y35_A 398 ----------EDCSDENAVLLKEFQNYKRNFYRNKFKRDP-NDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYT 466 (1140)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHHHHHHHHHHTSCSCSSCCCCCSSC
T ss_pred ----------cccchhhhhhhhhhhHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCcC
Confidence 011111223344578999999999999875 567899999999999999999999999999999999999
Q ss_pred CCccccccccccccccccCCCCChHhHhhhccCCcccCCCCHhhHhhhcCCCCcccccCCCcceecCCCCccceeeEEec
Q psy14280 561 PYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLI 640 (1891)
Q Consensus 561 P~iSDl~~~~~~~i~Fe~g~Pf~PfeQLmaVLPp~Sk~LLP~~yr~LMtdp~SPI~dFYP~~FeiDlNGKk~~WegVVLL 640 (1891)
||+|||.++.+++++|++|+||+||||||||||++|+++||++||+||++|+|||+||||++|++|+|||+++|||||||
T Consensus 467 P~~sDl~~~~~~~i~F~~g~Pf~PfeQLm~VLP~~S~~~LP~~~~~Lm~~~~Spi~dfYP~~f~iD~nGk~~~we~Vvll 546 (1140)
T 2y35_A 467 PFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLI 546 (1140)
T ss_dssp CCGGGCCCCTTCCCCCCCCCCCCHHHHHHHHCCGGGGGGSCGGGHHHHHCTTCTTGGGSCSSCCCCCSSCCSGGGSCCCC
T ss_pred chHHHHHhhccccccccCCCCCChHHHHHhhcChhhhhhCCHHHHHhhcCCCCchhHhCccceeecCCCCcCcEEeEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHhhcCCCCHHHHhhccCCCcEEEEecCCCCccccCCCCCCCcccccceeecccCCccc--cCCccccc
Q psy14280 641 PFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLYRDDIY--VHPNKLRK 718 (1891)
Q Consensus 641 PFIDe~rLl~Am~~~~~~LT~EEk~RN~~G~~llF~yd~~~~~~~~Sp~~Fpdi~~~~~~~~~~~~~~~~--~p~~~l~~ 718 (1891)
||||++||++||+++++.||+||++||++|.+++|.|++...+.+++...|.++.+|+|.+......++. +|.. ...
T Consensus 547 PFIde~~Ll~a~~~~~~~Lt~eE~~RN~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~ 625 (1140)
T 2y35_A 547 PFIDEGRLLAAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQGPMPAYPPLRALPVLYCTEVAKWSHEIAVNLPYS-VCI 625 (1140)
T ss_dssp CCCCHHHHHHTTHHHHHHSCHHHHHTTSCCCEEEEEECSSCCCCBCCBTTBCCBSCCCEEEEEECGGGSCCCCSSC-SCS
T ss_pred CcCCHHHHHHHHHhccccCCHHHHhhcccCCceEEEeccccCcccCCCCCccccccccccchhhccccccccCCch-hhc
Confidence 9999999999999999999999999999999999999998876555433355899999987643322222 2222 112
Q ss_pred cCCccccccccccCCCccccccceeeeecceeEEecCCCCCCcEEEEeccCCC-ccHHHHHHHHcCCEEEecCCccceEE
Q psy14280 719 GLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQV-PSLKQVADQILGKTIFINYPHLIEIR 797 (1891)
Q Consensus 719 gL~~gv~~~~~~~GFPTL~~Lp~t~~L~~~gV~VFq~pSR~eSMiL~I~~~~~-~sl~eiAk~LLGK~VyVgWP~L~EAK 797 (1891)
+++.| ....+++|||||+||||+++|+.++|+|||++|||+||+|++.+... .++.++|+++|||+||||||||+|||
T Consensus 626 ~~~~~-~~~~~~~GFPtl~~l~~~~~l~~~~V~vF~~~Sr~~smvl~~~~~~~~~~~~~~a~~~LGk~v~v~wP~L~EAk 704 (1140)
T 2y35_A 626 ELPNA-ARTVFFPGFPTMQHLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHLVKAI 704 (1140)
T ss_dssp CCTTS-CSSSBBTTBCCSTTSCEEEEEECCCCCSSSSCCSSCEEEEEECCCSSCSSHHHHHHHHTTCEEEESSSSCEEEE
T ss_pred cCCCc-ccccCCCCCCccccccceeEEeccceEEeCCCCCCCeEEEeeccccccCCHHHHHHHHcCCeEEecCCceEEEE
Confidence 34444 33557899999999999999999999999999999999999998754 47899999999999999999999999
Q ss_pred EEEEecCCeeEEEecCCCCcccccchhHHHHHHHHHHHHHHHHhcccceeecCeeEEEEEEeecceeEEecCCCceeEEe
Q psy14280 798 VQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQR 877 (1891)
Q Consensus 798 VVsVSD~~~ky~l~~~~g~~~~~~~~~e~~~w~k~~~~I~e~Y~KR~GI~IGev~VLVhVrpL~Glkyv~~~~Gav~lvK 877 (1891)
||+|||+++++... | +..++.+.|.+++++|+++|++|+||++|++++||||+||+|++|+++.+|++..++
T Consensus 705 Vv~Vsd~~~~~~~~---g-----~~~~~~~~~~~~~~~i~~~y~kr~GI~ig~v~vLv~V~~l~G~~~~~~~~G~~~~~~ 776 (1140)
T 2y35_A 705 VVRVATRDQRVDSE---G-----ITLNDSRRFDSECKALQEHFINRMGIQFANYDVLVYVRTFAGNSTEFRDKGALMVRD 776 (1140)
T ss_dssp EEEEEESSEEEETT---E-----EEECCHHHHHHHHHHHHHHHHHHHCBCCSCCSEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred EEEEEcCccccccC---C-----CChHHHHHHHHHHHHHHHHHhhccceeecceEEEEEEEEecceeeeecCCCcEEeec
Confidence 99999999876421 2 233457789999999999999999999999999999999999999999999976667
Q ss_pred eccccccceecchhccccccccccC-ccCCcccccCCCCEEEEeCCCCCCCcEEEeccc-cccCcEEEEEEEecCCCChh
Q psy14280 878 TFIRSTVTYAYQSAVLNLQQARESL-EYKTIDEIFYPGCQCFALSNPHYGSGGCVISTV-KEENSFIKLSFKVQQEPDLS 955 (1891)
Q Consensus 878 ~fS~~e~~YPlQlIV~DV~~~D~Rf-~~~pIeEeFPiGSkVffLG~~~YGs~G~Vvg~~-~~~~~rlkVsv~v~~EP~~~ 955 (1891)
+|++.+++||+|+||+||.+.|+.. ++.+|+|+||+||+|||||+++|||+|+|+++. ..++++|+|.+.+.+||+++
T Consensus 777 ~~s~~~~~yp~Q~vV~~v~~~d~~~~~~~~iee~FP~gs~vf~LG~~~YG~~g~V~~~~~~~~~~~l~v~~~v~~eP~~~ 856 (1140)
T 2y35_A 777 SWSSSVTGYPAQGVVADLTVWERMRKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVRPEPKVN 856 (1140)
T ss_dssp CCCSSCEEEEGGGCEESCCBCCC--CCCCSHHHHSCTTCEEEECSGGGTTCEEEEEEEC------CEEEEECCCCCCCCH
T ss_pred ccCCcccccchhhccccccccchhhccCcChHhhCCCCCEEEEECCCCCCCceEEccccccCcCCeEEEEEeccCCCCch
Confidence 9999999999999999999988755 789999999999999999999999999999864 23467899999999999999
Q ss_pred hhhhhcccccccccChHHHHHHcCCCHhhHhhhcceEEEecCCcc----CcceeeeeeeeeeccCCceecCceeccCCCC
Q psy14280 956 DLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE----GAKRHNIGLNIKFSRKNEEVVGFTRRDETTK 1031 (1891)
Q Consensus 956 ~~~~~~~~~~~~Y~Ps~~VAk~LGIspl~LSRITGS~~V~~gsr~----~~~KiNIGLNLKF~~RnqkVlGYTRk~~~~~ 1031 (1891)
..++.+++...+|+|+|+||++|||||++||||||||+|..++++ +++|+||||||||++|+++|+||||| .++
T Consensus 857 ~~~~~~~~~~~~Y~ps~~vAr~Lgis~~~LsrITgs~~V~~~~~~~~~e~~~k~NIGLnLKf~~k~~kVlGYtRr--~~~ 934 (1140)
T 2y35_A 857 AARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPRRQKMENVTKHNIGLQLKYPRQNEERAGYCFR--TNN 934 (1140)
T ss_dssp HHHHHHHHHHHCCEEHHHHHHHTTCCHHHHHHHHSCCBCC-------------CBCSCCCEETTTTEEETTTEEE--SSS
T ss_pred HHHHHHHhhccCCccHHHHHHHcCCCHHHHHHhhceEEEEeCCcccccccccceecceeeeeccccCccCCcccC--CCC
Confidence 988888888899999999999999999999999999999875432 45899999999999999999999999 889
Q ss_pred ceEecHHHHHHHHHHHHhChHHHHHhhcC-CCCCccccCCCCCc-chHHHHHHHHHHHhhCCCCccccccCCccccCHHH
Q psy14280 1032 KWFYTEQVVTLIKNYMKQFPEVFGFLKDH-SSDDIYLRDDVFPH-QGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKV 1109 (1891)
Q Consensus 1032 ~WEYS~kAV~LI~eY~~kFPeLF~~L~~~-~~~d~~~~~DIFp~-~~~~kLkEIkaWLKe~~~~~le~Vscgse~Ldke~ 1109 (1891)
+||||++||+||++|+++||+||++|++. +.+++++++||||+ .++++|++|++|||+++++++++|||++++|++++
T Consensus 935 ~WeyS~~Ai~LI~eY~~kFP~lf~~L~~~~~~~d~~~~~Difp~~~~~~~l~ei~~WLK~~~~~~~e~Vs~~s~~L~~~~ 1014 (1140)
T 2y35_A 935 QWYYSSLAVDLMRNYCQRYPDVIDFFGDSNDRAEFVFEQDVFPNAVGHRRVEELANWVRQQPHMKVERISCGSKTVCRET 1014 (1140)
T ss_dssp CEEECHHHHHHHHHHHHHCHHHHHHHHHCC----------------CTTHHHHHHHHHHHSGGGTSCEEETTCBCCCHHH
T ss_pred ceeEcHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHhhcCCcchHHHHHHHHHHHHhCCcCCceeecccceecCHHH
Confidence 99999999999999999999999999884 55678999999997 67889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc-ccEeeecCCCccccccCCCCCcCCCCCCCcccCCeEEEEeCCCCccccCceEEEEEecCCC---
Q psy14280 1110 VSLIEHAVDTCEKVE-KQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGET--- 1185 (1891)
Q Consensus 1110 IkaIE~~idk~~k~~-K~v~l~Vkp~~L~kP~~~~~~L~PD~~q~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~~--- 1185 (1891)
|++||++++++.+.+ +.++++|+|++|++|..+...+.+ .+|+|+|||||||||++|+||||+|||||||++.++
T Consensus 1015 V~~IE~~~d~~~~~~~~~~~l~v~P~aL~kP~~~~~d~~r-~~q~F~LgDRVV~V~dsg~VP~g~rGTVVGI~~~~~~~~ 1093 (1140)
T 2y35_A 1015 IELLIAAVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVYR-SKRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNP 1093 (1140)
T ss_dssp HHHHHHHHHHHC----CCEEEEECGGGEECTTTSCTTTTS-CSSCCCTTCEEEECSCBTTBCTTCEEEECCBEEEECSSC
T ss_pred HHHHHHHHHHHhhCCCccceeccCHHHeeChhhccccccC-CCCcccCcCeEEEEccCCCCcccceeEEEEEecCCCCcc
Confidence 999999999988544 778889999999999987554433 379999999999999999999999999999998763
Q ss_pred -------CccceEEEEeecccCCCCccc-cCCCccccccCcceeecC
Q psy14280 1186 -------SYDAMYDVVFDKPFPHGVKIR-CSESRGYRMPAQAMINLS 1224 (1891)
Q Consensus 1186 -------~~d~~vDVLFDepF~GGttL~-cs~~RG~~Vp~ssLLNLT 1224 (1891)
..++++|||||+||+||++|+ |++.|||+||.++||||+
T Consensus 1094 ~r~e~~~~~~~~~dVlFD~~F~gG~~i~G~~~~r~yr~p~~~l~ni~ 1140 (1140)
T 2y35_A 1094 VRLECVHAVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALVIIK 1140 (1140)
T ss_dssp SSTTTTTCEEEEEEEEESSCC------------CEEEEEGGGEEECC
T ss_pred cccccccccCceeEEEecCCcCCCcccCCccccceeeccccceEecC
Confidence 237889999999999999998 777999999999999995
No 2
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=100.00 E-value=1.5e-281 Score=2646.34 Aligned_cols=1060 Identities=35% Similarity=0.620 Sum_probs=942.6
Q ss_pred CChhHHHHHHHhhcCCchhhhcccCCCCCCEEEEecCCcccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccceE
Q psy14280 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKL 80 (1891)
Q Consensus 1 MGVP~FfrWL~erYP~i~~~v~e~~ipefDnLYLDMNGIIH~Csh~~~~d~~~~~seeeif~~If~yID~L~~iVrPrKl 80 (1891)
||||+|||||++|||++++.+.+..+|+|||||||||||||+|+|+++.+.+.++||++||.+||+|||+||++|||||+
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~~~~~~pe~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~~vrPrkl 80 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQT 80 (1155)
T ss_pred CChHHHHHHHHHhCcchhhcccCCCCCcCCeEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHHhcCcceE
Confidence 99999999999999999999999999999999999999999999999876667899999999999999999999999999
Q ss_pred EEEeecCCCcchhhhHHHhhhhhhhhHHHHHHHHHhhhCCCCCcccccccccccccCcccceeeeccCCCchhhhhhhhh
Q psy14280 81 FFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160 (1891)
Q Consensus 81 lyiAIDGVAPRAKMnQQRsRRFrsa~ea~~~~~~~k~~g~~l~~e~~fd~~~l~~~~p~k~~~~aiDGvaP~aKmnqQr~ 160 (1891)
||||||||||||||||||+||||+|+++.
T Consensus 81 lyiAiDGVAPrAKmnqQR~RRfrsa~~~~--------------------------------------------------- 109 (1155)
T 3pie_A 81 FYMAIDGVAPRAKMNQQRARRFRTAMDAE--------------------------------------------------- 109 (1155)
T ss_pred EEEEecCCCChhHHHHHHHHHHHhhhhhh---------------------------------------------------
Confidence 99999999999999999999999996532
Q ss_pred ccccchHHHHHHHHHHHHhCCCCCCcccCCCCcccCCchHHHHHHHHHHHHHHHhhcCCcccccccccccccceEEEEcC
Q psy14280 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG 240 (1891)
Q Consensus 161 rrf~s~keae~~~~ka~~~G~~lp~e~~FDSN~ITPGTeFM~kL~~~Lk~fI~~KistDp~W~~~~~~~~~~~lkVIlSg 240 (1891)
...++++++|+.+|++..||||||||||+||.+|+.+|+|||++|+++|+.|++ ++|||||
T Consensus 110 ----------~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~d~~w~~---------~~vi~S~ 170 (1155)
T 3pie_A 110 ----------KALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQN---------VKVIFSG 170 (1155)
T ss_pred ----------HHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHHHHhhCCcCccc---------cEEEEeC
Confidence 223456678888998999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccCCCCcceE
Q psy14280 241 HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFF 320 (1891)
Q Consensus 241 s~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~~~~~~F~ 320 (1891)
++||||||||||+|||+++++|+||||+||||||+|||||||||+||+|||+||||+|.|+++++++ ...+.+.|+
T Consensus 171 ~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~----~~~~~~~f~ 246 (1155)
T 3pie_A 171 HEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSV----KTLETQNFF 246 (1155)
T ss_pred CCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCcccccc----cccccCCeE
Confidence 9999999999999999999999999999999999999999999999999999999999998765443 234567899
Q ss_pred EEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCccccCCcHHHHHHHHHHHcccCCCcc
Q psy14280 321 LLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYI 400 (1891)
Q Consensus 321 llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~I~eGald~L~~~Yk~~Lp~l~gYL 400 (1891)
+|||++|||||.+||..++. .++|+||+|||||||||||||+|||||||||+|+|++|||+.|+++|+++||+++|||
T Consensus 247 ~l~i~~LREyL~~ef~~~~~--~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~~g~i~~L~~~Yk~~l~~~~gYl 324 (1155)
T 3pie_A 247 LLHLSILREYLALEFEEITD--SVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYI 324 (1155)
T ss_pred EEEHHHHHHHHHHHHHhhcc--ccCCCccHhHhhcceeeehhhhCcccCCCCCccCcCCChHHHHHHHHHHHHHhcCCee
Confidence 99999999999999987765 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeecHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhCCCcchhhhhhc---cc----cCCccHHH----HHhh-c-
Q psy14280 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEK---SK----EMDPDLAA----LIKA-T- 467 (1891)
Q Consensus 401 te~G~INl~rL~~fL~~Ls~~E~~~F~~~~~d~~~~e~k~~~k~~e~~k~~~---~k----~~~~~l~~----l~k~-~- 467 (1891)
|++|+|||+||+.||..||++|.++|+++..|.+||++|....-.+..++.+ ++ .+...+.. +.+. .
T Consensus 325 t~~G~inl~rl~~~l~~L~~~E~~~F~~~~~d~~~~~~k~~~~~~~~~~~r~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 404 (1155)
T 3pie_A 325 NEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQR 404 (1155)
T ss_pred ccCCEEcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhHHHhhhhcccccchhHHhhhhccchhhhccccc
Confidence 9999999999999999999999999999999999998764321100000000 00 00000000 0000 0
Q ss_pred -------------CCCCCCC-h----hhh-----------------hccc---ccccccCCCcc---------hhhhccc
Q psy14280 468 -------------DDDYDDG-T----EEV-----------------LNYA---NYEEYYYSDED---------EEWRTNF 500 (1891)
Q Consensus 468 -------------~~~~~d~-~----~~~-----------------~~~~---~~~~i~~~~d~---------ee~~~~~ 500 (1891)
....+++ . +.. ..+. ..+.+...+++ +++.+++
T Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~ 484 (1155)
T 3pie_A 405 KVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINXXXXXXXXXXXXXXXXXXXIY 484 (1155)
T ss_pred ccccccccccccccccCchhhhhhhHHHHHHHHHhhcccccccccccccceecccccccccccccccccccccccccccc
Confidence 0000000 0 000 0000 00000000011 1123467
Q ss_pred cccccchHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhhhhhcccccccCcCCCCCccccCCCccccccccccccccccCC
Q psy14280 501 FSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGE 580 (1891)
Q Consensus 501 ~~~~~~~K~~YY~~Kf~~~~~~~e~l~~i~~~YveGLqWVL~YYy~GcpSW~WyYPYHYAP~iSDl~~~~~~~i~Fe~g~ 580 (1891)
+.++.+||++||++|||++..+.++++++|++|||||||||+|||+|||||+||||||||||+|||+++.+++++|++|+
T Consensus 485 ~~~~~~~k~rYY~~Kf~~~~~~~e~~~~v~~~YveGL~WVL~YYy~Gc~SW~WyYPYHYAPfasDl~~~~~~~i~F~~g~ 564 (1155)
T 3pie_A 485 SERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQ 564 (1155)
T ss_pred hhhhhhHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHhHHHHHhCCCCCccccCccccccHHHHHHhhcccceeecCCC
Confidence 77889999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHhhhccCCcccCCCCHhhHhhhcCCCCcccccCCCcceecCCCCccceeeEEecCCcChHHHHHHHHhhcCCCC
Q psy14280 581 PFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLT 660 (1891)
Q Consensus 581 Pf~PfeQLmaVLPp~Sk~LLP~~yr~LMtdp~SPI~dFYP~~FeiDlNGKk~~WegVVLLPFIDe~rLl~Am~~~~~~LT 660 (1891)
||+|||||||||||+|+++||++||+||++|+|||+||||++|+||||||+++|||||||||||++|||+||+++++.||
T Consensus 565 Pf~PfeQLm~VLP~~S~~~LP~~~~~LM~d~~SpIidFYP~dF~iD~NGKk~~WqgVvlLPFIDe~rLl~a~~~~~~~Lt 644 (1155)
T 3pie_A 565 PFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLS 644 (1155)
T ss_pred CCCcHHHHhhhcChhhhccCcHhHHHhhcCCCCchhhhCccceeecCCCCccceeeEEECCcCCHHHHHHHHhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcEEEEecCCCCccccC--CCCCCCcccccceeecccCCccccCCccccccCCcccccccc-ccCCCccc
Q psy14280 661 DEERSRNRHGPMLVYTYSNVNLGTALA--PDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLY-VTHFPTLK 737 (1891)
Q Consensus 661 ~EEk~RN~~G~~llF~yd~~~~~~~~S--p~~Fpdi~~~~~~~~~~~~~~~~~p~~~l~~gL~~gv~~~~~-~~GFPTL~ 737 (1891)
+||++||++|.+++|.|+++...+|+| |++||+|.+|||++..|.++.+. +..+..||++|++++.. ++|||||+
T Consensus 645 ~eE~~RN~~g~~~lf~~~~~~~~~~~s~l~~~f~~i~~~~~~~~~~~~p~~~--~~~~~~~l~~g~~~g~~~l~GFPtl~ 722 (1155)
T 3pie_A 645 PDEKKRNSFGTDLIFIFNPQVDTVYKTPLAGLFNDIEHNHCIEREFIPESME--NVKFLFGLPKGAKLGASSLAGFPSLK 722 (1155)
T ss_pred HHHHhhccCCCcEEEEecCCCCceeCCCccccCCCcccceEEEEeecCCCcc--cceecccCCcccccCccccCCCCccc
Confidence 999999999999999999999999998 79999999999999999998764 56788999999999875 89999999
Q ss_pred cccceeeeecceeEEecCCCCCCcEEEEeccCCC---ccHHHHHHHHcCCEEEecCCccceEEEEEEecCCeeEEEe-cC
Q psy14280 738 HVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQV---PSLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISFD-KN 813 (1891)
Q Consensus 738 ~Lp~t~~L~~~gV~VFq~pSR~eSMiL~I~~~~~---~sl~eiAk~LLGK~VyVgWP~L~EAKVVsVSD~~~ky~l~-~~ 813 (1891)
||||+++|++++|+|||+|||++||||+|.+.+. .++.++|+++|||+||||||||+|||||+|||++++|++. ..
T Consensus 723 ~l~~~~~l~~~~v~vF~~~Sr~eSmvl~i~~~~~~~~~~~~~~a~~~LGk~V~V~WP~L~EAkVV~VsD~~~~y~~~~~~ 802 (1155)
T 3pie_A 723 TLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWPFLRESKLLSLITEETVYEGVKSG 802 (1155)
T ss_pred ccccceeEeecceEEccCCCCCCceEEEecCcccccCCCHHHHHHHHcCCEEEecCCceeEEEEEEEecCCeEEEEeecC
Confidence 9999999999999999999999999999999875 3688999999999999999999999999999999999853 22
Q ss_pred CC-Cccc-ccchhHHHHHHHHHHHHHHHHhcccceeecCeeEEEEEEeecceeEEecCCCceeEEeeccccccceecchh
Q psy14280 814 SG-PVFE-RAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSA 891 (1891)
Q Consensus 814 ~g-~~~~-~~~~~e~~~w~k~~~~I~e~Y~KR~GI~IGev~VLVhVrpL~Glkyv~~~~Gav~lvK~fS~~e~~YPlQlI 891 (1891)
++ .+.. .+..++.+.|.+++++|+++|++|+||++|++++||||++|+|+++ +.+|+ ++|+|++.+++||+|||
T Consensus 803 ~~~~vv~~~~~~~e~~~w~~~~~~i~~~y~kr~GI~ig~v~vLV~V~~l~Gl~~--~~~Ga--~vK~~s~~~~~yp~Qlv 878 (1155)
T 3pie_A 803 KLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILLDDISALAKVVPVNGLVR--NSDGS--YSKSFNETIEYYPLQLI 878 (1155)
T ss_pred CCceEEecCCCHHHHHHHHHHHHHHHHHHhhccCeeecceEEEEEEEEecceEE--cCCCc--EEEeecCcccccchhhh
Confidence 22 2222 3566889999999999999999999999999999999999999985 68898 78999999999999999
Q ss_pred ccccccccccC---ccCCcccccCCCCEEEEeCCCCCCCcEEEeccccccCcEEEEEEE---ecCCCChhhhhhhccccc
Q psy14280 892 VLNLQQARESL---EYKTIDEIFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFK---VQQEPDLSDLVHLQDDTV 965 (1891)
Q Consensus 892 V~DV~~~D~Rf---~~~pIeEeFPiGSkVffLG~~~YGs~G~Vvg~~~~~~~rlkVsv~---v~~EP~~~~~~~~~~~~~ 965 (1891)
|+||.++|+|| +++||+|+||+||+|||||+++||++|+|+|+++ +++++|.+. ++.||+|++.++++++..
T Consensus 879 V~dv~~~D~Rf~er~~~pieeeFP~gS~vf~LG~~~YG~~g~V~g~~~--~~rl~v~v~~~~~~~EP~~g~~~~~~~~~~ 956 (1155)
T 3pie_A 879 VEDVKNKDERYIEKEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNS--ETRLKLTVKKGSLRAEPNIGKVRAKLDSQA 956 (1155)
T ss_pred hhcccccccchhccCCCChHHhCCCCCEEEEeCCccCCCCeEEeeecC--CCeEEEEEeCCCCCCCCcHHHHHHHHHHhc
Confidence 99999999999 6789999999999999999999999999999863 338888875 568999999999999999
Q ss_pred ccccChHHHHHHcCCCHhhHhhhcceEEEecCCccCcceeeeeeeeeeccCCceecCceeccCCCCceEecHHHHHHHHH
Q psy14280 966 YNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKN 1045 (1891)
Q Consensus 966 ~~Y~Ps~~VAk~LGIspl~LSRITGS~~V~~gsr~~~~KiNIGLNLKF~~RnqkVlGYTRk~~~~~~WEYS~kAV~LI~e 1045 (1891)
.+|+|||+||++||||+
T Consensus 957 ~~Y~Psy~vAk~Lgis~--------------------------------------------------------------- 973 (1155)
T 3pie_A 957 LRFYPTQVXXXXXXXXX--------------------------------------------------------------- 973 (1155)
T ss_pred cCccccccccccccccc---------------------------------------------------------------
Confidence 99999999999999987
Q ss_pred HHHhChHHHHHhhcCCCCCccccCCCCCcchHHHHHHHHHHHhhCCCCccccccCCccccCHHHHHHHHHHHHHhhhcc-
Q psy14280 1046 YMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE- 1124 (1891)
Q Consensus 1046 Y~~kFPeLF~~L~~~~~~d~~~~~DIFp~~~~~kLkEIkaWLKe~~~~~le~Vscgse~Ldke~IkaIE~~idk~~k~~- 1124 (1891)
.+||+||+.|+. ..+.++|++|++|||++++ ++++|||++++|++++|++||++++++...+
T Consensus 974 --~~fp~lf~~l~~--------------~~~~~~lkei~aWLK~~~~-~fe~Vsl~~e~L~~~~v~~iE~~~~~~~~~~~ 1036 (1155)
T 3pie_A 974 --XXXXXXXXXXSS--------------AEADSILKTVADWLSEARK-PFVVVSLESDSLTKASMAAVESEIIKYVSLPD 1036 (1155)
T ss_pred --ccccccccccCc--------------chHHHHHHHHHHHHhccCC-CceeccCchhhcCHHHHHHHHHHHHHHhhccC
Confidence 579999999873 2478899999999999888 9999999999999999999999999988432
Q ss_pred ----ccEeeecCCCccccccCCCCCcCCCCCCCcccCCeEEEEeCCCCccccCceEEEEEecCCCCccceEEEEeecccC
Q psy14280 1125 ----KQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFP 1200 (1891)
Q Consensus 1125 ----K~v~l~Vkp~~L~kP~~~~~~L~PD~~q~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~~~~d~~vDVLFDepF~ 1200 (1891)
|++ -.|+|++|++|.++...| ++|+|+||||||||+|+|+||+|+|||||||+++++ ++++|||||+|||
T Consensus 1037 ~~~~k~~-~~VPr~allkP~~a~~~L---~~Q~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~~~~--~~~ldVvFD~~F~ 1110 (1155)
T 3pie_A 1037 SSEQKKL-AKVPREAILNAESSYVLL---RSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSIGK--NVSIQVLFDNEII 1110 (1155)
T ss_pred ccccccc-cCCCHHHeeCHHHhhccc---cCCcccCCCeEEEecCCCCCccccceEEEEEecCCC--ceEEEEEeccCcc
Confidence 222 259999999999998888 799999999999999999999999999999999864 7899999999999
Q ss_pred CCCccc--cCCCccccccCcceeecCcccccc
Q psy14280 1201 HGVKIR--CSESRGYRMPAQAMINLSYGERLC 1230 (1891)
Q Consensus 1201 GGttL~--cs~~RG~~Vp~ssLLNLT~gqr~~ 1230 (1891)
||+||+ |+++||++|++++|||||++|.+.
T Consensus 1111 ~G~tlggrcs~~RG~~v~~s~lLNlT~~Q~v~ 1142 (1155)
T 3pie_A 1111 AGNNFGGRLQTRRGLGLDSSFLLNLSDRQLVY 1142 (1155)
T ss_pred CCCcccccccccccccccHHHeEEcCCCceEE
Confidence 999996 999999999999999999999644
No 3
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-181 Score=1677.90 Aligned_cols=614 Identities=42% Similarity=0.757 Sum_probs=494.4
Q ss_pred CChhHHHHHHHhhcCCch-hhhcc--------cCCC-----------CCCEEEEecCCcccccccCCCCCCCCCCCHHHH
Q psy14280 1 MGVPKFFRYISERYPCLS-EVVRE--------YQIP-----------EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60 (1891)
Q Consensus 1 MGVP~FfrWL~erYP~i~-~~v~e--------~~ip-----------efDnLYLDMNGIIH~Csh~~~~d~~~~~seeei 60 (1891)
||||+|||||++|||+|. .++++ ..+| +|||||||||||||+|+|+++.+ .+.||++|
T Consensus 4 MGVP~ffRWLs~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~--~~~te~e~ 81 (899)
T 3fqd_A 4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRP--APETEDEM 81 (899)
T ss_dssp CCHHHHHHHHHHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSC--CCCSHHHH
T ss_pred cchHHHHHHHHHHCCccchhhcccccccccCCccccccccCCCCCCcccceEEEecchhhhhhcCCCCCC--CCCCHHHH
Confidence 999999999999999884 33322 1233 89999999999999999998754 46899999
Q ss_pred HHHHHHHHHHHHhhcccceEEEEeecCCCcchhhhHHHhhhhhhhhHHHHHHHHHhhhCCCCCcccccccccccccCccc
Q psy14280 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKK 140 (1891)
Q Consensus 61 f~~If~yID~L~~iVrPrKllyiAIDGVAPRAKMnQQRsRRFrsa~ea~~~~~~~k~~g~~l~~e~~fd~~~l~~~~p~k 140 (1891)
|.+||+|||+||++|||||+||||||||||||||||||+||||+|+++.+.+++
T Consensus 82 ~~~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~-------------------------- 135 (899)
T 3fqd_A 82 MVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEE-------------------------- 135 (899)
T ss_dssp HHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhHHH--------------------------
Confidence 999999999999999999999999999999999999999999999887543211
Q ss_pred ceeeeccCCCchhhhhhhhhccccchHHHHHHHHHHHHhCCCCC----CcccCCCCcccCCchHHHHHHHHHHHHHHHhh
Q psy14280 141 LFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLP----TEKRFDSNCITPGTPFMCRLHQQLRYFVKLKI 216 (1891)
Q Consensus 141 ~~~~aiDGvaP~aKmnqQr~rrf~s~keae~~~~ka~~~G~~lp----~e~~FDSN~ITPGTeFM~kL~~~Lk~fI~~Ki 216 (1891)
.+...+.+.+.|...+ .+..||||||||||+||.+|+.+|+|||++||
T Consensus 136 ----------------------------~~~~~~~~~~~g~~~~~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl 187 (899)
T 3fqd_A 136 ----------------------------LQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKL 187 (899)
T ss_dssp ----------------------------HHHHHHHHHHHTCCBCHHHHSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHhcCCCCccccccccCCCcCccCCccHHHHHHHHHHHHHHHHHh
Confidence 1112233344563222 46789999999999999999999999999999
Q ss_pred cCCcccccccccccccceEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecc
Q psy14280 217 TTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLRE 296 (1891)
Q Consensus 217 stDp~W~~~~~~~~~~~lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILRE 296 (1891)
++|+.|++ ++|||||++||||||||||+|||++|++|+||||++|||||+|||||||||+||+|||+||||
T Consensus 188 ~~dp~W~~---------~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE 258 (899)
T 3fqd_A 188 NSDPCWRN---------VRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLRE 258 (899)
T ss_dssp TSCGGGTT---------CEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEE
T ss_pred hcCccccc---------ceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEee
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCC----CCCcc----------cCCCCcceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhh
Q psy14280 297 EVKFNTKSNK----GGSQI----------VTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGF 362 (1891)
Q Consensus 297 eV~f~~~~~k----~~~~~----------~~~~~~~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~f 362 (1891)
+|.|+..+.. .|... .....+.|+||||++|||||..||... .++|+||+||||||||||||
T Consensus 259 ~v~~~~~q~~~~~~~~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~----~~~f~~d~ERiIDDfVfmcF 334 (899)
T 3fqd_A 259 DVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVP----NLPFPFDLERAIDDWVFFIF 334 (899)
T ss_dssp CCC---------CTTTTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCT----TCSSCCCHHHHHHHHHHHGG
T ss_pred ecccCcCccccchhhhccccccccccccccccccCceEEEeHHHHHHHHHHHhccc----CCCCCchhhhhhhhhhhhhH
Confidence 9998753221 11000 012346799999999999999999853 57899999999999999999
Q ss_pred hhccCCCCCCCCccccCCcHHHHHHHHHHHcccCCCccccCCeecHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhC-
Q psy14280 363 LIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMG- 441 (1891)
Q Consensus 363 LvGNDFLPhLP~L~I~eGald~L~~~Yk~~Lp~l~gYLte~G~INl~rL~~fL~~Ls~~E~~~F~~~~~d~~~~e~k~~- 441 (1891)
|+|||||||||+|+|++|||+.|+.+|+++||+++||||++|+|||+||+.||+.||++|.++|+++..+.++++.+..
T Consensus 335 fvGNDFLPhlP~l~I~egaid~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~L~~~E~~iF~~r~~~e~~~~~~~kr 414 (899)
T 3fqd_A 335 FVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRR 414 (899)
T ss_dssp GGCCSSSCCCTTCCGGGTHHHHHHHHHHHHHHHHSSCSEETTEECHHHHHHHHHHHHTTHHHHHHHHHHHHTTTC-----
T ss_pred hhCcccCCCCCccCcCCChHHHHHHHHHHHHHHcCCeeecCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988766433221110
Q ss_pred CCcchh----------------------------------hhhhccc----------cC---------------------
Q psy14280 442 KKFSDV----------------------------------FHKEKSK----------EM--------------------- 456 (1891)
Q Consensus 442 ~k~~e~----------------------------------~k~~~~k----------~~--------------------- 456 (1891)
++..+. .+..... ..
T Consensus 415 r~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 494 (899)
T 3fqd_A 415 RQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNRSLGATNRELINN 494 (899)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccccccccccCccccccccccccccccchhhhhhhhhhc
Confidence 000000 0000000 00
Q ss_pred ------------------CccHHHHHhhcC----C-CCCCChhh--h-hccc-------c---ccccc------------
Q psy14280 457 ------------------DPDLAALIKATD----D-DYDDGTEE--V-LNYA-------N---YEEYY------------ 488 (1891)
Q Consensus 457 ------------------~~~l~~l~k~~~----~-~~~d~~~~--~-~~~~-------~---~~~i~------------ 488 (1891)
+++.++.++... . ...+++++ . +.|. . .+.+.
T Consensus 495 ~~~~~~~~~~~~~~~~~~n~~~a~~lk~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (899)
T 3fqd_A 495 RAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKRKA 574 (899)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhhhhhhhhhcccchhHHHHHHHHhhcccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence 000000011000 0 00000000 0 0000 0 00000
Q ss_pred -CCCcchhhhccccccccchHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhhhhhcccccccCcCCCCCccccCCCccccc
Q psy14280 489 -YSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567 (1891)
Q Consensus 489 -~~~d~ee~~~~~~~~~~~~K~~YY~~Kf~~~~~~~e~l~~i~~~YveGLqWVL~YYy~GcpSW~WyYPYHYAP~iSDl~ 567 (1891)
...++.+..+.+.....+||++||++|||++..+.++++++|++|||||||||+|||+|||||+||||||||||||||+
T Consensus 575 ~~~~~~~~~~d~v~l~e~g~K~rYY~~KF~~~~~d~e~~~~v~~~YvEGL~WVL~YYYqGc~SW~WyYPYHYAPfaSD~~ 654 (899)
T 3fqd_A 575 PDSTEENENTDTVRLYEPGYRERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPFAADFK 654 (899)
T ss_dssp ----------CCSCTTSTTHHHHHHHHTSCCCTTCTHHHHHHHHHHHHHHHHHHHHHHTCCSCSSCCCCCSSCCCGGGCC
T ss_pred ccccccccchhhhhhcccchHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCcccccchHHHHh
Confidence 0000111122233334689999999999999888899999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCChHhHhhhccCCcccCCCCHhhHhhhcCCCCcccccCCCcceecCCCCccceeeEEecCCcChHH
Q psy14280 568 DFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVK 647 (1891)
Q Consensus 568 ~~~~~~i~Fe~g~Pf~PfeQLmaVLPp~Sk~LLP~~yr~LMtdp~SPI~dFYP~~FeiDlNGKk~~WegVVLLPFIDe~r 647 (1891)
++.+++|+|++|+||+||||||||||++|+++||++||+||++|+|||+||||++|+||||||+++||||||||||||+|
T Consensus 655 ~~~~~~i~Fe~G~PF~PfEQLMaVLPaaS~~~LP~~y~~LMtdp~SpIiDFYP~dFeiDmNGKk~~WqgVvlLPFIDE~R 734 (899)
T 3fqd_A 655 DLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENR 734 (899)
T ss_dssp SCTTCCCCCCCCCCCCHHHHHHHHCCGGGGGGSCHHHHHHHHCTTCTTGGGCCSCCCEECSSSSCTTSSEECCCCCCHHH
T ss_pred hcccCceecCCCCCCChHHHHHhhcCHhhhCcccHHHHHHhcCCCCcchhhCcccccccCCCCccccceEEecCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHhhccCCCcEEEEecCCCCc
Q psy14280 648 LIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLG 683 (1891)
Q Consensus 648 Ll~Am~~~~~~LT~EEk~RN~~G~~llF~yd~~~~~ 683 (1891)
||+||+++++.||+||++||++|.+++|+++.+...
T Consensus 735 LL~A~~~~~~~LT~eEk~RN~~G~~~lf~~~~~~l~ 770 (899)
T 3fqd_A 735 LLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPMF 770 (899)
T ss_dssp HHHHHHTTGGGSCHHHHHTTSCCCCEEEEETTSTTH
T ss_pred HHHHHHHhhccCCHHHHHhccCCCcEEEEeCCCchH
Confidence 999999999999999999999999999999877644
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=98.21 E-value=1e-06 Score=104.00 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=60.2
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+|. .|+|+|-=|--+-+.- ..++|++.|.|+++++- +++ +|.- ..... .+ .
T Consensus 144 ip~i~----ap~EADa~iA~La~~g---------~~~~i~S~D~D~l~~g~----~~v--~~~~-~~~~~-~~------~ 196 (340)
T 1b43_A 144 IPIVQ----APSEGEAQAAYMAAKG---------SVYASASQDYDSLLFGA----PRL--VRNL-TITGK-RK------L 196 (340)
T ss_dssp CCEEE----CSSCHHHHHHHHHHHT---------SSSEEECSSSHHHHTTC----SEE--EEST-TTCEE-EE------C
T ss_pred CcEEE----cChhHHHHHHHHHHcC---------CEEEEEccCCCcceecC----cEE--EEEe-ccCCC-cc------C
Confidence 66665 5799999887766642 35789999999999972 344 3321 11110 00 0
Q ss_pred CCCc-----ceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCC-CCCCccc
Q psy14280 314 PEET-----KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP-NLPDLHI 377 (1891)
Q Consensus 314 ~~~~-----~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLP-hLP~L~I 377 (1891)
|... .+.+++...+.+.+ . .+ -+.||.+|.|+|+||+| .+|++.+
T Consensus 197 p~~~~~v~~~~~~~~~~~v~~~~----g-----------l~----~~q~id~~~L~G~Dy~p~gv~GiG~ 247 (340)
T 1b43_A 197 PGKNVYVEIKPELIILEEVLKEL----K-----------LT----REKLIELAILVGTDYNPGGIKGIGL 247 (340)
T ss_dssp TTSSCEEEECCEEEEHHHHHHHH----T-----------CC----HHHHHHHHHHHCCTTSTTCSTTCCH
T ss_pred cccccccccceeEEEHHHHHHHh----C-----------CC----HHHHHHHHHhcCCCCCCCCCCCccH
Confidence 1111 23456665443332 1 11 25688999999999999 9999853
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=98.09 E-value=3.6e-06 Score=98.89 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=59.8
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+| ..|||+|-=|--+-++ +..++|++.|.|+++++ + +++ +|.- ...
T Consensus 144 i~~i----~apgEAD~~ia~La~~---------g~~~~I~S~D~Dll~~~-~---~~v--~~~~---~~~---------- 191 (326)
T 1a76_A 144 IPYV----EAPSEGEAQASYMAKK---------GDVWAVVSQDYDALLYG-A---PRV--VRNL---TTT---------- 191 (326)
T ss_dssp CCEE----ECSSCHHHHHHHHHHT---------TSSSEEECSSSGGGGGT-C---SEE--EESS---SSC----------
T ss_pred CCeE----ECCccHHHHHHHHHHC---------CCEEEEecCCcccceec-C---CEE--EEee---cCC----------
Confidence 5555 4689999977666553 34689999999999997 2 343 3311 100
Q ss_pred CCCcceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCC-CCCCcc
Q psy14280 314 PEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP-NLPDLH 376 (1891)
Q Consensus 314 ~~~~~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLP-hLP~L~ 376 (1891)
...+.+++..-+.+.+ . .+ -+.||.+|.|+|+||+| .+|++.
T Consensus 192 --~~~~~~~~~~~v~~~~----g-----------l~----~~q~id~~~L~GsD~~p~GvpGiG 234 (326)
T 1a76_A 192 --KEMPELIELNEVLEDL----R-----------IS----LDDLIDIAIFMGTDYNPGGVKGIG 234 (326)
T ss_dssp --SSCCEEEEHHHHHHHH----T-----------CC----HHHHHHHHHHHCCTTSTTTTTTCC
T ss_pred --CCceEEEEHHHHHHHc----C-----------CC----HHHHHHHHHHcCCCCCCCCCCCcC
Confidence 0135667775544332 1 11 25789999999999999 999984
No 6
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=98.03 E-value=1.2e-06 Score=112.25 Aligned_cols=41 Identities=63% Similarity=1.002 Sum_probs=36.9
Q ss_pred cccCcccceeeeccCCCchhhhhhhhhccccchHHHHHHHH
Q psy14280 134 KFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQ 174 (1891)
Q Consensus 134 ~~~~p~k~~~~aiDGvaP~aKmnqQr~rrf~s~keae~~~~ 174 (1891)
..++|+|++|||||||||+|||||||.|||+++++++...+
T Consensus 94 ~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~ 134 (899)
T 3fqd_A 94 AMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEE 134 (899)
T ss_dssp HHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhHH
Confidence 34789999999999999999999999999999998876544
No 7
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=98.01 E-value=2.4e-05 Score=93.06 Aligned_cols=91 Identities=23% Similarity=0.402 Sum_probs=50.9
Q ss_pred CChhHHHHHHHhhcCCchhhhcccCCCCCCEEEEecCCcccccccCC-----CCCCCCCCCHHHHHHHHHHHHHHH-Hhh
Q psy14280 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPN-----DNDPHFRITEKQIFQDIFHYIEIL-FRM 74 (1891)
Q Consensus 1 MGVP~FfrWL~erYP~i~~~v~e~~ipefDnLYLDMNGIIH~Csh~~-----~~d~~~~~seeeif~~If~yID~L-~~i 74 (1891)
|||.||+.||...-+.+ .+++.. =--|=||..+.||...... .+.. + ..+..-+++.+..| -.-
T Consensus 1 MGI~GL~~~L~~~~~~~--~l~~l~---Gk~vaIDas~wL~~~~~~~~~~l~~G~~----t-~~l~~~~~r~l~~L~~~g 70 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPI--HVRKYK---GQVVAVDTYCWLHKGAIACAEKLAKGEP----T-DRYVGFCMKFVNMLLSHG 70 (352)
T ss_dssp -CCTTHHHHTTTSEEEE--EGGGGT---TSEEEEETHHHHHHHHHHTHHHHHTTCC----C-CHHHHHHHHHHHHHHHTT
T ss_pred CCcchHHHHHHhhCCcC--CHHHhC---CcEEEEecHHHHHHhhhccchhhcCCCC----c-HHHHHHHHHHHHHHHHcC
Confidence 99999999998765432 112211 0257889999999732211 1111 1 12222233333332 233
Q ss_pred cccceEEEEeecCCCcchhhhHHHhhhhhhh
Q psy14280 75 IQPKKLFFMAIDGVAPRAKMNQQRGRRFRSA 105 (1891)
Q Consensus 75 VrPrKllyiAIDGVAPRAKMnQQRsRRFrsa 105 (1891)
|+| ++.+||.+|-.|-.....||-+..
T Consensus 71 I~P----vfVFDG~~~p~Kk~~~~~Rr~~r~ 97 (352)
T 3qe9_Y 71 IKP----ILVFDGCTLPSKKEVERSRRERRQ 97 (352)
T ss_dssp CEE----EEEECCSCCTTTHHHHHHHHHHHH
T ss_pred CEE----EEEECCCCcHHHHHHHHHHHHHHH
Confidence 554 566899999898877655555543
No 8
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=97.93 E-value=5.2e-05 Score=89.45 Aligned_cols=104 Identities=17% Similarity=0.295 Sum_probs=58.0
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+| ..|||+|.= +.++-. .+..++|++.|.|+++|+- +++ +|.-...+..+.... .+.
T Consensus 143 i~~i----~apgeAEA~-lA~la~--------~g~~~~I~S~D~Dllql~~----~~v--~~~l~~~~~~~~~~~-~~~- 201 (336)
T 1rxw_A 143 IPFV----DAPSEGEAQ-AAYMAA--------KGDVEYTGSQDYDSLLFGS----PRL--ARNLAITGKRKLPGK-NVY- 201 (336)
T ss_dssp CCEE----ECSSCHHHH-HHHHHH--------TTSSSEEECSSSHHHHTTC----SEE--EESCCC--------------
T ss_pred CCEE----EcCchHHHH-HHHHHH--------cCCeeEEEcCCCCcceecC----CeE--EEeccccccccCCcc-ccc-
Confidence 5555 468999994 444331 1246899999999999982 444 332111111100000 000
Q ss_pred CCCcceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCcccc
Q psy14280 314 PEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHII 378 (1891)
Q Consensus 314 ~~~~~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~I~ 378 (1891)
-+..+.+++..-+.+.+ . .+ -+.|+.+|.|+|+||+|.+|++-..
T Consensus 202 -~~~~~~~~~~~~v~~~~----g-----------l~----~~q~id~~~L~GsD~ipGv~GiG~K 246 (336)
T 1rxw_A 202 -VDVKPEIIILESNLKRL----G-----------LT----REQLIDIAILVGTDYNEGVKGVGVK 246 (336)
T ss_dssp --CCCCEEEEHHHHHHHH----T-----------CC----HHHHHHHHHHHCBTTBCCCTTCCHH
T ss_pred -cccceEEeEHHHHHHHc----C-----------CC----HHHHHHHHhhcCCCCCCCCCCcCHH
Confidence 00134566665443332 1 11 2578999999999999999997543
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=97.33 E-value=0.0009 Score=80.39 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=59.3
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+|. .|||+|-=|--+-+.- ...+|.+.|.|+++++- +++ +|.- .+.. .+
T Consensus 149 i~~i~----apgEADd~iA~La~~g---------~~~~iiS~D~Dll~~g~----~~v--~~~~-~~~~--~~------- 199 (379)
T 1ul1_X 149 IPYLD----APSEAEASCAALVKAG---------KVYAAATEDMDCLTFGS----PVL--MRHL-TASE--AK------- 199 (379)
T ss_dssp CCEEE----CSSCHHHHHHHHHHHT---------SSSEEECSCTHHHHTTC----SEE--EECS-SCCC---C-------
T ss_pred CCeec----CCCcHHHHHHHHHhcC---------CeEEEEecCcCcccccc----ceE--EEEe-cccc--cC-------
Confidence 55554 5899999887776652 24789999999999982 343 3321 1110 00
Q ss_pred CCCcceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCcc
Q psy14280 314 PEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLH 376 (1891)
Q Consensus 314 ~~~~~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~ 376 (1891)
...+..++..-+.+.+ . .+ -+.||.+|.|+|+||.++||++.
T Consensus 200 --k~~~~~~~~~~v~~~~----g-----------l~----~~q~id~~~L~G~D~~d~IpGIG 241 (379)
T 1ul1_X 200 --KLPIQEFHLSRILQEL----G-----------LN----QEQFVDLCILLGSDYCESIRGIG 241 (379)
T ss_dssp --CCCEEEEEHHHHHHHH----T-----------CC----HHHHHHHHHHHHCSSSCCCTTCC
T ss_pred --cCCeEEEeHHHHHHHh----C-----------CC----HHHHHHHHHHhCCCcCCCCCCcC
Confidence 0235567765443332 1 11 25688999999999999999874
No 10
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=97.24 E-value=0.002 Score=77.16 Aligned_cols=109 Identities=25% Similarity=0.418 Sum_probs=63.0
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+|.+ |||+|-=| .++-+ -+....|++.|.|+++++- +++ +|.- ......+ .
T Consensus 158 Ip~i~a----pgEADaqi-A~La~--------~g~~~~I~S~D~D~l~fg~----~~v--~~~l-~~~~~~~-------~ 210 (363)
T 3ory_A 158 IPWVQA----PAEGEAQA-AYIVK--------KGDAYASASQDYDSLLFGS----PKL--VRNL-TISGRRK-------L 210 (363)
T ss_dssp CCEEEC----SSCHHHHH-HHHHH--------TTSCSEEECSSSHHHHTTC----SEE--EEST-TTCEEEE-------C
T ss_pred CCEEEe----CccHHHHH-HHHHH--------CCCeEEEECCCcCccccCC----CeE--EEEe-ecccccc-------C
Confidence 566654 88999854 44432 1356889999999999973 333 3321 1111100 0
Q ss_pred CCCc-----ceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCC-CCCCccccCCcHHHHHH
Q psy14280 314 PEET-----KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP-NLPDLHIINGALPLLYK 387 (1891)
Q Consensus 314 ~~~~-----~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLP-hLP~L~I~eGald~L~~ 387 (1891)
|... .+.+++..-+.+.+ . .+ -+-||-+|.|+|+||+| .+|++-... |+ .|++
T Consensus 211 p~~~~~v~~~~~~~~~~~v~~~~----g-----------l~----~~q~id~~~L~GsDy~p~GVpGIG~Kt-A~-kLl~ 269 (363)
T 3ory_A 211 PRKNEYVEVKPELIELDKLLVQL----G-----------IT----LENLIDIGILLGTDYNPDGFEGIGPKK-AL-QLVK 269 (363)
T ss_dssp SSTTCEEEECCEEEEHHHHHHHH----T-----------CC----HHHHHHHHHHHCBTTBTTCSTTCCHHH-HH-HHHH
T ss_pred CccccccccceEEEcHHHHHHHh----C-----------cC----HHHHHHHHHHhCCCCCCCCCCCcCHHH-HH-HHHH
Confidence 1111 23456665444332 1 11 14688899999999999 999985332 33 4456
Q ss_pred HHH
Q psy14280 388 VYQ 390 (1891)
Q Consensus 388 ~Yk 390 (1891)
.|.
T Consensus 270 ~~g 272 (363)
T 3ory_A 270 AYG 272 (363)
T ss_dssp HHT
T ss_pred HcC
Confidence 665
No 11
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=97.20 E-value=0.0001 Score=97.39 Aligned_cols=32 Identities=75% Similarity=1.102 Sum_probs=29.9
Q ss_pred ccCcccceeeeccCCCchhhhhhhhhccccch
Q psy14280 135 FCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSA 166 (1891)
Q Consensus 135 ~~~p~k~~~~aiDGvaP~aKmnqQr~rrf~s~ 166 (1891)
.++|+|++|||+|||||+|||||||.|||+++
T Consensus 74 ~vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa 105 (1155)
T 3pie_A 74 TIKPKQTFYMAIDGVAPRAKMNQQRARRFRTA 105 (1155)
T ss_pred hcCcceEEEEEecCCCChhHHHHHHHHHHHhh
Confidence 47899999999999999999999999999665
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.14 E-value=0.00014 Score=96.91 Aligned_cols=35 Identities=69% Similarity=1.158 Sum_probs=32.6
Q ss_pred ccCcccceeeeccCCCchhhhhhhhhccccchHHH
Q psy14280 135 FCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA 169 (1891)
Q Consensus 135 ~~~p~k~~~~aiDGvaP~aKmnqQr~rrf~s~kea 169 (1891)
.++|+|++|||+|||||+|||||||.|||++++++
T Consensus 74 ~vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~ 108 (1140)
T 2y35_A 74 LIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREA 108 (1140)
T ss_dssp HHCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred eeccceeEEEEecCCCchhHHHHHHHHHhhhhhhh
Confidence 47899999999999999999999999999988765
No 13
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=96.69 E-value=0.0056 Score=72.71 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=58.5
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+|. .|||+|-=|--.-+. +...+|.+.|.|+++++- +++ +|. ..+... +
T Consensus 149 ip~i~----ap~EADd~ia~La~~---------g~v~~i~s~D~D~l~~~~----~~v--~~~-~~~~~~--~------- 199 (341)
T 3q8k_A 149 IPYLD----APSEAEASCAALVKA---------GKVYAAATEDMDCLTFGS----PVL--MRH-LTASEA--K------- 199 (341)
T ss_dssp CCEEE----CSSCHHHHHHHHHHT---------TSSSEEECSCTHHHHTTC----SEE--EES-CCCCSS--C-------
T ss_pred CCEEE----CCccHHHHHHHHHhc---------CCeEEEEcCCccccccCC----cEE--EEc-cccccc--C-------
Confidence 56665 479999987766653 135678899999999972 333 332 112111 1
Q ss_pred CCCcceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCCCCCCcc
Q psy14280 314 PEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLH 376 (1891)
Q Consensus 314 ~~~~~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLPhLP~L~ 376 (1891)
...+..++..-+.+. +. .+. +-||-+|.|+|+||+|++|++-
T Consensus 200 --~~~~~~~~~~~v~~~----~g-----------l~~----~q~id~~~L~G~D~~~gipGiG 241 (341)
T 3q8k_A 200 --KLPIQEFHLSRILQE----LG-----------LNQ----EQFVDLCILLGSDYCESIRGIG 241 (341)
T ss_dssp --CCEEEEEEHHHHHHH----HT-----------CCH----HHHHHHHHHHCCSSSCCCTTCC
T ss_pred --CCceEEEcHHHHHHH----hC-----------CCH----HHHHHHHHhcCCCCCCCCCCcc
Confidence 113556666544332 21 112 4578899999999999999875
No 14
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0099 Score=70.59 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=59.2
Q ss_pred eEEEEcCCCCCCchhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccC
Q psy14280 234 VCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT 313 (1891)
Q Consensus 234 lkVIlSgs~VPGEGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~ 313 (1891)
+.+|. .|||+|-=|--.-+. +..++|++.|.|+++++- +++.+. -...+.++... ..+.
T Consensus 141 i~~i~----ap~EADa~ia~La~~---------g~~~~I~S~D~D~l~~~~----~~v~~~--~~~~~~~~~p~-~~~~- 199 (346)
T 2izo_A 141 IPIVQ----APSEGEAEAAYLNKL---------GLSWAAASQDYDAILFGA----KRLVRN--LTITGKRKLPN-KDVY- 199 (346)
T ss_dssp CCEEE----CSSCHHHHHHHHHHT---------TSSSEEECSSSHHHHTTC----SEEEES--SCC------------C-
T ss_pred CCEEE----cCCcHHHHHHHHHhC---------CCeEEEECCCCCcceecC----CeEEEE--ecccccccCcc-cccc-
Confidence 55554 589999987655441 246899999999999883 343322 11111110000 0000
Q ss_pred CCCcceEEEehHHHHHHHHHHhcCCCCCCCCCCcCcchhhHHHHHHhhhhhccCCCC-CCCCccc
Q psy14280 314 PEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIP-NLPDLHI 377 (1891)
Q Consensus 314 ~~~~~F~llhIslLREYL~~Ef~~lk~~~~l~f~~D~ERIIDDFVfL~fLvGNDFLP-hLP~L~I 377 (1891)
-+..+.+++...+.+.+ . .+ -+.||.+|.|+|+||+| .+|++..
T Consensus 200 -~~~~~~~~~~~~v~~~~----g-----------l~----~~q~id~~~L~G~D~~p~Gv~GIG~ 244 (346)
T 2izo_A 200 -VEIKPELIETEILLKKL----G-----------IT----REQLIDIGILIGTDYNPDGIRGIGP 244 (346)
T ss_dssp -CCCCCEEEEHHHHHHHH----T-----------CC----HHHHHHHHHHHCCSSSTTCSTTCCH
T ss_pred -cccceEEEEHHHHHHHc----C-----------CC----HHHHHHHHHHcCCCCCCCCCCCcCH
Confidence 00134566765443332 1 11 25689999999999999 9999854
No 15
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=91.52 E-value=2.6 Score=49.35 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=56.6
Q ss_pred CCCC-chhHHHHHHHHHhhcCCCCCCCCcEEEEccCchhhhhhcccCCCcEEEecccccccccCCCCCCcccCCCCcceE
Q psy14280 242 ETPG-EGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFF 320 (1891)
Q Consensus 242 ~VPG-EGEHKImdfIR~~r~qp~ydpN~rHcIYGlDADLImLgLatHep~f~ILREeV~f~~~~~k~~~~~~~~~~~~F~ 320 (1891)
..|| |++==|--.-++.... ....+|++.|-|+..|. .+++.++.- . .+.
T Consensus 122 ~~~g~EADDviatLa~~~~~~-----G~~v~IvS~DkDl~Qlv----~~~v~v~~~----~----------------~~~ 172 (290)
T 1exn_A 122 TIRGVEADDMAAYIVKLIGHL-----YDHVWLISTDGDWDTLL----TDKVSRFSF----T----------------TRR 172 (290)
T ss_dssp CCTTBCHHHHHHHHHHHHGGG-----SSCEEEECSCGGGGGGC----CSSEEEEET----T----------------TTE
T ss_pred EECCcCHHHHHHHHHHHHHHC-----CCcEEEEeCCCChhhcC----CCCEEEEEC----C----------------CCE
Confidence 3799 9998887777765432 23688999999998876 356766531 0 122
Q ss_pred EEehHHHHHHHHHHhcCCCCCCCCCCcCcc-hhhHHHHHHhhhhhc--cCCCCCCCCcc
Q psy14280 321 LLHLSLMRDYLELEFGKLKEPGVLSFPFSI-ENIIDDWVLMGFLIG--NDFIPNLPDLH 376 (1891)
Q Consensus 321 llhIslLREYL~~Ef~~lk~~~~l~f~~D~-ERIIDDFVfL~fLvG--NDFLPhLP~L~ 376 (1891)
+++..-+.+ +|. ... ++ |+-++.|+| .|++|.+|++-
T Consensus 173 ~~~~~~v~e----k~G-----------v~p~~q----~iD~~~L~GD~sDniPGVpGIG 212 (290)
T 1exn_A 173 EYHLRDMYE----HHN-----------VDDVEQ----FISLKAIMGDLGDNIRGVEGIG 212 (290)
T ss_dssp EECGGGHHH----HHS-----------SSSHHH----HHHHHHHHCBGGGTBCCCTTCC
T ss_pred EEcHHHHHH----HcC-----------CCHHHH----HHHHHHhcCCCcCCCCCCCcCC
Confidence 344433322 222 122 33 555799999 99999999974
No 16
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=65.04 E-value=12 Score=37.00 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=45.5
Q ss_pred CCCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcc
Q psy14280 1150 PDTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQA 1219 (1891)
Q Consensus 1150 ~~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ss 1219 (1891)
....+.+||||..-.. +.+||| ||-.... ....+-|-||+| .|-++ + .|.+.+|..|+++.
T Consensus 9 ~~~~~~vG~rV~V~~~------~~~GtVryvG~v~~~--~G~wvGVElDep-~GKnDGsv~G~rYF~C~~~~G~Fvr~~~ 79 (91)
T 1whk_A 9 GTVKLHEGSQVLLTSS------NEMATVRYVGPTDFA--SGIWLGLELRSA-KGKNDGAVGDKRYFTCKPNYGVLVRPSR 79 (91)
T ss_dssp CCCCCCSSCEEEESSS------CCEEEECCCEECSSS--SSEEEEEECSSS-CSSCCSEETTEECCCCSTTCCCEECGGG
T ss_pred CCccccCCCEEEECCC------CeEEEEEEeeeCCCC--CCeEEEEEeCCC-CCcCCCEECCEEEeecCCCeEEEEchHH
Confidence 4557899999965321 578888 6766543 356788899999 44332 2 29999999999887
Q ss_pred eee
Q psy14280 1220 MIN 1222 (1891)
Q Consensus 1220 LLN 1222 (1891)
|--
T Consensus 80 v~~ 82 (91)
T 1whk_A 80 VTY 82 (91)
T ss_dssp EEC
T ss_pred cEE
Confidence 643
No 17
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=50.18 E-value=37 Score=33.63 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=46.2
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||..... +.+||| ||-+... ....+-|-||+| .|-++ + .|.+.+|..|+++.|
T Consensus 10 ~~~~~vG~rv~v~~~------~~~GtVryvG~~~~~--~G~wvGVelDep-~GKndGsv~G~rYF~C~~~~G~Fvr~~~v 80 (93)
T 1txq_A 10 ARPLRVGSRVEVIGK------GHRGTVAYVGATLFA--TGKWVGVILDEA-KGKNDGTVQGRKYFTCDEGHGIFVRQSQI 80 (93)
T ss_dssp -CCCCTTCEEEETTT------CCEEEEEEEECCSSS--SSCEEEEEESSS-CSSBSSEETTEESCCCCTTCEEEECGGGE
T ss_pred cccCCCCCEEEECCC------CeEEEEEEeeecCCC--CCcEEEEEeCCC-CCCCCCEECCEEeeecCCCeEEEEcHHHe
Confidence 456899999965421 578998 6655432 467899999998 44332 2 299999999999987
Q ss_pred eecCcc
Q psy14280 1221 INLSYG 1226 (1891)
Q Consensus 1221 LNLT~g 1226 (1891)
--+..+
T Consensus 81 ~~~~~~ 86 (93)
T 1txq_A 81 QVFEDG 86 (93)
T ss_dssp EECC--
T ss_pred EEccCC
Confidence 655443
No 18
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=48.33 E-value=36 Score=33.83 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--------c-ccCCCccccccCcc
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--------I-RCSESRGYRMPAQA 1219 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--------L-~cs~~RG~~Vp~ss 1219 (1891)
...+.+||||-.-... . --|||| ||...........|-|=||+| +|-++ + .|...+|..|+...
T Consensus 7 ~~~i~VG~Rc~V~~~~-~---~rrGtVrfvG~~~~~~~~G~wVGVelDEP-~GknDGsv~G~ryF~~c~~~~g~fV~~~d 81 (92)
T 1whm_A 7 GPPLEINSRVSLKVGE-T---IESGTVIFCDVLPGKESLGYFVGVDMDNP-IGNWDGRFDGVQLCSFACVESTILLHIND 81 (92)
T ss_dssp SCSSCTTCEEEEEETT-E---EEEEEEEEEECCTTCTTTCCEEEEEESSS-CCCCCSEETTEESCSSCCTTTEEEEEGGG
T ss_pred ccCccccCeEEEcCCC-c---eeeEEEEEEecCCCcCCCCeEEEEEcCCC-CCCCCCeECCEEeccccCCCcceEccccc
Confidence 4457899999875432 1 378999 787653212357899999999 44322 2 29999999999999
Q ss_pred eeecCcc
Q psy14280 1220 MINLSYG 1226 (1891)
Q Consensus 1220 LLNLT~g 1226 (1891)
++.-+.+
T Consensus 82 ~~~e~~~ 88 (92)
T 1whm_A 82 IIPESSG 88 (92)
T ss_dssp EEECCCC
T ss_pred CcccccC
Confidence 9876543
No 19
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=46.67 E-value=54 Score=31.93 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=47.8
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||.. .+ ..+||| ||-.... ....+-|-||+|- |-++ + .|.+.+|..|+++.|
T Consensus 5 ~~~~~vG~rv~v---~g----~~~GtVryvG~~~~~--~G~wvGVelDep~-GkndGsv~G~rYF~c~~~~G~Fv~~~kv 74 (84)
T 2cp3_A 5 SSGLRLGDRVLV---GG----TKTGVVRYVGETDFA--KGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 74 (84)
T ss_dssp SCSCCTTCEEEE---TT----TEEEEEEEEEECSSS--SSEEEEEEESSSC-CSBSSEETTEESSCCCTTTEEEEEGGGE
T ss_pred ccccccCCEEEE---CC----CCeEEEEEeccCCCC--CCeEEEEEeCCCC-CcCCCEECCEEeeecCCCeEEEEcHHHe
Confidence 446899999976 22 247998 6665543 4678999999993 4332 2 199999999999999
Q ss_pred eecCcc
Q psy14280 1221 INLSYG 1226 (1891)
Q Consensus 1221 LNLT~g 1226 (1891)
.-++.+
T Consensus 75 ~~~~~~ 80 (84)
T 2cp3_A 75 IRIGSG 80 (84)
T ss_dssp EECCCS
T ss_pred EEcccC
Confidence 877654
No 20
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=45.99 E-value=64 Score=31.98 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=51.0
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecC-CCCccceEEEEeeccc--CCCCc--c------ccCCCccccccC
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQG-ETSYDAMYDVVFDKPF--PHGVK--I------RCSESRGYRMPA 1217 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~-~~~~d~~vDVLFDepF--~GGtt--L------~cs~~RG~~Vp~ 1217 (1891)
...+.+||||....+.+ |.+.+||| ||-+.. .-.....+-|-||+|. .|-++ + .|.+.+|..|++
T Consensus 5 ~~~~~VG~rV~V~~~~~--~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~ 82 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSG--EEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVAL 82 (95)
T ss_dssp CCCCCSSCEEEEECSSS--SCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECG
T ss_pred cccCcCCCEEEEecCCC--ccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcH
Confidence 45689999997654432 34678999 565431 0123568999999997 55432 2 299999999999
Q ss_pred cceeecCcc
Q psy14280 1218 QAMINLSYG 1226 (1891)
Q Consensus 1218 ssLLNLT~g 1226 (1891)
+.|--+..+
T Consensus 83 ~~v~~~~~~ 91 (95)
T 1whl_A 83 DKLELIESG 91 (95)
T ss_dssp GGEEECCSC
T ss_pred HHeEEcCcC
Confidence 988766543
No 21
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=45.69 E-value=42 Score=34.36 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=46.0
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||....+ +.+||| ||-.... ....+-|-||+| .|-++ + .|.+.+|..|+++.|
T Consensus 31 ~~~l~VG~RV~V~~~------g~~GtVRyvG~v~~~--~G~wvGVElDep-~GKnDGsv~G~rYF~C~p~~GiFVr~~~v 101 (112)
T 2coy_A 31 ARPLRVGSRVEVIGK------GHRGTVAYVGATLFA--TGKWVGVILDEA-KGKNDGTVQGRKYFTCDEGHGIFVRQSQI 101 (112)
T ss_dssp CCCCCTTCEEEETTT------CCEEEEEEEECCSSS--SSCEEEEEESSS-CSSBSSEETTEECSCCCTTTEEEECGGGE
T ss_pred cccCCCCCEEEECCC------CeEEEEEEeeecCCC--CCcEEEEEECCC-CCCCCCEECCEEeeecCCCeEEEEchHHe
Confidence 457999999975421 578998 6655433 367899999998 44332 2 299999999999887
Q ss_pred eec
Q psy14280 1221 INL 1223 (1891)
Q Consensus 1221 LNL 1223 (1891)
--+
T Consensus 102 ~~~ 104 (112)
T 2coy_A 102 QVF 104 (112)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 22
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=44.46 E-value=55 Score=32.30 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=46.7
Q ss_pred CcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
.+.+||||.. .| .-+||| ||-.... ....+-|-||+|- |-++ + .|.+.+|..++.+.|--
T Consensus 1 ~l~vG~rV~V---~g----~~~GtVryvG~~~~~--~G~wvGVelDep~-GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~ 70 (90)
T 2e3h_A 1 ELKIGDRVLV---GG----TKAGVVRFLGETDFA--KGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 70 (90)
T ss_dssp CCCTTCEEEE---TT----TEEEEEEEEEECSSS--SSEEEEEEESSSC-CSBSSEETTEESCCCCTTCEEEEEGGGEEE
T ss_pred CCcCCCEEEE---CC----CCEEEEEEeccCCCC--CCeEEEEEECCCC-CCCCCEECCEEeeecCCCcEEEEcHHHeEE
Confidence 3679999976 22 247998 6665543 3678999999994 4332 2 19999999999998877
Q ss_pred cCccc
Q psy14280 1223 LSYGE 1227 (1891)
Q Consensus 1223 LT~gq 1227 (1891)
+..+.
T Consensus 71 ~~~p~ 75 (90)
T 2e3h_A 71 IGFPS 75 (90)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 76553
No 23
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=39.89 E-value=48 Score=31.39 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=39.3
Q ss_pred CcccCCeEEEEeCCCCccccCceEEEEEecCCCCccceEEEEeecccCCCCccc---------cCCCccccccCcce
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIR---------CSESRGYRMPAQAM 1220 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~~~~d~~vDVLFDepF~GGttL~---------cs~~RG~~Vp~ssL 1220 (1891)
+|.+||||. |. +. -+|||-=|-.+.-.....+-|-+|+|. |.+-+ |.+.+|..++++.|
T Consensus 2 ~~~vG~rv~-v~--g~----~~G~VryvG~~~~~~g~w~GVeld~p~--GkndGsv~G~rYF~c~p~~G~Fv~~~kv 69 (72)
T 3rdv_A 2 DFRVGERVW-VN--GN----KPGFIQFLGETQFAPGQWAGIVLDEPI--GKNDGSVAGVRYFQCEPLKGIFTRPSKL 69 (72)
T ss_dssp CCCTTCEEE-ET--TT----EEEEEEEEECCSSSSSCEEEEEESSSC--SSBSSEETTEESCCCSTTCEEEECGGGE
T ss_pred CcccCCEEE-EC--CC----CEEEEEEeeeCCCCCceEEEEEECCCC--CccCCEECCEEeCccCCCCEEEecHHHc
Confidence 478999985 32 21 267774333332234678999999986 44321 99999999988765
No 24
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=37.82 E-value=68 Score=31.39 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=43.3
Q ss_pred CcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
.+.+||||.. . | .-+||| ||-.... ....+-|-||+| .|-++ + .|.+.+|..|+++.|--
T Consensus 2 ~~~vG~rv~v-~--g----~~~GtVryvG~~~~~--~G~wvGVelDep-~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~ 71 (86)
T 2e3i_A 2 DFRVGERVWV-N--G----NKPGFIQFLGETQFA--PGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71 (86)
T ss_dssp CCCTTCEEEE-T--T----TEEEEEEEEEECSSS--SSEEEEEEESSS-CSSBSSEETTEESSCCSTTCEEEECGGGEES
T ss_pred CccCCCEEEE-C--C----CcEEEEEEeeeCCCC--CCcEEEEEeCCC-CCccCCEECCEEeeecCCCeEEEEcHHHccc
Confidence 4789999975 2 2 247898 6665543 367889999999 44332 2 19999999999987754
Q ss_pred c
Q psy14280 1223 L 1223 (1891)
Q Consensus 1223 L 1223 (1891)
.
T Consensus 72 ~ 72 (86)
T 2e3i_A 72 K 72 (86)
T ss_dssp S
T ss_pred c
Confidence 3
No 25
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=37.70 E-value=1.4e+02 Score=30.10 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEe-ecccCCCCc--c------ccCCCccccccCc
Q psy14280 1150 PDTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVF-DKPFPHGVK--I------RCSESRGYRMPAQ 1218 (1891)
Q Consensus 1150 ~~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLF-DepF~GGtt--L------~cs~~RG~~Vp~s 1218 (1891)
....+.+||||..-. .+ +.+||| ||-+... ....+-|-| |+|- |-++ + .|.+.+|..|+.+
T Consensus 14 ~~~~l~VG~RV~V~~-~~----~~~GtVryvG~v~~~--~G~wvGVEldDep~-GKnDGsv~G~rYF~C~p~~G~FVr~~ 85 (104)
T 1ixd_A 14 NSHGLEVGSLAEVKE-NP----PFYGVIRWIGQPPGL--NEVLAGLELEDECA-GCTDGTFRGTRYFTCALKKALFVKLK 85 (104)
T ss_dssp SSSCCCTTSEEEECS-SS----CCCEEEEEEECCSSS--CCCEEEEEESSCCT-TCBSSEETTEECSCCCTTCBEEEEGG
T ss_pred CCcccccCCEEEECc-CC----CcEEEEEEecccCCC--CceEEEEEecCCCC-CCCCCEECCEEeeecCCCcEEEEcHH
Confidence 355799999997642 22 678888 5655443 356788999 6653 4332 2 2999999999998
Q ss_pred ceee
Q psy14280 1219 AMIN 1222 (1891)
Q Consensus 1219 sLLN 1222 (1891)
.|--
T Consensus 86 ~v~~ 89 (104)
T 1ixd_A 86 SCRP 89 (104)
T ss_dssp GEEE
T ss_pred Hcee
Confidence 8664
No 26
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=36.79 E-value=1.3e+02 Score=30.36 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=46.1
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||.. .| .-+||| ||-+... ....+-|-||+| .|-++ + .|.+.+|..|+++.|
T Consensus 23 ~~~~~VG~RV~V---~g----~~~GtVryvG~v~~~--~G~wvGVElDep-~GKnDGsv~G~rYF~C~p~~GiFvr~~~v 92 (102)
T 1whh_A 23 GAKAEVGDQVLV---AG----QKQGIVRFYGKTDFA--PGYWYGIELDQP-TGKHDGSVFGVRYFTCAPRHGVFAPASRI 92 (102)
T ss_dssp CCSSCTTSEEEE---TT----TEEEEEEEEEECSSS--SSEEEEEECSSS-CCSSSSEETTEECSCCCTTTEEEECGGGE
T ss_pred cccCcCCCEEEE---CC----CcEEEEEEeeecCCC--CCeEEEEEeCCC-CCcCCCEECCEEeeecCCCcEEEecHHHe
Confidence 467999999975 12 247998 5665442 357899999999 44332 2 199999999999987
Q ss_pred eecC
Q psy14280 1221 INLS 1224 (1891)
Q Consensus 1221 LNLT 1224 (1891)
--+.
T Consensus 93 ~~~~ 96 (102)
T 1whh_A 93 QRIG 96 (102)
T ss_dssp EECC
T ss_pred EECC
Confidence 6554
No 27
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=35.63 E-value=77 Score=31.02 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCcccCCeEEEEeCCCCccccCceEEEEEecCC-CCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1152 TKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGE-TSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1152 q~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~-~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
+.+++||||.. ... +.+|||-=|-... -....-+-|-+|+|- |-++ + .|.+.+|..|+++.|--
T Consensus 4 ~~i~vG~Rv~v-~~~-----~~~G~VryvG~v~~~~~G~wvGVelDep~-GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~ 76 (84)
T 4b6m_A 4 ETIHVGDRCLC-RPG-----DRLGSVRFVGRVASLKPGYWVGVEFDEPV-GKGDGTVKGTRVFQCQPNYGGFLRPDQVEV 76 (84)
T ss_dssp -CCCTTCEEEE-TTT-----TEEEEEEEEEECTTSCSSEEEEEEESSSC-CSBSSEETTEESSCCCTTSEEEECGGGEEE
T ss_pred cCcccCCEEEE-cCC-----CeEEEEEEEecCCCCCCCEEEEEEECCCC-CCcCCEECCEEEEecCCCeEEEecHHHeEE
Confidence 46889999964 222 3579985443321 123467899999984 4332 2 19999999999988643
No 28
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=34.85 E-value=78 Score=32.44 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=44.3
Q ss_pred CcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
.+.+||||....... | ..+||| ||-+... ....+-|-||+|- |-++ + .|.+.+|..|+++.|--
T Consensus 32 ~~~VG~RV~V~~~g~--~-~~~GtVryvG~v~~~--~G~wvGVElDep~-GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~ 105 (113)
T 1whg_A 32 AISVGSRCEVRAPDH--S-LRRGTVMYVGLTDFK--PGYWVGVRYDEPL-GKNDGSVNGKRYFECQAKYGAFVKPSAVTV 105 (113)
T ss_dssp TSCSSCEEEECCSSS--S-CEEEEEEEEEECSSS--SSEEEEEEESSSC-CSBBSEETTEECSCCCTTTEEEECGGGEEE
T ss_pred cCCCCCEEEEecCCC--c-ceEEEEEEecccCCC--CCEEEEEEecCCC-CccCCEECCEEEeeeCCCeEEEECHHHeEE
Confidence 467999997643322 2 578888 6665543 3678899999995 4321 2 19999999999887643
No 29
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=34.26 E-value=85 Score=31.21 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=45.8
Q ss_pred CcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
.+.+||||..-.. |. | +.+||| ||-+... ....+-|-+|+|- |-++ + .|.+.+|..|+++.|--
T Consensus 11 ~~~vG~rv~V~~~-g~-~-~~~GtVryvG~~~~~--~G~wvGVElDep~-GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~ 84 (95)
T 1lpl_A 11 NIMVGNRCEVTVG-AQ-M-ARRGEVAYVGATKFK--EGVWVGVKYDEPV-GKNDGSVAGVRYFDCDPKYGGFVRPVDVKV 84 (95)
T ss_dssp TCCTTCEEEECCT-TS-C-CEEEEEEEEECCSSS--SSCEEEEEESSSC-SSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred cCCCCCEEEEccC-CC-C-ceEEEEEEecccCCC--CCEEEEEEccCCC-CccCCEECCEEEeEeCCCEEEEEcHHHceE
Confidence 5789999955422 22 2 688999 6655443 3678999999995 3221 2 19999999999887654
Q ss_pred cCc
Q psy14280 1223 LSY 1225 (1891)
Q Consensus 1223 LT~ 1225 (1891)
-.+
T Consensus 85 gdf 87 (95)
T 1lpl_A 85 GDF 87 (95)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
No 30
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=33.62 E-value=89 Score=34.21 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=48.1
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||.. .| ..+||| ||-.... ....+-|-||+|- |-++ + .|.+.+|..|+...|
T Consensus 36 ~~~l~VG~RV~V---~g----~~~GtVRyvG~v~~~--~G~WvGVELDeP~-GKnDGsv~G~rYF~C~p~~GiFVr~~kV 105 (172)
T 2cp6_A 36 ERELKIGDRVLV---GG----TKAGVVRFLGETDFA--KGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKV 105 (172)
T ss_dssp SSCCCSSCEEEE---TT----TEEEEEEEEEECSSS--SSEEEEEEESSSC-CSBSSEETTEECCCCCTTTEEEEEGGGC
T ss_pred CccCccCCEEEE---CC----CceEEEEEeCcCCCC--CCcEEEEEecCCC-CccCCEECCEEeeeeCCCeEEEechHHe
Confidence 457899999976 22 357888 6665543 3578999999993 3322 1 299999999999988
Q ss_pred eecCccc
Q psy14280 1221 INLSYGE 1227 (1891)
Q Consensus 1221 LNLT~gq 1227 (1891)
--+.++.
T Consensus 106 ~~~dfP~ 112 (172)
T 2cp6_A 106 TKIGFPS 112 (172)
T ss_dssp EECCCSS
T ss_pred EECCcCC
Confidence 7775554
No 31
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=32.73 E-value=1.2e+02 Score=30.49 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=44.7
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||.. . + ..+||| ||-+.. .....+-|-||+| .|-++ + .|.+.+|..|+++.|
T Consensus 21 ~~~l~vG~rV~V-~--g----~~~GtVryvG~~~~--~~G~wvGVElDep-~GKnDGsv~G~rYF~C~p~~GiFvr~~~v 90 (100)
T 2cow_A 21 PEWLREGEFVTV-G--A----HKTGVVRYVGPADF--QEGTWVGVELDLP-SGKNDGSIGGKQYFRCNPGYGLLVRPSRV 90 (100)
T ss_dssp CSSCCTTCEEEC-S--S----SCEEEEEEEECCSS--SSSCEEEEECSSS-CCSCSSEETTEECCCSCTTCCEEECGGGC
T ss_pred CccccCCCEEEE-C--C----CcEEEEEEeeeCCC--CCCeEEEEEeCCC-CCcCCCEECCEEeeecCCCeEEEecHHHe
Confidence 446899999964 2 1 468888 565543 2467889999999 34332 2 199999999998876
Q ss_pred eecC
Q psy14280 1221 INLS 1224 (1891)
Q Consensus 1221 LNLT 1224 (1891)
--.+
T Consensus 91 ~~~~ 94 (100)
T 2cow_A 91 RRAT 94 (100)
T ss_dssp EECC
T ss_pred eECC
Confidence 5543
No 32
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=31.91 E-value=1.1e+02 Score=30.84 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=45.0
Q ss_pred CcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
.+.+||||.. .| .-+||| ||-.... ....+-|-||+| .|-++ + .|.+.+|..|+.+.|.-
T Consensus 24 ~~~vG~RV~V---~g----~~~GtVryvG~v~~~--~G~wvGVElDep-~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~ 93 (102)
T 1whj_A 24 GLKLGDRVVI---AG----QKVGTLRFCGTTEFA--SGQWAGIELDEP-EGKNNGSVGRVQYFKCAPKYGIFAPLSKISK 93 (102)
T ss_dssp TCCTTCEEEE---TT----TEEEEEEEEEECSSS--CSEEEEEEESSS-CCSBSSEETTEECCCCCTTTEEEEEGGGEEE
T ss_pred cCcCCCEEEE---CC----CCEEEEEEeeecCCC--CCeEEEEEeCCC-CCccCCEECCEEecccCCCeEEEEeHHHccc
Confidence 6899999975 22 247898 6665543 367889999999 44332 2 19999999999998766
Q ss_pred cCc
Q psy14280 1223 LSY 1225 (1891)
Q Consensus 1223 LT~ 1225 (1891)
++.
T Consensus 94 ~~~ 96 (102)
T 1whj_A 94 LKD 96 (102)
T ss_dssp SSS
T ss_pred cCC
Confidence 543
No 33
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=28.98 E-value=51 Score=34.11 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCcccCCeEEEEeCCCCccccCceEEEEEecCCCCccceEEEEee
Q psy14280 1152 TKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFD 1196 (1891)
Q Consensus 1152 q~F~LGDRVV~VrdsG~VPfG~kGTVVGI~~~~~~~d~~vDVLFD 1196 (1891)
....+|+||+.=..+|- -.+|+|+++.. ...+.|-||
T Consensus 4 ~~v~vGq~V~akh~ngr---yy~~~V~~~~~-----~~~y~V~F~ 40 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGR---FYQCEVVRLTT-----ETFYEVNFD 40 (118)
T ss_dssp SCCCTTCEEEEECTTSS---EEEEEEEEEEE-----EEEEEEEET
T ss_pred ceeccCCEEEEECCCCC---EEeEEEEEEee-----EEEEEEEcC
Confidence 45789999997666554 34999999974 468899887
No 34
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=28.08 E-value=84 Score=32.66 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=46.4
Q ss_pred CCCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcc
Q psy14280 1150 PDTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQA 1219 (1891)
Q Consensus 1150 ~~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ss 1219 (1891)
....+.+||||.. . + ..+||| ||-+... ....+-|-||+|- |-++ + .|.+.+|..|+++.
T Consensus 28 ~~~~l~VG~RV~V-~--g----~~~GtVRyvG~v~~~--~G~WvGVELDeP~-GKnDGsv~G~rYF~C~p~~GiFVr~~k 97 (122)
T 2coz_A 28 ELFDFHIGDRVLI-G--N----VQPGILRFKGETSFA--KGFWAGVELDKPE-GNNNGTYDGIAYFECKEKHGIFAPPQK 97 (122)
T ss_dssp SCSSCCTTEEEEE-T--T----TEEEEEEEEEECSSS--SSEEEEEEESSTT-SSBCSEETTEECCCCCSSCEEEECGGG
T ss_pred ccccCcCCCEEEE-C--C----CcEEEEEEecccCCC--CCeEEEEEeCCCC-CccCCEECCEEeeecCCCcEEEecHHH
Confidence 4557999999975 2 2 368998 6766543 3678899999995 4332 2 19999999999998
Q ss_pred eeec
Q psy14280 1220 MINL 1223 (1891)
Q Consensus 1220 LLNL 1223 (1891)
|--+
T Consensus 98 v~~~ 101 (122)
T 2coz_A 98 ISHI 101 (122)
T ss_dssp EECC
T ss_pred CccC
Confidence 8644
No 35
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=27.62 E-value=59 Score=32.45 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
...+.+||||... | .-+||| ||-.... ....+-|-||+| .|-++ + .|.+.+|..|+++.|
T Consensus 8 ~~~~~vG~rV~V~---g----~~~GtVryvG~~~~~--~G~wvGVElDep-~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v 77 (96)
T 2z0w_A 8 EGELRLGERVLVV---G----QRLGTIRFFGTTNFA--PGYWYGIELEKP-HGKNDGSVGGVQYFSCSPRYGIFAPPSRV 77 (96)
T ss_dssp ---CCTTCCCCCC---C----CCCEEEEEEECCSSS--SSCEEEEEESSS-CSSBSSEETTEESSCCCTTSEEEECGGGC
T ss_pred cccCCCCCEEEEC---C----CcEEEEEEeccCCCC--CCeEEEEEeCCC-CCCCCCEECCEEeeecCCCeEEEEcHHHc
Confidence 4468899999653 2 257888 5655432 356788999999 44332 2 199999999999987
Q ss_pred eecCcc
Q psy14280 1221 INLSYG 1226 (1891)
Q Consensus 1221 LNLT~g 1226 (1891)
--++..
T Consensus 78 ~~~~~~ 83 (96)
T 2z0w_A 78 QRVTDS 83 (96)
T ss_dssp CCTTC-
T ss_pred eeccch
Confidence 766553
No 36
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=26.42 E-value=2.1e+02 Score=28.56 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=43.6
Q ss_pred CcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcceee
Q psy14280 1153 KFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAMIN 1222 (1891)
Q Consensus 1153 ~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssLLN 1222 (1891)
.+.+||||.. . | .-+||| ||-.... ...-+-|-||+|- |-++ + .|.+.+|..|+.+.|--
T Consensus 16 ~~~vG~RV~V-~--g----~~~GtVryvG~v~~~--~G~wvGVelDep~-GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~ 85 (95)
T 2cp0_A 16 GLRLGDRVLL-D--G----QKTGTLRFCGTTEFA--SGQWVGVELDEPE-GKNDGSVGGVRYFICPPKQGLFASVSKISK 85 (95)
T ss_dssp TCCTTCEEEE-T--T----TEEEEEEEEECCSSS--CSCEEEEEESSSC-CSBCSEETTEECCCCSSSCEEEECGGGEEE
T ss_pred CCCCCCEEEE-C--C----CCeEEEEEecccCCC--CCcEEEEEecCCC-CcCCCEECCEEeeecCCCcEEEEcHHHeec
Confidence 5889999865 2 2 237888 5655432 3678999999994 4332 2 29999999999988765
Q ss_pred cC
Q psy14280 1223 LS 1224 (1891)
Q Consensus 1223 LT 1224 (1891)
..
T Consensus 86 ~~ 87 (95)
T 2cp0_A 86 AV 87 (95)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 37
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=25.98 E-value=1.7e+02 Score=30.49 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHhHhhcccCCCCCceeec-cccceEEEEEeeecCCcceeeeCcccccccchHHHHHHhhhhhhh
Q psy14280 1755 SYLAKLLRLTRAHNLGAPDYTFSM-DASKLYVATVRICHPHSDIVVRGKPCAKKADSVEICARRAFNELT 1823 (1891)
Q Consensus 1755 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1823 (1891)
.|-..|-.++..+.++.|.|...- +-.+.|++.|.|- ....-.|.-|..|-..-..+|+.|+..|.
T Consensus 27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~---g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 27 TPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVA---EQKYQSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEET---TEEEEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEEC---CEEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 467777788889999999997633 6779999999883 22344788766777778889999999885
No 38
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=25.41 E-value=1e+02 Score=30.76 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=43.2
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
-..+.+||||..- + ..+||| ||-+... ....+-|-||+| .|-++ + .|.+.+|..|+++.|
T Consensus 16 ~~~~~vG~rV~V~---g----~~~GtVryvG~v~~~--~G~wvGVElDep-~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv 85 (95)
T 2cp2_A 16 LGDFVVGERVWVN---G----VKPGVVQYLGETQFA--PGQWAGVVLDDP-VGKNDGAVGGVRYFECPALQGIFTRPSKL 85 (95)
T ss_dssp CCSCCTTCEEEGG---G----SCEEEEEEEEECSSS--CSEEEEEEESSS-CSSBBSEETTEECCCCCTTTEEEECGGGC
T ss_pred hhcCcCCCEEEEC---C----ceEEEEEEecccCCC--CCEEEEEEecCC-CCccCCEECCEEecccCCCeEEEEcHHHC
Confidence 4568999999543 1 247888 6665543 367888999999 44332 2 199999999998876
Q ss_pred e
Q psy14280 1221 I 1221 (1891)
Q Consensus 1221 L 1221 (1891)
-
T Consensus 86 ~ 86 (95)
T 2cp2_A 86 T 86 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=24.76 E-value=1.1e+02 Score=32.42 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=43.6
Q ss_pred CCCcccCCeEEEEeCCCCccccCceEE--EEEecCCCCccceEEEEeecccCCCCc--c------ccCCCccccccCcce
Q psy14280 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTI--IGIVQGETSYDAMYDVVFDKPFPHGVK--I------RCSESRGYRMPAQAM 1220 (1891)
Q Consensus 1151 ~q~F~LGDRVV~VrdsG~VPfG~kGTV--VGI~~~~~~~d~~vDVLFDepF~GGtt--L------~cs~~RG~~Vp~ssL 1220 (1891)
-..+.+||||..- | .-+||| ||-.... ....+-|-||+| .|-++ + .|.+.+|..|..+.|
T Consensus 62 ~~~l~VG~RV~V~---G----~~~GtVRyvG~v~~~--~G~WvGVELDeP-~GKnDGsv~G~rYF~C~p~~GiFVrp~kv 131 (141)
T 2cp5_A 62 VDDFRVGERVWVN---G----NKPGFIQFLGETQFA--PGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKL 131 (141)
T ss_dssp CCCCCTTCEEEET---T----SCEEEEEEEEECSSS--SSEEEEEEESSS-CCSCBSEETTEESSCCCTTTEEEECGGGE
T ss_pred hhcCcCCCEEEEC---C----CcEEEEEEeeecCCC--CCcEEEEEeCCC-CCccCCEECCEEeeecCCCcEEEechHHe
Confidence 3468999999652 2 248998 6665543 367899999999 44332 2 299999999998876
Q ss_pred e
Q psy14280 1221 I 1221 (1891)
Q Consensus 1221 L 1221 (1891)
-
T Consensus 132 ~ 132 (141)
T 2cp5_A 132 T 132 (141)
T ss_dssp E
T ss_pred e
Confidence 4
No 40
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=23.41 E-value=1.2e+02 Score=28.01 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHhHhhcccCCCCCceeec---cccceEEEEEeeecCCcceeeeCcccccccchHHHHHHhhhhhhh
Q psy14280 1756 YLAKLLRLTRAHNLGAPDYTFSM---DASKLYVATVRICHPHSDIVVRGKPCAKKADSVEICARRAFNELT 1823 (1891)
Q Consensus 1756 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1823 (1891)
|-..|-.++..+.++.|.|...- |-.+.|++.|+|-- ...-.|.-+..|-+.-..+|+.|+..|.
T Consensus 5 ~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g---~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 5 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDG---VRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETT---EEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECC---EEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 45567778888999999998754 45689999998842 2344677644455567788999988764
No 41
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=23.13 E-value=85 Score=27.91 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=31.5
Q ss_pred ccCCCCEEEEeCCCCCCCcEEEeccccccCcEEEEEEE
Q psy14280 910 IFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFK 947 (1891)
Q Consensus 910 eFPiGSkVffLG~~~YGs~G~Vvg~~~~~~~rlkVsv~ 947 (1891)
.|..|.+|-++..++-|..|+|..+. ..+++++|.+.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~-~~k~~v~V~v~ 40 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEIN-PERGKVKVMVT 40 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEE-TTTTEEEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEc-CCCCEEEEEEE
Confidence 57899999999999999999999975 33568888776
Done!