Your job contains 1 sequence.
>psy14280
MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI
FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE
RLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKG
ERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG
HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKF
NTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLM
GFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLAS
FDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLN
YANYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWN
LHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELL
PEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLT
DEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGL
CQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQVADQ
ILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGY
YTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARE
SLEYKTIDEIFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFKVQQEPDLSDLVHL
QDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEV
VGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGEQRV
AQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVEKQITLFVKPNKLYIPK
PTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFP
HGVKIRCSESRGYRMPAQAMINLSYGERLCGNSNPHVKNINVMQSRGERNTNYAQVTRQP
QRTTFYKENAPLVNSNLQVTSPYHVKVSRCNSQQSSVSQSPSSTMISQQSSPFNVKPTEK
TEPPPPHKLNQVNTSSAPKEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQ
NSELFSTGGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGT
QTITMNDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNGG
RTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPSGGEL
SFEEKHSMAAKSKNETTPTIKTEMRKIISSSDYQGLEEEEEEEVMIIEIKEDLQQQQTVE
PEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQA
AMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNASSQP
VPPDTTEDLEERADSYLAKLLRLTRAHNLGAPDYTFSMDASKLYVATVRICHPHSDIVVR
GKPCAKKADSVEICARRAFNELTQIYPTAPNTKSASDVTRAETKTAVAAQPAPQNTEVDQ
TDKNTAAAAEKKEKKAPRIAAKFKTPLNLKN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14280
(1891 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1C8R7 - symbol:XRN1 "Uncharacterized protein" ... 1858 0. 4
UNIPROTKB|F1SKG4 - symbol:XRN1 "Uncharacterized protein" ... 1818 0. 4
UNIPROTKB|E2R2X2 - symbol:XRN1 "Uncharacterized protein" ... 1814 0. 5
UNIPROTKB|J9PAD8 - symbol:XRN1 "Uncharacterized protein" ... 1814 0. 5
MGI|MGI:891964 - symbol:Xrn1 "5'-3' exoribonuclease 1" sp... 1812 0. 5
UNIPROTKB|Q8IZH2 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 1801 0. 4
UNIPROTKB|E1BMZ8 - symbol:E1BMZ8 "Uncharacterized protein... 2386 6.5e-307 3
ZFIN|ZDB-GENE-040426-1203 - symbol:xrn1 "5'-3' exoribonuc... 2077 3.7e-281 4
RGD|1309713 - symbol:Xrn1 "5'-3' exoribonuclease 1" speci... 1819 9.5e-248 3
FB|FBgn0020261 - symbol:pcm "pacman" species:7227 "Drosop... 1411 1.7e-197 3
UNIPROTKB|F6XNM6 - symbol:XRN1 "Uncharacterized protein" ... 1019 2.8e-181 3
WB|WBGene00012730 - symbol:xrn-1 species:6239 "Caenorhabd... 901 2.7e-177 6
ASPGD|ASPL0000014026 - symbol:AN11052 species:162425 "Eme... 908 1.8e-173 2
POMBASE|SPAC17A5.14 - symbol:exo2 "exonuclease II Exo2" s... 939 2.9e-172 3
SGD|S000003141 - symbol:XRN1 "Evolutionarily-conserved 5'... 837 2.9e-157 3
CGD|CAL0003816 - symbol:RAT1 species:5476 "Candida albica... 643 2.0e-124 4
UNIPROTKB|Q5AMG5 - symbol:RAT1 "5'-3' exoribonuclease 2" ... 643 2.0e-124 4
POMBASE|SPAC26A3.12c - symbol:dhp1 "5'-3' exoribonuclease... 631 1.4e-123 4
DICTYBASE|DDB_G0276137 - symbol:xrn1 "5'-3' exoribonuclea... 774 1.3e-113 6
SGD|S000005574 - symbol:RAT1 "Nuclear 5' to 3' single-str... 622 2.3e-101 3
TAIR|locus:2005614 - symbol:XRN3 "5'-3' exoribonuclease 3... 446 2.4e-97 5
UNIPROTKB|F1MKX7 - symbol:XRN2 "Uncharacterized protein" ... 462 5.2e-96 4
RGD|1310218 - symbol:Xrn2 "5'-3' exoribonuclease 2" speci... 456 5.8e-96 5
MGI|MGI:894687 - symbol:Xrn2 "5'-3' exoribonuclease 2" sp... 456 7.3e-96 5
ZFIN|ZDB-GENE-040426-2874 - symbol:xrn2 "5'-3' exoribonuc... 456 9.6e-96 4
UNIPROTKB|F1SAU5 - symbol:XRN2 "Uncharacterized protein" ... 456 3.1e-95 4
UNIPROTKB|Q9H0D6 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 458 1.3e-94 4
UNIPROTKB|E2RMS9 - symbol:XRN2 "Uncharacterized protein" ... 456 1.6e-94 5
UNIPROTKB|Q5R4L5 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 458 5.2e-94 5
UNIPROTKB|Q5ZIP4 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 459 8.5e-94 4
DICTYBASE|DDB_G0269922 - symbol:xrn2 "CCHC-type zinc fing... 631 3.4e-93 3
FB|FBgn0031868 - symbol:Rat1 species:7227 "Drosophila mel... 557 4.0e-93 4
UNIPROTKB|B4DZC3 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 458 2.6e-92 3
UNIPROTKB|F1PB11 - symbol:XRN2 "Uncharacterized protein" ... 456 1.1e-91 4
WB|WBGene00006964 - symbol:xrn-2 species:6239 "Caenorhabd... 425 1.2e-91 5
UNIPROTKB|Q9U299 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 425 1.2e-91 5
UNIPROTKB|Q60SG7 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 428 3.0e-91 5
TAIR|locus:2020073 - symbol:XRN4 "exoribonuclease 4" spec... 413 5.5e-86 4
GENEDB_PFALCIPARUM|PF11_0074 - symbol:PF11_0074 "exonucle... 302 1.8e-56 4
UNIPROTKB|Q8IIU0 - symbol:PF11_0074 "Exonuclease, putativ... 302 1.8e-56 4
UNIPROTKB|C9JCZ8 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 562 6.2e-53 1
DICTYBASE|DDB_G0289921 - symbol:DDB_G0289921 species:4468... 256 1.9e-50 5
UNIPROTKB|F8WDA0 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 482 2.1e-44 1
DICTYBASE|DDB_G0272997 - symbol:DDB_G0272997 species:4468... 127 0.00016 5
>UNIPROTKB|E1C8R7 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071044
"histone mRNA catabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 CTD:54464 KO:K12618
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AADN02024099 IPI:IPI00596046
RefSeq:XP_422596.3 UniGene:Gga.23111 Ensembl:ENSGALT00000004266
GeneID:424778 KEGG:gga:424778 Uniprot:E1C8R7
Length = 1736
Score = 1858 (659.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 380/813 (46%), Positives = 526/813 (64%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGEILPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ + V LSGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------ITVYLSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KP ++PN RHCLYGLDADLIMLGL THE +F+LLREEV+F K ++ + PEET
Sbjct: 188 EKAKPHHDPNTRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQ---RACAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF +K+ +SF + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSPVKDK--ISFDYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY+ Y +LP L GYINE G+LNLKRFEK+LT+L+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXXXXXXXXXXWR 497
K+G K+ + ++E + KA ++
Sbjct: 363 SKVGNKYLNEAAGIAAEEARNNKQKKRKAQENSLCLAALEKNEDEVVTSKTVLEDEPEDD 422
Query: 498 TNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPH 557
F +EF Q+K YY K+ V+++ L DQAECY++AIQW LHYYY+G SWSWYYP+
Sbjct: 423 DLFETEFRQYKRTYYMTKMGIEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYYPY 482
Query: 558 HYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILE 617
HYAPY+SDI++ S L +++E+G+PF+PF+QLLAVLPAASK+LLP YQ+LM ++SPI+E
Sbjct: 483 HYAPYLSDIRNISELKIQFELGKPFMPFEQLLAVLPAASKDLLPRCYQHLMVSQDSPIIE 542
Query: 618 YYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTY 677
YYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM++ L +EE+ RN H L+Y Y
Sbjct: 543 YYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEEKRRNVHSACLMYWY 602
Query: 678 S-NVNLG-TALAPDYFPAINENHAVEK--PLYRDDIYVHPNKLRKGLCQDVNLK-LYVTH 732
+ T+ P+ FPAI H K PL + + NK+ K +N LY
Sbjct: 603 DKDAEFPYTSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITK-----INKSALYFCG 657
Query: 733 FPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVADQILGKTIFIN 789
FPTLKH++ ++ + V+VFQQ S E++ I+ +K + +++ VA +LGK +F+N
Sbjct: 658 FPTLKHIKHKFYLKKSGVQVFQQSSHGENMMLEILTDEKSKEQTVENVASSVLGKVVFVN 717
Query: 790 YPHLIEIRVQAVATKDSRISFDKNSG-----------PVFERAAKDMQDAFQLSK-KSIT 837
+PHL E RV AV+ +++ ++ G P D + + L + + ++
Sbjct: 718 WPHLEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVTFVGDKEQSMWLKEVQGVS 777
Query: 838 DGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQ 897
+ Y + G+ I T V+VY Q + +Y G+V ++ + + + + YQ+ V +++
Sbjct: 778 EHYQRRKGIIIHETSVVVYAQLLTGNRYQLNQNGQVYLEKQWSKQALPFVYQTVVKDIKA 837
Query: 898 ARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
+T+D++F PG F L +P+YG G
Sbjct: 838 FDSRFSNIRTLDDLFPPGSTAFMLGSPYYGCMG 870
Score = 718 (257.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 150/418 (35%), Positives = 252/418 (60%)
Query: 824 DMQDAFQLSK-KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRS 882
D + + L + + +++ Y + G+ I T V+VY Q + +Y G+V ++ + +
Sbjct: 763 DKEQSMWLKEVQGVSEHYQRRKGIIIHETSVVVYAQLLTGNRYQLNQNGQVYLEKQWSKQ 822
Query: 883 TVTYAYQSAVLNLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEE 938
+ + YQ+ V +++ +R S +T+D++F PG F L +P+YG G V + V E
Sbjct: 823 ALPFVYQTVVKDIKAFDSRFS-NIRTLDDLFPPGSTAFMLGSPYYGCMGEVQDSRDVIPE 881
Query: 939 NSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDST 998
I++ F + EP L L+ Q Y P+Y +AS+L +S L+SRFTGSIFI +
Sbjct: 882 GR-IRVVFSIPCEPQLDRLIQNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGS 940
Query: 999 EE---GAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFG 1055
++ G + N+GLN+KF++KNEEV G+T++ +W Y+ V L+ Y+++ PE+F
Sbjct: 941 KKNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGNEWMYSSAVEQLLAEYLERVPELFS 998
Query: 1056 FLKDHSSDDIYLRDDVFPHQ---GEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
++ +S +DI+ DD++P + G ++V +IV+WLK P + C ++DA +V
Sbjct: 999 YIAKNSQEDIFYEDDIWPGEDENGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEK 1058
Query: 1113 IEHAVDTCE--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVP 1170
IE ++ C+ K K++ + VKP+ LY P + + PD D +++LFDRVVN+R+ ++VP
Sbjct: 1059 IEEEIEKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVP 1118
Query: 1171 LGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
+G RGTIIGI D +++V+FD+ F G+ IRCS +RGYR+P+ A+INLS+G R
Sbjct: 1119 VGLRGTIIGIKGASRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGVR 1176
Score = 561 (202.5 bits), Expect = 0., Sum P(4) = 0.
Identities = 102/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLS+V++E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI+E +I
Sbjct: 1 MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 ILPTEARFD 129
Score = 57 (25.1 bits), Expect = 4.8e-49, Sum P(3) = 4.8e-49
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
+YL P +GE ++ + + K +PH R C + DA ++ L
Sbjct: 166 VYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLYGL-DADLIML 212
Score = 48 (22.0 bits), Expect = 0., Sum P(4) = 0.
Identities = 40/174 (22%), Positives = 69/174 (39%)
Query: 1336 SAPKEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTT---QNSELFSTGGMSF 1392
S P K ++QN N + K++ E + A P T ++SEL S
Sbjct: 1311 SQPHNKI-PNKQNFAGVNKHNVKLLKRNESVPVIQKAASDSPCTSGKKDSELESL----- 1364
Query: 1393 FGYPNLLDIPENKNKLLTGEITA-NKMETKPEKATCPQDKEVEEITNGTQTITMNDLYQS 1451
+L EN+ + + E A N+ P+ + ++EI I +DL ++
Sbjct: 1365 --LASLKISKENEVQTSSKEARATNEEHLSPQSFAMKGTQMLKEILK----IDGSDL-ET 1417
Query: 1452 ANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNGGRTATP 1505
N+ + ++P+ +Q+ A Y T Y N+P GG +TP
Sbjct: 1418 RNEAKSHVNDVPASPG--RQDCHGAALQYRQTKKM--AAYMNNPHSTGGPQSTP 1467
Score = 44 (20.5 bits), Expect = 0., Sum P(4) = 0.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 1642 VTSLIRPQPGPVRGHTNSSDLS 1663
+T++++PQP ++ +SDLS
Sbjct: 1184 LTAIVKPQPAVNNYNSYASDLS 1205
Score = 38 (18.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 1369 FSNATYSIPTTQNSELFSTGGMSFFGYPNLLDIP 1402
+ N +S Q++ TGG F G L P
Sbjct: 1453 YMNNPHSTGGPQSTPALGTGGHPFVGPQPTLSTP 1486
Score = 38 (18.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 16/64 (25%), Positives = 25/64 (39%)
Query: 1519 RSSSNDTEAENTFKR-AISAMVQQSPHLLEKNKELNTPSGGELSFEEKHSMAAKSKNETT 1577
RS E FK + + PH NK P+ + KH++ +NE+
Sbjct: 1288 RSQQRKQEPYKKFKEDSRFTRGESQPH----NK---IPNKQNFAGVNKHNVKLLKRNESV 1340
Query: 1578 PTIK 1581
P I+
Sbjct: 1341 PVIQ 1344
Score = 38 (18.4 bits), Expect = 4.7e-47, Sum P(3) = 4.7e-47
Identities = 24/140 (17%), Positives = 58/140 (41%)
Query: 331 LELEFGKLKEPGVLSFPFSIENIIDDWVLMGFL--IGNDFIPNLPDL--HII-NGALPLL 385
L L+F K E P + + ++W+ + + +++ +P+L +I N +
Sbjct: 954 LNLKFNKKNE----EVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFSYIAKNSQEDIF 1009
Query: 386 YKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFS 445
Y+ ++ P D E G ++ ++ + L + D+Q L+ + +K
Sbjct: 1010 YE--DDIWPGED----ENG---AEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIE 1060
Query: 446 DVFHKEKSKEMDPDLAALIK 465
+ K K ++ + + +K
Sbjct: 1061 EEIEKCKQRKSNKKVRVTVK 1080
Score = 37 (18.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 1331 QVNTSSAPKEKPRTSEQN-QIKSNGNEQKVIINK 1363
Q ++SSAP + P+ ++ + N V NK
Sbjct: 1678 QQDSSSAPLKSPQAAQSTVSFQDNAATPSVPRNK 1711
Score = 37 (18.1 bits), Expect = 5.9e-47, Sum P(3) = 5.9e-47
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 1042 LIKNYMKQFPEVFGFLKDH 1060
L + YM PE+ G++ ++
Sbjct: 310 LYRTYMAILPELGGYINEN 328
>UNIPROTKB|F1SKG4 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:CU914452 EMBL:CU467674 Ensembl:ENSSSCT00000012784
ArrayExpress:F1SKG4 Uniprot:F1SKG4
Length = 1725
Score = 1818 (645.0 bits), Expect = 0., Sum P(4) = 0.
Identities = 383/824 (46%), Positives = 522/824 (63%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF LK+ ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSALKDK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVF----------HKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXX 487
K+G K+ + +KEK K + + A D + ++
Sbjct: 363 SKVGNKYLNEAAGVAAEEAKNYKEKKKTKGQENSVCWAALDKNGEEVVTSKDNLEDETED 422
Query: 488 XXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
F +EF Q+K YY K+ V+++ L DQA CY++AIQW LHYYY+G
Sbjct: 423 DDL---------FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHG 473
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
SWSW+YP+HYAP++SDI++ S L + +E+G+PF PF+QLLAVLPAASK LLP YQ+L
Sbjct: 474 VQSWSWFYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHL 533
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
MT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L EER RN
Sbjct: 534 MTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Query: 668 RHGPMLVYTYSNVNLGTALAP--DYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQD 723
+H L+ Y T +P + FPAI H + + D + + NK+ +
Sbjct: 594 QHSECLMCWYDGDTEFTYPSPWPEKFPAIERCHTRYRIISLDAWRVDISKNKITR----- 648
Query: 724 VNLK-LYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVAD 779
V+ K LY FPTLKH++ ++ + V+VFQQ SR E++ I+V + S++ +A
Sbjct: 649 VDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIAS 708
Query: 780 QILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSG----------P---VFERAAKDMQ 826
+LGK++F+N+PHL E RV ++ +++ ++ G P V K+ Q
Sbjct: 709 SVLGKSVFVNWPHLEEARVVGISDGETKFYLEEPPGTQKLYLGRTVPPSKVVHLGDKE-Q 767
Query: 827 DAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTY 886
+ + I++ Y + G+ I T +VYGQ + RKY G+V ++ + + + +
Sbjct: 768 SNWTKEVQGISEYYLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPF 827
Query: 887 AYQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
YQ+ V +++ KT+D++F P F L P+YG G
Sbjct: 828 VYQTIVKDVRAFDSRFSSIKTLDDLFPPRSMVFMLGTPYYGCTG 871
Score = 724 (259.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 150/407 (36%), Positives = 241/407 (59%)
Query: 834 KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
+ I++ Y + G+ I T +VYGQ + RKY G+V ++ + + + + YQ+ V
Sbjct: 775 QGISEYYLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVK 834
Query: 894 NLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEENSFIKLSFKVQ 949
+++ +R S KT+D++F P F L P+YG G V + V E I++ F +
Sbjct: 835 DVRAFDSRFS-SIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGR-IRVVFSIP 892
Query: 950 QEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE---GAKRHN 1006
EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI + G + N
Sbjct: 893 CEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKAN 952
Query: 1007 IGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIY 1066
+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F ++ +S +D++
Sbjct: 953 VGLNLKFNKKNEEVPGYTKK--VGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVF 1010
Query: 1067 LRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCE-- 1121
DD++P + E ++V +I++WLK P + C ++DA +V IE V+ C+
Sbjct: 1011 YEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQR 1070
Query: 1122 KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIV 1181
K K++ + VKP+ LY P + PD D +F+LFDRVVN+R+ ++VP+G RGTIIGI
Sbjct: 1071 KNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPIGLRGTIIGIK 1130
Query: 1182 QGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R
Sbjct: 1131 GANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR 1177
Score = 565 (203.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 50 (22.7 bits), Expect = 0., Sum P(4) = 0.
Identities = 32/171 (18%), Positives = 66/171 (38%)
Query: 1333 NTSSAPKEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQNSELF--STGGM 1390
N+ K +P + + KS E + + +A +I + +E S
Sbjct: 1278 NSVKQRKHEPHKKFKEECKSPKTESRSQKMSNRQTFAGHAKCNIKLLKRNESAEASENQK 1337
Query: 1391 SFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQTITMNDLYQ 1450
+ GYPN +D P + + K E + + + + E ++ + + + +
Sbjct: 1338 AVMGYPNAIDKPNPGIENFLASLNIAK-ENEVQLSHHEEPPNEEHLSPQSFAMKGTRMLK 1396
Query: 1451 SANKRSENGFNIPSISDLIKQ--NNITAKT----DYPTTSTFPEVKYTNSP 1495
K +G + S++ KQ N +T + +Y ++S + YTN P
Sbjct: 1397 EILKIDGSG-TLDHKSEM-KQFGNEVTVSSNRRDEYGSSSQPKQTSYTNKP 1445
Score = 45 (20.9 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 41 (19.5 bits), Expect = 5.0e-48, Sum P(3) = 5.0e-48
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDL 460
NE G ++ ++ +T L D+Q L+ + +K + K K ++ + +
Sbjct: 1020 NENG---AEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKV 1076
Query: 461 AALIK 465
+K
Sbjct: 1077 RVTVK 1081
Score = 41 (19.5 bits), Expect = 4.4e-47, Sum P(3) = 4.4e-47
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 566 IKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLM 608
++ L + + + P P AV P + P+P N+M
Sbjct: 1534 LQQLGSLGVNFPLPPPIFPSYPP-AVPPGTIPPVFPQPTANIM 1575
Score = 40 (19.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 1642 VTSLIRPQPGPVRGHTNSSDLS 1663
+T++++PQP V ++++S +S
Sbjct: 1185 LTAIVKPQPA-VNHYSSNSSVS 1205
Score = 39 (18.8 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 227 SLWVWKDVCVILSGHETPGEGEH 249
SL + K+ V LS HE P EH
Sbjct: 1359 SLNIAKENEVQLSHHEEPPNEEH 1381
>UNIPROTKB|E2R2X2 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 Ensembl:ENSCAFT00000012512
Uniprot:E2R2X2
Length = 1729
Score = 1814 (643.6 bits), Expect = 0., Sum P(5) = 0.
Identities = 384/823 (46%), Positives = 519/823 (63%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF +LK ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSELKAK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVF----------HKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXX 487
K+G K+ + +KEK K + A A D + ++
Sbjct: 363 SKVGNKYLNEAAGVAAEEARNYKEKKKSKGQENAICWAALDKNGEEVVTSKDNLEDETED 422
Query: 488 XXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
F +EF Q+K YY K+ V+++ L DQA CY++AIQW LHYYY+G
Sbjct: 423 DDL---------FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHG 473
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
SWSWYYP+HYAP++SDI++ S L + +E+G+PF PF+QLLAVLPAASK LLP YQ+L
Sbjct: 474 VQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHL 533
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
MT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+A H L EER RN
Sbjct: 534 MTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRN 593
Query: 668 RHGPMLVYTYSNVNLGTALAP--DYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQD 723
+H L+ Y T +P + FPAI K + D + + NK+ +
Sbjct: 594 QHSECLMCWYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITR----- 648
Query: 724 VNLK-LYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVAD 779
V+ K LY FPTLKH++ ++ + V+VFQQ SR E++ I+V + +++ +A
Sbjct: 649 VDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELNVENIAS 708
Query: 780 QILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP---VFERAAKDM---------QD 827
+LGK++F+N+PHL E RV V+ +++ ++ G R A Q
Sbjct: 709 SVLGKSVFVNWPHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQS 768
Query: 828 AFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYA 887
+ + I++ Y + G+ I T +VY Q + RKY G+V ++ + + + +
Sbjct: 769 NWTKEVQGISEYYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFV 828
Query: 888 YQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
YQ+ V +++ KT+D++F P F L P+YG G
Sbjct: 829 YQTIVKDIRAFDSRFSNIKTLDDLFPPRSMVFMLGTPYYGCTG 871
Score = 700 (251.5 bits), Expect = 0., Sum P(5) = 0.
Identities = 148/410 (36%), Positives = 239/410 (58%)
Query: 834 KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
+ I++ Y + G+ I T +VY Q + RKY G+V ++ + + + + YQ+ V
Sbjct: 775 QGISEYYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVK 834
Query: 894 NLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEENSFIKLSFKVQ 949
+++ +R S KT+D++F P F L P+YG G V + V E I++ F +
Sbjct: 835 DIRAFDSRFS-NIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGR-IRVVFSIP 892
Query: 950 QEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE---GAKRHN 1006
EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI + G + N
Sbjct: 893 CEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKAN 952
Query: 1007 IGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQF---PEVFGFLKDHSSD 1063
+GLN+KF++KNEEV G+T++ +W Y+ L+ Y++ PE+F ++ +S +
Sbjct: 953 VGLNLKFNKKNEEVPGYTKK--VGSEWMYSSAAEQLLAEYLESLARAPELFSYIAKNSQE 1010
Query: 1064 DIYLRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTC 1120
D++ DD++P + E ++V +I++WLK P + C ++DA +V IE V+ C
Sbjct: 1011 DVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKC 1070
Query: 1121 E--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTII 1178
+ K K++ + VKP+ LY P + PD D +F+LFDRVVN+R+ ++VP+G RGTII
Sbjct: 1071 KQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTII 1130
Query: 1179 GIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
GI D +++V+FD+ FP G+ IRCS RGYR+P A++NL++G R
Sbjct: 1131 GIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTCALVNLTHGSR 1180
Score = 566 (204.3 bits), Expect = 0., Sum P(5) = 0.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 45 (20.9 bits), Expect = 0., Sum P(5) = 0.
Identities = 31/165 (18%), Positives = 61/165 (36%)
Query: 1339 KEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQNSEL--FSTGGMSFFGYP 1396
K +P + + KS E ++ ++ I A +I + +E S GYP
Sbjct: 1289 KHEPHRKFKEECKSPKTETRLQKISNKQTIGGPAKCNIKLLKRNESAEVSENQKVVTGYP 1348
Query: 1397 NLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQTITMNDLYQSANKRS 1456
N +D P N + + + + + E + +++ E Q+ M
Sbjct: 1349 NAIDKP---NPGIENFLASLNISRENEIQSSHREEPPSEELLSPQSFAMKGTRMLKEILK 1405
Query: 1457 ENGFNIPSISDLIKQ--NNITAKT----DYPTTSTFPEVKYTNSP 1495
+G + + +KQ N +T + +Y +S + Y N P
Sbjct: 1406 IDGSDAVDHKNEMKQFGNEVTVSSNRRDEYEPSSQPKQTSYMNKP 1450
Score = 45 (20.9 bits), Expect = 7.5e-47, Sum P(4) = 7.5e-47
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 43 (20.2 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 654 AVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEK 702
A E LL + S R + Y N D +P NEN A EK
Sbjct: 982 AAEQLLAEYLESLARAPELFSYIAKNSQEDVFYEDDIWPGENENGA-EK 1029
Score = 41 (19.5 bits), Expect = 1.9e-46, Sum P(4) = 1.9e-46
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDL 460
NE G ++ ++ +T L D+Q L+ + +K + K K ++ + +
Sbjct: 1023 NENG---AEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKV 1079
Query: 461 AALIK 465
+K
Sbjct: 1080 RVTVK 1084
Score = 38 (18.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 1642 VTSLIRPQPGPVRGHTNSS 1660
+T++++PQP +NSS
Sbjct: 1188 LTAIVKPQPAVNHYGSNSS 1206
Score = 38 (18.4 bits), Expect = 0., Sum P(5) = 0.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 1632 PDQLAQPGD-DVTSLIRPQPGPVRGHTNSSDLSRSTNAQP 1670
P Q +QPG +VT +I PQ ++S+ L S QP
Sbjct: 1653 PLQTSQPGSSNVTKVI-PQ------ESSSASLKSSQITQP 1685
>UNIPROTKB|J9PAD8 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AAEX03013647
Ensembl:ENSCAFT00000047807 Uniprot:J9PAD8
Length = 1730
Score = 1814 (643.6 bits), Expect = 0., Sum P(5) = 0.
Identities = 384/823 (46%), Positives = 519/823 (63%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF +LK ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSELKAK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVF----------HKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXX 487
K+G K+ + +KEK K + A A D + ++
Sbjct: 363 SKVGNKYLNEAAGVAAEEARNYKEKKKSKGQENAICWAALDKNGEEVVTSKDNLEDETED 422
Query: 488 XXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
F +EF Q+K YY K+ V+++ L DQA CY++AIQW LHYYY+G
Sbjct: 423 DDL---------FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHG 473
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
SWSWYYP+HYAP++SDI++ S L + +E+G+PF PF+QLLAVLPAASK LLP YQ+L
Sbjct: 474 VQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHL 533
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
MT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+A H L EER RN
Sbjct: 534 MTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRN 593
Query: 668 RHGPMLVYTYSNVNLGTALAP--DYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQD 723
+H L+ Y T +P + FPAI K + D + + NK+ +
Sbjct: 594 QHSECLMCWYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITR----- 648
Query: 724 VNLK-LYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVAD 779
V+ K LY FPTLKH++ ++ + V+VFQQ SR E++ I+V + +++ +A
Sbjct: 649 VDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELNVENIAS 708
Query: 780 QILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP---VFERAAKDM---------QD 827
+LGK++F+N+PHL E RV V+ +++ ++ G R A Q
Sbjct: 709 SVLGKSVFVNWPHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQS 768
Query: 828 AFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYA 887
+ + I++ Y + G+ I T +VY Q + RKY G+V ++ + + + +
Sbjct: 769 NWTKEVQGISEYYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFV 828
Query: 888 YQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
YQ+ V +++ KT+D++F P F L P+YG G
Sbjct: 829 YQTIVKDIRAFDSRFSNIKTLDDLFPPRSMVFMLGTPYYGCTG 871
Score = 712 (255.7 bits), Expect = 0., Sum P(5) = 0.
Identities = 148/407 (36%), Positives = 240/407 (58%)
Query: 834 KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
+ I++ Y + G+ I T +VY Q + RKY G+V ++ + + + + YQ+ V
Sbjct: 775 QGISEYYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVK 834
Query: 894 NLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEENSFIKLSFKVQ 949
+++ +R S KT+D++F P F L P+YG G V + V E I++ F +
Sbjct: 835 DIRAFDSRFS-NIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGR-IRVVFSIP 892
Query: 950 QEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE---GAKRHN 1006
EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI + G + N
Sbjct: 893 CEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKAN 952
Query: 1007 IGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIY 1066
+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F ++ +S +D++
Sbjct: 953 VGLNLKFNKKNEEVPGYTKK--VGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVF 1010
Query: 1067 LRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCE-- 1121
DD++P + E ++V +I++WLK P + C ++DA +V IE V+ C+
Sbjct: 1011 YEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQR 1070
Query: 1122 KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIV 1181
K K++ + VKP+ LY P + PD D +F+LFDRVVN+R+ ++VP+G RGTIIGI
Sbjct: 1071 KNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIK 1130
Query: 1182 QGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
D +++V+FD+ FP G+ IRCS RGYR+P A++NL++G R
Sbjct: 1131 GANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTCALVNLTHGSR 1177
Score = 566 (204.3 bits), Expect = 0., Sum P(5) = 0.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 45 (20.9 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 43 (20.2 bits), Expect = 0., Sum P(5) = 0.
Identities = 26/102 (25%), Positives = 40/102 (39%)
Query: 1339 KEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQNSEL--FSTGGMSFFGYP 1396
K +P + + KS E ++ ++ I A +I + +E S GYP
Sbjct: 1286 KHEPHRKFKEECKSPKTETRLQKISNKQTIGGPAKCNIKLLKRNESAEVSENQKVVTGYP 1345
Query: 1397 NLLDIP----EN----KNKLLTGEITANKMETKP-EKATCPQ 1429
N +D P EN N EI ++ E P E+ PQ
Sbjct: 1346 NAIDKPNPGIENFLASLNISRENEIQSSHREEPPSEELLSPQ 1387
Score = 41 (19.5 bits), Expect = 3.1e-46, Sum P(4) = 3.1e-46
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDL 460
NE G ++ ++ +T L D+Q L+ + +K + K K ++ + +
Sbjct: 1020 NENG---AEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKV 1076
Query: 461 AALIK 465
+K
Sbjct: 1077 RVTVK 1081
Score = 38 (18.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 1642 VTSLIRPQPGPVRGHTNSS 1660
+T++++PQP +NSS
Sbjct: 1185 LTAIVKPQPAVNHYGSNSS 1203
Score = 38 (18.4 bits), Expect = 0., Sum P(5) = 0.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 1632 PDQLAQPGD-DVTSLIRPQPGPVRGHTNSSDLSRSTNAQP 1670
P Q +QPG +VT +I PQ ++S+ L S QP
Sbjct: 1654 PLQTSQPGSSNVTKVI-PQ------ESSSASLKSSQITQP 1686
>MGI|MGI:891964 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10090 "Mus
musculus" [GO:0000723 "telomere maintenance" evidence=NAS]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0007126 "meiosis" evidence=NAS]
[GO:0007569 "cell aging" evidence=NAS] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 MGI:MGI:891964 GO:GO:0007126 GO:GO:0003677
GO:GO:0003723 GO:GO:0006396 GO:GO:0000932 GO:GO:0000723
GO:GO:0071044 GO:GO:0007569 CTD:54464 eggNOG:COG5049
HOVERGEN:HBG094164 KO:K12618 OrthoDB:EOG49S65H InterPro:IPR027073
PANTHER:PTHR12341 EMBL:D88026 EMBL:X91617 EMBL:AK142311
EMBL:AK162848 EMBL:AK169840 IPI:IPI00129132 IPI:IPI00668938
IPI:IPI00677614 PIR:T30174 PIR:T30175 PIR:T30244 RefSeq:NP_036046.2
UniGene:Mm.291179 ProteinModelPortal:P97789 SMR:P97789
STRING:P97789 PhosphoSite:P97789 PaxDb:P97789 PRIDE:P97789
GeneID:24127 KEGG:mmu:24127 UCSC:uc009rbw.1 UCSC:uc009rbx.1
HOGENOM:HOG000154879 InParanoid:P97789 NextBio:304159
CleanEx:MM_XRN1 Genevestigator:P97789 GermOnline:ENSMUSG00000032410
GO:GO:0004534 Uniprot:P97789
Length = 1719
Score = 1812 (642.9 bits), Expect = 0., Sum P(5) = 0.
Identities = 383/823 (46%), Positives = 516/823 (62%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSALKEK--ITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFE++L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVFH----------KEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXX 487
K+G K+ + KEK K + + A D +G
Sbjct: 363 SKVGNKYLNEAAGAAAEEAKNCKEKRKPKGQENSLSWAALDKSEGEGVASRDNFEDETED 422
Query: 488 XXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
F +EF Q+K YY K+ V++E L +QA CY++AIQW LHYYY+G
Sbjct: 423 DDL---------FETEFRQYKRTYYMTKMGVDVVSDEFLANQAACYVQAIQWILHYYYHG 473
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
SWSWYYP+HYAP++SDI+ S L + +E+G+PF PF+QLLAVLP+ASK LLP YQ+L
Sbjct: 474 VQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQHL 533
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
MT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L EER RN
Sbjct: 534 MTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERKRN 593
Query: 668 RHGPMLVYTYSNVNLGTALAP--DYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQD 723
+H L+ Y T +P + FPAI K + D + ++ NK+ +
Sbjct: 594 QHSECLMCWYDRDTEFTYSSPWPEKFPAIERCCTRYKMISLDAWRVDINKNKITR----- 648
Query: 724 VNLK-LYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII-VQDKVQVPSLK--QVAD 779
V+ K LY FPTLKH++ ++ + V+VFQQ SR E++++ + + L+ +A
Sbjct: 649 VDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENLMLEISVNAEPDELRIENIAS 708
Query: 780 QILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP--VFERAAKDMQDAFQLSKKS-- 835
+LGK +F+N+PHL E RV AV+ +++ ++ G V+ QL+ K
Sbjct: 709 AVLGKAVFVNWPHLEEARVVAVSDGETKFYIEEPPGTQKVYLGKTAPPSKVIQLTDKEQS 768
Query: 836 --------ITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYA 887
I++ Y + G+ I T +VY Q + RKY G+V ++ + + + +
Sbjct: 769 NWTKEIQGISEQYLRRKGIIINETSAVVYAQLLTGRKYQISQNGEVRLEKQWSKQILPFV 828
Query: 888 YQSAVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
YQ+ V +++ KT+D++F P F L P+YG G
Sbjct: 829 YQTIVKDIRAFDSRFSNIKTLDDLFPPRTMVFMLGTPYYGCTG 871
Score = 713 (256.0 bits), Expect = 0., Sum P(5) = 0.
Identities = 147/414 (35%), Positives = 241/414 (58%)
Query: 834 KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
+ I++ Y + G+ I T +VY Q + RKY G+V ++ + + + + YQ+ V
Sbjct: 775 QGISEQYLRRKGIIINETSAVVYAQLLTGRKYQISQNGEVRLEKQWSKQILPFVYQTIVK 834
Query: 894 NLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST---VKEENSFIKLSFKV 948
+++ +R S KT+D++F P F L P+YG G V + + E I++ F +
Sbjct: 835 DIRAFDSRFS-NIKTLDDLFPPRTMVFMLGTPYYGCTGEVQDSGDLITEGR--IRVVFSI 891
Query: 949 QQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE---GAKRH 1005
EP+L L+ Q Y P Y +A +L +S L+SRFTGSIFI + G +
Sbjct: 892 PCEPNLDALIQNQHKYSIKYNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKA 951
Query: 1006 NIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDI 1065
N+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F ++ +S +D+
Sbjct: 952 NVGLNLKFNKKNEEVPGYTKK--VGNEWMYSSAAEQLLAEYIERAPELFSYIAKNSQEDV 1009
Query: 1066 YLRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCE- 1121
+ DD++P + E ++V +I++WLK P + C ++DA +V IE V+ C+
Sbjct: 1010 FYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLHILDAAIVEKIEEEVEKCKQ 1069
Query: 1122 -KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGI 1180
K K++ + VKP+ +Y P + PD D +F+LFDRVVN+R+ ++VP+G RGT+IGI
Sbjct: 1070 RKSNKKVRVTVKPHLMYRPLEQQHGVIPDRDAEFRLFDRVVNVRESFSVPVGLRGTVIGI 1129
Query: 1181 VQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGERLCGNSN 1234
D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R C N
Sbjct: 1130 KGASREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR-CETGN 1182
Score = 565 (203.9 bits), Expect = 0., Sum P(5) = 0.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 45 (20.9 bits), Expect = 2.4e-46, Sum P(4) = 2.4e-46
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 40 (19.1 bits), Expect = 0., Sum P(5) = 0.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1340 EKPRTSE-QNQIKSNGNEQKVIINKEER 1366
+ P T + +N +K + NE V ++ER
Sbjct: 1401 DSPDTRDSKNDMKKSDNEATVSSRRDER 1428
Score = 39 (18.8 bits), Expect = 0., Sum P(5) = 0.
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 1623 QNKQAFPPH--PDQLAQPGDDVTSLIRPQPGPVRGHTNS 1659
+NK+A P Q +PG + + PQ P ++S
Sbjct: 1634 ENKEAQSSQATPLQTNKPGSSEATKMTPQESPPASSSSS 1672
Score = 37 (18.1 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 7 FRYIS---ERYPCLSEVVREYQIPEFDNLYLDMN 37
F Y S E++P + Y++ D +D+N
Sbjct: 609 FTYSSPWPEKFPAIERCCTRYKMISLDAWRVDIN 642
>UNIPROTKB|Q8IZH2 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005829
GO:GO:0005886 GO:GO:0005794 GO:GO:0010467 GO:GO:0003677
GO:GO:0003723 GO:GO:0045111 GO:GO:0090305 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0043928 GO:GO:0071028
ChiTaRS:XRN1 EMBL:AY137776 EMBL:AL133623 EMBL:BX640905
EMBL:CR627396 EMBL:CR749518 EMBL:BC039314 EMBL:BC048104
EMBL:AK096177 IPI:IPI00328115 IPI:IPI00657645 IPI:IPI00657805
PIR:T43461 RefSeq:NP_001036069.1 RefSeq:NP_061874.3
UniGene:Hs.435103 ProteinModelPortal:Q8IZH2 SMR:Q8IZH2
IntAct:Q8IZH2 STRING:Q8IZH2 PhosphoSite:Q8IZH2 DMDM:74714582
PaxDb:Q8IZH2 PRIDE:Q8IZH2 DNASU:54464 Ensembl:ENST00000264951
Ensembl:ENST00000392981 Ensembl:ENST00000463916 GeneID:54464
KEGG:hsa:54464 UCSC:uc003eus.3 UCSC:uc003euu.3 UCSC:uc003euw.3
CTD:54464 GeneCards:GC03M142025 HGNC:HGNC:30654 HPA:HPA035005
HPA:HPA035006 MIM:607994 neXtProt:NX_Q8IZH2 PharmGKB:PA134878471
eggNOG:COG5049 HOVERGEN:HBG094164 InParanoid:Q8IZH2 KO:K12618
OMA:CKQRKSN OrthoDB:EOG49S65H PhylomeDB:Q8IZH2 GenomeRNAi:54464
NextBio:56731 ArrayExpress:Q8IZH2 Bgee:Q8IZH2 CleanEx:HS_XRN1
Genevestigator:Q8IZH2 GermOnline:ENSG00000114127 InterPro:IPR027073
PANTHER:PTHR12341 Uniprot:Q8IZH2
Length = 1706
Score = 1801 (639.0 bits), Expect = 0., Sum P(4) = 0.
Identities = 383/820 (46%), Positives = 513/820 (62%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSVLKEK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVF----------HKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXX 487
K+G K+ + +KEK K + + A D + +G
Sbjct: 363 SKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKN--EGEMITSKDNLEDET 420
Query: 488 XXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
F +EF Q+K YY K+ V+++ L DQA CY++AIQW LHYYY+G
Sbjct: 421 EDDDL-------FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHG 473
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
SWSWYYP+HYAP++SDI + S L + +E+G+PF PF+QLLAVLPAASK LLP YQ+L
Sbjct: 474 VQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHL 533
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
MT E+SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L EER RN
Sbjct: 534 MTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Query: 668 RHGPMLVYTYSNVN--LGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVN 725
+H L+ Y + + P+ FPAI K + D V NK + + +
Sbjct: 594 QHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNK--ITRIDQ 651
Query: 726 LKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVADQIL 782
LY FPTLKH++ ++ + V+VFQQ SR E++ I+V + +++ VA +L
Sbjct: 652 KALYFCGFPTLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVL 711
Query: 783 GKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP--VFERAAKDMQDAFQLSKKS----- 835
GK++F+N+PHL E RV AV+ +++ ++ G ++ L K
Sbjct: 712 GKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWA 771
Query: 836 -----ITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQS 890
I++ Y + G+ I T +VY Q + RKY G+V ++ + + V + YQ+
Sbjct: 772 KEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQT 831
Query: 891 AVLNLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
V +++ KT+D++F F L P+YG G
Sbjct: 832 IVKDIRAFDSRFSNIKTLDDLFPLRSMVFMLGTPYYGCTG 871
Score = 707 (253.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 149/407 (36%), Positives = 238/407 (58%)
Query: 834 KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
+ I++ Y + G+ I T +VY Q + RKY G+V ++ + + V + YQ+ V
Sbjct: 775 QGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVK 834
Query: 894 NLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEENSFIKLSFKVQ 949
+++ +R S KT+D++F F L P+YG G V + V E I++ F +
Sbjct: 835 DIRAFDSRFS-NIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGR-IRVIFSIP 892
Query: 950 QEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE---GAKRHN 1006
EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI + G + N
Sbjct: 893 CEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKAN 952
Query: 1007 IGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIY 1066
+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F ++ +S +D++
Sbjct: 953 VGLNLKFNKKNEEVPGYTKK--VGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVF 1010
Query: 1067 LRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCE-- 1121
DD++P + E ++V +I++WLK P + C ++DA +V IE V+ C+
Sbjct: 1011 YEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQR 1070
Query: 1122 KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIV 1181
K K++ + VKP+ LY P + PD D +F LFDRVVN+R+ ++VP+G RGTIIGI
Sbjct: 1071 KNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIK 1130
Query: 1182 QGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R
Sbjct: 1131 GANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR 1177
Score = 565 (203.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 49 (22.3 bits), Expect = 0., Sum P(4) = 0.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 1642 VTSLIRPQPGPVRGHTNSSDLS 1663
+T++++PQP V H++SS +S
Sbjct: 1185 LTAIVKPQPA-VHQHSSSSSVS 1205
Score = 45 (20.9 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 41 (19.5 bits), Expect = 6.0e-48, Sum P(3) = 6.0e-48
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDL 460
NE G ++ ++ +T L D+Q L+ + +K + K K ++ + +
Sbjct: 1020 NENG---AEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKV 1076
Query: 461 AALIK 465
+K
Sbjct: 1077 RVTVK 1081
Score = 39 (18.8 bits), Expect = 3.7e-63, Sum P(3) = 3.7e-63
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 12 ERYPCLSEVVREYQIPEFDNLYLDMN 37
E++P + Y+I D +D+N
Sbjct: 617 EKFPAIERCCTRYKIISLDAWRVDIN 642
>UNIPROTKB|E1BMZ8 [details] [associations]
symbol:E1BMZ8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:DAAA02002875 EMBL:DAAA02002876 EMBL:DAAA02002877
IPI:IPI00689341 Ensembl:ENSBTAT00000015318 Uniprot:E1BMZ8
Length = 1723
Score = 2386 (845.0 bits), Expect = 6.5e-307, Sum P(3) = 6.5e-307
Identities = 503/1133 (44%), Positives = 710/1133 (62%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LP E RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKAIEKGETLPAEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF LK+ ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSALKDK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVF----------HKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXX 487
K+G K+ + +KEK K + + A D + ++
Sbjct: 363 SKVGNKYLNEAAGVAAEEAKSYKEKKKSKGQENSICWAALDKNGEEVVTSKDNVEEEMED 422
Query: 488 XXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
F +EF Q+K YY K+ V+++ L DQA CY++AIQW LHYYY+G
Sbjct: 423 DDL---------FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHG 473
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNL 607
SWSW+YP+HYAP++SDI++ S L + +E+G+PF PF+QLLAVLPAASK LLP YQ+L
Sbjct: 474 VQSWSWFYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHL 533
Query: 608 MTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
MT ++SPI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L EER RN
Sbjct: 534 MTSDDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Query: 668 RHGPMLVYTY-SNVNLGTALA-PDYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQD 723
+H L+ + SN P+ FP + A K + D I + N + K
Sbjct: 594 QHSECLMCWFDSNTEFTYPSPWPEKFPPVERCCARYKIISLDAWRIDISKNNITK----- 648
Query: 724 VNLK-LYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVAD 779
V+ K LY FPTLKH++ ++ + V+VFQQ SR E++ I+V + S++ +A
Sbjct: 649 VDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIAS 708
Query: 780 QILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGP---VFERAAKDMQ-----DAFQL 831
+LGK++F+N+PHL E RV V+ +++ ++ G R A + D Q
Sbjct: 709 SVLGKSVFVNWPHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQC 768
Query: 832 S----KKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYA 887
+ + I++ Y + G+ I T +VYGQ + RKY G+V ++ + + + +
Sbjct: 769 NWTKEVQGISEYYLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPFV 828
Query: 888 YQSAVLNLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEENSFIK 943
YQ+ V +++ +R S KT+D++F P F L P+YG G V + V E I+
Sbjct: 829 YQTIVKDIRAFDSRFS-SIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGR-IR 886
Query: 944 LSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE--- 1000
+ F + EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI +
Sbjct: 887 VVFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Query: 1001 GAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDH 1060
G + N+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F ++ +
Sbjct: 947 GDHKANVGLNLKFNKKNEEVPGYTKK--VGNEWMYSSAAEQLLAEYLERAPELFSYIAKN 1004
Query: 1061 SSDDIYLRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAV 1117
S +D++ DD++P + E ++V +I++WLK P + C ++DA +V IE +
Sbjct: 1005 SQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEI 1064
Query: 1118 DTCE--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRG 1175
+ C+ K K++ + VKP+ LY P + PD D +F+LFDRVVN+R+ ++VP+G RG
Sbjct: 1065 EKCKQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRG 1124
Query: 1176 TIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
TIIGI D +++V+FD+ FP G+ IRCS RGYR+P A++NLS+G R
Sbjct: 1125 TIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSR 1177
Score = 561 (202.5 bits), Expect = 6.5e-307, Sum P(3) = 6.5e-307
Identities = 102/129 (79%), Positives = 118/129 (91%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LP E RFD
Sbjct: 121 TLPAEARFD 129
Score = 42 (19.8 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 566 IKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLM 608
I+ L + + + P P AV P + P+P N+M
Sbjct: 1533 IQQLGSLGVNFPLPPPVFPSYPP-AVPPGTIPPVFPQPTANIM 1574
Score = 40 (19.1 bits), Expect = 6.5e-307, Sum P(3) = 6.5e-307
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 1642 VTSLIRPQPGPVRGHTNSSDLS 1663
+T++++PQP V ++++S +S
Sbjct: 1185 LTAIVKPQPA-VNHYSSNSSVS 1205
>ZFIN|ZDB-GENE-040426-1203 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease 1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743
ZFIN:ZDB-GENE-040426-1203 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
CTD:54464 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:CU929319 IPI:IPI00498230
RefSeq:NP_957327.2 UniGene:Dr.69803 Ensembl:ENSDART00000125413
GeneID:394008 KEGG:dre:394008 NextBio:20814974 ArrayExpress:F1Q4U5
Bgee:F1Q4U5 Uniprot:F1Q4U5
Length = 1697
Score = 2077 (736.2 bits), Expect = 3.7e-281, Sum P(4) = 3.7e-281
Identities = 450/994 (45%), Positives = 622/994 (62%)
Query: 121 RLPTEKRF-D-FITLKFCF----PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQ 174
R+ EK F D F L+ F P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +
Sbjct: 54 RISEEKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIK 113
Query: 175 KAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDV 234
KA EKGE LPTE RFDSNCITPGT FM RL +QL+YFV K++TDK W+ V
Sbjct: 114 KALEKGEVLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDK---------TWQGV 164
Query: 235 CVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLL 294
V LSGHETPGEGEHKIM++IR +KP +NPN RHCLYGLDADLIMLGL +HEP+FSLL
Sbjct: 165 NVYLSGHETPGEGEHKIMEFIRSESTKPGHNPNTRHCLYGLDADLIMLGLTSHEPHFSLL 224
Query: 295 REEVKFNTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENII 354
REEV+F K K +I PEET F LLHLSLMR+Y++ EF +L++ +SF + +E II
Sbjct: 225 REEVRFGGK--KSQKRITAPEETTFHLLHLSLMREYIDYEFSELRKK--ISFEYDLERII 280
Query: 355 DDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKF 414
DDWVLMGFL+GNDFIP+LP LHI + ALPLLY+ Y VLP+L GY+NE G+LNL FEK+
Sbjct: 281 DDWVLMGFLVGNDFIPHLPHLHINHDALPLLYRTYINVLPSLGGYLNENGHLNLTHFEKY 340
Query: 415 LTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDG 474
L KL+ FD E F E + D+++ E K+G K+ + ++E D K++DD
Sbjct: 341 LEKLSDFDREHFSEVFVDLKWFESKVGNKYVNEAAGLAAEEADGRDLKKSKSSDDSLCLA 400
Query: 475 TXXXXXXXXXXXXXXXXXXXXWRTN--FFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAEC 532
+ F +EF Q+K YY K+ V++E L +QA+C
Sbjct: 401 ALDGVRDSHSTAGRAEGAEEDGEDDDMFETEFRQYKRTYYMTKMGVEVVSDEFLANQAKC 460
Query: 533 YIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVL 592
Y+ IQW LHYYY+G SWSWYYP+HYAP++SD+++ S L+L +++ +PF+PF+QLLAVL
Sbjct: 461 YVEGIQWILHYYYHGVQSWSWYYPYHYAPFLSDVRNISGLSLTFDLAKPFMPFEQLLAVL 520
Query: 593 PAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAM 652
P+ASK+LLP+ YQ+LMT +SPI+EYYP++F TDLNGK+Q+WEAVVLIPFIDE L+ AM
Sbjct: 521 PSASKDLLPQCYQHLMTSLSSPIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAM 580
Query: 653 DAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTAL-APD--YFPAINENHAVEKPLYRDDI 709
+ H LT E++RNRH VY Y +L +PD FP I HA + P+ D
Sbjct: 581 EPYTHNLTPSEKARNRHTECAVYCYDK-DLDYPYNSPDPQIFPNIVHCHARQTPVPMDAW 639
Query: 710 YVHPNKLRKGLCQDVNLKLYVTHFPTLKHVQFTHKIENAK--VKVFQQPSRNESIII-VQ 766
V P+ +R C+ LY FPTL+H++ HK K V VFQQ SR E++I+ +
Sbjct: 640 RVSPDHVR---CRIDRGALYFCGFPTLQHIR--HKFYKKKSGVMVFQQSSRGENMILDIL 694
Query: 767 DKVQVPSLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSG----------- 815
++ +++VA +LG+++F+N+PHL+E RV AV+ +++ S ++ +G
Sbjct: 695 PSHEMVQVEEVAALVLGRSLFVNWPHLMEARVVAVSDGETKFSLEEPAGSQVLYMENNPP 754
Query: 816 PV-FERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVT 874
P R Q + + +T+ + + G+ I T+VLVYGQ + RKY G GKV
Sbjct: 755 PTKVSRVTDKEQKDWVKEVQGLTEHFSKRKGIAINETDVLVYGQLLTGRKYVIGQNGKVH 814
Query: 875 QQRTFIRSTVTYAYQSAVLNLQQARESL-EYKTIDEIFYPGCQCFALSNPHYGSGGCV-- 931
++ F + + + YQ+ V +++ SL +KT++E+F G F + NP+YG+ G V
Sbjct: 815 LEKQFAKQVLPFPYQTIVKDIKAFDSSLARFKTLEELFPLGTTVFMVGNPYYGAMGEVQD 874
Query: 932 ISTVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGS 991
S V E +++ F V EP L L+ Q Y P Y +AS+L I+ L+SRF+GS
Sbjct: 875 SSDVISEGR-VRVVFSVPCEPQLDALIQNQHKYSVKYSPGYVLASRLGITGYLVSRFSGS 933
Query: 992 IFIIDSTEEGAK-RHNIGLNIKFS-RKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQ 1049
IFI +++ + + + K E V + T K+W Y+ V LI Y+++
Sbjct: 934 IFIGRGSKKNPHGEQKVNVGLNLKFNKKNEEVPGYTK-RTEKEWLYSAAVEELIAEYLER 992
Query: 1050 FPEVFGFLKDHSSDDIYLRDDVFPHQGEQRVAQI 1083
F EVF + +S DDI+ DD++P + E V ++
Sbjct: 993 FSEVFDHVARNSHDDIFYEDDIWPGEDENGVEKV 1026
Score = 769 (275.8 bits), Expect = 6.1e-127, Sum P(4) = 6.1e-127
Identities = 165/436 (37%), Positives = 261/436 (59%)
Query: 806 SRISFDKNSGPVFE--RAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESR 863
S++ + +N+ P + R Q + + +T+ + + G+ I T+VLVYGQ + R
Sbjct: 744 SQVLYMENNPPPTKVSRVTDKEQKDWVKEVQGLTEHFSKRKGIAINETDVLVYGQLLTGR 803
Query: 864 KYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESL-EYKTIDEIFYPGCQCFALSN 922
KY G GKV ++ F + + + YQ+ V +++ SL +KT++E+F G F + N
Sbjct: 804 KYVIGQNGKVHLEKQFAKQVLPFPYQTIVKDIKAFDSSLARFKTLEELFPLGTTVFMVGN 863
Query: 923 PHYGSGGCV--ISTVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSI 980
P+YG+ G V S V E +++ F V EP L L+ Q Y P Y +AS+L I
Sbjct: 864 PYYGAMGEVQDSSDVISEGR-VRVVFSVPCEPQLDALIQNQHKYSVKYSPGYVLASRLGI 922
Query: 981 SPLLLSRFTGSIFIIDSTEE---GAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTE 1037
+ L+SRF+GSIFI +++ G ++ N+GLN+KF++KNEEV G+T+R E K+W Y+
Sbjct: 923 TGYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLNLKFNKKNEEVPGYTKRTE--KEWLYSA 980
Query: 1038 QVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGE---QRVAQIVSWLKEQPHAK 1094
V LI Y+++F EVF + +S DDI+ DD++P + E ++V +I WLK P +
Sbjct: 981 AVEELIAEYLERFSEVFDHVARNSHDDIFYEDDIWPGEDENGVEKVQEIQGWLKTHPVSS 1040
Query: 1095 AEVRPCGAAVVDAKVVSLIEHAVDT--CEKVEKQITLFVKPNKLYIPKPTLDKLCPDPDT 1152
C ++DA +V IE ++ +K+ K++ + VKP+ L+ P + PDPD+
Sbjct: 1041 ISRASCDLQILDAGIVEKIEEELEKTKAKKMNKKVRVTVKPHLLFRPLEQQHGVVPDPDS 1100
Query: 1153 KFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRG 1212
++ LFDRVVN+R+ ++VPLG RGTIIGI + + +Y+V+FD+ F G+ IRCS RG
Sbjct: 1101 EYHLFDRVVNVRESFSVPLGLRGTIIGIKGADREAEILYEVIFDEEFAGGLTIRCSPGRG 1160
Query: 1213 YRMPAQAMINLSYGER 1228
YR+P A+INLS+G R
Sbjct: 1161 YRLPPSALINLSHGSR 1176
Score = 569 (205.4 bits), Expect = 3.7e-281, Sum P(4) = 3.7e-281
Identities = 104/129 (80%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND D HFRI+E++I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 VLPTEARFD 129
Score = 62 (26.9 bits), Expect = 3.7e-281, Sum P(4) = 3.7e-281
Identities = 20/97 (20%), Positives = 37/97 (38%)
Query: 1736 ASSQPVPPDTTEDLEERADSYLAKLLRLTRAHNLGAPDYTFSMDASKLYVATVRICHPHS 1795
A P PP S +L R+ +G P++ F + L + V++ +
Sbjct: 1438 APPPPPPPHPLAGQPPLLPSMATELGRVCMGLRMGPPEFAFLRNRQSLILCQVKLSN--- 1494
Query: 1796 DIVVRGKPCAKKADSVEICARRAFNELTQI--YPTAP 1830
++V G C + ++ E A L + +P P
Sbjct: 1495 GLMVHGPQCQSETEAKEKAALFTLQRLNSLGSFPLPP 1531
Score = 49 (22.3 bits), Expect = 3.7e-281, Sum P(4) = 3.7e-281
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1642 VTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQ 1679
+T++++PQP +N S L N PR P + +Q
Sbjct: 1184 LTAIVKPQPSSSSQISNKSQLG-GLNHSPRS-PFIPTQ 1219
Score = 47 (21.6 bits), Expect = 2.9e-279, Sum P(4) = 2.9e-279
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 1623 QNKQAFPPHPDQLAQPGDDVTSLIRPQP-GPV 1653
Q + PHP QPG L+ PQ GP+
Sbjct: 1538 QQMRPLAPHPSMFGQPGGGF--LMPPQGYGPL 1567
Score = 47 (21.6 bits), Expect = 2.4e-50, Sum P(4) = 2.4e-50
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 432 DIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIK 465
D+Q L+ + +K + K K+K+M+ + +K
Sbjct: 1047 DLQILDAGIVEKIEEELEKTKAKKMNKKVRVTVK 1080
Score = 46 (21.3 bits), Expect = 7.7e-281, Sum P(4) = 7.7e-281
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 1497 DNGGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNT-- 1554
+N G++ P + +L +S NDT + K + ++ LL++N++LNT
Sbjct: 1281 NNAGKSQMPHQN---QLEGQNKQSQGNDT----SIKLGLGGNIR----LLKRNEDLNTAL 1329
Query: 1555 --PSG-GELSFEEKHSMAAKSKNETTP 1578
PS FEE + SK+ P
Sbjct: 1330 QGPSNKASTEFEELIANLKISKDPEPP 1356
Score = 45 (20.9 bits), Expect = 9.8e-281, Sum P(4) = 9.8e-281
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 1493 NSPSDNGGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAI-SAMVQQSPHLLEKNK- 1550
N D G +P + + N + SSN+ E N ++ SAM Q+ P + N
Sbjct: 1228 NLRGDTQGNRNSPHKALNQR--NQ-QKGSSNEKEFSNVWQSLQNSAMPQKPPAHWQNNAG 1284
Query: 1551 ELNTPSGGELSFEEKHS 1567
+ P +L + K S
Sbjct: 1285 KSQMPHQNQLEGQNKQS 1301
Score = 44 (20.5 bits), Expect = 4.9e-50, Sum P(4) = 4.9e-50
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 1064 DIYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
++YL P +GE ++ + + +P R C + DA ++ L
Sbjct: 165 NVYLSGHETPGEGEHKIMEFIRSESTKPGHNPNTRHCLYGL-DADLIML 212
>RGD|1309713 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA;ISO] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 RGD:1309713 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OrthoDB:EOG49S65H
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
IPI:IPI00373532 Ensembl:ENSRNOT00000014481 UCSC:RGD:1309713
Uniprot:D4ABN8
Length = 1723
Score = 1819 (645.4 bits), Expect = 9.5e-248, Sum P(3) = 9.5e-248
Identities = 381/817 (46%), Positives = 520/817 (63%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSALKEK--ITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFE++L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXXXXXXXXXXXXWR 497
K+G K+ + ++E + K + ++
Sbjct: 363 SKVGNKYLNEAAGAAAEEAK---SCKDKRKEKGQENSLSWAALDKREGEGVASRDNFEDE 419
Query: 498 TN----FFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSW 553
T F +EF Q+K YY K+ V++E L DQA CY++AIQW LHYYY+G SWSW
Sbjct: 420 TEDDDLFETEFRQYKRTYYMTKMGVDVVSDEFLADQAACYVQAIQWILHYYYHGVQSWSW 479
Query: 554 YYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENS 613
YYP+HYAP++SDI++ S L + +E+G+PF PF+QLLAVLP+ASK LLP YQ+LMT E+S
Sbjct: 480 YYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPSASKTLLPTCYQHLMTSEDS 539
Query: 614 PILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPML 673
PI+EYYP +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+ H L EER RN+H L
Sbjct: 540 PIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECL 599
Query: 674 VYTYSNVNLGTALAP--DYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQDVNLK-L 728
+ Y + T +P + FPAI K + D + ++ NK+ + V+ K L
Sbjct: 600 MCWYDSDTEFTYSSPWPEKFPAIERCSTRYKIISLDAWRVDINKNKITR-----VDQKAL 654
Query: 729 YVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII---VQDKVQVPSLKQVADQILGKT 785
Y FPTLKH++ ++ + V+VFQQ SR E++++ V + S++ +A +LGK+
Sbjct: 655 YFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENMMLEITVNAEPDELSIENIASSVLGKS 714
Query: 786 IFINYPHLIEIRVQAVATKDSRISFDKNSGP--VFERAAKDMQDAFQLSKKS-------- 835
+F+N+PHL E RV AV+ +++ ++ G V+ QLS K
Sbjct: 715 VFVNWPHLEEARVVAVSDGETKFYMEEPPGTQKVYLGKTAPPCKVIQLSDKEQSNWTKEI 774
Query: 836 --ITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
I++ Y + G+ I T +VY Q + R+Y G+V ++ + + ++ + YQ+ V
Sbjct: 775 QGISEQYLRRKGIMINETSAVVYAQLLTGRRYQVNQNGEVRLEKQWSKQSLPFVYQTIVK 834
Query: 894 NLQQARESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
+++ KT+D++F P F L P+YG G
Sbjct: 835 DVRAFDSRFSNIKTLDDLFPPRSVVFMLGTPYYGCTG 871
Score = 710 (255.0 bits), Expect = 9.5e-118, Sum P(3) = 9.5e-118
Identities = 154/442 (34%), Positives = 253/442 (57%)
Query: 807 RISFDKNSGP--VFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRK 864
++ K + P V + + K+ Q + + I++ Y + G+ I T +VY Q + R+
Sbjct: 747 KVYLGKTAPPCKVIQLSDKE-QSNWTKEIQGISEQYLRRKGIMINETSAVVYAQLLTGRR 805
Query: 865 YFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQ--QARESLEYKTIDEIFYPGCQCFALSN 922
Y G+V ++ + + ++ + YQ+ V +++ +R S KT+D++F P F L
Sbjct: 806 YQVNQNGEVRLEKQWSKQSLPFVYQTIVKDVRAFDSRFS-NIKTLDDLFPPRSVVFMLGT 864
Query: 923 PHYGSGGCVIST--VKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSI 980
P+YG G V + V E I++ F + EP+L L+ Q Y P Y +A +L +
Sbjct: 865 PYYGCTGEVQDSGDVITEGR-IRVVFSIPCEPNLDALIQNQHKYSIKYNPGYVLAGRLGV 923
Query: 981 SPLLLSRFTGSIFIIDSTEE---GAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTE 1037
S L+SRFTGSIFI + G + N+GLN+KF++KNEEV G+T+R +W Y+
Sbjct: 924 SGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKR--VGSEWMYSS 981
Query: 1038 QVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGE---QRVAQIVSWLKEQPHAK 1094
L+ Y+++ PE+F ++ +S +D++ DD++P + E ++V +I++WLK P +
Sbjct: 982 AAEQLLAEYIERAPELFSYIAQNSQEDVFYEDDIWPGESESGAEKVQEIITWLKGHPVST 1041
Query: 1095 AEVRPCGAAVVDAKVVSLIEHAVDTCE--KVEKQITLFVKPNKLYIPKPTLDKLCPDPDT 1152
C ++DA +V IE V+ C+ K K++ + VKP+ L+ P PD D
Sbjct: 1042 LSRSSCDLHILDAAIVEKIEEEVEKCKQRKNNKKVRVTVKPHLLFRPLEQQHGAIPDRDA 1101
Query: 1153 KFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSESRG 1212
+F+LFDRVVN+R+ ++VP+G RGTIIGI D +++V+FD+ FP G+ IRCS RG
Sbjct: 1102 EFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRG 1161
Query: 1213 YRMPAQAMINLSYGERLCGNSN 1234
YR+P A++NLS+G R C N
Sbjct: 1162 YRLPTSALVNLSHGSR-CETGN 1182
Score = 565 (203.9 bits), Expect = 9.5e-248, Sum P(3) = 9.5e-248
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 45 (20.9 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 43 (20.2 bits), Expect = 9.5e-248, Sum P(3) = 9.5e-248
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 894 NLQQARESLEYKTIDEIFYPG 914
++ Q + EY+++D + +PG
Sbjct: 1446 HVSQPHSTNEYQSVDSVCWPG 1466
Score = 41 (19.5 bits), Expect = 1.0e-62, Sum P(3) = 1.0e-62
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 104 SAKEAEVLEQKAKEKGE 120
+A+EA+ + K KEKG+
Sbjct: 377 AAEEAKSCKDKRKEKGQ 393
Score = 40 (19.1 bits), Expect = 2.0e-247, Sum P(3) = 2.0e-247
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1631 HPDQLAQPGDDVTSLIRPQPGPVRGHTNSS 1660
H + +T++++PQP NSS
Sbjct: 1174 HGSRCETGNQKLTAIVKPQPAVSHCSVNSS 1203
Score = 40 (19.1 bits), Expect = 2.0e-247, Sum P(3) = 2.0e-247
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 986 SRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDE 1028
+R I IDS + ++++ KF NE +V +RRDE
Sbjct: 1393 TRMLKEILKIDSPDTTDSKNDVK---KFD--NEVMVSSSRRDE 1430
Score = 39 (18.8 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 7 FRYIS---ERYPCLSEVVREYQIPEFDNLYLDMN 37
F Y S E++P + Y+I D +D+N
Sbjct: 609 FTYSSPWPEKFPAIERCSTRYKIISLDAWRVDIN 642
Score = 39 (18.8 bits), Expect = 3.8e-48, Sum P(2) = 3.8e-48
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 590 AVLPAASKELLPEPYQNLM 608
AV P A + P+P N+M
Sbjct: 1557 AVPPGAVPPVFPQPTANMM 1575
>FB|FBgn0020261 [details] [associations]
symbol:pcm "pacman" species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0007369
"gastrulation" evidence=NAS] [GO:0006401 "RNA catabolic process"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0034428 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 5'-3'" evidence=IMP] [GO:0042060
"wound healing" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0046529 "imaginal disc
fusion, thorax closure" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0010603 "regulation of cytoplasmic mRNA processing body
assembly" evidence=IMP] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0016246 GO:GO:0000184
GO:GO:0007391 EMBL:AE014298 GO:GO:0007283 GO:GO:0003676
GO:GO:0042060 GO:GO:0000932 GO:GO:0007476 GO:GO:0008409
GO:GO:0046529 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 RefSeq:NP_001162796.1 UniGene:Dm.7395
PDB:2LYD PDB:2Y35 PDBsum:2LYD PDBsum:2Y35
EnsemblMetazoa:FBtr0302082 GeneID:32935 KEGG:dme:Dmel_CG3291
CTD:32935 FlyBase:FBgn0020261 OMA:FVPIQAY PhylomeDB:E1JJR3
GenomeRNAi:32935 NextBio:781106 Bgee:E1JJR3 GO:GO:0034428
GO:GO:0010603 Uniprot:E1JJR3
Length = 1613
Score = 1411 (501.8 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 333/905 (36%), Positives = 496/905 (54%)
Query: 350 IENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLK 409
I +IDDWVLMGFL+GNDFIP+LP LHI + ALPLLY+ Y + PTL G INE G LNL+
Sbjct: 271 IAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLR 330
Query: 410 RFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDD 469
R + F++ L + + F+E D++Y+ K DV +S+ +D DL ALI +
Sbjct: 331 RLQIFISALTEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSML 390
Query: 470 DYDDGTXXXXXXXXXXXXXXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQ 529
YDD + EF +K ++Y K +E++ +
Sbjct: 391 LYDDDSEEDCSDENAV--------------LLKEFQNYKRNFYRNKFK-RDPNDELIEEL 435
Query: 530 AECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLL 589
Y+ A+QW L YYY G SW WYYP HY P+ISD+K+ + + + MG PFLPFQQLL
Sbjct: 436 CHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLL 495
Query: 590 AVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLI 649
AVLPAAS +LLP Y +LM L SP+ E+YP EF +DLNGKK DWEAVVLIPFIDE +L+
Sbjct: 496 AVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLL 555
Query: 650 KAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFP--AINENHAVEKPLYRD 707
AM E L+ EER RNRHGPM VY YS V G P Y P A+ + E +
Sbjct: 556 AAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQGPM--PAYPPLRALPVLYCTEVAKWSH 613
Query: 708 DIYVHPNKLRKGLCQDV-NLK--LYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII 764
+I V+ L +C ++ N ++ FPT++H+ F ++ N +VKVF+Q SRN++I++
Sbjct: 614 EIAVN---LPYSVCIELPNAARTVFFPGFPTMQHLPFDFELRNDRVKVFEQVSRNQNIVL 670
Query: 765 VQDKVQVP-SLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFERAAK 823
K Q+ +L VA Q LGK I + +PHL++ V VAT+D R+ + G + +
Sbjct: 671 KPRKRQLEDTLTAVASQYLGKVIHVGWPHLVKAIVVRVATRDQRVD---SEGITLNDSRR 727
Query: 824 DMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRST 883
F K++ + + ++G+ N +VLVY + F +G + + ++ S
Sbjct: 728 -----FDSECKALQEHFINRMGIQFANYDVLVYVRTFAGNSTEFRDKGALMVRDSWSSSV 782
Query: 884 VTYAYQSAVLNLQQ-ARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST-VKEENSF 941
Y Q V +L R + ++ F G F +++P+YGS G V + N
Sbjct: 783 TGYPAQGVVADLTVWERMRKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGR 842
Query: 942 IKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTE-- 999
I++S V+ EP ++ LQ++ +YL ++ V + L IS L R +G+++++
Sbjct: 843 IQVSIMVRPEPKVNAARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPRRQ 902
Query: 1000 --EGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFL 1057
E +HNIGL +K+ R+NEE G+ R T +W+Y+ V L++NY +++P+V F
Sbjct: 903 KMENVTKHNIGLQLKYPRQNEERAGYCFR--TNNQWYYSSLAVDLMRNYCQRYPDVIDFF 960
Query: 1058 KDHSSD--DIYLRDDVFPHQ-GEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIE 1114
D S+D + DVFP+ G +RV ++ +W+++QPH K E CG+ V + + L+
Sbjct: 961 GD-SNDRAEFVFEQDVFPNAVGHRRVEELANWVRQQPHMKVERISCGSKTVCRETIELLI 1019
Query: 1115 HAVDTCEKVE-KQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGY 1173
AVD + K + L VKP+ L P TL + +LFDRVV +R Y VP+G
Sbjct: 1020 AAVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVYRSK-RPVRLFDRVVIVRTIYMVPVGT 1078
Query: 1174 RGTIIGI--------VQGETSY--DAMYDVVFDKPFPHGVKIR-CSESRGYRMPAQAMIN 1222
+GT+IGI V+ E + D V+FD P P+ I +E R Y++P A++
Sbjct: 1079 KGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALVI 1138
Query: 1223 LSYGE 1227
+ E
Sbjct: 1139 IKTDE 1143
Score = 926 (331.0 bits), Expect = 4.9e-87, Sum P(3) = 4.9e-87
Identities = 202/423 (47%), Positives = 267/423 (63%)
Query: 128 FDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPT 185
F+++ F P++LFF+++DGVAPRAKMNQQR RRFR+A+EAE E KA ++GE L
Sbjct: 65 FNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE-LRE 123
Query: 186 EKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPG 245
+RFDSNCITPGT FM RL + LR F+K KI+TD LW+ VILSG E PG
Sbjct: 124 HERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCT---------VILSGQEAPG 174
Query: 246 EGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSN 305
EGEHKIMDYIRYMK++PDY+PN RHCLYGLDADLI+LGLCTHE +F +LREEVKF
Sbjct: 175 EGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFGRNVK 234
Query: 306 KGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIG 365
+ + EET+FFLLHL L+R+YLELEF L+ I +IDDWVLMGFL+G
Sbjct: 235 R-----TSVEETRFFLLHLGLLREYLELEFDALRTD---EHKLDIAQLIDDWVLMGFLVG 286
Query: 366 NDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQ 425
NDFIP+LP LHI + ALPLLY+ Y + PTL G INE G LNL+R + F++ L + +
Sbjct: 287 NDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDH 346
Query: 426 FREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTXXXXXXXXXX 485
F+E D++Y+ K DV +S+ +D DL ALI + YDD +
Sbjct: 347 FKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAV 406
Query: 486 XXXXXXXXXXWRTNFF-SEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQ-WNLHY 543
++ NF+ ++F + D +L + V L+ + Y R +Q W+ +Y
Sbjct: 407 LLKEFQN---YKRNFYRNKFKRDPNDELIEELCHHYVN--ALQWVLDYYYRGVQSWDWYY 461
Query: 544 YYN 546
++
Sbjct: 462 PFH 464
Score = 499 (180.7 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 90/129 (69%), Positives = 113/129 (87%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKFFRYISERYPCLSE+ RE+ IPEFDNLYLDMNGI+HNCSHP+DN+ HF + E+QI
Sbjct: 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
FQ+IF+Y++ LF +I+P++LFF+++DGVAPRAKMNQQR RRFR+A+EAE E KA ++GE
Sbjct: 61 FQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE 120
Query: 121 RLPTEKRFD 129
L +RFD
Sbjct: 121 -LREHERFD 128
Score = 47 (21.6 bits), Expect = 6.3e-40, Sum P(4) = 6.3e-40
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 173 EQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQL-RYFVKLKITT 218
+Q+ +G L +RFDS C F+ R+ Q Y V + + T
Sbjct: 712 DQRVDSEGITLNDSRRFDSECKALQEHFINRMGIQFANYDVLVYVRT 758
Score = 41 (19.5 bits), Expect = 1.7e-197, Sum P(3) = 1.7e-197
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 1502 TATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMV-----QQSPHLLEKNKELNTP 1555
T TPD + +T T SS+ T + T A+ +++ Q SP L E ++ P
Sbjct: 1266 TKTPDAAASTASTAFTAASSATLTPLDQTL--ALMSVLGVGEDQSSPPLQEAVQQQRPP 1322
Score = 41 (19.5 bits), Expect = 4.9e-87, Sum P(3) = 4.9e-87
Identities = 26/100 (26%), Positives = 42/100 (42%)
Query: 991 SIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMK-Q 1049
++ II + EEG K+++ L ++ + N+ R T + T T + MK Q
Sbjct: 1135 ALVIIKTDEEGKKQNDCELPVRDPQPNQAQDEPVR---ATSSRYVTAAGSTSVPITMKTQ 1191
Query: 1050 FPEVFGFLKDHSSDDIYLRDDVFPHQGEQRVA---QIVSW 1086
+ F +K S D I D P + V QI +W
Sbjct: 1192 ISDEF--VKTRS-DPIARTDSYKPSSEPKPVPVPEQITNW 1228
>UNIPROTKB|F6XNM6 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:AAEX03013647 Ensembl:ENSCAFT00000012512 Uniprot:F6XNM6
Length = 1702
Score = 1019 (363.8 bits), Expect = 2.8e-181, Sum P(3) = 2.8e-181
Identities = 195/307 (63%), Positives = 237/307 (77%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE LPTE RFDSNCITPG
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR
Sbjct: 137 TEFMARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRS 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQ---RVCAPEET 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F LLHLSLMR+Y++ EF +LK ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 245 TFHLLHLSLMREYIDYEFSELKAK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY Y +LP L GYINE G+LNL RFEK+L KL+ FD E F E + D+++ E
Sbjct: 303 NHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 438 GKMGKKF 444
K+G K+
Sbjct: 363 SKVGNKY 369
Score = 841 (301.1 bits), Expect = 2.8e-181, Sum P(3) = 2.8e-181
Identities = 182/451 (40%), Positives = 269/451 (59%)
Query: 500 FFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHY 559
F +EF Q+K YY K+ V+++ L DQA CY++AIQW LHYYY+G SWSWYYP+HY
Sbjct: 423 FETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHY 482
Query: 560 APYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYY 619
AP++SDI++ S L + +E+G+PF PF+QLLAVLPAASK LLP YQ+LMT E+SPI+EYY
Sbjct: 483 APFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPIIEYY 542
Query: 620 PEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSN 679
P +F TDLNGK+Q+WEAVVLIPFIDE +L++AM+A H L EER RN+H L+ Y
Sbjct: 543 PPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRNQHSECLMCWYDR 602
Query: 680 VNLGTALAP--DYFPAINENHAVEKPLYRDD--IYVHPNKLRKGLCQDVNLK-LYVTHFP 734
T +P + FPAI K + D + + NK+ + V+ K LY FP
Sbjct: 603 DTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITR-----VDQKALYFCGFP 657
Query: 735 TLKHVQFTHKIENAKVKVFQQPSRNESI---IIVQDKVQVPSLKQVADQILGKTIFINYP 791
TLKH++ ++ + V+VFQQ SR E++ I+V + +++ +A +LGK++F+N+P
Sbjct: 658 TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELNVENIASSVLGKSVFVNWP 717
Query: 792 HLIEIRVQAVATKDSRISFDKNSGP---VFERAAKDM---------QDAFQLSKKSITDG 839
HL E RV V+ +++ ++ G R A Q + + I++
Sbjct: 718 HLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEY 777
Query: 840 YYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQAR 899
Y + G+ I T +VY Q + RKY G+V ++ + + + + YQ+ V +++
Sbjct: 778 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFD 837
Query: 900 ESLE-YKTIDEIFYPGCQCFALSNPHYGSGG 929
KT+D++F P F L P+YG G
Sbjct: 838 SRFSNIKTLDDLFPPRSMVFMLGTPYYGCTG 868
Score = 712 (255.7 bits), Expect = 1.1e-167, Sum P(3) = 1.1e-167
Identities = 148/407 (36%), Positives = 240/407 (58%)
Query: 834 KSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVL 893
+ I++ Y + G+ I T +VY Q + RKY G+V ++ + + + + YQ+ V
Sbjct: 772 QGISEYYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVK 831
Query: 894 NLQ--QARESLEYKTIDEIFYPGCQCFALSNPHYGSGGCVIST--VKEENSFIKLSFKVQ 949
+++ +R S KT+D++F P F L P+YG G V + V E I++ F +
Sbjct: 832 DIRAFDSRFS-NIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGR-IRVVFSIP 889
Query: 950 QEPDLSDLVHLQDDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEE---GAKRHN 1006
EP+L L+ Q Y P Y +AS+L +S L+SRFTGSIFI + G + N
Sbjct: 890 CEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKAN 949
Query: 1007 IGLNIKFSRKNEEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIY 1066
+GLN+KF++KNEEV G+T++ +W Y+ L+ Y+++ PE+F ++ +S +D++
Sbjct: 950 VGLNLKFNKKNEEVPGYTKK--VGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVF 1007
Query: 1067 LRDDVFPHQGE---QRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCE-- 1121
DD++P + E ++V +I++WLK P + C ++DA +V IE V+ C+
Sbjct: 1008 YEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQR 1067
Query: 1122 KVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIV 1181
K K++ + VKP+ LY P + PD D +F+LFDRVVN+R+ ++VP+G RGTIIGI
Sbjct: 1068 KNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIK 1127
Query: 1182 QGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQAMINLSYGER 1228
D +++V+FD+ FP G+ IRCS RGYR+P A++NL++G R
Sbjct: 1128 GANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTCALVNLTHGSR 1174
Score = 566 (204.3 bits), Expect = 3.7e-132, Sum P(3) = 3.7e-132
Identities = 103/129 (79%), Positives = 119/129 (92%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFRSAKEAE +KA EKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE 120
Query: 121 RLPTEKRFD 129
LPTE RFD
Sbjct: 121 TLPTEARFD 129
Score = 45 (20.9 bits), Expect = 2.5e-47, Sum P(3) = 2.5e-47
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
IY P +GE ++ + + K +P R C + DA ++ L
Sbjct: 166 IYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGL-DADLIML 212
Score = 41 (19.5 bits), Expect = 6.5e-47, Sum P(3) = 6.5e-47
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 401 NEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDL 460
NE G ++ ++ +T L D+Q L+ + +K + K K ++ + +
Sbjct: 1017 NENG---AEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKV 1073
Query: 461 AALIK 465
+K
Sbjct: 1074 RVTVK 1078
Score = 38 (18.4 bits), Expect = 2.8e-181, Sum P(3) = 2.8e-181
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 1642 VTSLIRPQPGPVRGHTNSS 1660
+T++++PQP +NSS
Sbjct: 1182 LTAIVKPQPAVNHYGSNSS 1200
Score = 38 (18.4 bits), Expect = 2.8e-181, Sum P(3) = 2.8e-181
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 1632 PDQLAQPGD-DVTSLIRPQPGPVRGHTNSSDLSRSTNAQP 1670
P Q +QPG +VT +I PQ ++S+ L S QP
Sbjct: 1626 PLQTSQPGSSNVTKVI-PQ------ESSSASLKSSQITQP 1658
>WB|WBGene00012730 [details] [associations]
symbol:xrn-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0016246 GO:GO:0003676
GO:GO:0005622 GO:GO:0008409 EMBL:AL032634 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
OMA:NIFAYIE RefSeq:NP_496945.3 UniGene:Cel.6888
ProteinModelPortal:Q9BHK7 SMR:Q9BHK7 STRING:Q9BHK7 PaxDb:Q9BHK7
EnsemblMetazoa:Y39G8C.1 GeneID:175059 KEGG:cel:CELE_Y39G8C.1
UCSC:Y39G8C.1 CTD:175059 WormBase:Y39G8C.1 HOGENOM:HOG000021950
InParanoid:Q9BHK7 NextBio:886590 Uniprot:Q9BHK7
Length = 1591
Score = 901 (322.2 bits), Expect = 2.7e-177, Sum P(6) = 2.7e-177
Identities = 182/339 (53%), Positives = 233/339 (68%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P+K+FFMA+DGVAPRAKMNQQR RRF SA+ A KA E GE +P+E RFDSNCITPG
Sbjct: 77 PQKVFFMAVDGVAPRAKMNQQRARRFMSARTAHTQLAKALENGEIMPSEARFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RLHQ+L ++K K TD W+ +ILSGH PGEGEHKIMD+IR
Sbjct: 137 TYFMTRLHQKLDDWIKTKSATDSRWQGRK---------IILSGHNVPGEGEHKIMDFIRT 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVT-PEE 316
++ Y+PN RHC+YGLDADLIMLG+ +HEP+FSLLREEV FNT+ K ++ P+
Sbjct: 188 ERAGSSYDPNTRHCMYGLDADLIMLGIVSHEPHFSLLREEVTFNTRPRKNDNKATKKPKR 247
Query: 317 T-----KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPN 371
T KF LLHLSL+R+YL EF +K+ L F + +E I+DDW+L+G L+GNDF+P+
Sbjct: 248 TDSDVKKFHLLHLSLLREYLAWEFADVKDS--LPFEYEMERIVDDWILLGLLVGNDFLPH 305
Query: 372 LPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYA 431
LP++HI + ALPLLY Y++VLPTLDGYINE GYLNL RFE FL +LA D F E+
Sbjct: 306 LPNIHIHDDALPLLYSTYKKVLPTLDGYINEAGYLNLSRFEAFLAELALNDKTSFMERLE 365
Query: 432 DIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDD 470
D Q++E K + V E+ + +P+L A + +D
Sbjct: 366 DEQFMESKRIR----VVDPEQQELAEPELVAFESSDVED 400
Score = 658 (236.7 bits), Expect = 2.7e-177, Sum P(6) = 2.7e-177
Identities = 129/384 (33%), Positives = 221/384 (57%)
Query: 468 DDDYDDGTXXXXXXXXXXXXXXXXXXXXWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLR 527
+D+++D W ++F +HK YY KL Y ++ + LR
Sbjct: 456 EDEFNDELATLALSGMNDADFANDVEACWTKTINNQFKRHKKTYYSDKLRYKNISKQQLR 515
Query: 528 DQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQ 587
+QAE Y+RAIQWNLHYYY+GCVSWSW+YPHHYAP+ISD++ F + +++E+ EPF PF+Q
Sbjct: 516 EQAEGYVRAIQWNLHYYYHGCVSWSWFYPHHYAPFISDVRGFVGMRMEFELSEPFHPFEQ 575
Query: 588 LLAVLPAASKELLPEPYQNLMTLE--NSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDE 645
LLAVLP AS + LP P + LM+ + SPI ++YP F TDLNGK+ +WEAVVLIPFI+E
Sbjct: 576 LLAVLPEASADCLPRPLRELMSSDPAKSPICDFYPANFETDLNGKRNEWEAVVLIPFIEE 635
Query: 646 VKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLY 705
+L++A++A LT EE +RN HG S++ ++ P + + V +
Sbjct: 636 KRLLEAIEAKRSRLTSEENARNSHG-------SHIQCISSPEPPN--SQGQWRTVRSEIP 686
Query: 706 RDDIYVHPNKLRKGLCQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIII- 764
+D + ++++ GL +V + +Y FPT+KH+ ++ A +F SR ES+++
Sbjct: 687 QDSFRIPRSQVKWGLLPNVKMDVYFPGFPTMKHLSHLGELRFANCNIFGMASRKESMVLK 746
Query: 765 VQDKVQVPSLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFERAAKD 824
V+++ + ++ ++ + + I++P L ++ ++ D +I + + + +++
Sbjct: 747 VENERAHTDIIELGSELCDEEVCIDWPILKVAKIDSIWGGDDKIVRKCDDEIIVKDMSEE 806
Query: 825 MQDAFQLSKKSITDGYYTKLGVDI 848
+ +Q +T+ T+ ++I
Sbjct: 807 EKRQWQAHANQLTEHLMTRFAIEI 830
Score = 492 (178.3 bits), Expect = 1.2e-131, Sum P(6) = 1.2e-131
Identities = 92/129 (71%), Positives = 107/129 (82%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ SERYPCLSEV+ E QIPEFDNLYLDMNGIIHNCSHPND+D FRITE +I
Sbjct: 1 MGVPKFYRWTSERYPCLSEVINESQIPEFDNLYLDMNGIIHNCSHPNDDDVTFRITEDEI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F +IF YIE L+ +I+P+K+FFMA+DGVAPRAKMNQQR RRF SA+ A KA E GE
Sbjct: 61 FVNIFAYIENLYNLIRPQKVFFMAVDGVAPRAKMNQQRARRFMSARTAHTQLAKALENGE 120
Query: 121 RLPTEKRFD 129
+P+E RFD
Sbjct: 121 IMPSEARFD 129
Score = 279 (103.3 bits), Expect = 2.7e-177, Sum P(6) = 2.7e-177
Identities = 82/285 (28%), Positives = 138/285 (48%)
Query: 1006 NIGLNIKFSRKNEEVVGFTRRDE-------TTKKWFYTEQVVTLIKNYMKQFPEVFGFLK 1058
N GL +K+SR++ V +T R E T K WFYT L+ Y ++FP+V+ +L+
Sbjct: 1020 NCGLALKYSRRDLCVADYTDRTEHTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKYLE 1079
Query: 1059 D---HSSDDIYLRDDVFPHQG--EQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLI 1113
DD+Y +D++ ++ E+R ++ +L P +AE CG D ++++ I
Sbjct: 1080 TIGLTQQDDVYYTEDIWSNEKTREKRFGELSEFLGGLPSLEAEQLKCGTVYADRQLITEI 1139
Query: 1114 EHAV-DTCEKVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLG 1172
E + + EK + P L+ + K+ DP F++ DRV + VP
Sbjct: 1140 EMILAEPDEKKPVMNKYMMAPGALFRYELYNGKVHADPAADFQILDRVALMSSDTKVPKT 1199
Query: 1173 YRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCS-ESRGYRMPAQAMINLSYGERLCG 1231
+GT++GI +D DV FDKPF G K+R S E+ R+P A++N+++G +
Sbjct: 1200 TQGTVVGI------HDDKIDVFFDKPFDGGQKVRGSNEAAAIRVPQSALLNVTFG--IVR 1251
Query: 1232 NSNPHVKNINVMQSRGERNTNYAQVTRQPQRTTFYKENAPLVNSN 1276
+ H K + E+ A V Q+ + E AP +S+
Sbjct: 1252 KNVQHKKQV-------EKALTGAYVPMPAQKNSAKNEPAPSTSSS 1289
Score = 72 (30.4 bits), Expect = 2.7e-177, Sum P(6) = 2.7e-177
Identities = 33/145 (22%), Positives = 64/145 (44%)
Query: 912 YPGCQCFALSNPHY---GSGGCV--ISTVKEENSFIK-LSFKVQQEPDLSDLVHLQ-DDT 964
YP +++P + G G V S K + I+ + Q + D + + + +
Sbjct: 909 YPKQSIVWITDPKFALFGMPGMVNGFSNEKSADCRIEVIGMSTQNKVDKMEALRKKMEQK 968
Query: 965 VYNYLPSYTVASKLSISPLLLSRFTGSIFIIDS----TEEGAK------RHNIGLNIKFS 1014
++ Y A + + L +R TG++F+ + E+G + + N GL +K+S
Sbjct: 969 SLRWMGGYDCARQCQVDTRLFARITGTMFLWNEPRERVEKGQQISSSDSKINCGLALKYS 1028
Query: 1015 RKNEEVVGFTRRDETTKKWFYTEQV 1039
R++ V +T R E T + T +V
Sbjct: 1029 RRDLCVADYTDRTEHTNQRGVTNKV 1053
Score = 47 (21.6 bits), Expect = 2.7e-177, Sum P(6) = 2.7e-177
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1727 SKPPHP--ILNASSQPVPPDTTEDLEERA 1753
++PP I +S P PP+ ED RA
Sbjct: 1522 NQPPKVTMITKRTSSPTPPEKEEDAAPRA 1550
Score = 45 (20.9 bits), Expect = 1.4e-152, Sum P(6) = 1.4e-152
Identities = 19/89 (21%), Positives = 33/89 (37%)
Query: 1496 SDNGGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKEL-NT 1554
S+ P ++ + ++ + + E A M Q KN+ +T
Sbjct: 1229 SNEAAAIRVPQSALLNVTFGIVRKNVQHKKQVEKALTGAYVPMPAQKNSA--KNEPAPST 1286
Query: 1555 PSGGELSFEEKHSMAAKSKNETTPTIKTE 1583
S S K + + K KN+ PT KT+
Sbjct: 1287 SSSNSNSTNNKKNSSKKEKNKQKPT-KTD 1314
Score = 44 (20.5 bits), Expect = 2.7e-177, Sum P(6) = 2.7e-177
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 1328 KLNQVNTSSAPKEKPRTSEQNQIKSNGNEQKV-IINK 1363
+L+ ++APK K S++ Q QKV I+ K
Sbjct: 1387 QLSAAQKAAAPKPKKEASQKKQKPQAAPPQKVEILRK 1423
Score = 42 (19.8 bits), Expect = 4.5e-177, Sum P(6) = 4.5e-177
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 1616 QQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGP 1652
Q+ P+ K+A A P V L +P P P
Sbjct: 1392 QKAAAPKPKKEASQKKQKPQAAPPQKVEILRKPTPPP 1428
Score = 39 (18.8 bits), Expect = 2.4e-109, Sum P(5) = 2.4e-109
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 659 LTDEERSRNRHGPMLVYTYSNVNLGTAL 686
L +E R R G + + S +N G AL
Sbjct: 998 LWNEPRERVEKGQQISSSDSKINCGLAL 1025
>ASPGD|ASPL0000014026 [details] [associations]
symbol:AN11052 species:162425 "Emericella nidulans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 EMBL:BN001302
GO:GO:0008409 OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
EnsemblFungi:CADANIAT00004228 Uniprot:C8V746
Length = 1398
Score = 908 (324.7 bits), Expect = 1.8e-173, Sum P(2) = 1.8e-173
Identities = 174/329 (52%), Positives = 235/329 (71%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PKKLFFMA+DGVAPRAKMNQQR RRFR+A +AE ++KA +G +P E FDSNCITPG
Sbjct: 77 PKKLFFMAVDGVAPRAKMNQQRARRFRTALDAEQAKEKAIAQGIEMPKEDPFDSNCITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM +L +QL+YF+ KI+ DK D W+ V ++LSGHE PGEGEHKIM+YIR+
Sbjct: 137 TEFMAKLTEQLKYFISKKISEDK---D------WQGVEIVLSGHEVPGEGEHKIMEYIRH 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K++P Y+PN+RHCLYGLDADLIMLGL +H+P+F LLREEV F + K ++ E
Sbjct: 188 AKAQPGYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQVQKKPKEL---EHQ 244
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
F+LLHL ++R+YL+LEF +L+E G++ FP+ E +IDD++LM F +GNDF+PNLP+LHI
Sbjct: 245 NFYLLHLCMVREYLQLEFQELEEEGIIDFPYEFERVIDDFILMAFFVGNDFLPNLPNLHI 304
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
GAL L++KVY+EVLP + GYINE G +NL+R L L+ ++ F +Y+D ++
Sbjct: 305 NEGALSLMFKVYKEVLPKMGGYINEQGTINLQRLGVLLDALSHVEYRFFEAEYSDATWMR 364
Query: 438 GKMGK-KFSDVFHKEKSKEMDPDLAALIK 465
K +DV K K+ + PD ++K
Sbjct: 365 AKQSADNGADVDAKPKTFTVTPDQKNILK 393
Score = 864 (309.2 bits), Expect = 1.8e-173, Sum P(2) = 1.8e-173
Identities = 239/743 (32%), Positives = 381/743 (51%)
Query: 503 EFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPY 562
+F K YY K + +E +R E Y++ +QW L YYY G SW W++ HYAP
Sbjct: 504 KFQDWKDKYYMEKFGWGLDNHEEMRKLTENYVQGLQWVLFYYYRGIASWPWFFNSHYAPM 563
Query: 563 ISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEE 622
ISD+K + ++ + +G PF P+ QL+ VLP SK+++P+ Y +LM+ +SPI+++YP +
Sbjct: 564 ISDVKKGLNADMNFRLGRPFRPYDQLMGVLPDRSKKIVPKAYHDLMSSPDSPIIDFYPRD 623
Query: 623 FATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYS--NV 680
F D+NGKK +WEAVV IPFIDE +L+ A+ EHLLT EE++RN G L +TYS
Sbjct: 624 FELDMNGKKMEWEAVVKIPFIDERRLLDALATREHLLTPEEKARNGFGVSLKFTYSPDTE 683
Query: 681 NLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLY-VTHFPTLKHV 739
+ + P FP I ++ D + + GL + V+L + FP+LK +
Sbjct: 684 YIYPSSLPGVFPDIPNCRCIQNVF--DLPTMDGLEPYVGLVEGVHLGASALAGFPSLKTL 741
Query: 740 QFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQVADQILGKTIFINYPHLIEIRVQ 799
++ V VFQQ SRNES++I S ++A + LG+ +F+ YP L E V
Sbjct: 742 PHAGQLGFHGVCVFQQESRNESMVITVLDPGSRSSSELAKKKLGQRVFVGYPFLQEALVT 801
Query: 800 AVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSIT--DGYYTK-LGVDIGNTEVLVY 856
V+ D + +G A + KK +G Y++ G IG E +V+
Sbjct: 802 RVS--DELFDYTLPAGEEHPLATPHSDAQIEQWKKKADKIEGIYSRRFGTIIGPVEAMVH 859
Query: 857 GQPVESRKYFFGPRGKVTQQRTFIRSTVT-YAYQ---SAVLNLQQARESLEYKTIDEIFY 912
Q ++ G ++ I T YA Q V+N + E +++ F
Sbjct: 860 VQLLKG--LIKTDSGATVKEFADIPGQETDYALQLVVDEVINPDERFIEREALPVEKEFP 917
Query: 913 PGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFKVQ-QEPDLSDLVHLQDDTVYNYLPS 971
G + F L +YG V T ++ L ++ +EP+ + + Y+P+
Sbjct: 918 EGSRAFFLGEFNYGRP--VHITGHDDGKVNGLIAVIKGREPEFGRERARNAEALSPYMPA 975
Query: 972 YTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDETTK 1031
+ VA L ++PL L++ T S F +D +G +R N+GLN+KF + ++V+G++RR E+
Sbjct: 976 FAVARILQLNPLTLAKITSS-FSVDV--DG-QRVNLGLNLKFEARKQKVLGYSRRSESG- 1030
Query: 1032 KWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQ-GEQRVAQIVSWLKEQ 1090
W ++ + + L++ YM +FP+ ++ + +D Y D +P ++ +I +WLKE
Sbjct: 1031 -WEFSAKAIGLVEQYMLKFPQFIAGIQRNPRNDRYQPTDFYPPDIALDKINEIKAWLKEI 1089
Query: 1091 PHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVEKQITLFVKPNKLYIPKPTLDKLCP-D 1149
E P A +D+ VV LIE D + V+ Q + K + IP+ L L P D
Sbjct: 1090 ESKNFERVPLEAEQLDSDVVKLIEQDAD--QLVKTQPPMEAKKIR-DIPRSAL--LRPAD 1144
Query: 1150 PDTK-----FKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVK 1204
+ + FKL DRVV +D VP+ RGT++G+ + T + DVVFD F G
Sbjct: 1145 VEHRLGNQTFKLGDRVVYAQDSGKVPIATRGTVVGLTR--TPRAILLDVVFDVAFMSGTT 1202
Query: 1205 I--RCSESRGYRMPAQAMINLSY 1225
+ RCS RG + A +++NLSY
Sbjct: 1203 LGDRCSPFRGQTVLASSVLNLSY 1225
Score = 440 (159.9 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 82/129 (63%), Positives = 104/129 (80%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKFFR++SERYP +S ++ E +IPEFDNLYLDMNGIIHNC+H + + P FR+TE ++
Sbjct: 1 MGVPKFFRWLSERYPAISMLIAENRIPEFDNLYLDMNGIIHNCTHKDSDSPTFRMTEDKM 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F IF+YIE L+ I+PKKLFFMA+DGVAPRAKMNQQR RRFR+A +AE ++KA +G
Sbjct: 61 FIAIFNYIEHLYGKIKPKKLFFMAVDGVAPRAKMNQQRARRFRTALDAEQAKEKAIAQGI 120
Query: 121 RLPTEKRFD 129
+P E FD
Sbjct: 121 EMPKEDPFD 129
Score = 64 (27.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 1058 KDHSSDDIYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAV-VDAKVVSLIEHA 1116
KD +I L P +GE ++ + + K QP VR C + D ++ L+ H
Sbjct: 159 KDWQGVEIVLSGHEVPGEGEHKIMEYIRHAKAQPGYDPNVRHCLYGLDADLIMLGLLSHD 218
Query: 1117 VDTCEKVEKQIT 1128
C + +++T
Sbjct: 219 PHFC-LLREEVT 229
>POMBASE|SPAC17A5.14 [details] [associations]
symbol:exo2 "exonuclease II Exo2" species:4896
"Schizosaccharomyces pombe" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0000741
"karyogamy" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IDA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IDA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 PomBase:SPAC17A5.14 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 GO:GO:0000184 GenomeReviews:CU329670_GR GO:GO:0000287
GO:GO:0003723 GO:GO:0000932 GO:GO:0006402 GO:GO:0005874
GO:GO:0006364 GO:GO:0000741 eggNOG:COG5049 KO:K12618 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 EMBL:L35232
PIR:S78457 RefSeq:NP_593482.1 STRING:P40383
EnsemblFungi:SPAC17A5.14.1 GeneID:2542204 KEGG:spo:SPAC17A5.14
HOGENOM:HOG000160331 OrthoDB:EOG4PP1R0 NextBio:20803274
Uniprot:P40383
Length = 1328
Score = 939 (335.6 bits), Expect = 2.9e-172, Sum P(3) = 2.9e-172
Identities = 250/802 (31%), Positives = 408/802 (50%)
Query: 499 NFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHH 558
N +F Q K DYY K+ ++ E L+ AE Y+ +QW L YYY GC SW WYY +H
Sbjct: 488 NVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQWVLFYYYRGCQSWGWYYNYH 547
Query: 559 YAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEY 618
+AP ISD+ + + ++MG PF PF+QL+AVLPA S+ L+P +++LM SPI+++
Sbjct: 548 FAPKISDVLKGLDVKIDFKMGTPFRPFEQLMAVLPARSQALVPPCFRDLMVNSESPIIDF 607
Query: 619 YPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYS 678
YPE FA D NGK WEAVV+IPFIDE +LI A+ + + LT+EER RN V++ +
Sbjct: 608 YPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEERKRNSFNAPTVFSLA 667
Query: 679 N--VNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLY-VTHFPT 735
+ + P FP + ++KP + + GLC V L + + FP+
Sbjct: 668 EDYTSFYPSSLPSLFPDL-VTRCIQKPYSLPSM--EGKEYLVGLCPGVFLGAFGMVGFPS 724
Query: 736 LKHVQFTHKIENAKVKVFQQPSRNESIII-VQDKVQVPSLKQVADQILGKTIFINYPHLI 794
++ ++ + VF SRN S+I+ V+D + +Q+A Q +GK IF+++P+L
Sbjct: 725 FHTLKHKAELVYHGINVFGNESRNPSVIVNVEDVKSALTSEQIAMQYVGKRIFVDWPYLR 784
Query: 795 EIRVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKK---SITDGYYTKLGVDIGNT 851
E V++ A +S + NS + +R +++ + Q +K I + Y + GV G+
Sbjct: 785 EAYVES-AMDESYMYLASNS-TIEKRDLAEIEKS-QWGRKCSHKIRE-YSKRFGVLFGDI 840
Query: 852 EVLVYGQPVESRKYFF-GPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESLEYKTIDEI 910
+L+ +P++ +Y G K+ + + ++ + E E ++
Sbjct: 841 SLLLQVRPIKGLEYTREGALVKIFNESVLEDYPAQLVVEKIAIDDPRFTER-EAPPVEVE 899
Query: 911 FYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLP 970
+ PG + F L +YG I+ K+ I LS + ++ + Y P
Sbjct: 900 YPPGTKAFHLGEYNYGRPA-QITGCKDNKLIIWLSTAPGLDAQWGRVLVNDSKSKEKYYP 958
Query: 971 SYTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDETT 1030
SY VA L+I PLLLS+ T S F+I + G KR NIGLN+KF +N++V+GF+R+ +T
Sbjct: 959 SYIVAKLLNIHPLLLSKITSS-FLISN---GTKRENIGLNLKFDARNQKVLGFSRK--ST 1012
Query: 1031 KKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGEQRVAQIVSWLKEQ 1090
K W ++ + V L+K Y+ FP++F L H++ D D FP Q++A + W+KE+
Sbjct: 1013 KGWEFSNKTVALVKEYINTFPQLFNILTTHATKDNLTVKDCFPKDDTQQLAAVKHWIKEK 1072
Query: 1091 PHAKAEVRPCGAAVVDAKVVSLIEH---AVDTCEKVEKQITLFVKPN-KLYIPKPTLDKL 1146
+D+ ++ LIE +D+ +V K++ F P L P T L
Sbjct: 1073 GINSLTRVSLDEDALDSDIIKLIEEKASTIDSTYQVPKKV--FGVPRYALLKPSQTRGIL 1130
Query: 1147 CPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKI- 1205
+F L DRVV ++D VP+ GT++GI+ DVVFD PF G +
Sbjct: 1131 ---HSQEFALGDRVVYVQDSGKVPIAAYGTVVGIMLHHL------DVVFDLPFMSGTTLD 1181
Query: 1206 -RCSESRGYRMPAQAMINLSYGERLCGNSNPHVKNINVMQSRGERNTNYAQVTRQPQRTT 1264
RCS G ++ ++N++ + + + NV + + T+ VT+ P +T
Sbjct: 1182 GRCSPYHGMQVEVSMVLNVTNPQFVVNTRAGKNRKTNVSANNVSQGTDSRLVTK-PT-ST 1239
Query: 1265 FYKENAPLVNSNLQVTSPYHVK 1286
F +P +S++ +H K
Sbjct: 1240 FPSPPSP-PSSSVWNKREHHPK 1260
Score = 808 (289.5 bits), Expect = 2.9e-172, Sum P(3) = 2.9e-172
Identities = 154/295 (52%), Positives = 208/295 (70%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PKKL +MA+DG APRAKMNQQR RRFR+AK+A KA+ GE P E++FDSNCITPG
Sbjct: 77 PKKLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGEDFP-EEQFDSNCITPG 135
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM R+ +QL YF+ K+T D W++ + VI SGH+ PGEGEHKIM+YIR
Sbjct: 136 TTFMERVSRQLYYFIHKKVTNDSQWQN---------IEVIFSGHDCPGEGEHKIMEYIRT 186
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K++P YNPN RHCLYGLDADLIMLGL +H+P+F LLREEV F S ++
Sbjct: 187 QKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNRSKELA---HQ 243
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
KF+LLHLSL+R+YLE EF + + +F + +E I+DD++L+ F +GNDF+P+LP LHI
Sbjct: 244 KFYLLHLSLLREYLEFEFQECRS--TFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHI 301
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
GAL L++ +Y++V+P+ GYINE G +N+ R E L +L +F+ E F+ + ++
Sbjct: 302 NEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFKAEVSE 356
Score = 404 (147.3 bits), Expect = 1.1e-129, Sum P(3) = 1.1e-129
Identities = 75/129 (58%), Positives = 99/129 (76%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MG+PKFFR++SERYP S+++ +IPEFDNLYLDMNGI+HNC+H ND+ + E+++
Sbjct: 1 MGIPKFFRWMSERYPLCSQLIENDRIPEFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEM 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ IF+YIE LF I+PKKL +MA+DG APRAKMNQQR RRFR+AK+A KA+ GE
Sbjct: 61 YIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGE 120
Query: 121 RLPTEKRFD 129
P E++FD
Sbjct: 121 DFP-EEQFD 128
Score = 52 (23.4 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 1073 PHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAV-VDAKVVSLIEHAVDTCEKVEKQIT 1128
P +GE ++ + + K QP R C + D ++ L+ H C + +++T
Sbjct: 173 PGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFC-LLREEVT 228
Score = 49 (22.3 bits), Expect = 2.5e-76, Sum P(3) = 2.5e-76
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 1433 VEEITNGTQTITMNDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEV 1489
++E T + D + + +R N FN P++ L + + P S FP++
Sbjct: 632 IDE-TRLIDALASKDKFLTEEERKRNSFNAPTVFSLAEDYTSFYPSSLP--SLFPDL 685
Score = 47 (21.6 bits), Expect = 2.9e-172, Sum P(3) = 2.9e-172
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 420 SFDFEQF-REKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDY 471
SFDF ++ E DI+ + G+ F + S+E D +A I + D +
Sbjct: 367 SFDFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFIDFSANISSVDQRF 419
Score = 43 (20.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 122 LPTEKRFDFITLKFCFPK 139
L T D +T+K CFPK
Sbjct: 1039 LTTHATKDNLTVKDCFPK 1056
Score = 41 (19.5 bits), Expect = 1.7e-91, Sum P(3) = 1.7e-91
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 363 LIGNDFIPNLPDLHI-INGAL 382
LI ND IP +L++ +NG L
Sbjct: 20 LIENDRIPEFDNLYLDMNGIL 40
Score = 38 (18.4 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 1494 SPSDNGGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHL 1545
S + N G + P F +T N + E +N F + + + P +
Sbjct: 355 SETKNNGNSDKPSFDFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFI 406
>SGD|S000003141 [details] [associations]
symbol:XRN1 "Evolutionarily-conserved 5'-3' exonuclease
component of cytoplasmic p" species:4932 "Saccharomyces cerevisiae"
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA;TAS]
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0004536
"deoxyribonuclease activity" evidence=TAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000741 "karyogamy" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 SGD:S000003141 GO:GO:0005829 GO:GO:0048471
GO:GO:0000184 EMBL:BK006941 GO:GO:0003723 GO:GO:0000932
GO:GO:0000956 GO:GO:0005874 GO:GO:0004536 GO:GO:0006364
GO:GO:0007089 GO:GO:0000741 EMBL:X84705 GO:GO:0070651
Reactome:REACT_83470 eggNOG:COG5049 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000160331
OrthoDB:EOG4PP1R0 EMBL:M90097 EMBL:X54717 EMBL:M58367 EMBL:M36725
EMBL:X61181 EMBL:Z72695 PIR:S13743 RefSeq:NP_011342.1
ProteinModelPortal:P22147 SMR:P22147 DIP:DIP-656N IntAct:P22147
MINT:MINT-414332 STRING:P22147 PaxDb:P22147 PeptideAtlas:P22147
EnsemblFungi:YGL173C GeneID:852702 KEGG:sce:YGL173C CYGD:YGL173c
GeneTree:ENSGT00670000098080 OMA:NIFAYIE Reactome:REACT_78815
NextBio:972050 Genevestigator:P22147 GermOnline:YGL173C
Uniprot:P22147
Length = 1528
Score = 837 (299.7 bits), Expect = 2.9e-157, Sum P(3) = 2.9e-157
Identities = 234/790 (29%), Positives = 380/790 (48%)
Query: 497 RTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYP 556
+T + F + K +YYH KL + + E +RD A+ Y+ +QW L+YYY GC SWSWYYP
Sbjct: 501 KTIYNERFERWKHEYYHDKLKFTTDSEEKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYP 560
Query: 557 HHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPIL 616
HHYAP ISD+ ++++++ +PF PFQQL+AVLP SK L+P ++ LM E SPI
Sbjct: 561 HHYAPRISDLAKGLDQDIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIH 620
Query: 617 EYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYT 676
++YP E D NGK DWEAVVLI F+DE +LI+AM L+ EE++RN+ G L+Y+
Sbjct: 621 DFYPAEVQLDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIYS 680
Query: 677 YS-NV-NLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKL-YVTHF 733
++ V NL + F I NH VEK I + +++R GL + L + F
Sbjct: 681 FNPQVDNLYKSPLGGIFSDIEHNHCVEKEYIT--IPLDSSEIRYGLLPNAKLGAEMLAGF 738
Query: 734 PTLKHVQFTHKIENAKVKVFQQPSRNESIII-VQD--KVQVPSLKQVADQILGKTIFINY 790
PTL + FT +E + VFQQPS+ +S+++ + D K +L+ + + L K I+ +
Sbjct: 739 PTLLSLPFTSSLEYNETMVFQQPSKQQSMVLQITDIYKTNNVTLEDFSKRHLNKVIYTRW 798
Query: 791 PHLIEIRVQAVATKDSRISF-DKNSGPVFERAAK--DMQDA--FQLSKKSITDGYYTKLG 845
P+L E ++ ++ + + + N F K + QD F K S+ Y +
Sbjct: 799 PYLRESKLVSLTDGKTIYEYQESNDKKKFGFITKPAETQDKKLFNSLKNSMLRMYAKQKA 858
Query: 846 VDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESLEYK 905
V IG E + PV G + +TF + Y Q V ++ E + +
Sbjct: 859 VKIGPMEAIATVFPVTGLVRD-SDGGYI---KTFSPTPDYYPLQLVVESVVNEDERYKER 914
Query: 906 ---TIDEIFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFK-VQQEPDLSDLVHLQ 961
I+E F + L + YG + + I + K + EP +
Sbjct: 915 GPIPIEEEFPLNSKVIFLGDYAYGGETTIDGYSSDRRLKITVEKKFLDSEPTIGKERLQM 974
Query: 962 DDTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVV 1021
D Y PSY V+ + + PL LS+ T I D+T K N+G+ +KF ++++V+
Sbjct: 975 DHQAVKYYPSYIVSKNMHLHPLFLSKITSKFMITDAT---GKHINVGIPVKFEARHQKVL 1031
Query: 1022 GFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGEQRVA 1081
G+ RR+ + W Y+ + L+K Y + FP+ F F +DI + +D+FP +
Sbjct: 1032 GYARRNP--RGWEYSNLTLNLLKEYRQTFPDFF-FRLSKVGNDIPVLEDLFPDTSTKDAM 1088
Query: 1082 QIVS----WLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE--KQITLFVKPNK 1135
++ WLK V ++ + ++ +H + +E ++ L P +
Sbjct: 1089 NLLDGIKQWLKYVSSKFIAVSLESDSLTKTSIAAVEDHIMKYAANIEGHERKQLAKVPRE 1148
Query: 1136 LYI-PKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVV 1194
+ P+ + L KF L DRVV I+D VP+ +GT++G +S V+
Sbjct: 1149 AVLNPRSSFALL---RSQKFDLGDRVVYIQDSGKVPIFSKGTVVGYTTLSSSLSIQ--VL 1203
Query: 1195 FDKPFPHGVKI--RCSESRGYRMPAQAMINLSYGERLCGNSNPHVKNINVMQSRGERNTN 1252
FD G R +RG + A ++N++ + +S K + + RN N
Sbjct: 1204 FDHEIVAGNNFGGRLRTNRGLGLDASFLLNIT-NRQFIYHSKASKKALEKKKQSNNRNNN 1262
Query: 1253 YAQVTRQPQR 1262
+ P +
Sbjct: 1263 TKTAHKTPSK 1272
Score = 803 (287.7 bits), Expect = 2.9e-157, Sum P(3) = 2.9e-157
Identities = 158/311 (50%), Positives = 219/311 (70%)
Query: 130 FITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRF 189
F T+K PKK+F+MAIDGVAPRAKMNQQR RRFR+A +AE +KA E G+ +P + F
Sbjct: 72 FQTIK---PKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGDEIPKGEPF 128
Query: 190 DSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEH 249
DSN ITPGT FM +L + L+YF+ KI+ D W++ V +I SGHE PGEGEH
Sbjct: 129 DSNSITPGTEFMAKLTKNLQYFIHDKISNDSKWRE---------VQIIFSGHEVPGEGEH 179
Query: 250 KIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGS 309
KIM++IR++KS+ D+N N RHC+YGLDADLIMLGL TH P+F+LLREEV F ++++ S
Sbjct: 180 KIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEVTFGRRNSEKKS 239
Query: 310 QIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFI 369
E F+LLHLSL+R+Y+ELEF ++ + + F ++ E I+DD++L+ F+IGNDF+
Sbjct: 240 L----EHQNFYLLHLSLLREYMELEFKEIADE--MQFEYNFERILDDFILVMFVIGNDFL 293
Query: 370 PNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
PNLPDLH+ GA P+L + ++E L DGYINE G +NLKR +L L+ F+ F +
Sbjct: 294 PNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEKD 353
Query: 430 YADIQYLEGKM 440
D+++ ++
Sbjct: 354 DIDVEWFNKQL 364
Score = 424 (154.3 bits), Expect = 2.4e-117, Sum P(3) = 2.4e-117
Identities = 78/129 (60%), Positives = 102/129 (79%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MG+PKFFRYISER+P + +++ QIPEFDNLYLDMN I+HNC+H ND+D R+TE+++
Sbjct: 1 MGIPKFFRYISERWPMILQLIEGTQIPEFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEV 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
F I YI+ LF+ I+PKK+F+MAIDGVAPRAKMNQQR RRFR+A +AE +KA E G+
Sbjct: 61 FAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGD 120
Query: 121 RLPTEKRFD 129
+P + FD
Sbjct: 121 EIPKGEPFD 129
Score = 45 (20.9 bits), Expect = 6.4e-32, Sum P(4) = 6.4e-32
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 1073 PHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
P +GE ++ + LK Q R C + DA ++ L
Sbjct: 174 PGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGL-DADLIML 212
Score = 44 (20.5 bits), Expect = 1.3e-73, Sum P(3) = 1.3e-73
Identities = 33/135 (24%), Positives = 52/135 (38%)
Query: 1388 GGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITN--GTQTITM 1445
G G+P LL +P T + N ET + Q V +IT+ T +T+
Sbjct: 731 GAEMLAGFPTLLSLP------FTSSLEYN--ETMVFQQPSKQQSMVLQITDIYKTNNVTL 782
Query: 1446 NDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNGGRTATP 1505
D +KR N I + ++++ + + TD T + E +N G T
Sbjct: 783 EDF----SKRHLNKV-IYTRWPYLRESKLVSLTDGKTIYEYQE---SNDKKKFGFITKPA 834
Query: 1506 DTSFTTKLTNLFNRS 1520
+T KL N S
Sbjct: 835 ETQ-DKKLFNSLKNS 848
Score = 41 (19.5 bits), Expect = 2.7e-73, Sum P(3) = 2.7e-73
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1614 QQQQTVEPEQNKQAFPP 1630
QQ V PE++K PP
Sbjct: 590 QQLMAVLPERSKNLIPP 606
Score = 39 (18.8 bits), Expect = 2.9e-157, Sum P(3) = 2.9e-157
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 1629 PPHPDQLAQPGDDVTSLIRPQPGP 1652
P HP Q+ P + S+ P P P
Sbjct: 1414 PLHPHQMPYPNMNGMSI--PPPAP 1435
Score = 39 (18.8 bits), Expect = 5.4e-31, Sum P(4) = 5.4e-31
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1495 PSDNGGRTATPDTSFTTKLT-NL---FNRSSSNDTE 1526
P D+ + TP T F KLT NL + SND++
Sbjct: 127 PFDSN--SITPGTEFMAKLTKNLQYFIHDKISNDSK 160
>CGD|CAL0003816 [details] [associations]
symbol:RAT1 species:5476 "Candida albicans" [GO:0004534
"5'-3' exoribonuclease activity" evidence=IGI] [GO:0008017
"microtubule binding" evidence=IGI] [GO:0000150 "recombinase
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0030846 "termination
of RNA polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IEA]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 CGD:CAL0003816 GO:GO:0005634 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0008017 EMBL:AACQ01000005
EMBL:AACQ01000006 GO:GO:0006364 GO:GO:0006353 GO:GO:0000150
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
KO:K12619 RefSeq:XP_722750.1 RefSeq:XP_722895.1 STRING:Q5AMG5
GeneID:3635468 GeneID:3635686 KEGG:cal:CaO19.12150
KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 643 (231.4 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 142/322 (44%), Positives = 201/322 (62%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEV----LEQKAKEK---GE----RLPTE 186
P+K+ +A+DGVAPRAKMNQQR RRFR+AK+AE+ LE + +E+ GE + +
Sbjct: 89 PRKVLMIAVDGVAPRAKMNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGK 148
Query: 187 KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGE 246
K++DSN ITPGTPFM RL + LRY+V K+++D W ++ VI+S PGE
Sbjct: 149 KQWDSNAITPGTPFMDRLAEALRYWVAYKLSSDP---------GWANLQVIISDATVPGE 199
Query: 247 GEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEV------KF 300
GEHK+M +IR +S P Y+PN +HC+YGLDADLI LGL THEP+F +LRE+V KF
Sbjct: 200 GEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFASQDKKF 259
Query: 301 NTK-----SNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIID 355
K +N G + ++ F LH++++R+YL++E L P +SFPF +E ID
Sbjct: 260 TIKDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVE---LFTPR-MSFPFELERAID 315
Query: 356 DWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFL 415
DWV + F GNDF+P+LP L + + + L + ++ LP L Y+ G LNLK E +
Sbjct: 316 DWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLM 375
Query: 416 TKLASFDFEQFREKYADIQYLE 437
+ LA + E F+ K+A Q E
Sbjct: 376 SNLAYKESEIFKNKHAAEQRRE 397
Score = 410 (149.4 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 75/171 (43%), Positives = 112/171 (65%)
Query: 503 EFGQHKTDY---YHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHY 559
E G +K Y +HY+ D + + RD Y+ I W YYY GC SW+WY+P+HY
Sbjct: 543 EPGYNKRYYEAKFHYQSD--EEIEQTKRDVVRHYVEGIAWVALYYYQGCPSWNWYFPYHY 600
Query: 560 APYISDIKDFSHL---NLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPIL 616
AP+ +D + L +K+++GEPF PF+QL++VLPAAS LP+ +++LM+ +S I+
Sbjct: 601 APFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVFRDLMSNPDSEII 660
Query: 617 EYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
++YPEEF D+NGKK W+ + L+PFIDE +L+ A+ LLT +E+SRN
Sbjct: 661 DFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEKSRN 711
Score = 299 (110.3 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 67/131 (51%), Positives = 86/131 (65%)
Query: 1 MGVPKFFRYISERYP-CLSEVVRE---------YQIP----EFDNLYLDMNGIIHNCSHP 46
MGVP FR++S +YP +S VV E Y+ P E DNLYLDMNGI+H CSHP
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKYENPNPNGEIDNLYLDMNGIVHPCSHP 60
Query: 47 NDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAK 106
P TE ++F DIF Y + + M +P+K+ +A+DGVAPRAKMNQQR RRFR+AK
Sbjct: 61 EHKKPPE--TEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAK 118
Query: 107 EAEVLEQKAKE 117
+AE+ KAK+
Sbjct: 119 DAEL---KAKQ 126
Score = 63 (27.2 bits), Expect = 1.1e-87, Sum P(3) = 1.1e-87
Identities = 29/115 (25%), Positives = 47/115 (40%)
Query: 1343 RTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQ--NSELFSTGGMSFFGYPNLL- 1399
R E N+ + EQ+ + + S P T N L T G + GY NL
Sbjct: 395 RREENNKRRKLAQEQERALKRVYSSQVSKGKDKAPLTADVNMPLMDTSGQNVEGYANLTN 454
Query: 1400 -DIPENKNKLLTGEITANK---------METKPEKATCPQDKEVEEITNGTQTIT 1444
DI +N+ +LT AN +++K + T QD+ + + ++T T
Sbjct: 455 SDIVQNR-AILTKANLANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTT 508
Score = 45 (20.9 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 35/186 (18%), Positives = 62/186 (33%)
Query: 1390 MSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQTITMNDLY 1449
+ F LLD + K +LLT + + + E P +K + + N++
Sbjct: 684 LPFIDEKRLLDAVQKKYELLTPDEKSRNTNKEAELFISPANKNFSKFSEKLYKENENEVT 743
Query: 1450 QSANKRSENG-------FNIPSISDL-IKQN---NITAKTDYPTTSTFPEVKYTNSPSDN 1498
K +G FN + + + + N+ + FP+ K S N
Sbjct: 744 FKYAKSGLSGKIFKLGTFNPEGVFNFPLNEGYMPNVNNSDYFQAIYHFPKTKTGKSMILN 803
Query: 1499 GGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAI--SAMVQQSPHLLEKNKELNTPS 1556
G P + K L+ N+ F + S + + P E K +
Sbjct: 804 GHIAPLPALTTADKNDLLYQLDKFNNRRNGGRFNSTLDNSDYINKGPAGKELYKTYSMRR 863
Query: 1557 GGELSF 1562
GG S+
Sbjct: 864 GGYRSY 869
Score = 41 (19.5 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 49 NDPHFRITEKQIF 61
++PHFR+ + +F
Sbjct: 240 HEPHFRVLREDVF 252
Score = 39 (18.8 bits), Expect = 3.6e-85, Sum P(3) = 3.6e-85
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 409 KRFEKFLTKLASFDFEQFREKYADIQYLEGKMGK 442
K F KF KL + + KYA L GK+ K
Sbjct: 725 KNFSKFSEKLYKENENEVTFKYAK-SGLSGKIFK 757
Score = 38 (18.4 bits), Expect = 6.8e-20, Sum P(3) = 6.8e-20
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
+ + D P +GE ++ + + P + C + DA ++ L
Sbjct: 189 VIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGL-DADLIFL 235
>UNIPROTKB|Q5AMG5 [details] [associations]
symbol:RAT1 "5'-3' exoribonuclease 2" species:237561
"Candida albicans SC5314" [GO:0000150 "recombinase activity"
evidence=IGI] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0008017 "microtubule binding" evidence=IGI] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 CGD:CAL0003816
GO:GO:0005634 GO:GO:0006355 GO:GO:0006397 GO:GO:0003676
GO:GO:0008017 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006364
GO:GO:0006353 GO:GO:0000150 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_722750.1
RefSeq:XP_722895.1 STRING:Q5AMG5 GeneID:3635468 GeneID:3635686
KEGG:cal:CaO19.12150 KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 643 (231.4 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 142/322 (44%), Positives = 201/322 (62%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEV----LEQKAKEK---GE----RLPTE 186
P+K+ +A+DGVAPRAKMNQQR RRFR+AK+AE+ LE + +E+ GE + +
Sbjct: 89 PRKVLMIAVDGVAPRAKMNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGK 148
Query: 187 KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGE 246
K++DSN ITPGTPFM RL + LRY+V K+++D W ++ VI+S PGE
Sbjct: 149 KQWDSNAITPGTPFMDRLAEALRYWVAYKLSSDP---------GWANLQVIISDATVPGE 199
Query: 247 GEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEV------KF 300
GEHK+M +IR +S P Y+PN +HC+YGLDADLI LGL THEP+F +LRE+V KF
Sbjct: 200 GEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFASQDKKF 259
Query: 301 NTK-----SNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIID 355
K +N G + ++ F LH++++R+YL++E L P +SFPF +E ID
Sbjct: 260 TIKDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVE---LFTPR-MSFPFELERAID 315
Query: 356 DWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFL 415
DWV + F GNDF+P+LP L + + + L + ++ LP L Y+ G LNLK E +
Sbjct: 316 DWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLM 375
Query: 416 TKLASFDFEQFREKYADIQYLE 437
+ LA + E F+ K+A Q E
Sbjct: 376 SNLAYKESEIFKNKHAAEQRRE 397
Score = 410 (149.4 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 75/171 (43%), Positives = 112/171 (65%)
Query: 503 EFGQHKTDY---YHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHY 559
E G +K Y +HY+ D + + RD Y+ I W YYY GC SW+WY+P+HY
Sbjct: 543 EPGYNKRYYEAKFHYQSD--EEIEQTKRDVVRHYVEGIAWVALYYYQGCPSWNWYFPYHY 600
Query: 560 APYISDIKDFSHL---NLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPIL 616
AP+ +D + L +K+++GEPF PF+QL++VLPAAS LP+ +++LM+ +S I+
Sbjct: 601 APFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVFRDLMSNPDSEII 660
Query: 617 EYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
++YPEEF D+NGKK W+ + L+PFIDE +L+ A+ LLT +E+SRN
Sbjct: 661 DFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEKSRN 711
Score = 299 (110.3 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 67/131 (51%), Positives = 86/131 (65%)
Query: 1 MGVPKFFRYISERYP-CLSEVVRE---------YQIP----EFDNLYLDMNGIIHNCSHP 46
MGVP FR++S +YP +S VV E Y+ P E DNLYLDMNGI+H CSHP
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKYENPNPNGEIDNLYLDMNGIVHPCSHP 60
Query: 47 NDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAK 106
P TE ++F DIF Y + + M +P+K+ +A+DGVAPRAKMNQQR RRFR+AK
Sbjct: 61 EHKKPPE--TEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAK 118
Query: 107 EAEVLEQKAKE 117
+AE+ KAK+
Sbjct: 119 DAEL---KAKQ 126
Score = 63 (27.2 bits), Expect = 1.1e-87, Sum P(3) = 1.1e-87
Identities = 29/115 (25%), Positives = 47/115 (40%)
Query: 1343 RTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQ--NSELFSTGGMSFFGYPNLL- 1399
R E N+ + EQ+ + + S P T N L T G + GY NL
Sbjct: 395 RREENNKRRKLAQEQERALKRVYSSQVSKGKDKAPLTADVNMPLMDTSGQNVEGYANLTN 454
Query: 1400 -DIPENKNKLLTGEITANK---------METKPEKATCPQDKEVEEITNGTQTIT 1444
DI +N+ +LT AN +++K + T QD+ + + ++T T
Sbjct: 455 SDIVQNR-AILTKANLANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTT 508
Score = 45 (20.9 bits), Expect = 2.0e-124, Sum P(4) = 2.0e-124
Identities = 35/186 (18%), Positives = 62/186 (33%)
Query: 1390 MSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQTITMNDLY 1449
+ F LLD + K +LLT + + + E P +K + + N++
Sbjct: 684 LPFIDEKRLLDAVQKKYELLTPDEKSRNTNKEAELFISPANKNFSKFSEKLYKENENEVT 743
Query: 1450 QSANKRSENG-------FNIPSISDL-IKQN---NITAKTDYPTTSTFPEVKYTNSPSDN 1498
K +G FN + + + + N+ + FP+ K S N
Sbjct: 744 FKYAKSGLSGKIFKLGTFNPEGVFNFPLNEGYMPNVNNSDYFQAIYHFPKTKTGKSMILN 803
Query: 1499 GGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAI--SAMVQQSPHLLEKNKELNTPS 1556
G P + K L+ N+ F + S + + P E K +
Sbjct: 804 GHIAPLPALTTADKNDLLYQLDKFNNRRNGGRFNSTLDNSDYINKGPAGKELYKTYSMRR 863
Query: 1557 GGELSF 1562
GG S+
Sbjct: 864 GGYRSY 869
Score = 41 (19.5 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 49 NDPHFRITEKQIF 61
++PHFR+ + +F
Sbjct: 240 HEPHFRVLREDVF 252
Score = 39 (18.8 bits), Expect = 3.6e-85, Sum P(3) = 3.6e-85
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 409 KRFEKFLTKLASFDFEQFREKYADIQYLEGKMGK 442
K F KF KL + + KYA L GK+ K
Sbjct: 725 KNFSKFSEKLYKENENEVTFKYAK-SGLSGKIFK 757
Score = 38 (18.4 bits), Expect = 6.8e-20, Sum P(3) = 6.8e-20
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
+ + D P +GE ++ + + P + C + DA ++ L
Sbjct: 189 VIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGL-DADLIFL 235
>POMBASE|SPAC26A3.12c [details] [associations]
symbol:dhp1 "5'-3' exoribonuclease Dhp1" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004534 "5'-3' exoribonuclease
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IGI;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=ISO] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239
PomBase:SPAC26A3.12c GO:GO:0005634 EMBL:CU329670 GO:GO:0070317
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0003676
GO:GO:0000070 GO:GO:0006995 GO:GO:0006364 PDB:3FQD PDBsum:3FQD
GO:GO:0030846 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:D17752 PIR:S43891
RefSeq:NP_594155.1 DIP:DIP-59743N STRING:P40848
EnsemblFungi:SPAC26A3.12c.1 GeneID:2542674 KEGG:spo:SPAC26A3.12c
OMA:INSEPAL OrthoDB:EOG43NBMS NextBio:20803722 Uniprot:P40848
Length = 991
Score = 631 (227.2 bits), Expect = 1.4e-123, Sum P(4) = 1.4e-123
Identities = 143/315 (45%), Positives = 199/315 (63%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQK-------AKEKG----ERLPTE 186
P++L F+AIDGVAPRAKMNQQR RRFRS++EA + E++ AK++G E +
Sbjct: 95 PRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKK 154
Query: 187 KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGE 246
K +DSNCITPGTPFM L + LRY++ K+ +D W++ V ILS PGE
Sbjct: 155 KSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRN---------VRFILSDASVPGE 205
Query: 247 GEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKF---NTK 303
GEHKIM++IR + KP+Y+PN H +YGLDADLIMLGL THEP+F +LRE+V F +TK
Sbjct: 206 GEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTK 265
Query: 304 SNK----GGSQIVTPEETK-------FFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIEN 352
K G ++ ET F L++S++R+YLE+E L P L FPF +E
Sbjct: 266 KTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVE---LYVPN-LPFPFDLER 321
Query: 353 IIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFE 412
IDDWV F +GNDF+P+LP L I +GA+ L ++++ LP + GY+ G +NL R E
Sbjct: 322 AIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAE 381
Query: 413 KFLTKLASFDFEQFR 427
L+ + + + + F+
Sbjct: 382 VILSAVGNQEDDIFK 396
Score = 462 (167.7 bits), Expect = 1.4e-123, Sum P(4) = 1.4e-123
Identities = 80/169 (47%), Positives = 114/169 (67%)
Query: 507 HKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDI 566
++ YY K + E +R+ + Y+ + W L YYY GC SW+WYYP+HYAP+ +D
Sbjct: 591 YRERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPFAADF 650
Query: 567 KDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
KD + +++K+E+ +PF P++QLL VLPAASK LPE Q LMT ENS I+++YPE F D
Sbjct: 651 KDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPENFTID 710
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVY 675
LNGKK +W+ V L+PFIDE +L+ A+ + LT+EE RN G L++
Sbjct: 711 LNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLF 759
Score = 260 (96.6 bits), Expect = 1.4e-123, Sum P(4) = 1.4e-123
Identities = 53/110 (48%), Positives = 75/110 (68%)
Query: 11 SERYPCLSEVVREYQIP-----EFDNLYLDMNGIIHNCSHPNDND-PHFRITEKQIFQDI 64
+E+ P +E+ + +P E DNLYLDMNGI+H CSHP D P TE ++ +
Sbjct: 26 TEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPE---TEDEMMVAV 82
Query: 65 FHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQK 114
F Y + + M++P++L F+AIDGVAPRAKMNQQR RRFRS++EA + E++
Sbjct: 83 FEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEE 132
Score = 44 (20.5 bits), Expect = 7.6e-38, Sum P(3) = 7.6e-38
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 17 LSEVVREYQI-PEFD-NLYLDMNGIIHNCSHPN--DNDPHFRITEKQIF 61
+ E +R ++ PE+D N + + G+ + ++PHFR+ + +F
Sbjct: 210 IMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVF 258
Score = 42 (19.8 bits), Expect = 1.4e-123, Sum P(4) = 1.4e-123
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1 MGVPKFFRYISERY 14
MGVP FR +S ++
Sbjct: 1 MGVPALFRLLSRKF 14
Score = 40 (19.1 bits), Expect = 2.2e-79, Sum P(4) = 2.2e-79
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 1741 VPPDTTEDLEERADSYLAKLLRLTRAHNLGAPDYTF 1776
+ PD E + E Y+ L + + G P +T+
Sbjct: 602 ISPDEPEKIREAVKHYVHGLCWVLLYYYQGCPSWTW 637
Score = 39 (18.8 bits), Expect = 2.7e-79, Sum P(4) = 2.7e-79
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1823 TQIYPTAPNTKSASDVTRAETKTAVAAQPAPQNTEVDQTDKNT 1865
TQ ++KS S T+ KT PAP + V+ ++K +
Sbjct: 436 TQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL-VNLSEKTS 477
Score = 38 (18.4 bits), Expect = 3.5e-79, Sum P(4) = 3.5e-79
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1742 PPDTTEDLEERADSYLAKLLRLTRAHNLGA 1771
PP T+ ++ A L L T +LGA
Sbjct: 454 PPKKTQKIDAPAPVDLVNLSEKTSNRSLGA 483
Score = 38 (18.4 bits), Expect = 3.5e-79, Sum P(4) = 3.5e-79
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 1533 RAISAMVQQSPHLLEKNKELNTPSGGELSFEEKHSM 1568
R ++A+ + P L E+ + N L E H M
Sbjct: 731 RLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPM 766
>DICTYBASE|DDB_G0276137 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0276137 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 RefSeq:XP_643245.1
ProteinModelPortal:Q75JF5 STRING:Q75JF5 EnsemblProtists:DDB0237529
GeneID:8620288 KEGG:ddi:DDB_G0276137 InParanoid:Q75JF5 OMA:GMPYGAM
Uniprot:Q75JF5
Length = 1749
Score = 774 (277.5 bits), Expect = 1.3e-113, Sum P(6) = 1.3e-113
Identities = 197/608 (32%), Positives = 318/608 (52%)
Query: 231 WKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPY 290
W++V VI SG E PGEGEHKI+DYIR K+ PD++ N HCLYGLDADLI+LGL THEP
Sbjct: 159 WREVRVIFSGPENPGEGEHKIIDYIRKNKASPDWDANQSHCLYGLDADLILLGLITHEPN 218
Query: 291 FSLLREEVKFNTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSI 350
FS+LREE+ F T + F LLH+SL+R+YL+LE L+ L F + +
Sbjct: 219 FSILREEISFKP----------TKRQLDFQLLHISLLREYLDLE---LRNDD-LEFGYDL 264
Query: 351 ENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKR 410
E IIDD++L+ GNDF+P+LP L I G L ++++Y+ LP+L GY+ EG ++L+R
Sbjct: 265 ERIIDDFILIMIFFGNDFLPHLPFLEISKGGLNSIFELYKSSLPSLGGYLTEGATIDLER 324
Query: 411 FEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDD 470
+ F L F+ +Q + + E + K +V + ++ D L + +
Sbjct: 325 LQHFFKFLQKFEKKQ---QQGIMGSTEEDLDDKKVEVAELVEDSVLEHD--GLDEEAKKE 379
Query: 471 YDDGTXXXXXXXXXXXXXXXXXXXXWRTNFFSEFGQHKTDYYH-YKLDYAKVTNEV--LR 527
++ +E + YY Y ++ +E+ +
Sbjct: 380 FER-LAMERLKSHFPVSDSEDGEEDPDEQLVNELYNVENSYYRQYFNEFPNTLDEIKAFK 438
Query: 528 DQAEC-YIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQ 586
++ Y+ + W L+YY+NGC+SW W+YP +YAP D + L++ ++ GEP PFQ
Sbjct: 439 EKVVLSYVEGLVWVLNYYHNGCISWVWFYPFYYAPLAIDFNNIPDLHIDFQPGEPITPFQ 498
Query: 587 QLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEV 646
QLL+VLP S +L+P+ YQ LM SPI+++YP EF D ++ + + FID
Sbjct: 499 QLLSVLPPQSVDLIPKSYQTLMLDLFSPIIDFYPVEFEIDTKDPHY-FDGIAELGFIDHQ 557
Query: 647 KLIKAMDAVEHLL--------TDEERSRNR-HGPMLVYTYSNVNLGTALAPD--YFPAIN 695
+L+ A +++ L TDEE +RN +++Y ++V+ +P+ F I
Sbjct: 558 RLLDATASIKKSLAQSGQKVFTDEEEARNSIKNAVIIYHDADVDQFVK-SPNSNVFKDIE 616
Query: 696 ENHAVEKPLYRDDIYVHPNKLRK-GLCQDVNLK--LYVTHFPTLKHVQFTHKIENAKVKV 752
+ A + + + N L C D L + FPT K +QFT K +N+ + V
Sbjct: 617 HSSATTEDIV---LPTFDNPLPHFRYCADQVLTGVQCPSGFPTFKSLQFTWKYQNSVIDV 673
Query: 753 FQQPSRNESIIIV---QDK-VQVPSLKQVAD--QILGKTIFINYPHLIEIRVQAVATKDS 806
+ SR +S+I+V Q K ++ + + ++GK +IN+P+ E ++ + +
Sbjct: 674 WGMMSRKDSLIVVPPHQSKQYDCNNIDEFSKLKSLIGKKCYINWPYHQEGKILYFSCSNR 733
Query: 807 RISFDKNS 814
++ F K +
Sbjct: 734 KL-FSKGT 740
Score = 461 (167.3 bits), Expect = 5.5e-50, Sum P(5) = 5.5e-50
Identities = 101/199 (50%), Positives = 131/199 (65%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P KLF+MAIDGVAPR+K+NQQR RRF S E L+QK +G+ +P E F+ ITPG
Sbjct: 76 PTKLFYMAIDGVAPRSKINQQRQRRFLSVHRDEKLKQKLISEGKPVP-EVIFNRTAITPG 134
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM L + +++++K KI+ D LS W++V VI SG E PGEGEHKI+DYIR
Sbjct: 135 TQFMYNLSESIQFYIKKKISED------LS---WREVRVIFSGPENPGEGEHKIIDYIRK 185
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
K+ PD++ N HCLYGLDADLI+LGL THEP FS+LREE+ F + Q++
Sbjct: 186 NKASPDWDANQSHCLYGLDADLILLGLITHEPNFSILREEISFKPTKRQLDFQLLHISLL 245
Query: 318 KFFLLHLSLMRDYLELEFG 336
+ +L L L D +LEFG
Sbjct: 246 REYL-DLELRND--DLEFG 261
Score = 324 (119.1 bits), Expect = 1.3e-113, Sum P(6) = 1.3e-113
Identities = 62/123 (50%), Positives = 87/123 (70%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVP+FFR++SERYP + + + + PE+DNLYLDMNGIIH CS N +E+++
Sbjct: 1 MGVPRFFRWVSERYPQILQKILDSNPPEYDNLYLDMNGIIHACSQEFANSL-IEFSEEEL 59
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGE 120
+ + +Y++ LF I+P KLF+MAIDGVAPR+K+NQQR RRF S E L+QK +G+
Sbjct: 60 IRQVCNYVDRLFHTIRPTKLFYMAIDGVAPRSKINQQRQRRFLSVHRDEKLKQKLISEGK 119
Query: 121 RLP 123
+P
Sbjct: 120 PVP 122
Score = 124 (48.7 bits), Expect = 1.3e-113, Sum P(6) = 1.3e-113
Identities = 67/273 (24%), Positives = 119/273 (43%)
Query: 804 KDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGYY-TKLGVDIGNTEVLVYGQPVES 862
K +++S + ++ KD D Q S S T GY +KLG + NT +LV+ +
Sbjct: 756 KKTKLSLLRKGINIYYDNEKD--DGKQQSNGSST-GYTASKLGYEDTNT-ILVHINKLVG 811
Query: 863 RKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESLEYKTIDEI-F---YP-GCQC 917
+ P G T++R V Y + V A +S ++ IDE+ F +P G +
Sbjct: 812 VQTM--PNGS-TKKRYSDEEDV-YPIELMVDYDLIATDS-RFEEIDELPFEKRFPIGKKV 866
Query: 918 FALSNPHYGSGGCVISTVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTVASK 977
++G+ G VI+ + ++L KV + H Y P VA
Sbjct: 867 LVTKKQYFGTIGTVINHYDNQ---LQLEIKVPSVKMDMNFGHQVAKKEVEYFPIQHVAKL 923
Query: 978 LSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVVGFTRRDETTK------ 1031
+ + +S+ T +FI + IGLN+KF+ + ++V+G+ R + +
Sbjct: 924 VGTTVSSISQLTAGLFIFKPMVD------IGLNLKFTGRQQQVLGYCRGYDVNRGGNIFH 977
Query: 1032 KWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDD 1064
+W ++++ + LI Y +FP + L S D
Sbjct: 978 QWEFSQEAINLITEYFNKFPLLHQILALFSKPD 1010
Score = 86 (35.3 bits), Expect = 1.3e-113, Sum P(6) = 1.3e-113
Identities = 29/74 (39%), Positives = 35/74 (47%)
Query: 1153 KFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIR--CSES 1210
KF L DRVV+I D +P G GT+ I D DVVFD G + CSE
Sbjct: 1152 KFHLGDRVVSILDKGNLPFGTFGTVASI------QDQKVDVVFDTECFAGNSLDGYCSEK 1205
Query: 1211 RGYRMPAQAMINLS 1224
RG + + NLS
Sbjct: 1206 RGICISKLRLYNLS 1219
Score = 56 (24.8 bits), Expect = 5.1e-113, Sum P(5) = 5.1e-113
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 1614 QQQQTVEPEQNKQAFP-PHPDQLAQPGDDVTSLIRPQPGP 1652
QQ Q +P+Q Q P P P Q QP S PQ P
Sbjct: 1393 QQLQQPKPQQQPQPQPQPQPKQPKQPKQPKQSKQPPQQPP 1432
Score = 54 (24.1 bits), Expect = 1.3e-113, Sum P(6) = 1.3e-113
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 1331 QVNTSSAPKEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATY-SIPTTQNSELFSTGG 1389
Q S P ++P Q I Q+ NK I+ N S P +Q+SE + G
Sbjct: 1420 QPKQSKQPPQQPPQQPQEPIDPEKLRQQTRTNKRLNLIYQNIEQNSFPGSQSSEHNNGDG 1479
Query: 1390 MS 1391
S
Sbjct: 1480 SS 1481
Score = 52 (23.4 bits), Expect = 1.3e-113, Sum P(6) = 1.3e-113
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 1614 QQQQTVEPEQNKQAFPP-HPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQP 1670
Q +Q +P+Q Q P P Q QP TS P P TN + +T+ P
Sbjct: 1690 QPKQPAQPKQAAQTKQPKQPKQSKQPAQQ-TSPTTPNPTT---ETNLNPTIETTSTPP 1743
Score = 49 (22.3 bits), Expect = 2.6e-113, Sum P(6) = 2.6e-113
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 1614 QQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQP 1670
Q QT +P Q KQ P P Q AQ QP T + + TN P
Sbjct: 1681 QAAQTKQPAQPKQ--PAQPKQAAQTKQPKQPKQSKQPAQQTSPTTPNPTTE-TNLNP 1734
Score = 49 (22.3 bits), Expect = 1.0e-27, Sum P(5) = 1.0e-27
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 117 EKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAK-EAEVLEQK 175
E+ + LP EKRF I K KK +F I V Q + S K + Q
Sbjct: 849 EEIDELPFEKRFP-IGKKVLVTKKQYFGTIGTVINHYDNQLQLEIKVPSVKMDMNFGHQV 907
Query: 176 AKEKGERLPTE 186
AK++ E P +
Sbjct: 908 AKKEVEYFPIQ 918
Score = 48 (22.0 bits), Expect = 3.3e-113, Sum P(6) = 3.3e-113
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 1614 QQQQTVEPEQNKQAFPPHPDQLAQ 1637
Q +QT +P Q KQ P P Q AQ
Sbjct: 1663 QPKQTKQPAQPKQ--PAQPKQAAQ 1684
Score = 45 (20.9 bits), Expect = 3.3e-37, Sum P(5) = 3.3e-37
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 700 VEKPLYRDDIYVHPNKLRKGLC--QDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPS 757
VE P Y I + + L KGL QD+N PTL ++ + A F
Sbjct: 1099 VEPPSYESVISMERHHLIKGLQPKQDLNNSQNGVKSPTLSSQNYSFQ-SFANTGKFHLGD 1157
Query: 758 RNESIIIVQDKVQVP 772
R SI+ DK +P
Sbjct: 1158 RVVSIL---DKGNLP 1169
Score = 44 (20.5 bits), Expect = 9.2e-112, Sum P(5) = 9.2e-112
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1614 QQQQTVEPEQNKQAFPPH--PDQLAQPGD 1640
Q +Q +P+Q+KQ PP P Q +P D
Sbjct: 1414 QPKQPKQPKQSKQ--PPQQPPQQPQEPID 1440
Score = 44 (20.5 bits), Expect = 9.2e-112, Sum P(5) = 9.2e-112
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 1622 EQNKQAFPPHPDQLAQPGDDVTSLIRPQPGP 1652
+QN Q P QL QP +PQP P
Sbjct: 1384 DQNDQR--KQPQQLQQPKPQQQPQPQPQPQP 1412
Score = 43 (20.2 bits), Expect = 1.1e-112, Sum P(6) = 1.1e-112
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 1614 QQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPG-PVRGHTNSSDLSRSTNAQ 1669
QQ++ +Q +Q HP Q QP QP P + + N + ++ Q
Sbjct: 1587 QQEEHHHHQQQQQEQQQHPTQQEQPNQHPKKKQPKQPKLPKQPNQNQTQPTQDGQQQ 1643
Score = 43 (20.2 bits), Expect = 8.3e-101, Sum P(5) = 8.3e-101
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 1128 TLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSY 1187
T+ V NKL + T+ P+ TK + D D Y + L +I ++ +
Sbjct: 801 TILVHINKL-VGVQTM----PNGSTKKRYSDE----EDVYPIELMVDYDLIAT---DSRF 848
Query: 1188 DAMYDVVFDKPFPHGVKI 1205
+ + ++ F+K FP G K+
Sbjct: 849 EEIDELPFEKRFPIGKKV 866
Score = 40 (19.1 bits), Expect = 1.7e-100, Sum P(5) = 1.7e-100
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 919 ALSNPHYGSGGCVISTVKEENSFIKLSFKVQQEPDLS 955
A++NP+ V +K + +++K +F+ Q+ DLS
Sbjct: 1340 AINNPN-----SVNYPMKRKPTYVKQNFEQQEYADLS 1371
Score = 40 (19.1 bits), Expect = 2.3e-37, Sum P(4) = 2.3e-37
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 693 AINENHAVEKPLYRDDIYVHPN 714
AIN ++V P+ R YV N
Sbjct: 1340 AINNPNSVNYPMKRKPTYVKQN 1361
Score = 40 (19.1 bits), Expect = 8.6e-35, Sum P(6) = 8.6e-35
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 165 SAKEAEVLEQKAKEKGERLPTEK 187
S E + L+++AK++ ERL E+
Sbjct: 365 SVLEHDGLDEEAKKEFERLAMER 387
Score = 40 (19.1 bits), Expect = 2.4e-06, Sum P(5) = 2.4e-06
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 104 SAKEAEVLEQKAKEKGERLPTEK 126
S E + L+++AK++ ERL E+
Sbjct: 365 SVLEHDGLDEEAKKEFERLAMER 387
Score = 38 (18.4 bits), Expect = 3.7e-112, Sum P(6) = 3.7e-112
Identities = 16/62 (25%), Positives = 20/62 (32%)
Query: 1613 LQQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRG 1672
+ QT +P+ Q PPH PG P P GH+ P G
Sbjct: 1504 ISSDQTNDPDGLPQGPPPHMMGHYPPGPPPMMGYPPHYHP--GHSYPPPPPHMMGNYPPG 1561
Query: 1673 IP 1674
P
Sbjct: 1562 PP 1563
Score = 37 (18.1 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 555 YPHHYAPYISDIKDFSHLNLKYEMGEP 581
YP HY P S H+ Y G P
Sbjct: 1537 YPPHYHPGHSYPPPPPHMMGNYPPGPP 1563
>SGD|S000005574 [details] [associations]
symbol:RAT1 "Nuclear 5' to 3' single-stranded RNA
exonuclease" species:4932 "Saccharomyces cerevisiae" [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IMP]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IGI;IMP] [GO:0006396 "RNA processing"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006353 "DNA-dependent transcription, termination"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SGD:S000005574
GO:GO:0005739 GO:GO:0005634 EMBL:BK006948 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0006364 GO:GO:0030846
GO:GO:0071028 GO:GO:0030847 EMBL:L06011 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098 KO:K12619
OrthoDB:EOG43NBMS EMBL:M95626 EMBL:Z11746 EMBL:S61567 EMBL:Z74956
PIR:S20126 RefSeq:NP_014691.1 ProteinModelPortal:Q02792 SMR:Q02792
DIP:DIP-6692N IntAct:Q02792 MINT:MINT-639904 STRING:Q02792
PaxDb:Q02792 PeptideAtlas:Q02792 EnsemblFungi:YOR048C GeneID:854213
KEGG:sce:YOR048C OMA:NMVRPRK NextBio:976071 Genevestigator:Q02792
GermOnline:YOR048C Uniprot:Q02792
Length = 1006
Score = 622 (224.0 bits), Expect = 2.3e-101, Sum P(3) = 2.3e-101
Identities = 145/323 (44%), Positives = 197/323 (60%)
Query: 133 LKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEK--------GERLP 184
L P+K+ MA+DGVAPRAKMNQQR RRFRSA++A++ E +A+E+ GE +
Sbjct: 88 LNMARPRKVLVMAVDGVAPRAKMNQQRARRFRSARDAQI-ENEAREEIMRQREEVGEIID 146
Query: 185 ----TEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSG 240
+K +DSN ITPGTPFM +L LRY+ K+ TD WK++ VI+S
Sbjct: 147 DAVRNKKTWDSNAITPGTPFMDKLAAALRYWTAFKLATDP---------GWKNLQVIISD 197
Query: 241 HETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEV-- 298
PGEGEHKIM++IR ++ P+YNPN HC+YGLDADLI LGL THEP+F +LRE+V
Sbjct: 198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFA 257
Query: 299 KFNTKSNKGGSQI-VTPEETKF---------FL-LHLSLMRDYLELEFGKLKEPGVLSFP 347
+ N K N I +T EE +F FL LH++++R+YL E L PG L F
Sbjct: 258 QDNRKRNNLKDTINMTEEEKQFLQKQNSEQPFLWLHINVLREYLSAE---LWVPG-LPFT 313
Query: 348 FSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLN 407
F +E IDDWV M F GNDF+P+LP L + ++ +L +++ VLP L Y+ G LN
Sbjct: 314 FDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLN 373
Query: 408 LKRFEKFLTKLASFDFEQFREKY 430
L E L L S + + F+ ++
Sbjct: 374 LPSVETLLQHLGSREGDIFKTRH 396
Score = 480 (174.0 bits), Expect = 2.3e-101, Sum P(3) = 2.3e-101
Identities = 105/266 (39%), Positives = 156/266 (58%)
Query: 503 EFGQHKTDYYHYKLDYAKVTNEVLR-DQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAP 561
E G H+ YY K E LR D +CYI + W L YYY GC SW+W+YP+HYAP
Sbjct: 601 EPGYHER-YYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYHYAP 659
Query: 562 YISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPE 621
+D FSHL +K+E G PFLP++QL++VLPAAS LP+ +++LM+ +S I+++YPE
Sbjct: 660 LATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSEPDSEIIDFYPE 719
Query: 622 EFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG-PMLVYTYSNV 680
EF D+NGKK W+ + L+PFID+ +L+ A+ A LL+D ER+RN G P+L+ + N
Sbjct: 720 EFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPVLLISNKNA 779
Query: 681 NLGTALAPDYFPAINENHAVEK-PLYRDDIYVHPNKLRKGLCQDVNLKLYVT-HFPTLKH 738
N Y N N+ V K ++ + +K +G ++N K+ +L +
Sbjct: 780 NYERFSKKLYSKENNNNNVVVKFQHFKSGLSGIVSKDVEGF--ELNGKIVCPIQGGSLPN 837
Query: 739 VQFTHKIENAKVKVFQQPSRNESIII 764
+ T I ++ PSRN+SII+
Sbjct: 838 LSTT-LILKMSYRLIPLPSRNKSIIL 862
Score = 285 (105.4 bits), Expect = 9.7e-65, Sum P(3) = 9.7e-65
Identities = 65/136 (47%), Positives = 87/136 (63%)
Query: 1 MGVPKFFRYISERYP-CLSEVVREY-QI------P----------EFDNLYLDMNGIIHN 42
MGVP FFR++S +YP +S V+ E QI P E DNLYLDMNGI+H
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNGELDNLYLDMNGIVHP 60
Query: 43 CSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRF 102
CSHP + P TE ++ +F Y + M +P+K+ MA+DGVAPRAKMNQQR RRF
Sbjct: 61 CSHPENKPPPE--TEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRF 118
Query: 103 RSAKEAEVLEQKAKEK 118
RSA++A++ E +A+E+
Sbjct: 119 RSARDAQI-ENEAREE 133
Score = 50 (22.7 bits), Expect = 3.4e-40, Sum P(3) = 3.4e-40
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 47 NDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVA--PRAK-MNQQRGRRFR 103
ND PH + + ++ + +++++ PK +M DGV P + + Q G R
Sbjct: 332 NDFLPHLPCLD--VRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREG 389
Query: 104 SA-KEAEVLEQKAKEKGERLPTEK 126
K + E + KE ER +K
Sbjct: 390 DIFKTRHIQEARKKEAFERRKAQK 413
Score = 42 (19.8 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 698 HAVEKPLYRDDIYVHPNKLRKGLCQDVNL 726
H + R+D++ N+ R L +N+
Sbjct: 244 HEPHFKILREDVFAQDNRKRNNLKDTINM 272
Score = 41 (19.5 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 49 NDPHFRITEKQIF-QD 63
++PHF+I + +F QD
Sbjct: 244 HEPHFKILREDVFAQD 259
Score = 40 (19.1 bits), Expect = 2.3e-101, Sum P(3) = 2.3e-101
Identities = 11/65 (16%), Positives = 29/65 (44%)
Query: 1469 IKQNNITAKTDYPTTSTFPEVKYTNSPSDNGGRTATPDTSFTTKLTNLFNRSSSNDTEAE 1528
+ +NN+ +Y S + + NS D G ++++ N ++ + ++ +
Sbjct: 930 LSRNNVQPAHNYGRNSYNSQPGFNNSRYDGGNNNYRQNSNYRN---NNYSGNRNSGQYSG 986
Query: 1529 NTFKR 1533
N++ R
Sbjct: 987 NSYSR 991
Score = 39 (18.8 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 1210 SRGYRMPAQAMINLSYGERL-CGNSNPHVKNINVMQSRGERNTNYA 1254
SR PA SY + NS N N Q+ RN NY+
Sbjct: 931 SRNNVQPAHNYGRNSYNSQPGFNNSRYDGGNNNYRQNSNYRNNNYS 976
Score = 37 (18.1 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSL 1112
+ + D P +GE ++ + + P C + DA ++ L
Sbjct: 193 VIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGL-DADLIFL 239
>TAIR|locus:2005614 [details] [associations]
symbol:XRN3 "5'-3' exoribonuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IGI;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009888 "tissue development" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0032204 "regulation of telomere maintenance" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0043247 "telomere maintenance in response to DNA
damage" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC006434
GO:GO:0010587 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:AF286719
EMBL:AY136383 EMBL:BT000175 IPI:IPI00542756 IPI:IPI00903453
PIR:D96786 RefSeq:NP_565114.1 UniGene:At.23685
ProteinModelPortal:Q9FQ03 SMR:Q9FQ03 STRING:Q9FQ03 PaxDb:Q9FQ03
PRIDE:Q9FQ03 EnsemblPlants:AT1G75660.1 GeneID:843900
KEGG:ath:AT1G75660 TAIR:At1g75660 InParanoid:Q9FQ03 OMA:ILREVVY
PhylomeDB:Q9FQ03 Genevestigator:Q9FQ03 Uniprot:Q9FQ03
Length = 1020
Score = 446 (162.1 bits), Expect = 2.4e-97, Sum P(5) = 2.4e-97
Identities = 100/183 (54%), Positives = 122/183 (66%)
Query: 128 FDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA-------EVLEQKAKE 178
FD+I F P+KL +MAIDGVAPRAKMNQQR RRFRSAK+A E L ++ +
Sbjct: 82 FDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFER 141
Query: 179 KGERLPTE---KRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVC 235
+G RLP + + FDSN ITPGT FM L L+Y+V L++ D WK++
Sbjct: 142 EGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHLRLNHDV---------GWKNIK 192
Query: 236 VILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLR 295
VILS PGEGEHKIM YIR ++ P ++PN RHCLYGLDADLIMLGL THE +FS+LR
Sbjct: 193 VILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILR 252
Query: 296 EEV 298
E V
Sbjct: 253 EVV 255
Score = 428 (155.7 bits), Expect = 2.4e-97, Sum P(5) = 2.4e-97
Identities = 75/159 (47%), Positives = 106/159 (66%)
Query: 513 HYKLDYAKVTNE----VLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIKD 568
+Y+ ++ VT E V +D Y + W +HYY G SW W+YP+HYAP+ SD+KD
Sbjct: 542 YYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKD 601
Query: 569 FSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDLN 628
+++K+E+G PF PF QLL V PAAS LPE Y+ LMT NSPI+++YP +F D+N
Sbjct: 602 LGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMN 661
Query: 629 GKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN 667
GK+ W+ + +PFIDE +L++A+ VE LTDEE+ RN
Sbjct: 662 GKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRN 700
Score = 284 (105.0 bits), Expect = 2.0e-75, Sum P(5) = 2.0e-75
Identities = 60/103 (58%), Positives = 75/103 (72%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
E+DNLYLDMNGIIH C HP D P T +++FQ +F YI+ LF M++P+KL +MAIDG
Sbjct: 47 EYDNLYLDMNGIIHPCFHPEDR-PS-PTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKEA-------EVLEQKAKEKGERLP 123
VAPRAKMNQQR RRFRSAK+A E L ++ + +G RLP
Sbjct: 105 VAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRRLP 147
Score = 218 (81.8 bits), Expect = 2.4e-97, Sum P(5) = 2.4e-97
Identities = 42/108 (38%), Positives = 71/108 (65%)
Query: 322 LHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGA 381
LH+ ++R+YLELE ++ P F +E I+DD++ + F +GNDF+P++P L I GA
Sbjct: 305 LHIWVLREYLELEM-RIPNP---PFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGA 360
Query: 382 LPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREK 429
+ LL VY++ + DGY+ +G NLKR E+F+ + SF+ + F+++
Sbjct: 361 INLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKR 408
Score = 76 (31.8 bits), Expect = 2.4e-97, Sum P(5) = 2.4e-97
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 1 MGVPKFFRYISERYPCL-SEVVREYQIPEFDNLYLDMNGIIHNCSHPNDND 50
MGVP F+R+++E+YP L ++V+ E + E + + + ++ S PN N+
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPV-EIEGIKIPVD-----TSKPNPNN 45
Score = 61 (26.5 bits), Expect = 3.7e-59, Sum P(5) = 3.7e-59
Identities = 28/133 (21%), Positives = 55/133 (41%)
Query: 1452 ANKRSENGFNIPSIS-DLIKQNNITAK--TDYPTTSTFPEVKYTNSPSDNGGRTATPDTS 1508
A KR ++ P++ DL+ + PT S F ++P R +P +S
Sbjct: 427 ATKRMDD--EAPTVQPDLVPVARFSGSRLASAPTPSPFQSNDGRSAPHQKV-RRLSPGSS 483
Query: 1509 FTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLL-----EKNK-ELNTPSGGELSF 1562
+ ++ N S++ E + K + ++++ E++K +L P E +
Sbjct: 484 VGAAIVDVENSLESDERENKEELKTKLKELIREKSDAFNSDTTEEDKVKLGQPGWRERYY 543
Query: 1563 EEKHSMAAKSKNE 1575
EEK S+ + E
Sbjct: 544 EEKFSVVTPEEME 556
Score = 45 (20.9 bits), Expect = 2.4e-97, Sum P(5) = 2.4e-97
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1745 TTEDLEERADSYLAKLLRLTRAHNLGAPDYTFSMD 1779
T D E+R +S + +L + +H L + FS+D
Sbjct: 691 TLTDEEKRRNSRMCDMLFIATSHRLA--ELVFSLD 723
Score = 40 (19.1 bits), Expect = 6.7e-20, Sum P(4) = 6.7e-20
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAV-VDAKVVSLIEHAV 1117
+ L D P +GE ++ + + P R C + D ++ L H V
Sbjct: 193 VILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEV 246
Score = 39 (18.8 bits), Expect = 9.0e-41, Sum P(5) = 9.0e-41
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 879 FIRSTVTYAYQSAVLNLQQARESLEYKTIDEIFYPGCQ 916
F+ T + +NL A E+++ D GC+
Sbjct: 347 FLPHMPTLEIREGAINLLMAVYKKEFRSFDGYLTDGCK 384
Score = 38 (18.4 bits), Expect = 9.7e-57, Sum P(4) = 9.7e-57
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 581 PFLPFQQ--LLAVLPAASKELLPEPYQN 606
P +P+Q +A P A P PYQN
Sbjct: 898 PPIPYQHGGYMAP-PGAQGYAQPAPYQN 924
Score = 37 (18.1 bits), Expect = 7.9e-96, Sum P(6) = 7.9e-96
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 943 KLSFKVQQEPDLSD 956
++ FKV+ +P LSD
Sbjct: 734 RVDFKVKIKPKLSD 747
Score = 37 (18.1 bits), Expect = 7.9e-96, Sum P(6) = 7.9e-96
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1198 PFPHGVKIRCSESRGYRMPA 1217
P+ HG + ++GY PA
Sbjct: 901 PYQHGGYMAPPGAQGYAQPA 920
>UNIPROTKB|F1MKX7 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:DAAA02035814 EMBL:DAAA02035815 IPI:IPI00699133
RefSeq:NP_001179401.1 UniGene:Bt.8587 Ensembl:ENSBTAT00000015019
GeneID:517417 KEGG:bta:517417 NextBio:20872434 Uniprot:F1MKX7
Length = 951
Score = 462 (167.7 bits), Expect = 5.2e-96, Sum P(4) = 5.2e-96
Identities = 105/202 (51%), Positives = 132/202 (65%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
AE+ +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 390 (142.3 bits), Expect = 5.2e-96, Sum P(4) = 5.2e-96
Identities = 83/236 (35%), Positives = 125/236 (52%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRN----------RHGPMLVYT 676
LNGK+ W+ V L+PF+DE +L A++ V LT EE RN +H P+ +
Sbjct: 637 LNGKRYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFI 696
Query: 677 YSNVNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLYVTH 732
G+ + D P + H ++ D+ V PN++ +C + + +TH
Sbjct: 697 LELYKTGSTESVDVPPELC--HGIQGKFSLDEEAVLPNQV---VCSPIPVLKDLTH 747
Score = 283 (104.7 bits), Expect = 3.1e-74, Sum P(3) = 3.1e-74
Identities = 62/112 (55%), Positives = 80/112 (71%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE AE+ +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFD 156
Score = 226 (84.6 bits), Expect = 5.2e-96, Sum P(4) = 5.2e-96
Identities = 51/144 (35%), Positives = 76/144 (52%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F + LS++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFIRLSVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPD 459
E ++ KEK K M D
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRD 428
Score = 72 (30.4 bits), Expect = 5.2e-96, Sum P(4) = 5.2e-96
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 40 (19.1 bits), Expect = 1.8e-59, Sum P(4) = 1.8e-59
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 889 EPLLPWNRMLQTQNAAFQ---PNQYQML 913
Score = 40 (19.1 bits), Expect = 1.8e-59, Sum P(4) = 1.8e-59
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 533
Score = 37 (18.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>RGD|1310218 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10116 "Rattus
norvegicus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0016049 "cell growth"
evidence=IEA;ISO] [GO:0016070 "RNA metabolic process"
evidence=IEA;ISO] [GO:0016235 "aggresome" evidence=IEA;ISO]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 RGD:1310218
GO:GO:0005730 GO:GO:0016049 GO:GO:0008270 GO:GO:0003676
GO:GO:0016070 GO:GO:0000738 EMBL:CH474026 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
OMA:RKRMKRD OrthoDB:EOG4M0F0Z IPI:IPI00357938 UniGene:Rn.64021
Ensembl:ENSRNOT00000016351 Uniprot:D4A914
Length = 951
Score = 456 (165.6 bits), Expect = 5.8e-96, Sum P(5) = 5.8e-96
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 391 (142.7 bits), Expect = 5.8e-96, Sum P(5) = 5.8e-96
Identities = 72/169 (42%), Positives = 102/169 (60%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + ++E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVY 675
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G +++
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGSDVLF 685
Score = 277 (102.6 bits), Expect = 6.7e-74, Sum P(4) = 6.7e-74
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 156
Score = 234 (87.4 bits), Expect = 5.8e-96, Sum P(5) = 5.8e-96
Identities = 53/147 (36%), Positives = 78/147 (53%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P FPF +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFLRLNVLREYLERELTMASLP----FPFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRDQPA 431
Score = 72 (30.4 bits), Expect = 5.8e-96, Sum P(5) = 5.8e-96
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 44 (20.5 bits), Expect = 9.1e-60, Sum P(6) = 9.1e-60
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1107 AKVVSLIEHAVDTCEKVEKQITLFVKPNKLYIPKPTLDKLCPDPDT 1152
A + S E + +E+ + +F + ++P PT KL DPD+
Sbjct: 579 ADMPSEFEKGTKPFKPLEQLMGVFPAASGNFLP-PTWRKLMSDPDS 623
Score = 42 (19.8 bits), Expect = 5.8e-96, Sum P(5) = 5.8e-96
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 1383 ELFSTGGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQT 1442
EL+ TG P +D+P + G+ + ++ P++ C + ++T T
Sbjct: 698 ELYQTGSTE----P--VDVPPELCHGIQGKFSLDEEAILPDQTVCSPVPMLRDLTQNT-A 750
Query: 1443 ITMN 1446
I++N
Sbjct: 751 ISIN 754
Score = 40 (19.1 bits), Expect = 9.1e-60, Sum P(6) = 9.1e-60
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 533
Score = 40 (19.1 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 888 EPLLPWNRMLQTQNAAFQ---PNQYQML 912
Score = 37 (18.1 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>MGI|MGI:894687 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10090 "Mus
musculus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0006310 "DNA recombination" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007017 "microtubule-based process" evidence=TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISO] [GO:0016049 "cell growth" evidence=IGI]
[GO:0016070 "RNA metabolic process" evidence=IGI] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Reactome:REACT_93132 InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 MGI:MGI:894687
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0016049
GO:GO:0008270 GO:GO:0006281 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006310 GO:GO:0016070 GO:GO:0007017
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z ChiTaRS:XRN2 EMBL:D38517
EMBL:AK004800 EMBL:AK031247 EMBL:AK053643 EMBL:AK133654
EMBL:AK167019 EMBL:AK168037 EMBL:BC004028 EMBL:BC054743
IPI:IPI00120046 IPI:IPI00283057 PIR:I49635 RefSeq:NP_036047.2
UniGene:Mm.3065 ProteinModelPortal:Q9DBR1 SMR:Q9DBR1 IntAct:Q9DBR1
STRING:Q9DBR1 PhosphoSite:Q9DBR1 PaxDb:Q9DBR1 PRIDE:Q9DBR1
Ensembl:ENSMUST00000028921 GeneID:24128 KEGG:mmu:24128
UCSC:uc008msq.1 InParanoid:Q9DBR1 NextBio:304163 Bgee:Q9DBR1
CleanEx:MM_XRN2 Genevestigator:Q9DBR1 GermOnline:ENSMUSG00000027433
Uniprot:Q9DBR1
Length = 951
Score = 456 (165.6 bits), Expect = 7.3e-96, Sum P(5) = 7.3e-96
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 393 (143.4 bits), Expect = 7.3e-96, Sum P(5) = 7.3e-96
Identities = 72/164 (43%), Positives = 100/164 (60%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ ++ ++E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLG 680
Score = 277 (102.6 bits), Expect = 8.3e-74, Sum P(4) = 8.3e-74
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 156
Score = 234 (87.4 bits), Expect = 7.3e-96, Sum P(5) = 7.3e-96
Identities = 53/147 (36%), Positives = 78/147 (53%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P FPF +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFLRLNVLREYLERELTMASLP----FPFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRDQPA 431
Score = 72 (30.4 bits), Expect = 7.3e-96, Sum P(5) = 7.3e-96
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 44 (20.5 bits), Expect = 1.9e-59, Sum P(6) = 1.9e-59
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1107 AKVVSLIEHAVDTCEKVEKQITLFVKPNKLYIPKPTLDKLCPDPDT 1152
A + S E + +E+ + +F + ++P PT KL DPD+
Sbjct: 579 ADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLP-PTWRKLMSDPDS 623
Score = 40 (19.1 bits), Expect = 1.9e-59, Sum P(6) = 1.9e-59
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 533
Score = 39 (18.8 bits), Expect = 7.3e-96, Sum P(5) = 7.3e-96
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 1383 ELFSTGGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQT 1442
EL+ TG P +D+P + G + ++ P++ C + ++T T
Sbjct: 698 ELYQTGSTE----P--VDVPPELCHGIQGTFSLDEEAILPDQTVCSPVPMLRDLTQNT-A 750
Query: 1443 ITMN 1446
+++N
Sbjct: 751 VSIN 754
Score = 37 (18.1 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>ZFIN|ZDB-GENE-040426-2874 [details] [associations]
symbol:xrn2 "5'-3' exoribonuclease 2" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 SMART:SM00343 ZFIN:ZDB-GENE-040426-2874
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z EMBL:BX005124 EMBL:CT573061
IPI:IPI00835014 RefSeq:NP_001001944.2 UniGene:Dr.10637
Ensembl:ENSDART00000100246 GeneID:321940 KEGG:dre:321940
NextBio:20807592 Uniprot:A5WVY7
Length = 952
Score = 456 (165.6 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 102/202 (50%), Positives = 129/202 (63%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA 169
E K K E F++I F P+++ +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 170 -EVLEQKAK------EKGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
E+ E+K K E+G LP E+ RFDSNCITPGT FM L + LRY+V ++T D
Sbjct: 126 VELAEEKQKMREEVIERGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVADRLTND 185
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
W+++ V LS PGEGEHKIMDYIR + +P+++PN HCL G DADL
Sbjct: 186 P---------GWRNITVFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 385 (140.6 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 72/169 (42%), Positives = 101/169 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D +E + + Y+ + W L YYY GC SW WY+P HYAP+ SD K
Sbjct: 525 KQRYYKTKFDVDATDDEFRKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFK 584
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
D + +E G +PF P +QL+ V PAAS LP ++ LM+ S I+++YP++FA D
Sbjct: 585 DIKGMFSDFEKGTKPFKPLEQLMGVFPAASGNFLPTTWRALMSDPESSIIDFYPDDFAID 644
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVY 675
LNGKK W+ V L+PF+DE +L A+ V + LT EE RN G +++
Sbjct: 645 LNGKKYAWQGVALLPFVDERRLRAALAEVYNDLTPEEVRRNSLGSDVMF 693
Score = 280 (103.6 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 70/146 (47%), Positives = 91/146 (62%)
Query: 8 RYISERYPCLSEVVREY---QIP-----------EFDNLYLDMNGIIHNCSHPNDNDPHF 53
+Y S CL E +EY +IP EFDNLYLDMNGIIH C+HP D P
Sbjct: 13 KYPSIIVHCLEEKAKEYNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDK-PAP 71
Query: 54 RITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA-EVLE 112
+ E ++ IF YI+ LF +++P+++ +MAIDGVAPRAKMNQQR RRFR++KE E+ E
Sbjct: 72 K-NEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRASKEGVELAE 130
Query: 113 QKAK------EKGERLPTEK---RFD 129
+K K E+G LP E+ RFD
Sbjct: 131 EKQKMREEVIERGGYLPPEEIKERFD 156
Score = 232 (86.7 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 46/128 (35%), Positives = 74/128 (57%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F + L+++R+YLE E P FPFS E +DDWV M F +GNDF+P+LP L
Sbjct: 298 EQEFIFIRLAVLREYLERELTMASLP----FPFSFERSVDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y++V+ GY+ E G++NL+R E + + + F+++ D +
Sbjct: 354 EIREGAIDRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDES 413
Query: 436 LEGKMGKK 443
+ +M K
Sbjct: 414 FKRRMKDK 421
Score = 75 (31.5 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 1 MGVPKFFRYISERYP-----CLSEVVREY 24
MGVP FFR++S +YP CL E +EY
Sbjct: 1 MGVPAFFRWLSRKYPSIIVHCLEEKAKEY 29
Score = 51 (23.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE 1124
++L D P +GE ++ + + QP+ C DA ++ L + T E
Sbjct: 193 VFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGA-DADLIML---GLATHEPNF 248
Query: 1125 KQITLFVKPNKLYIPKP 1141
I KPNK P+P
Sbjct: 249 TIIREEFKPNK---PRP 262
Score = 44 (20.5 bits), Expect = 6.0e-33, Sum P(3) = 6.0e-33
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 102 FRSAKEA-EVLEQKAKEKGERLPTEKRFDFI 131
F+ KE E +++ K+K +R+ E+R F+
Sbjct: 404 FKKRKEDDESFKRRMKDKKKRMKAEQRPSFL 434
Score = 40 (19.1 bits), Expect = 9.9e-60, Sum P(4) = 9.9e-60
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATD 626
PEP N+ E+ YY +F D
Sbjct: 511 PEPEDNVRLWEDGWKQRYYKTKFDVD 536
Score = 40 (19.1 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 163 FRSAKEA-EVLEQKAKEKGERLPTEKR 188
F+ KE E +++ K+K +R+ E+R
Sbjct: 404 FKKRKEDDESFKRRMKDKKKRMKAEQR 430
>UNIPROTKB|F1SAU5 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:CU633728 EMBL:CU459108 RefSeq:XP_003134355.2 UniGene:Ssc.7627
Ensembl:ENSSSCT00000007781 GeneID:100517201 KEGG:ssc:100517201
Uniprot:F1SAU5
Length = 950
Score = 456 (165.6 bits), Expect = 3.1e-95, Sum P(4) = 3.1e-95
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 387 (141.3 bits), Expect = 3.1e-95, Sum P(4) = 3.1e-95
Identities = 72/164 (43%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 277 (102.6 bits), Expect = 1.7e-73, Sum P(3) = 1.7e-73
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 156
Score = 228 (85.3 bits), Expect = 3.1e-95, Sum P(4) = 3.1e-95
Identities = 52/144 (36%), Positives = 76/144 (52%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L LS++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFLRLSVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPD 459
E ++ KEK K M D
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRD 428
Score = 72 (30.4 bits), Expect = 3.1e-95, Sum P(4) = 3.1e-95
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 40 (19.1 bits), Expect = 5.1e-59, Sum P(4) = 5.1e-59
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 888 EPLLPWNRMLQTQNAAFQ---PNQYQML 912
Score = 40 (19.1 bits), Expect = 5.1e-59, Sum P(4) = 5.1e-59
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 533
Score = 37 (18.1 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>UNIPROTKB|Q9H0D6 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0016070 "RNA metabolic
process" evidence=ISS] [GO:0016049 "cell growth" evidence=ISS]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=IEP] [GO:0004518 "nuclease
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
Reactome:REACT_17015 InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0016049 GO:GO:0008270 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006401 GO:GO:0006396 GO:GO:0016235
GO:GO:0000738 GO:GO:0006353 EMBL:AL158013 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
EMBL:AF064257 EMBL:AF152169 EMBL:AY382900 EMBL:AL136841
EMBL:AL117332 EMBL:AK000084 EMBL:BC006417 IPI:IPI00100151
IPI:IPI00788157 RefSeq:NP_036387.2 UniGene:Hs.255932
ProteinModelPortal:Q9H0D6 SMR:Q9H0D6 IntAct:Q9H0D6
MINT:MINT-3065664 STRING:Q9H0D6 PhosphoSite:Q9H0D6 DMDM:30173484
SWISS-2DPAGE:Q9H0D6 PaxDb:Q9H0D6 PeptideAtlas:Q9H0D6 PRIDE:Q9H0D6
DNASU:22803 Ensembl:ENST00000377191 Ensembl:ENST00000430571
GeneID:22803 KEGG:hsa:22803 UCSC:uc002wsf.1 GeneCards:GC20P021283
HGNC:HGNC:12836 HPA:HPA047118 MIM:608851 neXtProt:NX_Q9H0D6
PharmGKB:PA37427 InParanoid:Q9H0D6 PhylomeDB:Q9H0D6 ChiTaRS:XRN2
GenomeRNAi:22803 NextBio:43160 PMAP-CutDB:Q9H0D6
ArrayExpress:Q9H0D6 Bgee:Q9H0D6 CleanEx:HS_XRN2
Genevestigator:Q9H0D6 GermOnline:ENSG00000088930 Uniprot:Q9H0D6
Length = 950
Score = 458 (166.3 bits), Expect = 1.3e-94, Sum P(4) = 1.3e-94
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 387 (141.3 bits), Expect = 1.3e-94, Sum P(4) = 1.3e-94
Identities = 72/164 (43%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 276 (102.2 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 156
Score = 220 (82.5 bits), Expect = 1.3e-94, Sum P(4) = 1.3e-94
Identities = 51/147 (34%), Positives = 76/147 (51%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFLRLNVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I A+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRDQPA 431
Score = 72 (30.4 bits), Expect = 1.3e-94, Sum P(4) = 1.3e-94
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 41 (19.5 bits), Expect = 1.7e-58, Sum P(4) = 1.7e-58
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1247 GERNTNYAQVTRQPQRTTF----YKENAPLVNSNLQVTS 1281
G RN+ +QV P++ + ++P ++ N TS
Sbjct: 444 GSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTS 482
Score = 40 (19.1 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 888 EPLLPWNRMLQTQNAAFQ---PNQYQML 912
Score = 40 (19.1 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 533
Score = 40 (19.1 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 1488 EVKYTNSPSDNGGRTATPDTSFTTK-----LTNLFNRSSSNDTEAE 1528
+ Y +N + +P+TSFT+ L + ++ +D+E E
Sbjct: 459 QAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDSEPE 504
Score = 37 (18.1 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>UNIPROTKB|E2RMS9 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
KO:K12619 CTD:22803 OMA:RKRMKRD EMBL:AAEX03013750
RefSeq:XP_534324.2 Ensembl:ENSCAFT00000008370 GeneID:477133
KEGG:cfa:477133 NextBio:20852667 Uniprot:E2RMS9
Length = 950
Score = 456 (165.6 bits), Expect = 1.6e-94, Sum P(5) = 1.6e-94
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 388 (141.6 bits), Expect = 1.6e-94, Sum P(5) = 1.6e-94
Identities = 72/164 (43%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETKRNSLG 680
Score = 277 (102.6 bits), Expect = 2.0e-72, Sum P(4) = 2.0e-72
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 156
Score = 226 (84.6 bits), Expect = 1.6e-94, Sum P(5) = 1.6e-94
Identities = 52/147 (35%), Positives = 77/147 (52%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFLRLNVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRDQPA 431
Score = 72 (30.4 bits), Expect = 1.6e-94, Sum P(5) = 1.6e-94
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 41 (19.5 bits), Expect = 6.5e-59, Sum P(4) = 6.5e-59
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1247 GERNTNYAQVTRQPQRTTF----YKENAPLVNSNLQVTS 1281
G RN+ +QV P++ + ++P ++ N TS
Sbjct: 444 GSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTS 482
Score = 40 (19.1 bits), Expect = 8.3e-59, Sum P(4) = 8.3e-59
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 888 EPLLPWNRMLQTQNAAFQ---PNQYQML 912
Score = 40 (19.1 bits), Expect = 2.5e-58, Sum P(5) = 2.5e-58
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 533
Score = 39 (18.8 bits), Expect = 1.6e-94, Sum P(5) = 1.6e-94
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 996 DSTEEGAKRHNIGLNIKFSRKNEEVVGF 1023
D T E KR+++G ++ F K+ + F
Sbjct: 668 DLTPEETKRNSLGGDVLFVGKHHPLHDF 695
Score = 38 (18.4 bits), Expect = 1.3e-58, Sum P(4) = 1.3e-58
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 1488 EVKYTNSPSDNGGRTATPDTSFTTK-----LTNLFNRSSSNDTEAE 1528
+ Y +N + +P+TSFT+ + + ++ +D+E E
Sbjct: 459 QAAYEMRMQNNSSPSISPNTSFTSDGSPSPIGGIKRKAEDSDSEPE 504
Score = 37 (18.1 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>UNIPROTKB|Q5R4L5 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9601 "Pongo
abelii" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 EMBL:CR861231 RefSeq:NP_001126942.1
UniGene:Pab.18504 PRIDE:Q5R4L5 GeneID:100173960 KEGG:pon:100173960
InParanoid:Q5R4L5 Uniprot:Q5R4L5
Length = 950
Score = 458 (166.3 bits), Expect = 5.2e-94, Sum P(5) = 5.2e-94
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 237 IMLGLATHEPNFTIIREEFKPN 258
Score = 386 (140.9 bits), Expect = 5.2e-94, Sum P(5) = 5.2e-94
Identities = 72/164 (43%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDADAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 276 (102.2 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 156
Score = 220 (82.5 bits), Expect = 5.2e-94, Sum P(5) = 5.2e-94
Identities = 51/147 (34%), Positives = 76/147 (51%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 298 EGEFIFLRLNVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I A+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 354 EIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 410
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 411 -EDSFRRR-----QKEKRKRMKRDQPA 431
Score = 72 (30.4 bits), Expect = 5.2e-94, Sum P(5) = 5.2e-94
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + + ++ S PN ND F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDA-----SKPNPNDVEF 48
Score = 41 (19.5 bits), Expect = 3.9e-58, Sum P(5) = 3.9e-58
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1247 GERNTNYAQVTRQPQRTTF----YKENAPLVNSNLQVTS 1281
G RN+ +QV P++ + ++P ++ N TS
Sbjct: 444 GSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTS 482
Score = 40 (19.1 bits), Expect = 5.2e-94, Sum P(5) = 5.2e-94
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 1383 ELFSTGGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGTQT 1442
EL+ TG P +D+P + G+ + ++ P++ C + ++T T
Sbjct: 698 ELYQTGSTE----P--VDVPPELCHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNT-V 750
Query: 1443 ITMN 1446
+++N
Sbjct: 751 VSIN 754
Score = 40 (19.1 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 888 EPLLPWNRMLQTQNAAFQ---PNQYQML 912
Score = 40 (19.1 bits), Expect = 4.9e-58, Sum P(5) = 4.9e-58
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 503 PEPEDNVRLWEAGWKQRYYKNKFDADAADEK 533
Score = 38 (18.4 bits), Expect = 3.4e-58, Sum P(4) = 3.4e-58
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 1488 EVKYTNSPSDNGGRTATPDTSFTTK-----LTNLFNRSSSNDTEAE 1528
+ Y +N + +P+TSFT+ + + ++ +D+E E
Sbjct: 459 QAAYEMRMQNNSSPSISPNTSFTSDGSPSPIGGIKRKAEDSDSEPE 504
Score = 37 (18.1 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 186 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
>UNIPROTKB|Q5ZIP4 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0016049 "cell
growth" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA]
[GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0016049 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0008409 GO:GO:0000738
GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098
KO:K12619 EMBL:AJ720740 IPI:IPI00598321 RefSeq:NP_001026204.1
UniGene:Gga.8002 STRING:Q5ZIP4 PRIDE:Q5ZIP4
Ensembl:ENSGALT00000013637 GeneID:421236 KEGG:gga:421236 CTD:22803
HOVERGEN:HBG036677 InParanoid:Q5ZIP4 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
NextBio:20824031 Uniprot:Q5ZIP4
Length = 949
Score = 459 (166.6 bits), Expect = 8.5e-94, Sum P(4) = 8.5e-94
Identities = 105/202 (51%), Positives = 130/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA 169
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 125
Query: 170 -EVLEQKAK------EKGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
E E+K K KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 126 MEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 180
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 181 RLNSDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 236
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP+F+++REE K N
Sbjct: 237 IMLGLATHEPHFTIIREEFKPN 258
Score = 390 (142.3 bits), Expect = 8.5e-94, Sum P(4) = 8.5e-94
Identities = 73/164 (44%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW+WYYP HYAP+ SD +
Sbjct: 516 KQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFE 575
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LMT S I+++YPE+FA D
Sbjct: 576 GIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAID 635
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 636 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLG 679
Score = 275 (101.9 bits), Expect = 4.9e-72, Sum P(3) = 4.9e-72
Identities = 61/112 (54%), Positives = 77/112 (68%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ +F +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKEA-EVLEQKAK------EKGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE E E+K K KG LP E+ RFD
Sbjct: 105 VAPRAKMNQQRSRRFRASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFD 156
Score = 213 (80.0 bits), Expect = 8.5e-94, Sum P(4) = 8.5e-94
Identities = 41/117 (35%), Positives = 65/117 (55%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F + L ++R+YLE E P F F E +DDWV M F +GNDF+P+LP L
Sbjct: 298 EQEFIFIRLCVLREYLERELTMASLP----FTFDFERSVDDWVFMCFFVGNDFLPHLPSL 353
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD 432
I GA+ L +Y+ V+ GY+ E G++NL+R + + + + F+++ D
Sbjct: 354 EIREGAIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDD 410
Score = 67 (28.6 bits), Expect = 8.5e-94, Sum P(4) = 8.5e-94
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR++S +YP + E + E + + ++ S PN N+ F
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKASVD-----TSKPNPNEVEF 48
Score = 50 (22.7 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEKVE 1124
+ L D P +GE ++ + + QP+ C DA ++ L + T E
Sbjct: 193 VILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGA-DADLIML---GLATHEPHF 248
Query: 1125 KQITLFVKPNKLYIPKP 1141
I KPNK PKP
Sbjct: 249 TIIREEFKPNK---PKP 262
Score = 47 (21.6 bits), Expect = 5.2e-58, Sum P(4) = 5.2e-58
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E+ YY +F D + +K
Sbjct: 502 PEPEDNIRLWESGWKQRYYKNKFDVDASDEK 532
Score = 40 (19.1 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 1633 DQL-AQPG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
D+L + PG ++T ++ P G D R AQP P
Sbjct: 180 DRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 223
Score = 39 (18.8 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 650 KAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKP 703
K MD + N H + + LG A +F I E KP
Sbjct: 207 KIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPHFTIIREEFKPNKP 260
>DICTYBASE|DDB_G0269922 [details] [associations]
symbol:xrn2 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 dictyBase:DDB_G0269922 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_646407.1
STRING:Q55CS4 EnsemblProtists:DDB0237528 GeneID:8617364
KEGG:ddi:DDB_G0269922 InParanoid:Q55CS4 Uniprot:Q55CS4
Length = 1190
Score = 631 (227.2 bits), Expect = 3.4e-93, Sum P(3) = 3.4e-93
Identities = 156/397 (39%), Positives = 225/397 (56%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSA--- 166
E+ K K + ++++ L F P+KL +MA+DGVAPRAKMNQQR RRFR+A
Sbjct: 63 EKGPKPKSIEDMIQSIYEYLDLLFAIIRPRKLIYMAVDGVAPRAKMNQQRTRRFRAALDS 122
Query: 167 -----KEAEVLEQK------AKEKGERLPTEKR----FDSNCITPGTPFMCRLHQQLRYF 211
KEA + ++ +++ E+ EK+ FDSNCITPGT FM R+ + LR +
Sbjct: 123 RLDKDKEAALWRERIYDGLATQQEYEQYMEEKKNKFKFDSNCITPGTLFMDRVAESLRTY 182
Query: 212 VKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHC 271
V K+TTD WKDV +I+S PGEGEHKIMDY+R+ +++PDY+PN++H
Sbjct: 183 VAEKLTTDP---------AWKDVKIIISDASVPGEGEHKIMDYVRHQRAQPDYDPNLKHI 233
Query: 272 LYGLDADLIMLGLCTHEPYFSLLREEVKFNTKS------NKGGSQIVTPEET----KFFL 321
+YGLDADLIMLGL THE F +LRE ++ + KG I EE K FL
Sbjct: 234 IYGLDADLIMLGLATHEVNFDILREFIQPIARGVCHKCHKKGHLAIECKEEVDDSVKDFL 293
Query: 322 ------LHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
LHL L+++YLELE K+ P F F I+ I+DD++ + F +GNDF+P+LP+L
Sbjct: 294 VKNYQILHLHLLKEYLELET-KVSTP----FGFDIDRIVDDFIFLCFFVGNDFLPHLPNL 348
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYA-DIQ 434
I +GA+ + K Y+E+LP+ D Y+ G +N R + L + E F+ K D Q
Sbjct: 349 EIKDGAIDRVIKCYKELLPSFDDYLVSNGEVNFPRLSQIFVALTKGEEESFQRKIQKDAQ 408
Query: 435 YLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDY 471
L K + S++ + S ++ + K D +
Sbjct: 409 IL--KKRQNLSNIVSRPNSLNLNDKTSLSHKEAADKF 443
Score = 391 (142.7 bits), Expect = 3.4e-93, Sum P(3) = 3.4e-93
Identities = 81/206 (39%), Positives = 119/206 (57%)
Query: 501 FSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYA 560
+SE G D Y Y+ + + ++ + Y+ + W L YY+ GC SW WYYP+HY+
Sbjct: 609 YSEEGWR--DRY-YQSCFQVENEDDIKQICKSYVEGLVWVLKYYFKGCSSWGWYYPYHYS 665
Query: 561 PYISDI-KDFSHLNL-KYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTL-------E 611
PYI+DI K F +YEMGEPF PF QL++VLP AS + +P+PYQ LM + E
Sbjct: 666 PYITDISKFFDQFEYPQYEMGEPFKPFNQLMSVLPPASCQFVPKPYQKLMGISVDGEPVE 725
Query: 612 NSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGP 671
SPI+E+YP F D + ++ V L+PFI+ +KL+K + E LLT+EE RN G
Sbjct: 726 ESPIIEFYPRAFRIDRGPTEPLYKGVCLLPFINSIKLLKTISKTEPLLTEEEVDRNTLGH 785
Query: 672 MLVYTYSNVNLGTALAPDYFPAINEN 697
L++ + + N+ +A + EN
Sbjct: 786 DLMFCHKDSNINSAFKEGSVTQLPEN 811
Score = 271 (100.5 bits), Expect = 3.5e-54, Sum P(3) = 3.5e-54
Identities = 63/145 (43%), Positives = 90/145 (62%)
Query: 1 MGVPKFFRYISERYPCLSEVVRE------------YQIP----EFDNLYLDMNGIIHNCS 44
MG+P FFR++ ++Y L + E + P E+DNLYLDMNGIIH C+
Sbjct: 1 MGIPAFFRWLIDKYGGLIQETTEPREADGGRSVVDFTTPNPNGEYDNLYLDMNGIIHPCA 60
Query: 45 HPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRS 104
HP + P + E I Q I+ Y+++LF +I+P+KL +MA+DGVAPRAKMNQQR RRFR+
Sbjct: 61 HP-EKGPKPKSIEDMI-QSIYEYLDLLFAIIRPRKLIYMAVDGVAPRAKMNQQRTRRFRA 118
Query: 105 AKEAEVLEQKAKEKGERLPTEKRFD 129
A ++ + K+K L E+ +D
Sbjct: 119 ALDSRL----DKDKEAALWRERIYD 139
Score = 51 (23.0 bits), Expect = 3.4e-93, Sum P(3) = 3.4e-93
Identities = 16/86 (18%), Positives = 33/86 (38%)
Query: 1446 NDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNGGRTAT- 1504
N+ + N + N N + ++ NN +Y + + Y N+ + NG +
Sbjct: 934 NNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNYNNYNNNNNYKNNNYNNNGNYNGNNSNNY 993
Query: 1505 -PDTSFTTKLTNLFNRSSSNDTEAEN 1529
+ ++ N +N S +N N
Sbjct: 994 NNNNNYNNSNYNNYNNSYNNGNNYNN 1019
Score = 51 (23.0 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 998 TEEGAKRHNIGLNIKFSRKNEEV-VGF-----TRRDETTKKWFYT-EQVVTLIKNYMKQF 1050
TEE R+ +G ++ F K+ + F T+ E + K + T E V L K M
Sbjct: 774 TEEEVDRNTLGHDLMFCHKDSNINSAFKEGSVTQLPENSSKIYGTIEDVSALAKKKMPPL 833
Query: 1051 PEVFGFLKDHSS 1062
+ F ++SS
Sbjct: 834 MDAVAFKYNNSS 845
Score = 45 (20.9 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 1446 NDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVK-YTNSPSDNGGRTAT 1504
N+ Y + N + N N + ++ NN +Y + + Y N+ +N G
Sbjct: 928 NNRYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNYNNYNNNNNYKNNNYNNNGNY-N 986
Query: 1505 PDTSFTTKLTNLFNRSSSND 1524
+ S N +N S+ N+
Sbjct: 987 GNNSNNYNNNNNYNNSNYNN 1006
Score = 38 (18.4 bits), Expect = 8.4e-91, Sum P(4) = 8.4e-91
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 1327 HKLNQVNTSSAPKEKPRTSEQNQIKSNGN 1355
+ +N+ P+++ + ++N+ +N N
Sbjct: 1141 NNINRNQQQQQPQQQQQQQQKNKFNNNSN 1169
Score = 38 (18.4 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQP 1091
I + D P +GE ++ V + QP
Sbjct: 198 IIISDASVPGEGEHKIMDYVRHQRAQP 224
Score = 37 (18.1 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 1461 NIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNG 1499
N I I+ + AK P KY NS NG
Sbjct: 811 NSSKIYGTIEDVSALAKKKMPPLMDAVAFKYNNSSVPNG 849
Score = 37 (18.1 bits), Expect = 8.4e-91, Sum P(4) = 8.4e-91
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 1232 NSNPHVKNINVMQSRGERNTNYAQVTRQPQRTTFYKENAPLVNSN 1276
N+N + N N + N NY YK N N N
Sbjct: 941 NNNNNNNNNNNNNNNNNNNNNYNNYNNYNNNNN-YKNNNYNNNGN 984
>FB|FBgn0031868 [details] [associations]
symbol:Rat1 species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0006355 GO:GO:0046872 GO:GO:0006397
GO:GO:0003676 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 OMA:RKRMKRD EMBL:BT021334
EMBL:BT056259 RefSeq:NP_609082.1 UniGene:Dm.8576
ProteinModelPortal:Q9VM71 SMR:Q9VM71 MINT:MINT-855535 STRING:Q9VM71
PaxDb:Q9VM71 EnsemblMetazoa:FBtr0079345 EnsemblMetazoa:FBtr0332324
GeneID:33964 KEGG:dme:Dmel_CG10354 UCSC:CG10354-RA CTD:33964
FlyBase:FBgn0031868 InParanoid:Q9VM71 OrthoDB:EOG41VHHV
PhylomeDB:Q9VM71 GenomeRNAi:33964 NextBio:786169 Bgee:Q9VM71
GermOnline:CG10354 Uniprot:Q9VM71
Length = 908
Score = 557 (201.1 bits), Expect = 4.0e-93, Sum P(4) = 4.0e-93
Identities = 124/369 (33%), Positives = 187/369 (50%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E KF + LS++R+YL+ L+ P L F +S E +DDWV M F +GNDF+P+LP L
Sbjct: 300 EVKFIFVRLSVLREYLKQT---LEMPN-LPFEYSFERALDDWVFMCFFVGNDFLPHLPSL 355
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYA-DIQ 434
I GA+ L ++Y++ + GY+ + G +NL R + +T L + + + F+ + + Q
Sbjct: 356 EIREGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQ 415
Query: 435 YLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDD-----DYDDGTXXXXXXXXXXXXXX 489
+ +K + S A+ + +Y +
Sbjct: 416 FKARDKARKRQERNQDHGSLNQSAFGASAVGPNSQQRSVGNYKEEAAALRNRKRTSDMAN 475
Query: 490 XXXXXXWRTNFFSEFGQH--KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNG 547
N + K YY K D A + A Y+R + W L YYY G
Sbjct: 476 LDDEDEEENNDEVRLWEDGFKDRYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQG 535
Query: 548 CVSWSWYYPHHYAPYISDIKDFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQN 606
C SW+WY+P+HYAP+ SD + L+ +E G +PF P +QL+ V PAAS +PEP+
Sbjct: 536 CASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAK 595
Query: 607 LMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSR 666
LM+ SPI+++YPE+F DLNGKK W+ V L+PF+DE +L KA+ LT EE R
Sbjct: 596 LMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKR 655
Query: 667 NRHGPMLVY 675
N+ G +Y
Sbjct: 656 NKRGDNYLY 664
Score = 437 (158.9 bits), Expect = 4.0e-93, Sum P(4) = 4.0e-93
Identities = 94/171 (54%), Positives = 116/171 (67%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA-----EV--LEQKAKEKGERLPTEKR-- 188
P+KL +MAIDGVAPRAKMNQQR RRFR+AKE E+ + ++ +G +LP EK
Sbjct: 95 PRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKG 154
Query: 189 --FDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGE 246
FDSNCITPGTPFM RL + L YFV + + WK + VILS PGE
Sbjct: 155 EHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNP---------AWKGIKVILSDANVPGE 205
Query: 247 GEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREE 297
GEHKIMDYIR +++PD++PN +H L G DADLIMLGL THEP F+++REE
Sbjct: 206 GEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREE 256
Score = 263 (97.6 bits), Expect = 6.1e-75, Sum P(4) = 6.1e-75
Identities = 57/106 (53%), Positives = 74/106 (69%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF I+ LF +++P+KL +MAIDG
Sbjct: 48 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFECIDRLFGIVRPRKLLYMAIDG 105
Query: 88 VAPRAKMNQQRGRRFRSAKEA-----EV--LEQKAKEKGERLPTEK 126
VAPRAKMNQQR RRFR+AKE E+ + ++ +G +LP EK
Sbjct: 106 VAPRAKMNQQRSRRFRAAKETTEKRLEIARIREELLSRGCKLPPEK 151
Score = 64 (27.6 bits), Expect = 4.0e-93, Sum P(4) = 4.0e-93
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFD---NLYLD 35
MGVP FFR++S +YP + E + + D N+Y D
Sbjct: 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYED 38
Score = 50 (22.7 bits), Expect = 4.0e-93, Sum P(4) = 4.0e-93
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 1232 NSNPHVKNINVMQSRGERNTNYAQVTRQPQRTTFYK 1267
NSN +N N G RN NY Q Q+ Y+
Sbjct: 873 NSNQQQRNFN--NYNGPRNNNYQQQGGSRQQNQNYR 906
Score = 41 (19.5 bits), Expect = 6.9e-19, Sum P(4) = 6.9e-19
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRP--CGAAVVDAKVVSL 1112
+ L D P +GE ++ + + QP + CGA DA ++ L
Sbjct: 195 VILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGA---DADLIML 241
Score = 38 (18.4 bits), Expect = 1.4e-18, Sum P(4) = 1.4e-18
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 154 KMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGT 198
K Q+R +F++ +A +++ ++ G + F ++ + P +
Sbjct: 407 KSRQRREEQFKARDKARKRQERNQDHGSL--NQSAFGASAVGPNS 449
>UNIPROTKB|B4DZC3 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016235
GO:GO:0016070 EMBL:AL158013 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOVERGEN:HBG036677 EMBL:AL117332 UniGene:Hs.255932
HGNC:HGNC:12836 ChiTaRS:XRN2 EMBL:AK302846 IPI:IPI01012839
SMR:B4DZC3 STRING:B4DZC3 Ensembl:ENST00000539513 Uniprot:B4DZC3
Length = 896
Score = 458 (166.3 bits), Expect = 2.6e-92, Sum P(3) = 2.6e-92
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 12 EDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 71
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 72 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 126
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 127 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 182
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 183 IMLGLATHEPNFTIIREEFKPN 204
Score = 387 (141.3 bits), Expect = 2.6e-92, Sum P(3) = 2.6e-92
Identities = 72/164 (43%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 463 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 522
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 523 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 582
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 583 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 626
Score = 232 (86.7 bits), Expect = 4.2e-68, Sum P(3) = 4.2e-68
Identities = 54/104 (51%), Positives = 71/104 (68%)
Query: 36 MNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMN 95
MNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDGVAPRAKMN
Sbjct: 1 MNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMN 58
Query: 96 QQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
QQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 59 QQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 102
Score = 220 (82.5 bits), Expect = 2.6e-92, Sum P(3) = 2.6e-92
Identities = 51/147 (34%), Positives = 76/147 (51%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 244 EGEFIFLRLNVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 299
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I A+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 300 EIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 356
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 357 -EDSFRRR-----QKEKRKRMKRDQPA 377
Score = 41 (19.5 bits), Expect = 4.9e-56, Sum P(3) = 4.9e-56
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1247 GERNTNYAQVTRQPQRTTF----YKENAPLVNSNLQVTS 1281
G RN+ +QV P++ + ++P ++ N TS
Sbjct: 390 GSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTS 428
Score = 40 (19.1 bits), Expect = 6.3e-56, Sum P(3) = 6.3e-56
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 834 EPLLPWNRMLQTQNAAFQ---PNQYQML 858
Score = 40 (19.1 bits), Expect = 6.3e-56, Sum P(3) = 6.3e-56
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 449 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 479
Score = 40 (19.1 bits), Expect = 6.3e-56, Sum P(3) = 6.3e-56
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 1488 EVKYTNSPSDNGGRTATPDTSFTTK-----LTNLFNRSSSNDTEAE 1528
+ Y +N + +P+TSFT+ L + ++ +D+E E
Sbjct: 405 QAAYEMRMQNNSSPSISPNTSFTSDGSPSPLGGIKRKAEDSDSEPE 450
Score = 37 (18.1 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 132 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 169
>UNIPROTKB|F1PB11 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 EMBL:AAEX03013750
Ensembl:ENSCAFT00000008379 Uniprot:F1PB11
Length = 948
Score = 456 (165.6 bits), Expect = 1.1e-91, Sum P(4) = 1.1e-91
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 112 EQKAKEKGERLPTEKRFDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE- 168
E K K E F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE
Sbjct: 64 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 123
Query: 169 --AEVLEQKAKE----KGERLPTEK---RFDSNCITPGTPFMCRLHQQLRYFVKLKITTD 219
A V +Q+ +E KG LP E+ RFDSNCITPGT FM L + LRY++ D
Sbjct: 124 MEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI-----AD 178
Query: 220 KLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADL 279
+L D WK++ VILS PGEGEHKIMDYIR +++P+++PN HCL G DADL
Sbjct: 179 RLNNDP----GWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADL 234
Query: 280 IMLGLCTHEPYFSLLREEVKFN 301
IMLGL THEP F+++REE K N
Sbjct: 235 IMLGLATHEPNFTIIREEFKPN 256
Score = 388 (141.6 bits), Expect = 1.1e-91, Sum P(4) = 1.1e-91
Identities = 72/164 (43%), Positives = 98/164 (59%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + R + Y+ + W L YYY GC SW WYYP HYAP+ SD +
Sbjct: 515 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 574
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ + +E G +PF P +QL+ V PAAS LP ++ LM+ +S I+++YPE+FA D
Sbjct: 575 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 634
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
LNGKK W+ V L+PF+DE +L A++ V LT EE RN G
Sbjct: 635 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETKRNSLG 678
Score = 277 (102.6 bits), Expect = 2.0e-72, Sum P(4) = 2.0e-72
Identities = 62/112 (55%), Positives = 79/112 (70%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++ IF YI+ LF +++P++L +MAIDG
Sbjct: 45 EFDNLYLDMNGIIHPCTHPEDK-PAPK-NEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDG 102
Query: 88 VAPRAKMNQQRGRRFRSAKE---AEVLEQKAKE----KGERLPTEK---RFD 129
VAPRAKMNQQR RRFR++KE A V +Q+ +E KG LP E+ RFD
Sbjct: 103 VAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFD 154
Score = 226 (84.6 bits), Expect = 1.1e-91, Sum P(4) = 1.1e-91
Identities = 52/147 (35%), Positives = 77/147 (52%)
Query: 316 ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDL 375
E +F L L+++R+YLE E P F F +E IDDWV M F +GNDF+P+LP L
Sbjct: 296 EGEFIFLRLNVLREYLERELTMASLP----FTFDVERSIDDWVFMCFFVGNDFLPHLPSL 351
Query: 376 HIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQY 435
I GA+ L +Y+ V+ GY+ E GY+NL+R + + + + F+++ D
Sbjct: 352 EIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDD--- 408
Query: 436 LEGKMGKKFSDVFHKEKSKEMDPDLAA 462
E ++ KEK K M D A
Sbjct: 409 -EDSFRRR-----QKEKRKRMKRDQPA 429
Score = 41 (19.5 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1247 GERNTNYAQVTRQPQRTTF----YKENAPLVNSNLQVTS 1281
G RN+ +QV P++ + ++P ++ N TS
Sbjct: 442 GSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSFTS 480
Score = 40 (19.1 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 580 EPFLPFQQLLAVLPAASKELLPEPYQNL 607
EP LP+ ++L AA + P YQ L
Sbjct: 886 EPLLPWNRMLQTQNAAFQ---PNQYQML 910
Score = 40 (19.1 bits), Expect = 2.2e-55, Sum P(4) = 2.2e-55
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 601 PEPYQNLMTLENSPILEYYPEEFATDLNGKK 631
PEP N+ E YY +F D +K
Sbjct: 501 PEPEDNVRLWEAGWKQRYYKNKFDVDAADEK 531
Score = 39 (18.8 bits), Expect = 1.1e-91, Sum P(4) = 1.1e-91
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 996 DSTEEGAKRHNIGLNIKFSRKNEEVVGF 1023
D T E KR+++G ++ F K+ + F
Sbjct: 666 DLTPEETKRNSLGGDVLFVGKHHPLHDF 693
Score = 38 (18.4 bits), Expect = 6.6e-56, Sum P(3) = 6.6e-56
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 1488 EVKYTNSPSDNGGRTATPDTSFTTK-----LTNLFNRSSSNDTEAE 1528
+ Y +N + +P+TSFT+ + + ++ +D+E E
Sbjct: 457 QAAYEMRMQNNSSPSISPNTSFTSDGSPSPIGGIKRKAEDSDSEPE 502
Score = 37 (18.1 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 1638 PG-DDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIP 1674
PG ++T ++ P G D R AQP P
Sbjct: 184 PGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDP 221
>WB|WBGene00006964 [details] [associations]
symbol:xrn-2 species:6239 "Caenorhabditis elegans"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IMP;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040028 "regulation of vulval
development" evidence=IGI] [GO:0010587 "miRNA catabolic process"
evidence=IGI;IMP;IDA] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IMP] [GO:0040034 "regulation of
development, heterochronic" evidence=IGI] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0006355 GO:GO:0046872 GO:GO:0018996 GO:GO:0008270
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003676
EMBL:AL110490 GO:GO:0040034 GO:GO:0040028 GO:GO:0000738
GO:GO:0060965 GO:GO:0006353 GO:GO:0010587 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 425 (154.7 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 88/171 (51%), Positives = 115/171 (67%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE-----AEVLEQKAK--EKGERLPTEKR-- 188
P++L +MAIDGVAPRAKMNQQR RRFR++KE A + EQ+ + +G +P +K+
Sbjct: 94 PRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEE 153
Query: 189 --FDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGE 246
FDSNCITPGTPFM RL LRY++ ++T D W + + +ILS PGE
Sbjct: 154 AHFDSNCITPGTPFMARLADALRYYIHDRVTNDASWAN---------IEIILSDANVPGE 204
Query: 247 GEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREE 297
GEHKIMDY+R + P ++PN HCL G DADLIMLG+ THE F+++REE
Sbjct: 205 GEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE 255
Score = 394 (143.8 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 72/173 (41%), Positives = 100/173 (57%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D E A Y+ + W L YYY GC SW WY+P+HYAP+ SD +
Sbjct: 543 KDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFE 602
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ +PF P +QL++V PAASK+ LP +Q LM ++SPI++ YP +F D
Sbjct: 603 TVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRID 662
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSN 679
LNGKK W+ V L+PF+DE +L+ + +V LT EE+ RN GP ++ N
Sbjct: 663 LNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIFIGRN 715
Score = 273 (101.2 bits), Expect = 3.7e-72, Sum P(4) = 3.7e-72
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++F IF YI+ ++ +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDR-PAPK-NEDEMFALIFEYIDRIYSIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTE 125
VAPRAKMNQQR RRFR++KE E +E+ RL E
Sbjct: 105 VAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAE 142
Score = 223 (83.6 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 50/139 (35%), Positives = 75/139 (53%)
Query: 308 GSQIVTPE--ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIG 365
G PE E F L + ++R+YLE E L P L F F +E +DDWV + F +G
Sbjct: 287 GDDYCKPEQREKNFIFLRIPVLREYLEKE---LSMPN-LPFKFDVERALDDWVFLCFFVG 342
Query: 366 NDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQ 425
NDF+P+LP L I GA+ L K+Y+E++ + GY+ + G L R E + L + E
Sbjct: 343 NDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEI 402
Query: 426 FREKYADIQ-YLEGKMGKK 443
F+ + D + + E + KK
Sbjct: 403 FKRRQQDEERFQENQRNKK 421
Score = 78 (32.5 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR+++++YP + VV + + D D N + +C+ PN N F
Sbjct: 1 MGVPAFFRWLTKKYP--ATVVNANEDRQRDQ---DGNRVPVDCTQPNPNFQEF 48
Score = 42 (19.8 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 154 KMNQQRG--RRF--RSAKEAEVLEQKAKEKGERL----PT-------EKRFDSNCITPGT 198
K RG R F R+ K E +Q A+ K + L PT + +DS PG
Sbjct: 700 KQRNTRGPNRIFIGRNHKSFEFFQQVAESKSDDLVPLDPTLLNGVSGKIAYDSTATAPGL 759
Query: 199 PFM 201
PF+
Sbjct: 760 PFV 762
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 1064 DIYLRDDVFPHQGEQRVAQIVSWLKEQP-HAKAEVRP-CGAAVVDAKVVSL 1112
+I L D P +GE ++ V + P H V CGA DA ++ L
Sbjct: 193 EIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGA---DADLIML 240
Score = 38 (18.4 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1472 NNITAKTDYPTTSTFPEVKYTNSP 1495
N ++ K Y +T+T P + + SP
Sbjct: 742 NGVSGKIAYDSTATAPGLPFV-SP 764
>UNIPROTKB|Q9U299 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6239
"Caenorhabditis elegans" [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0000738
"DNA catabolic process, exonucleolytic" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0006355 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 GO:GO:0006397 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:AL110490 GO:GO:0040034 GO:GO:0040028
GO:GO:0000738 GO:GO:0060965 GO:GO:0006353 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 425 (154.7 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 88/171 (51%), Positives = 115/171 (67%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE-----AEVLEQKAK--EKGERLPTEKR-- 188
P++L +MAIDGVAPRAKMNQQR RRFR++KE A + EQ+ + +G +P +K+
Sbjct: 94 PRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEE 153
Query: 189 --FDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGE 246
FDSNCITPGTPFM RL LRY++ ++T D W + + +ILS PGE
Sbjct: 154 AHFDSNCITPGTPFMARLADALRYYIHDRVTNDASWAN---------IEIILSDANVPGE 204
Query: 247 GEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREE 297
GEHKIMDY+R + P ++PN HCL G DADLIMLG+ THE F+++REE
Sbjct: 205 GEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE 255
Score = 394 (143.8 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 72/173 (41%), Positives = 100/173 (57%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D E A Y+ + W L YYY GC SW WY+P+HYAP+ SD +
Sbjct: 543 KDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFE 602
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ +PF P +QL++V PAASK+ LP +Q LM ++SPI++ YP +F D
Sbjct: 603 TVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRID 662
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSN 679
LNGKK W+ V L+PF+DE +L+ + +V LT EE+ RN GP ++ N
Sbjct: 663 LNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIFIGRN 715
Score = 273 (101.2 bits), Expect = 3.7e-72, Sum P(4) = 3.7e-72
Identities = 54/98 (55%), Positives = 71/98 (72%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++F IF YI+ ++ +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDR-PAPK-NEDEMFALIFEYIDRIYSIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTE 125
VAPRAKMNQQR RRFR++KE E +E+ RL E
Sbjct: 105 VAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAE 142
Score = 223 (83.6 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 50/139 (35%), Positives = 75/139 (53%)
Query: 308 GSQIVTPE--ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIG 365
G PE E F L + ++R+YLE E L P L F F +E +DDWV + F +G
Sbjct: 287 GDDYCKPEQREKNFIFLRIPVLREYLEKE---LSMPN-LPFKFDVERALDDWVFLCFFVG 342
Query: 366 NDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQ 425
NDF+P+LP L I GA+ L K+Y+E++ + GY+ + G L R E + L + E
Sbjct: 343 NDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEI 402
Query: 426 FREKYADIQ-YLEGKMGKK 443
F+ + D + + E + KK
Sbjct: 403 FKRRQQDEERFQENQRNKK 421
Score = 78 (32.5 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR+++++YP + VV + + D D N + +C+ PN N F
Sbjct: 1 MGVPAFFRWLTKKYP--ATVVNANEDRQRDQ---DGNRVPVDCTQPNPNFQEF 48
Score = 42 (19.8 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 154 KMNQQRG--RRF--RSAKEAEVLEQKAKEKGERL----PT-------EKRFDSNCITPGT 198
K RG R F R+ K E +Q A+ K + L PT + +DS PG
Sbjct: 700 KQRNTRGPNRIFIGRNHKSFEFFQQVAESKSDDLVPLDPTLLNGVSGKIAYDSTATAPGL 759
Query: 199 PFM 201
PF+
Sbjct: 760 PFV 762
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 1064 DIYLRDDVFPHQGEQRVAQIVSWLKEQP-HAKAEVRP-CGAAVVDAKVVSL 1112
+I L D P +GE ++ V + P H V CGA DA ++ L
Sbjct: 193 EIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGA---DADLIML 240
Score = 38 (18.4 bits), Expect = 1.2e-91, Sum P(5) = 1.2e-91
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1472 NNITAKTDYPTTSTFPEVKYTNSP 1495
N ++ K Y +T+T P + + SP
Sbjct: 742 NGVSGKIAYDSTATAPGLPFV-SP 764
>UNIPROTKB|Q60SG7 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 EMBL:HE600928 GO:GO:0008409
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 STRING:Q60SG7 PRIDE:Q60SG7
EnsemblMetazoa:CBG20900 WormBase:CBG20900 HOGENOM:HOG000205514
Uniprot:Q60SG7
Length = 976
Score = 428 (155.7 bits), Expect = 3.0e-91, Sum P(5) = 3.0e-91
Identities = 92/185 (49%), Positives = 120/185 (64%)
Query: 128 FDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE-----AEVLEQKAK--E 178
F++I F P++L +MAIDGVAPRAKMNQQR RRFR++KE A + EQ+ +
Sbjct: 82 FEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKAASIEEQRRRLIA 141
Query: 179 KGERLPTEKR------FDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWK 232
+G +P +K+ FDSNCITPGTPFM RL LRY++ ++T D W
Sbjct: 142 EGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDP---------AWA 192
Query: 233 DVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFS 292
++ +ILS PGEGEHKIMDYIR + P ++PN HCL G DADLIMLG+ THE F+
Sbjct: 193 NIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFN 252
Query: 293 LLREE 297
++REE
Sbjct: 253 IIREE 257
Score = 398 (145.2 bits), Expect = 3.0e-91, Sum P(5) = 3.0e-91
Identities = 73/173 (42%), Positives = 102/173 (58%)
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
K YY K D + A Y+ + W L YYY GC SW WY+P+HYAP+ SD +
Sbjct: 544 KERYYRAKFDVGSDDVDFRHRVAWAYVEGLCWVLRYYYQGCSSWDWYFPYHYAPFASDFE 603
Query: 568 DFSHLNLKYEMG-EPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATD 626
+ +PF P +QL++V PAASK+ LP +Q LMT + SPI++ YP +F D
Sbjct: 604 TVGEFKPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMTEDESPIIDLYPADFRID 663
Query: 627 LNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSN 679
LNGKK W+ V L+PF+DE +L++ + +V LTDEE+ RN GP ++ N
Sbjct: 664 LNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKYRNTRGPNRIFIGRN 716
Score = 269 (99.8 bits), Expect = 2.8e-72, Sum P(4) = 2.8e-72
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C+HP D P + E ++F IF YI+ +F +++P++L +MAIDG
Sbjct: 47 EFDNLYLDMNGIIHPCTHPEDR-PAPK-NEDEMFALIFEYIDRIFSIVRPRRLLYMAIDG 104
Query: 88 VAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTE 125
VAPRAKMNQQR RRFR++KE +E+ RL E
Sbjct: 105 VAPRAKMNQQRSRRFRASKEMAEKAASIEEQRRRLIAE 142
Score = 223 (83.6 bits), Expect = 3.0e-91, Sum P(5) = 3.0e-91
Identities = 49/139 (35%), Positives = 76/139 (54%)
Query: 308 GSQIVTPE--ETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIG 365
G + PE E F L + ++R+YLE E P L F F++E +DDWV + F +G
Sbjct: 289 GDEYCKPEQREKNFIFLRIPVLREYLEKEMAM---PN-LPFQFNLERALDDWVFLCFFVG 344
Query: 366 NDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQ 425
NDF+P+LP L I GA+ L K+Y+E++ + GY+ + G L R E + L + E
Sbjct: 345 NDFLPHLPSLEIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEI 404
Query: 426 FREKYADIQ-YLEGKMGKK 443
F+ + D + + E + KK
Sbjct: 405 FKRRQQDEERFKENQKNKK 423
Score = 66 (28.3 bits), Expect = 3.0e-91, Sum P(5) = 3.0e-91
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHF 53
MGVP FFR+++++YP + VV + + +D + +C+ PN N F
Sbjct: 1 MGVPAFFRWLTKKYP--ATVVNANEDRQRG---VDGRRVPVDCTQPNPNFQEF 48
Score = 41 (19.5 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 1493 NSPSDNGGRTATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSP 1543
++P + G + S + FN ++ + +A K ++ +QSP
Sbjct: 456 SAPMHHSGESTRQMASDARQAAMQFNATNDANAQAAANLKALLNVKGEQSP 506
Score = 39 (18.8 bits), Expect = 3.0e-91, Sum P(5) = 3.0e-91
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1472 NNITAKTDYPTTSTFPEVKYTNSP 1495
N ++ K Y +T+T P + + SP
Sbjct: 743 NGVSGKISYDSTATAPGLPFP-SP 765
Score = 38 (18.4 bits), Expect = 2.1e-54, Sum P(4) = 2.1e-54
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1475 TAKTDYPTTSTFPEVKYTNSPSDN 1498
T K+ YPT + E KY N+ N
Sbjct: 688 TLKSVYPTLTD--EEKYRNTRGPN 709
Score = 37 (18.1 bits), Expect = 2.9e-35, Sum P(4) = 2.9e-35
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 574 LKYEMGEPFLPFQ 586
L+ EM P LPFQ
Sbjct: 314 LEKEMAMPNLPFQ 326
Score = 37 (18.1 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 189 FDSNCITPGTPF 200
+DS PG PF
Sbjct: 751 YDSTATAPGLPF 762
>TAIR|locus:2020073 [details] [associations]
symbol:XRN4 "exoribonuclease 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA;IGI;IMP] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA;IMP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;IMP]
[GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid"
evidence=IMP] [GO:0009826 "unidimensional cell growth"
evidence=IMP] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=IMP] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=IMP] [GO:0010587 "miRNA catabolic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000003
"reproduction" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006487
"protein N-linked glycosylation" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016049 "cell growth" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009873
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
EMBL:AC005287 GO:GO:0009826 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0040029 GO:GO:0031087 GO:GO:0000291 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 KO:K12619 EMBL:AF286718 EMBL:AY064012
EMBL:AY091411 IPI:IPI00520526 PIR:G96586 RefSeq:NP_175851.1
UniGene:At.16935 ProteinModelPortal:Q9FQ04 SMR:Q9FQ04 STRING:Q9FQ04
PaxDb:Q9FQ04 PRIDE:Q9FQ04 EnsemblPlants:AT1G54490.1 GeneID:841891
KEGG:ath:AT1G54490 TAIR:At1g54490 InParanoid:Q9FQ04 OMA:SWEWYFP
PhylomeDB:Q9FQ04 ProtClustDB:CLSN2682416 Genevestigator:Q9FQ04
Uniprot:Q9FQ04
Length = 947
Score = 413 (150.4 bits), Expect = 5.5e-86, Sum P(4) = 5.5e-86
Identities = 91/191 (47%), Positives = 124/191 (64%)
Query: 128 FDFITLKFCF--PKKLFFMAIDGVAPRAKMNQQRGRRFRSAK---EAEVLEQKAKE---- 178
F++I F P+K+ ++AIDGVAPRAKMNQQR RRFR+AK EAE E++ ++
Sbjct: 83 FEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEM 142
Query: 179 KGERLPTEKRF---DSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVC 235
+G+ L +++ DSN ITPGTPFM L L+Y+++ ++ + W+ V
Sbjct: 143 EGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQSRLNHNP---------GWRYVK 193
Query: 236 VILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLR 295
VILS PGEGEHKIM YIR ++ P ++PN RHCLYGLDADLIML L THE +FS+LR
Sbjct: 194 VILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILR 253
Query: 296 EEVKFNTKSNK 306
E + + + K
Sbjct: 254 EVITYPGQQEK 264
Score = 387 (141.3 bits), Expect = 5.5e-86, Sum P(4) = 5.5e-86
Identities = 74/186 (39%), Positives = 107/186 (57%)
Query: 507 HKTDYYHYKLDYA--KVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYIS 564
+K YY K + T ++ +D Y+ + W YYY G SW W+YP+HYAP+ S
Sbjct: 444 YKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFAS 503
Query: 565 DIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFA 624
D+K+ L + + +GEPF PF QL+ LPAAS LP Y+ LMT +SPIL++YP +F
Sbjct: 504 DLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKLMTDPSSPILKFYPADFE 563
Query: 625 TDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGT 684
D+NGK+ W+ + +PFI+E L+ A +E LT EE+ RN L+Y + LG
Sbjct: 564 LDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQ 623
Query: 685 ALAPDY 690
+ Y
Sbjct: 624 RILQYY 629
Score = 268 (99.4 bits), Expect = 1.2e-70, Sum P(4) = 1.2e-70
Identities = 64/147 (43%), Positives = 92/147 (62%)
Query: 28 EFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDG 87
EFDNLYLDMNGIIH C HP + P T +F+ +F YI+ LF +++P+K+ ++AIDG
Sbjct: 48 EFDNLYLDMNGIIHPCFHP-EGKPA-PATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDG 105
Query: 88 VAPRAKMNQQRGRRFRSAK---EAEVLEQKAKE----KGERLPTEKRFDFITLKFCFPKK 140
VAPRAKMNQQR RRFR+AK EAE E++ ++ +G+ L +++ + P
Sbjct: 106 VAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGT 165
Query: 141 LFFMAIDGVAPR----AKMNQQRGRRF 163
F MAI VA + +++N G R+
Sbjct: 166 PF-MAILSVALQYYIQSRLNHNPGWRY 191
Score = 186 (70.5 bits), Expect = 5.5e-86, Sum P(4) = 5.5e-86
Identities = 41/126 (32%), Positives = 74/126 (58%)
Query: 304 SNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFL 363
SN + I ++ K+ L++ ++R+YL+ E + +P F + E IIDD+V + F
Sbjct: 284 SNNAAADIPIHKK-KYQFLNIWVLREYLQYELA-IPDP---PFMINFERIIDDFVFLCFF 338
Query: 364 IGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDF 423
+GNDF+P++P L I GA+ LL VY++ + GY+ + G + L R E F+ +A +
Sbjct: 339 VGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNED 398
Query: 424 EQFREK 429
+ F+++
Sbjct: 399 KIFQKR 404
Score = 72 (30.4 bits), Expect = 5.5e-86, Sum P(4) = 5.5e-86
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 1 MGVPKFFRYISERYP-CLSEVVRE 23
MGVP F+R++++RYP +S+VV E
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEE 24
Score = 46 (21.3 bits), Expect = 5.0e-20, Sum P(5) = 5.0e-20
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 1065 IYLRDDVFPHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAV-VDAKVVSLIEHAV 1117
+ L D P +GE ++ + + P R C + D ++SL H V
Sbjct: 194 VILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEV 247
Score = 44 (20.5 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 1410 TGEITANKMETKPEKATCPQDKEVEEITNGTQTITMNDLYQSANKRSENGFNIPSISDLI 1469
+GE+ +++E + +DK ++ T Q++ N+ + ++R + I D I
Sbjct: 378 SGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQRSRRDPSEVPPEPIDDKI 437
Query: 1470 K 1470
K
Sbjct: 438 K 438
Score = 43 (20.2 bits), Expect = 3.8e-50, Sum P(4) = 3.8e-50
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1559 ELSF-EEKHSMAAKSKNETTPTIKTEMRKII 1588
+L F EEK +AA K E T T++ + R +
Sbjct: 578 KLPFIEEKLLLAATRKLEETLTVEEQQRNSV 608
Score = 40 (19.1 bits), Expect = 4.6e-35, Sum P(4) = 4.6e-35
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 518 YAKVTNEVLRDQAECYIRAIQWN 540
Y + EVL D+ E +I+A+ N
Sbjct: 374 YLTDSGEVLLDRVEHFIQAVAVN 396
Score = 40 (19.1 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 93 KMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDFITL 133
K+ Q+R R +S E ++Q+++ +P E D I L
Sbjct: 399 KIFQKRTRIKQSMDNNEEMKQRSRRDPSEVPPEPIDDKIKL 439
Score = 37 (18.1 bits), Expect = 3.9e-55, Sum P(4) = 3.9e-55
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 154 KMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTE 186
K+ Q+R R +S E ++Q+++ +P E
Sbjct: 399 KIFQKRTRIKQSMDNNEEMKQRSRRDPSEVPPE 431
>GENEDB_PFALCIPARUM|PF11_0074 [details] [associations]
symbol:PF11_0074 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159
PROSITE:PS50817 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE014186 GO:GO:0016539 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 302 (111.4 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 56/144 (38%), Positives = 86/144 (59%)
Query: 502 SEF-GQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYA 560
SEF + K Y+Y + + +++ + YI + WNLHYY+ GC SW W YP+HYA
Sbjct: 560 SEFTDEQKYKKYYYLHKFGLEDPKEIQNIVKKYIEGLFWNLHYYHFGCASWYWEYPYHYA 619
Query: 561 PYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYP 620
P SD+ F + +E G+P+ F L++VLP K LLP+ Y+N+ +E+ + ++P
Sbjct: 620 PLCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIY-VEDE-VKSFFP 677
Query: 621 EEFATDLNGKKQDWEAVVLIPFID 644
E D NGKK+ WE +V +PFI+
Sbjct: 678 ENVKIDPNGKKETWEYIVHLPFIN 701
Score = 238 (88.8 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 43/105 (40%), Positives = 71/105 (67%)
Query: 2 GVPKFFRYISERYPCL-SEVVREYQIPEFDNLYLDMNGIIHNCSHPNDND-PHFRITEKQ 59
G+P+ +++++ YP + E++ + D Y+DMNG+IH+C+H N P + E +
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNEKQKSVDIFYIDMNGVIHHCTHANKEKLPIY--DEHE 103
Query: 60 IFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRS 104
+F +I Y++ LF +I+PKKL ++ +DGV+P+AKMNQQR RRF S
Sbjct: 104 LFSNILQYLKNLFYLIKPKKLIYIGVDGVSPKAKMNQQRKRRFLS 148
Score = 196 (74.1 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 49/118 (41%), Positives = 66/118 (55%)
Query: 185 TEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETP 244
T F+ NCIT GT FM +++ L + K+ + K++ + VI SG +
Sbjct: 158 TSNLFNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVF----------EFDVIFSGSDVA 206
Query: 245 GEGEHKIMDYIRYMKSKPDYN-PNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFN 301
GEGEHKI+ YIR K D N N HC+YGLDADLIML L TH +LR++ K +
Sbjct: 207 GEGEHKILKYIRE-NCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRDKFKIS 263
Score = 141 (54.7 bits), Expect = 1.7e-39, Sum P(4) = 1.7e-39
Identities = 37/152 (24%), Positives = 79/152 (51%)
Query: 319 FFLLHLSLMRDYLELEFG----KLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPD 374
F +L + +R+ ++ + KLK+ + FSI ++DD V + FL+GNDF+P++P+
Sbjct: 441 FEILDIYKLRNSIKTQIATYINKLKKEK--NIVFSISRVVDDIVFLSFLVGNDFLPHIPN 498
Query: 375 LHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQ 434
+ I G++ + Y + YI ++++R + L L++ +FE F+++ +
Sbjct: 499 IDINEGSMNEILNSYIFYIYKYSNYITYKDKVHIERLKIILKILSAQEFEYFKKRGINEN 558
Query: 435 YLEGKMGKKFSDVFHKEKSKEMDP-DLAALIK 465
E +K+ ++ K DP ++ ++K
Sbjct: 559 ISEFTDEQKYKKYYYLHKFGLEDPKEIQNIVK 590
Score = 135 (52.6 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PKKL ++ +DGV+P+AKMNQQR RRF S K + T F+ NCIT G
Sbjct: 121 PKKLIYIGVDGVSPKAKMNQQRKRRFLSIF-------KINDNDN---TSNLFNPNCITTG 170
Query: 198 TPFMCRLHQQLRYFVKL 214
T FM +++ L + K+
Sbjct: 171 TDFMYKINLSLNKWFKI 187
Score = 62 (26.9 bits), Expect = 5.5e-32, Sum P(3) = 5.5e-32
Identities = 28/131 (21%), Positives = 47/131 (35%)
Query: 1440 TQTITMNDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNG 1499
TQ ND Y S N+ + N + I+ N +KT+ V+Y N+ N
Sbjct: 277 TQNTFNNDEYNSFNEPQNDNINYNEEGENIQLNE-KSKTNESLVKEENNVEYENNEEINN 335
Query: 1500 GRTATPDTSFTTKLTNLFNRSSSNDT------EAENTFKRAISAMVQQSPHLLEKNKELN 1553
+ ++ N N +N+ E N I+ + + E N E+N
Sbjct: 336 EINNEINNEINNEINNEINNEINNEINDEINKEINNGINNGINNGINNEINN-EINNEIN 394
Query: 1554 TPSGGELSFEE 1564
E++ E
Sbjct: 395 NGINNEINNSE 405
Score = 58 (25.5 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 18/90 (20%), Positives = 39/90 (43%)
Query: 1508 SFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHL-LEKNKELNTPSGGELSFEEKH 1566
SF + N + + N + ++V++ ++ E N+E+N E++ E +
Sbjct: 288 SFNEPQNDNINYNEEGENIQLNEKSKTNESLVKEENNVEYENNEEINNEINNEINNEINN 347
Query: 1567 SMAAKSKNETTPTIKTEMRKIISSSDYQGL 1596
+ + NE I E+ K I++ G+
Sbjct: 348 EINNEINNEINNEINDEINKEINNGINNGI 377
Score = 49 (22.3 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 28/111 (25%), Positives = 44/111 (39%)
Query: 1368 IFSNATYSIPTTQNSELFSTGGMSFFGYP---NLLDIPENKNKLLTGEITANKMETKPEK 1424
+ +N +I TQN+ F+ + F P N+ E +N L + N+ K E
Sbjct: 266 LHNNMLENIERTQNT--FNNDEYNSFNEPQNDNINYNEEGENIQLNEKSKTNESLVKEEN 323
Query: 1425 ATCPQDKEVEEITNGTQTITMNDLYQSANKRSENGFNIPSISDLIKQ--NN 1473
+ + EEI N N++ N N N I+D I + NN
Sbjct: 324 NV--EYENNEEINNEINNEINNEINNEINNEINNEIN-NEINDEINKEINN 371
Score = 48 (22.0 bits), Expect = 6.2e-30, Sum P(4) = 6.2e-30
Identities = 30/125 (24%), Positives = 48/125 (38%)
Query: 1435 EITNGTQTITMNDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNS 1494
EI N N++ NK NG N I++ I N I + + + + NS
Sbjct: 348 EINNEINNEINNEINDEINKEINNGIN-NGINNGIN-NEINNEINNEINNGINN-EINNS 404
Query: 1495 PSDN---GGRTAT--PDT-SFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEK 1548
N GG P +T + + +SND E + +K S Q + ++ +
Sbjct: 405 EGMNNILGGYKIPFLPKVHKYTKEYYMKYESLNSNDFEILDIYKLRNSIKTQIATYINKL 464
Query: 1549 NKELN 1553
KE N
Sbjct: 465 KKEKN 469
Score = 44 (20.5 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 1547 EKNKELNTPSGGELSFEEKHSMAAKSKNETTPTIKTEMRKIISSSDYQGL 1596
E N E+N E++ E + + + NE I E+ I++ G+
Sbjct: 332 EINNEINNEINNEINNEINNEINNEINNEINDEINKEINNGINNGINNGI 381
Score = 40 (19.1 bits), Expect = 1.7e-39, Sum P(4) = 1.7e-39
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 1380 QNSELFSTGGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVE 1434
+ S+ F G + + +L+ + K+K L + N K+ P++ +++
Sbjct: 629 EKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDEVKSFFPENVKID 683
Score = 40 (19.1 bits), Expect = 6.2e-30, Sum P(4) = 6.2e-30
Identities = 8/48 (16%), Positives = 28/48 (58%)
Query: 734 PTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQVADQI 781
P ++ + + EN +++ ++ NES++ ++ V+ + +++ ++I
Sbjct: 292 PQNDNINYNEEGEN--IQLNEKSKTNESLVKEENNVEYENNEEINNEI 337
Score = 38 (18.4 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 1330 NQVNTSSAPKEKPRTSEQNQIKSNGNEQKVII 1361
N +N K K + + +++ NG E+++ +
Sbjct: 703 NMINKIITEKSKTISKLKYKLRYNGKEKQIYL 734
>UNIPROTKB|Q8IIU0 [details] [associations]
symbol:PF11_0074 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159 PROSITE:PS50817
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 EMBL:AE014186
GO:GO:0016539 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 302 (111.4 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 56/144 (38%), Positives = 86/144 (59%)
Query: 502 SEF-GQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYA 560
SEF + K Y+Y + + +++ + YI + WNLHYY+ GC SW W YP+HYA
Sbjct: 560 SEFTDEQKYKKYYYLHKFGLEDPKEIQNIVKKYIEGLFWNLHYYHFGCASWYWEYPYHYA 619
Query: 561 PYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYP 620
P SD+ F + +E G+P+ F L++VLP K LLP+ Y+N+ +E+ + ++P
Sbjct: 620 PLCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIY-VEDE-VKSFFP 677
Query: 621 EEFATDLNGKKQDWEAVVLIPFID 644
E D NGKK+ WE +V +PFI+
Sbjct: 678 ENVKIDPNGKKETWEYIVHLPFIN 701
Score = 238 (88.8 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 43/105 (40%), Positives = 71/105 (67%)
Query: 2 GVPKFFRYISERYPCL-SEVVREYQIPEFDNLYLDMNGIIHNCSHPNDND-PHFRITEKQ 59
G+P+ +++++ YP + E++ + D Y+DMNG+IH+C+H N P + E +
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNEKQKSVDIFYIDMNGVIHHCTHANKEKLPIY--DEHE 103
Query: 60 IFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRS 104
+F +I Y++ LF +I+PKKL ++ +DGV+P+AKMNQQR RRF S
Sbjct: 104 LFSNILQYLKNLFYLIKPKKLIYIGVDGVSPKAKMNQQRKRRFLS 148
Score = 196 (74.1 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 49/118 (41%), Positives = 66/118 (55%)
Query: 185 TEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETP 244
T F+ NCIT GT FM +++ L + K+ + K++ + VI SG +
Sbjct: 158 TSNLFNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVF----------EFDVIFSGSDVA 206
Query: 245 GEGEHKIMDYIRYMKSKPDYN-PNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFN 301
GEGEHKI+ YIR K D N N HC+YGLDADLIML L TH +LR++ K +
Sbjct: 207 GEGEHKILKYIRE-NCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRDKFKIS 263
Score = 141 (54.7 bits), Expect = 1.7e-39, Sum P(4) = 1.7e-39
Identities = 37/152 (24%), Positives = 79/152 (51%)
Query: 319 FFLLHLSLMRDYLELEFG----KLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPD 374
F +L + +R+ ++ + KLK+ + FSI ++DD V + FL+GNDF+P++P+
Sbjct: 441 FEILDIYKLRNSIKTQIATYINKLKKEK--NIVFSISRVVDDIVFLSFLVGNDFLPHIPN 498
Query: 375 LHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQ 434
+ I G++ + Y + YI ++++R + L L++ +FE F+++ +
Sbjct: 499 IDINEGSMNEILNSYIFYIYKYSNYITYKDKVHIERLKIILKILSAQEFEYFKKRGINEN 558
Query: 435 YLEGKMGKKFSDVFHKEKSKEMDP-DLAALIK 465
E +K+ ++ K DP ++ ++K
Sbjct: 559 ISEFTDEQKYKKYYYLHKFGLEDPKEIQNIVK 590
Score = 135 (52.6 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PKKL ++ +DGV+P+AKMNQQR RRF S K + T F+ NCIT G
Sbjct: 121 PKKLIYIGVDGVSPKAKMNQQRKRRFLSIF-------KINDNDN---TSNLFNPNCITTG 170
Query: 198 TPFMCRLHQQLRYFVKL 214
T FM +++ L + K+
Sbjct: 171 TDFMYKINLSLNKWFKI 187
Score = 62 (26.9 bits), Expect = 5.5e-32, Sum P(3) = 5.5e-32
Identities = 28/131 (21%), Positives = 47/131 (35%)
Query: 1440 TQTITMNDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNG 1499
TQ ND Y S N+ + N + I+ N +KT+ V+Y N+ N
Sbjct: 277 TQNTFNNDEYNSFNEPQNDNINYNEEGENIQLNE-KSKTNESLVKEENNVEYENNEEINN 335
Query: 1500 GRTATPDTSFTTKLTNLFNRSSSNDT------EAENTFKRAISAMVQQSPHLLEKNKELN 1553
+ ++ N N +N+ E N I+ + + E N E+N
Sbjct: 336 EINNEINNEINNEINNEINNEINNEINDEINKEINNGINNGINNGINNEINN-EINNEIN 394
Query: 1554 TPSGGELSFEE 1564
E++ E
Sbjct: 395 NGINNEINNSE 405
Score = 58 (25.5 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 18/90 (20%), Positives = 39/90 (43%)
Query: 1508 SFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHL-LEKNKELNTPSGGELSFEEKH 1566
SF + N + + N + ++V++ ++ E N+E+N E++ E +
Sbjct: 288 SFNEPQNDNINYNEEGENIQLNEKSKTNESLVKEENNVEYENNEEINNEINNEINNEINN 347
Query: 1567 SMAAKSKNETTPTIKTEMRKIISSSDYQGL 1596
+ + NE I E+ K I++ G+
Sbjct: 348 EINNEINNEINNEINDEINKEINNGINNGI 377
Score = 49 (22.3 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 28/111 (25%), Positives = 44/111 (39%)
Query: 1368 IFSNATYSIPTTQNSELFSTGGMSFFGYP---NLLDIPENKNKLLTGEITANKMETKPEK 1424
+ +N +I TQN+ F+ + F P N+ E +N L + N+ K E
Sbjct: 266 LHNNMLENIERTQNT--FNNDEYNSFNEPQNDNINYNEEGENIQLNEKSKTNESLVKEEN 323
Query: 1425 ATCPQDKEVEEITNGTQTITMNDLYQSANKRSENGFNIPSISDLIKQ--NN 1473
+ + EEI N N++ N N N I+D I + NN
Sbjct: 324 NV--EYENNEEINNEINNEINNEINNEINNEINNEIN-NEINDEINKEINN 371
Score = 48 (22.0 bits), Expect = 6.2e-30, Sum P(4) = 6.2e-30
Identities = 30/125 (24%), Positives = 48/125 (38%)
Query: 1435 EITNGTQTITMNDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNS 1494
EI N N++ NK NG N I++ I N I + + + + NS
Sbjct: 348 EINNEINNEINNEINDEINKEINNGIN-NGINNGIN-NEINNEINNEINNGINN-EINNS 404
Query: 1495 PSDN---GGRTAT--PDT-SFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEK 1548
N GG P +T + + +SND E + +K S Q + ++ +
Sbjct: 405 EGMNNILGGYKIPFLPKVHKYTKEYYMKYESLNSNDFEILDIYKLRNSIKTQIATYINKL 464
Query: 1549 NKELN 1553
KE N
Sbjct: 465 KKEKN 469
Score = 44 (20.5 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 1547 EKNKELNTPSGGELSFEEKHSMAAKSKNETTPTIKTEMRKIISSSDYQGL 1596
E N E+N E++ E + + + NE I E+ I++ G+
Sbjct: 332 EINNEINNEINNEINNEINNEINNEINNEINDEINKEINNGINNGINNGI 381
Score = 40 (19.1 bits), Expect = 1.7e-39, Sum P(4) = 1.7e-39
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 1380 QNSELFSTGGMSFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVE 1434
+ S+ F G + + +L+ + K+K L + N K+ P++ +++
Sbjct: 629 EKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDEVKSFFPENVKID 683
Score = 40 (19.1 bits), Expect = 6.2e-30, Sum P(4) = 6.2e-30
Identities = 8/48 (16%), Positives = 28/48 (58%)
Query: 734 PTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQVADQI 781
P ++ + + EN +++ ++ NES++ ++ V+ + +++ ++I
Sbjct: 292 PQNDNINYNEEGEN--IQLNEKSKTNESLVKEENNVEYENNEEINNEI 337
Score = 38 (18.4 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 1330 NQVNTSSAPKEKPRTSEQNQIKSNGNEQKVII 1361
N +N K K + + +++ NG E+++ +
Sbjct: 703 NMINKIITEKSKTISKLKYKLRYNGKEKQIYL 734
>UNIPROTKB|C9JCZ8 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] InterPro:IPR004859
Pfam:PF03159 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00979282 ProteinModelPortal:C9JCZ8 SMR:C9JCZ8
STRING:C9JCZ8 Ensembl:ENST00000477237 ArrayExpress:C9JCZ8
Bgee:C9JCZ8 Uniprot:C9JCZ8
Length = 165
Score = 562 (202.9 bits), Expect = 6.2e-53, P = 6.2e-53
Identities = 108/177 (61%), Positives = 134/177 (75%)
Query: 201 MCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKS 260
M RLH+ L+YFV +KI+TDK W+ V + SGHETPGEGEHKIM++IR K+
Sbjct: 1 MARLHEHLKYFVNMKISTDKSWQG---------VTIYFSGHETPGEGEHKIMEFIRSEKA 51
Query: 261 KPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFF 320
KPD++PN RHCLYGLDADLIMLGL +HE +FSLLREEV+F K + ++ PEET F
Sbjct: 52 KPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQ---RVCAPEETTFH 108
Query: 321 LLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
LLHLSLMR+Y++ EF LKE ++F + IE IIDDW+LMGFL+GNDFIP+LP LHI
Sbjct: 109 LLHLSLMREYIDYEFSVLKEK--ITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 163
>DICTYBASE|DDB_G0289921 [details] [associations]
symbol:DDB_G0289921 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004859
InterPro:IPR012677 Pfam:PF00076 Pfam:PF03159 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0289921 Pfam:PF06201 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000149
GO:GO:0004527 InterPro:IPR008979 SUPFAM:SSF49785
Gene3D:2.60.120.470 InterPro:IPR010400 PROSITE:PS51532
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 KO:K12619
RefSeq:XP_635977.1 ProteinModelPortal:Q54GU2
EnsemblProtists:DDB0188640 GeneID:8627392 KEGG:ddi:DDB_G0289921
InParanoid:Q54GU2 OMA:MDADLIF Uniprot:Q54GU2
Length = 1235
Score = 256 (95.2 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 66/170 (38%), Positives = 98/170 (57%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA-EVLEQKAKEKGERLPTEKR-------F 189
P L ++ +DGV PRAK +QR RRF+S+KE +V+ ++ K K + + + F
Sbjct: 106 PSSLLYIGVDGVPPRAKAIEQRKRRFKSSKETVDVIIKQLKSKSKPITRDSIIEQFSLIF 165
Query: 190 DSNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEH 249
DSN I+P T F+ ++ ++ + K LSL +++ +ILS PGEGEH
Sbjct: 166 DSNSISPATEFIEKVDDWIKDYCK-----------QLSL-KRQNLSIILSDSTVPGEGEH 213
Query: 250 KIMDYIRYMKSKPDYNPN-MRHCLYGLDADLIMLGLCTHEPYFSLLREEV 298
KIMDYIR ++ P + M HC YG+DADLI LGL +H F +LR+ +
Sbjct: 214 KIMDYIR--QNHPILKKDGMSHCFYGMDADLIFLGLESHLSNFYILRDPI 261
Score = 256 (95.2 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 67/219 (30%), Positives = 105/219 (47%)
Query: 503 EFGQHKTDYYHYKLDY-AKVTNEVLR---DQAECYIRAIQWNLHYYYNGCVSWSWYYPHH 558
EF YY K D K ++V + D Y + W L YY +GC +W WYYP+H
Sbjct: 763 EFKYDDLLYYRVKFDLIGKPDDQVKKLVDDMCYQYTLGLHWVLRYYVSGCQAWDWYYPYH 822
Query: 559 YAP-------Y---ISDIKDFSHLN--LKYEMGEPFLPFQQLLAVLPAASKELLPEPYQN 606
YAP Y +S I+D +N +++ P P L +VLP S LP+ ++
Sbjct: 823 YAPLAKDLLNYQKRLSKIQDREMVNNQFNFKLSSPLPPLIHLASVLPRNSVAFLPDSMKH 882
Query: 607 LMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIK-AMDAVEHLLTDEERS 665
++ ENSP Y +++ D NG+ W+A+VL+ F+D K + + V + LTD E+
Sbjct: 883 IVN-ENSPFTASYRDDYKYDFNGENVAWKAIVLLDFMDIEKFKEYLLPIVNNELTDNEKK 941
Query: 666 RNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPL 704
RN G + + + + L + N N+ EK +
Sbjct: 942 RNLIGNDIKFKNGEIIQLSPLCNNTTTNNNNNNYEEKEI 980
Score = 124 (48.7 bits), Expect = 6.1e-37, Sum P(5) = 6.1e-37
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 55 ITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA-EVLEQ 113
++++++ + IF+ ++ + + P L ++ +DGV PRAK +QR RRF+S+KE +V+ +
Sbjct: 84 LSDEKLKERIFYRLDQMVNNVNPSSLLYIGVDGVPPRAKAIEQRKRRFKSSKETVDVIIK 143
Query: 114 KAKEKGERLPTEKRFDFITLKF 135
+ K K + + + + +L F
Sbjct: 144 QLKSKSKPITRDSIIEQFSLIF 165
Score = 123 (48.4 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 48/181 (26%), Positives = 83/181 (45%)
Query: 301 NTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLM 360
N +N GS ++ F +++ R YLE F + E + +I+D+ ++
Sbjct: 598 NDNNNSNGSGSGKKKKILFDYVNIDSFRTYLEYYFFEKIEKSKRE-KINFNRVINDFTVL 656
Query: 361 GFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPT-LDG-----YI-NEGG-YLNLKRFE 412
F +GNDF+P+LP + I +G++ L+ Y+E + L+G YI NE +LN +
Sbjct: 657 CFYLGNDFLPHLPSVGIQSGSIELIMCWYREWIQNCLNGDDDIKYIVNEQSTHLNFENCL 716
Query: 413 KFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYD 472
L LA ++ + E LE ++ K F V S E + ++ + YD
Sbjct: 717 PLLESLADWESSLYPEN------LEKQVKKDFIKVNKNSTSNESS---SIVMVPPEFKYD 767
Query: 473 D 473
D
Sbjct: 768 D 768
Score = 109 (43.4 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHN 42
MG+P F+R++ E +P + E +I +F+NLY+DMNG++HN
Sbjct: 1 MGIPSFYRWLIENFPKVLENNLNGEI-KFNNLYIDMNGVVHN 41
Score = 56 (24.8 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 1332 VNTSSAPKEKPRTSEQNQIKSNGNEQKVIINKEERCIFSNATYSIPTTQNSELFSTG 1388
+N++ + K P T E+ Q K E+K II K+ + A + T ++ +F G
Sbjct: 511 INSNGSSKTPPLTEEEKQAKEKVKEKKRII-KDSKIQQVLAKFDPNTPKDVAIFYLG 566
Score = 49 (22.3 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 19/75 (25%), Positives = 29/75 (38%)
Query: 1509 FTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPSGGELSFEEKHSM 1568
F K T++ R N +EN K+ S +EK+ N + FE + +
Sbjct: 290 FQKKSTSVIVRGIPNQC-SENDIKQLFSYYGNIKIEKIEKSNTKNKTLNAYIEFENEDIV 348
Query: 1569 AAKSKNETTPTIKTE 1583
S +T TI E
Sbjct: 349 NEVSTRGSTFTINNE 363
Score = 46 (21.3 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 1035 YTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDVFPHQGEQRVAQIV 1084
+ E+V IK+Y KQ LK + I L D P +GE ++ +
Sbjct: 176 FIEKVDDWIKDYCKQLS-----LKRQNLS-IILSDSTVPGEGEHKIMDYI 219
Score = 44 (20.5 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 998 TEEGAKRHNIGLNIKFSRKNEEVV 1021
T+ KR+ IG +IKF KN E++
Sbjct: 936 TDNEKKRNLIGNDIKF--KNGEII 957
Score = 44 (20.5 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1342 PRTSEQNQIKSNGNEQKVIINKEER 1366
P+T I SNG+ + + +EE+
Sbjct: 503 PKTESNTTINSNGSSKTPPLTEEEK 527
Score = 43 (20.2 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 253 DYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREE---VKFNTKSNKGGS 309
D I+Y+ ++ + N +CL L++ E ++++ V N+ SN+ S
Sbjct: 697 DDIKYIVNEQSTHLNFENCLPLLESLADWESSLYPENLEKQVKKDFIKVNKNSTSNESSS 756
Query: 310 QIVTPEETKF 319
++ P E K+
Sbjct: 757 IVMVPPEFKY 766
Score = 42 (19.8 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 983 LLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNEEVV 1021
L L R SI + DST G H I + + R+N ++
Sbjct: 191 LSLKRQNLSIILSDSTVPGEGEHKI---MDYIRQNHPIL 226
Score = 37 (18.1 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 1229 LCGNSNPHVKNINVMQSRGE-----RNTNYAQVTRQPQRTTFYKENAPLVNSN 1276
LC N+ + N N + +N + ++ P R F + + P+++SN
Sbjct: 962 LCNNTTTNNNNNNYEEKEIPCINITKNLSIKDLS-YPTRNYFTRSSHPVIDSN 1013
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 253 DYIRYMKSKPDYNPNMRHCLYGLD 276
D++++ KSK +N ++ L +D
Sbjct: 1039 DFLQWRKSKTGFNQSLE-ILQSID 1061
>UNIPROTKB|F8WDA0 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00792899 ProteinModelPortal:F8WDA0 SMR:F8WDA0
Ensembl:ENST00000486211 ArrayExpress:F8WDA0 Bgee:F8WDA0
Uniprot:F8WDA0
Length = 107
Score = 482 (174.7 bits), Expect = 2.1e-44, P = 2.1e-44
Identities = 84/103 (81%), Positives = 99/103 (96%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MGVPKF+R+ISERYPCLSEVV+E+QIPEFDNLYLDMNGIIH CSHPND+D HFRI++ +I
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFR 103
F DIFHY+E+LFR+I+P+K+FFMA+DGVAPRAKMNQQRGRRFR
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFR 103
Score = 133 (51.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 24/27 (88%), Positives = 27/27 (100%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFR 164
P+K+FFMA+DGVAPRAKMNQQRGRRFR
Sbjct: 77 PRKVFFMAVDGVAPRAKMNQQRGRRFR 103
>DICTYBASE|DDB_G0272997 [details] [associations]
symbol:DDB_G0272997 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0272997 GO:GO:0003676 GO:GO:0005622
EMBL:AAFI02000008 GO:GO:0004527 eggNOG:COG5049 RefSeq:XP_644931.1
EnsemblProtists:DDB0217078 GeneID:8618610 KEGG:ddi:DDB_G0272997
InParanoid:Q558Y5 OMA:NSKFNNS Uniprot:Q558Y5
Length = 1114
Score = 127 (49.8 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 31/104 (29%), Positives = 55/104 (52%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDNLYLDMNGIIHNCSHPNDNDPHFRITEKQI 60
MG+ ++ +++ C+ E V+E D++Y+D+N +H DN TE +
Sbjct: 1 MGIEGLNLFMGKQFGCV-EKVKEITT---DHVYIDLNNYLHKSVKRGDNSK--LNTEVNV 54
Query: 61 FQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRS 104
F+ + +I+ + R ++ K F IDG PR+KM QR RR ++
Sbjct: 55 FRILKSFIDGILRKVRVKHSVFFGIDGPGPRSKMILQRERRLKN 98
Score = 54 (24.1 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 54/245 (22%), Positives = 103/245 (42%)
Query: 187 KRFDSNC----ITPGTPFMCRLHQQLRYFVKLKIT-TDKLW---KDTLSLWVWKDVCVIL 238
K FDS+ TPGT FM +L L ++ K K+ K++ D + +K IL
Sbjct: 140 KSFDSSFSTLEFTPGTTFMGKLKDFLIFYTKNKLYFAKKIFISASDRIGEGEFKIFEQIL 199
Query: 239 SGHETPGEGEHKIM----DYIRY-MKSKPDYNPNMRHCLYGLDAD-LIMLGLCTHEPYFS 292
+ + P I+ D + + + SK Y N+ +Y D++ +I + + Y
Sbjct: 200 NSNY-PINDSFTIVSSDSDILLFSLLSK--YK-NVY--IYNKDSEEIIKIDKIRDKIYQQ 253
Query: 293 LLREEVKFNTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIEN 352
+++ K + K G ++ E + + +++E + +E
Sbjct: 254 CYKKKQKKQKQQKKSGGEVEGEGEG----IATEEKEEGVQIEEEEEEEEEEEEDISKRRQ 309
Query: 353 IIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFE 412
I D+V++ FL+G D +P + +I G+ + Y ++ L Y E G +NL
Sbjct: 310 AIVDFVMLTFLMGTDHLPKVSSYNI--GSA---WSEYCKIKKPL--YNEETGLINLDLLF 362
Query: 413 KFLTK 417
+ + K
Sbjct: 363 RLIGK 367
Score = 51 (23.0 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 1614 QQQQTVEP----EQN-KQAFPP----HPDQLAQPGD 1640
QQQQ +P EQ KQA PP HP Q QP +
Sbjct: 1027 QQQQQKQPKLPREQRAKQAKPPQQPQHPKQPKQPNE 1062
Score = 51 (23.0 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 20/134 (14%), Positives = 50/134 (37%)
Query: 1446 NDLYQSANKRSENGFNIPSISDLIKQNNITAKTDYPTTSTFPEVKYTNSPSDNGGRTATP 1505
N+ + ++ + ++ +I + + NN+ + Y ++ N+ ++N
Sbjct: 849 NNHFFNSELKLQSSDDIKDCLNNLYNNNLYNNSSYNNKNSIFNYNNNNNNNNNNNNNNNN 908
Query: 1506 DTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPSGGELSFEEK 1565
+ + N N+ N + N FK + QQ + + +EL + K
Sbjct: 909 NNNNNNNNNNNNNKHYQNKSNRFNNFKPELEMKAQQVQY--QTTQELEDQDQALIQQHLK 966
Query: 1566 HSMAAKSKNETTPT 1579
+ + ++T T
Sbjct: 967 QYQQQQQQQKSTQT 980
Score = 48 (22.0 bits), Expect = 0.00048, Sum P(6) = 0.00048
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 931 VISTVKEENSFIKLSFKVQQEPDLSD-LVHLQDDTVYN 967
+I+T + N F K+Q D+ D L +L ++ +YN
Sbjct: 843 LINTFRN-NHFFNSELKLQSSDDIKDCLNNLYNNNLYN 879
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(5) = 0.00016
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 533 YIRAIQWNLHYYYNGCVSWSWYYP 556
Y+ + W+++Y+ C +++ +P
Sbjct: 642 YLYGLIWHINYFGGKCNDFNFSFP 665
Score = 38 (18.4 bits), Expect = 0.00048, Sum P(6) = 0.00048
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 1330 NQVNTSSAPKEKPRTSEQNQIKSNGNEQKVIINKEERCIFSN 1371
N N ++ + N +N N K NK R F+N
Sbjct: 894 NNNNNNNNNNNNNNNNNNNNNNNNNNNNKHYQNKSNR--FNN 933
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1891 1760 0.00092 125 3 11 22 0.41 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 629 (67 KB)
Total size of DFA: 715 KB (2308 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 168.33u 0.12s 168.45t Elapsed: 00:00:41
Total cpu time: 168.36u 0.12s 168.48t Elapsed: 00:00:41
Start: Thu Aug 15 11:13:00 2013 End: Thu Aug 15 11:13:41 2013