RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14280
(1891 letters)
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3',
R interference; 3.20A {Drosophila melanogaster}
Length = 1140
Score = 812 bits (2097), Expect = 0.0
Identities = 440/1107 (39%), Positives = 630/1107 (56%), Gaps = 65/1107 (5%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
P++LFF+++DGVAPRAKMNQQR RRFR+A+EAE E KA ++GE L +RFDSNCITPG
Sbjct: 77 PQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE-LREHERFDSNCITPG 135
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM RL + LR F+K KI+TD LW+ VILSG E PGEGEHKIMDYIRY
Sbjct: 136 TEFMVRLQEGLRAFLKTKISTDPLWQR---------CTVILSGQEAPGEGEHKIMDYIRY 186
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
MK++PDY+PN RHCLYGLDA LI+LGLCTHE +F +LREEVKF + + EET
Sbjct: 187 MKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKR-----TSVEET 241
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
+FFLLHL L+R+YLELEF L+ I +IDDWVLMGFL+GNDFIP+LP LHI
Sbjct: 242 RFFLLHLGLLREYLELEFDALRTD---EHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
+ ALPLLY+ Y + PTL G INE G LNL+R + F++ L + + F+E D++Y+
Sbjct: 299 SSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMN 358
Query: 438 GKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWR 497
K DV +S+ +D DL ALI + ++ +
Sbjct: 359 NKSEAFDMDVGEITESQNLDSDLGALIN--------------KSMLLYDDDSEEDCSDEN 404
Query: 498 TNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPH 557
EF +K ++Y K +E++ + Y+ A+QW L YYY G SW WYYP
Sbjct: 405 AVLLKEFQNYKRNFYRNKFKR-DPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPF 463
Query: 558 HYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILE 617
HY P+ISD+K+ + + + MG PFLPFQQLLAVLPAAS +LLP Y +LM L SP+ E
Sbjct: 464 HYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAE 523
Query: 618 YYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTY 677
+YP EF +DLNGKK DWEAVVLIPFIDE +L+ AM E L+ EER RNRHGPM VY Y
Sbjct: 524 FYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHGPMYVYKY 583
Query: 678 SNVNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLKLYVTHFPTLK 737
S V G A A+ + E + +I V+ + ++ FPT++
Sbjct: 584 STVAQGPMPAYPPLRALPVLYCTEVAKWSHEIAVNLPYSVCIELPNAARTVFFPGFPTMQ 643
Query: 738 HVQFTHKIENAKVKVFQQPSRNESIII-VQDKVQVPSLKQVADQILGKTIFINYPHLIEI 796
H+ F ++ N +VKVF+Q SRN++I++ + + +L VA Q LGK I + +PHL++
Sbjct: 644 HLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHLVKA 703
Query: 797 RVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVY 856
V VAT+D R+ + + + F K++ + + ++G+ N +VLVY
Sbjct: 704 IVVRVATRDQRVDSEGITL--------NDSRRFDSECKALQEHFINRMGIQFANYDVLVY 755
Query: 857 GQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESL-EYKTIDEIFYPGC 915
+ F +G + + ++ S Y Q V +L + ++ F G
Sbjct: 756 VRTFAGNSTEFRDKGALMVRDSWSSSVTGYPAQGVVADLTVWERMRKNFLNVEHYFPVGS 815
Query: 916 QCFALSNPHYGSGGCVI-STVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYNYLPSYTV 974
F +++P+YGS G V + N I++S V+ EP ++ LQ++ +YL ++ V
Sbjct: 816 TIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVRPEPKVNAARQLQEERDRDYLSTFQV 875
Query: 975 ASKLSISPLLLSRFTGSIFIIDSTEE----GAKRHNIGLNIKFSRKNEEVVGFTRRDETT 1030
+ L IS L R +G+++++ +HNIGL +K+ R+NEE G+ R
Sbjct: 876 CNLLRISGRTLGRLSGTVWVVLGPRRQKMENVTKHNIGLQLKYPRQNEERAGYCFRTN-- 933
Query: 1031 KKWFYTEQVVTLIKNYMKQFPEVFGFL-KDHSSDDIYLRDDVFPHQ-GEQRVAQIVSWLK 1088
+W+Y+ V L++NY +++P+V F + + DVFP+ G +RV ++ +W++
Sbjct: 934 NQWYYSSLAVDLMRNYCQRYPDVIDFFGDSNDRAEFVFEQDVFPNAVGHRRVEELANWVR 993
Query: 1089 EQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTC-EKVEKQITLFVKPNKLYIPKPTLDKLC 1147
+QPH K E CG+ V + + L+ AVD K + L VKP+ L P TL +
Sbjct: 994 QQPHMKVERISCGSKTVCRETIELLIAAVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVY 1053
Query: 1148 PDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGI----------VQGETSYDAMYDVVFDK 1197
+LFDRVV +R Y VP+G +GT+IGI ++ + D V+FD
Sbjct: 1054 RSK-RPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDS 1112
Query: 1198 PFPHGVKIR-CSESRGYRMPAQAMINL 1223
P P+ I +E R Y++P A++ +
Sbjct: 1113 PVPNCNNIHGIAEDRVYKVPEIALVII 1139
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 576 bits (1486), Expect = e-180
Identities = 297/909 (32%), Positives = 454/909 (49%), Gaps = 94/909 (10%)
Query: 138 PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPG 197
PK+ F+MAIDGVAPRAKMNQQR RRFR+A +AE QKA E G+ LP + FDSN ITPG
Sbjct: 77 PKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPG 136
Query: 198 TPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRY 257
T FM +L + L+YF+ KIT D W++ V VI SGHE PGEG+HKIMDYIR
Sbjct: 137 TEFMAKLTENLKYFIHDKITNDTRWQN---------VKVIFSGHEVPGEGQHKIMDYIRA 187
Query: 258 MKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEET 317
++++ DYNPN RHC+YGLDADLI+LGL TH+ +F LLREEV F +S+ + T E
Sbjct: 188 IRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSS----VKTLETQ 243
Query: 318 KFFLLHLSLMRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHI 377
FFLLHLS++R+YL LEF ++ + + F + E ++DD++ + F IGNDF+PNLPDLH+
Sbjct: 244 NFFLLHLSILREYLALEFEEITDS--VQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHL 301
Query: 378 INGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLE 437
GA P+L + ++E L +DGYINE G +NL RF +L L+ F++ F +K D+++
Sbjct: 302 KKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFN 361
Query: 438 GKMGKK------------------------------FSDVFHKEKSKEMDPDLAALIKAT 467
++ ++ + E+ +
Sbjct: 362 QQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLE 421
Query: 468 DDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFF-------------------------- 501
D + + L ++ + +F
Sbjct: 422 DKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINXXXXXXXXXXXXXXXXXX 481
Query: 502 ----SEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPH 557
F + K YY KLD++ + L++ E Y+ +QW L+YYY GC SWSWYY +
Sbjct: 482 XIYSERFVEWKDQYYKDKLDFSINDTDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRY 541
Query: 558 HYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILE 617
HYAP ISD+ N+++ G+PF PFQQL+AVLP SK L+P Y+ LM E+SPIL+
Sbjct: 542 HYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILD 601
Query: 618 YYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTY 677
+YP E DLNGK DWEAVV I F+D+ +L++AM + L+ +E+ RN G L++ +
Sbjct: 602 FYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIF 661
Query: 678 SNVNLGT--ALAPDYFPAINENHAVEKPLYRDDIYVHPNKLRKGLCQDVNLK-LYVTHFP 734
+ F I NH +E+ + K GL + L + FP
Sbjct: 662 NPQVDTVYKTPLAGLFNDIEHNHCIERE--FIPESMENVKFLFGLPKGAKLGASSLAGFP 719
Query: 735 TLKHVQFTHKIENAKVKVFQQPSRNESIII---VQDKVQVPSLKQVADQILGKTIFINYP 791
+LK + T ++ VF PS+ +S+++ K SL +A + +GK ++ +P
Sbjct: 720 SLKTLPLTAELAYNSSVVFNFPSKQQSMVLHIQDLYKENGISLSDLAKRHMGKIVYSRWP 779
Query: 792 HLIEIRVQAVATKDSRISFDKNSGP---VFERAAKDMQDAFQLSKKSITDGYYTKLGVDI 848
L E ++ ++ T+++ K+ + + + F+ K ++ Y + +
Sbjct: 780 FLRESKLLSLITEETVYEGVKSGKLTKVIERKPQDFERKEFRELKMTLKSNYQRTKAILL 839
Query: 849 GNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAVLNLQQARESLEYK--- 905
+ L PV + ++F + Y Q V +++ E K
Sbjct: 840 DDISALAKVVPVNGLVRN----SDGSYSKSFNETIEYYPLQLIVEDVKNKDERYIEKEPL 895
Query: 906 TIDEIFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLS-FKVQQEPDLSDLVHLQDDT 964
I++ F G + L + YG V E + + ++ EP++ + D
Sbjct: 896 PINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSLRAEPNIGKVRAKLDSQ 955
Query: 965 VYNYLPSYT 973
+ P+
Sbjct: 956 ALRFYPTQV 964
Score = 130 bits (328), Expect = 2e-30
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 1073 PHQGEQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVD----TCEKVEKQIT 1128
+ + + + WL E V + + ++ +E + + E++
Sbjct: 985 SAEADSILKTVADWLSEARK-PFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKL 1043
Query: 1129 LFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYD 1188
V + + + L +F L DRV+ I+D VPL +GT++G +
Sbjct: 1044 AKVPREAILNAESSYVLL---RSQRFHLGDRVMYIQDSGKVPLHSKGTVVGY--TSIGKN 1098
Query: 1189 AMYDVVFDKPFPHGVKI--RCSESRGYRMPAQAMINLSYGERL 1229
V+FD G R RG + + ++NLS + +
Sbjct: 1099 VSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSSFLLNLSDRQLV 1141
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 308 bits (789), Expect = 4e-88
Identities = 169/576 (29%), Positives = 260/576 (45%), Gaps = 105/576 (18%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPE--------------------FDNLYLDMNGII 40
MGVP FR +S ++ + V E + DNLYLDMNGI+
Sbjct: 4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 63
Query: 41 HNCSHPNDNDPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGR 100
H CSHP D TE ++ +F Y + + M++P++L F+AIDGVAPRAKMNQQR R
Sbjct: 64 HPCSHPEDRPAPE--TEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSR 121
Query: 101 RFRSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRG 160
RFRS++EA + E++ + E
Sbjct: 122 RFRSSREAALKEEELQAFIEEA-------------------------------------- 143
Query: 161 RRFRSAKEAEVLEQKAKEKGERLPTEKRFDSNCITPGTPFMCRLHQQLRYFVKLKITTDK 220
+Q+ E +K +DSNCITPGTPFM L + LRY++ K+ +D
Sbjct: 144 ------------KQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDP 191
Query: 221 LWKDTLSLWVWKDVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLI 280
W++ V ILS PGEGEHKIM++IR + KP+Y+PN H +YGLDADLI
Sbjct: 192 CWRN---------VRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLI 242
Query: 281 MLGLCTHEPYFSLLREEVKFN--------------TKSNKGGSQIVTPEETKFFLLHLSL 326
MLGL THEP+F +LRE+V F + + P + F L++S+
Sbjct: 243 MLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSI 302
Query: 327 MRDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLY 386
+R+YLE+E P FPF +E IDDWV F +GNDF+P+LP L I +GA+ L
Sbjct: 303 LREYLEVELYVPNLP----FPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLT 358
Query: 387 KVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSD 446
++++ LP + GY+ G +NL R E L+ + + + + F+ ++
Sbjct: 359 EIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRRR--- 415
Query: 447 VFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQ 506
+++ + + + + EV+ + + + + +
Sbjct: 416 ---QQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 472
Query: 507 HKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLH 542
E++ ++A + +
Sbjct: 473 VNLSEKTSNRSLGATNRELINNRAANRLGLSREAAA 508
Score = 222 bits (565), Expect = 1e-59
Identities = 110/459 (23%), Positives = 192/459 (41%), Gaps = 16/459 (3%)
Query: 328 RDYLELEFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYK 387
R E + S+E + V D P I A L
Sbjct: 415 RQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVN 474
Query: 388 VYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDV 447
+ ++ G N N L++ A+ + + ++ +
Sbjct: 475 LSEKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVP 534
Query: 448 FHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQH 507
+ + I+++ +V N + S E+ E +
Sbjct: 535 LEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGY 594
Query: 508 KTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYISDIK 567
+ YY K + E +R+ + Y+ + W L YYY GC SW+WYYP+HYAP+ +D K
Sbjct: 595 RERYYEQKFHISPDEPEKIREAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPFAADFK 654
Query: 568 DFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPILEYYPEEFATDL 627
D + +++K+E+ +PF P++QLL VLPAASK LPE Q LMT ENS I+++YPE F DL
Sbjct: 655 DLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPENFTIDL 714
Query: 628 NGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALA 687
NGKK +W+ V L+PFIDE +L+ A+ + LT+EE RN G L++ + + + L
Sbjct: 715 NGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPMFSELV 774
Query: 688 PDYFPAINENHAVEKP----------LYRDDIYVHPNKLRKGLCQDVNLKLYVTHFPTLK 737
+ + ++ + +D + ++ + DV + + ++
Sbjct: 775 KQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDSVIPNVSVQCPI--DVTSADALQKYGSID 832
Query: 738 HVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQ 776
Q + +V + ++S+++ K+ L
Sbjct: 833 DNQSI----SLVFEVPKSHFVHKSMLLRGVKMPNRVLTP 867
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.5 bits (182), Expect = 3e-13
Identities = 92/695 (13%), Positives = 182/695 (26%), Gaps = 235/695 (33%)
Query: 35 DMNGIIHNCSHPNDNDPHFRITEKQIFQDI-FHYIEILFRMIQPKKLFFMAIDGVAPRAK 93
+ + D F E + ++ + + I K+ ID + +K
Sbjct: 10 ETGEHQYQY---KDILSVF---EDAFVDNFDCKDVQDMPKSILSKE----EIDHII-MSK 58
Query: 94 MNQQRGRRFRSAKEAEVLEQKAKEKGERL---PTEKRFDFITLKF-------CFPKKLFF 143
R L K +E ++ + F+ +++
Sbjct: 59 DAVSGTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 144 MAID----GVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKG------------------- 180
D AK N R + + ++A L + K
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 181 ERLPTEKRFD--------SNCITPGTPFMCRLHQQLRYFVKLKITTDKLWKDTLSLWVWK 232
+ + D NC +P T L + ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPET----VLEMLQKLLYQID----------------P 211
Query: 233 DVCVILSGHETPGEGEHKIMDYIRYMKSKPDYNPNMRHCLYGLDADLIMLGLCTHEPYFS 292
+ H I +R + Y +CL L++L +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCL------LVLLNVQN------ 255
Query: 293 LLREEVK-FN-------TKSNKGGSQIVTPEETK-FFLLH----------LSLMRDYLEL 333
+ FN T K + ++ T L H SL+ YL+
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 334 EFGKLKEPGVLSFPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVL 393
L + + P + +II ++ L
Sbjct: 314 RPQDLPREVLTTNPRRL-SII-------------------------AES------IRDGL 341
Query: 394 PTLDGYINEGGYLNLKRF----EKFLTKLASFDFEQ-------FRE-------------- 428
T D + ++N + E L L ++ + F
Sbjct: 342 ATWDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 429 --KYADIQYLEGKMGKKFSDVFHKEKSKEM---DPDLAALIKATDDDYDDGTEEVLN-YA 482
+D+ + K+ K S V +++ KE P + +K ++ +++ Y
Sbjct: 398 DVIKSDVMVVVNKLHKY-SLV--EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 483 NYEEYYYSDEDEEWRTN-FFSEFGQH--KTDYYHYK-------LDY----AKVTNEVLRD 528
+ + D + F+S G H ++ LD+ K+ ++
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 529 QAECYIRAIQWNLHYYYNGCVSWSWYYPHH--YAPYISDIKDFSHLNLKYEMGEPFLPFQ 586
A I L +Y + + Y ++ I DF
Sbjct: 515 NASGSILNTLQQLKFYKP------YICDNDPKYERLVNAILDF----------------- 551
Query: 587 QLLAVLPAASKELLPEPYQNLMTL----ENSPILE 617
LP + L+ Y +L+ + E+ I E
Sbjct: 552 -----LPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 73.7 bits (180), Expect = 5e-13
Identities = 87/602 (14%), Positives = 185/602 (30%), Gaps = 156/602 (25%)
Query: 2 GVPKFFRYISER-YPCLSEVVR-EYQIPEFD-NLYLDMNGIIHNCSHPNDNDPHFRITEK 58
V KF + Y L ++ E + P +Y++ ++N + + ++
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYN-VSRL 134
Query: 59 QIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKE---AEVLEQKA 115
Q + + + L + +P K + IDGV G S K +V
Sbjct: 135 QPYLKL---RQALLEL-RPAK--NVLIDGVL---------G----SGKTWVALDVCLSY- 174
Query: 116 KEKGERLPTEKRFDF----ITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEV 171
+ + DF + LK C + + + + N R + ++
Sbjct: 175 -------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKL 225
Query: 172 LEQKAKEKGERLPTEKRF-----------DSNCITPGTPF--MCRLHQQLRYFVKLKITT 218
+ + RL K + ++ F C++ L T
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKI---------LLTTR 273
Query: 219 DKLWKDTLSLWVWKDVCVILSGHETPGEGEHKIMD-YIRYMKSKPDYNP------NMRHC 271
K D LS + + H + ++ ++Y+ +P P N R
Sbjct: 274 FKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 272 LYGLDADLIMLGLCTHEPYFSLLREEVKFNTKSNKGGSQIVTPEETKFFLLHLSLMRDYL 331
+ A+ I GL T + + + +++ T + ++ P E + LS+
Sbjct: 331 --SIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 332 ELEFGKLKEPGVLSF------PFSIENIIDDWVLMGFLIGNDF----------------I 369
+ +LS + +++ + +
Sbjct: 386 HIP------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 370 PNLPDLH--IING-ALPLLYKVYQEVLPTLDGYI-NEGGY--LNLKRFEKFLTKLASFDF 423
N LH I++ +P + + P LD Y + G+ N++ E+
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--------- 490
Query: 424 EQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYAN 483
FR + D ++LE K+ + A + +
Sbjct: 491 TLFRMVFLDFRFLEQKI-------------RHDSTAWNASGSILNT--------LQQLKF 529
Query: 484 YEEYYY-SDEDEEWRTNFFSEF-GQHKTDYYHYK-LDYAKVT----NEVLRDQAECYIRA 536
Y+ Y +D E N +F + + + K D ++ +E + ++A +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH---KQ 586
Query: 537 IQ 538
+Q
Sbjct: 587 VQ 588
Score = 68.3 bits (166), Expect = 2e-11
Identities = 101/767 (13%), Positives = 197/767 (25%), Gaps = 236/767 (30%)
Query: 557 HHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTLENSPIL 616
HH+ H ++ +E GE + IL
Sbjct: 1 HHH-----------HHHMDFETGE---------------------------HQYQYKDIL 22
Query: 617 EYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLL---TDEERSRNRHGPML 673
+ + F + + K D + D K I + + ++H++ + +L
Sbjct: 23 SVFEDAFVDNFDCK--DVQ--------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 674 VYTYSNVN--LGTALAPDYFPAINENHAVE--KPLYRDDIYVHPNKLRKGLCQDVNLKLY 729
V + L +Y + E +P +Y+ + R L D +
Sbjct: 73 SKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQV--- 125
Query: 730 VTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQVADQILGKTIFIN 789
F +V + + + R +++ + GKT
Sbjct: 126 ---FAKY-NVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGS-----------GKTWVA- 167
Query: 790 YPHLIEIRVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLSKKSITDGYYTKLGVDIG 849
++ K +F + +
Sbjct: 168 ----------LDVCLSYKVQ-CKMDFKIF----------------WLNLKNCNSPETVLE 200
Query: 850 NTEVLVY--GQPVESR-KYFFGPRGKVTQQRTFIRSTVTYA-YQSAVLNLQQARESLEYK 905
+ L+Y SR + + ++ + +R + Y++ +L L + + K
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---K 257
Query: 906 TIDEIFYPGCQCFALSNPHYGSGGCVISTVKEENSFIKLSFKVQQEPDLSDLVH-LQDDT 964
+ F C+ ++ T + + LS L L D
Sbjct: 258 AWNA-FNLSCK--------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 965 VYNYLPSY--TVASKL-----SISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKN 1017
V + L Y L + +P LS II + +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLS-------II-----AESIRDGLATWDNWKH- 349
Query: 1018 EEVVGFTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFGFLKDHSSDDIYLRDDV-FPHQG 1076
V + + + + VF P
Sbjct: 350 ---VNCDKLTTIIES-SLNVLEPAEYRKMFDRL-SVF-------------PPSAHIPTI- 390
Query: 1077 EQRVAQIVSWLKEQPHAKAEVRPCGAAVVDAKVVSLIEHAVDTCEK---VEKQITLFVKP 1133
+ ++ W S + V+ K VEKQ K
Sbjct: 391 ---LLSLI-WFDVIK-------------------SDVMVVVNKLHKYSLVEKQ----PKE 423
Query: 1134 NKLYIPKPTLDKLCPDPDTKFKLFDRVV---NIRDCY----TVPL---GYRGTIIG---- 1179
+ + IP L+ + ++ L +V NI + +P Y + IG
Sbjct: 424 STISIPSIYLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 1180 -IVQGETSYDAMYDVVFDKPFPHGVKIRCSESRGYRMPAQA-MINL-----SYGERLCGN 1232
I E V D F KIR A ++N Y +C N
Sbjct: 483 NIEHPE-RMTLFRMVFLDFRFL-EQKIRHD---STAWNASGSILNTLQQLKFYKPYICDN 537
Query: 1233 SNPH---VKNI-NVMQSRGE-----RNTNYAQVTRQPQRTTFYKENA 1270
+ V I + + E + T+ ++ + ++E
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 59.5 bits (143), Expect = 1e-08
Identities = 79/592 (13%), Positives = 167/592 (28%), Gaps = 170/592 (28%)
Query: 295 REEVKFNTKSNK--GGSQIVTPE----ETKFFLLHLSLMR----DYLELE----FGK--- 337
+ + ++ +Q+ + L +L+ + ++ GK
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 338 ----LKEPGVLS-FPFSIENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEV 392
V F I W+ + N P ++ LLY++
Sbjct: 167 ALDVCLSYKVQCKMDFKIF-----WLNLK----NCNSPET----VLEMLQKLLYQIDPNW 213
Query: 393 LPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYAD---IQYLEGKMGKKFSDVFH 449
D N L + + L +L + Y + + L +V +
Sbjct: 214 TSRSDHSSNI--KLRIHSIQAELRRL------LKSKPYENCLLV--LL--------NVQN 255
Query: 450 KEKSKEMDPDLAALIKATD----DDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFG 505
+ + L+ D T ++ ++ DE + ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYL 311
Query: 506 QHKTDYYHYKL-DYAKVTN--------EVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYP 556
+ L TN E +RD W+ +
Sbjct: 312 DCRPQ----DLPREVLTTNPRRLSIIAESIRD------GLATWD-------------NWK 348
Query: 557 HHYAPYISDIKDFSHLNLK-YEMGEPFLPFQQLLAVLPAASKELLPEPYQNLMTL-ENSP 614
H ++ I + S L+ E + F L+V P ++ +P L + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPPSAH--IPT--ILLSLIWFDVI 400
Query: 615 ILEYYPEEFATDLNGK---KQDW-EAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHG 670
+ L+ ++ E+ + IP I ++ L + E + +R
Sbjct: 401 --KSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-------LELKVKL--ENEYALHR-- 447
Query: 671 PMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLYRDDIYV------HPNKLRKGLCQDV 724
+V Y N+ D P Y D Y H + + +
Sbjct: 448 -SIVDHY---NIPKTFDSDDLI----------PPYLDQ-YFYSHIGHHLKNIEHP--ERM 490
Query: 725 NL--KLYVT-HF--PTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVPSLKQVAD 779
L +++ F ++H + + QQ + I D P +++ +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND----PKYERLVN 546
Query: 780 QILG-----KTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFERAAKDMQ 826
IL + I + ++ ++ I+ +FE A K +Q
Sbjct: 547 AILDFLPKIEENLICSKYT-DL-LR--------IALMAEDEAIFEEAHKQVQ 588
Score = 46.4 bits (109), Expect = 1e-04
Identities = 77/661 (11%), Positives = 160/661 (24%), Gaps = 234/661 (35%)
Query: 1233 SNPHVKNINVMQSRGERNTNYAQVTRQPQRTTFYKENAPLVNSNLQVTSPYHVKVSRCNS 1292
S + +I + + Q K V L++ + + +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFLMSPIKTEQ 102
Query: 1293 QQSSVSQSPSSTMISQQSSPFNVKPTEKTEPPPPHKLNQVNTSSAPKEKPRTSEQNQIKS 1352
+Q S+ + I Q+ +N + K N V + +P + +
Sbjct: 103 RQPSM---MTRMYIEQRDRLYN-------DNQVFAKYN-V-----SRLQPYLKLRQALLE 146
Query: 1353 NGNEQKVIINKEERCIFSNATYSIPTTQNSELFSTGGMSFFGYPNLLDIPENKNK-LLTG 1411
+ V+I+ G+ G K +
Sbjct: 147 LRPAKNVLID--------------------------GVLGSG------------KTWVAL 168
Query: 1412 EITANKMETKPEKATCPQDKEVEEITNGTQTIT------MNDLY----QSANKRSENGFN 1461
++ + K C D ++ + + L + RS++ N
Sbjct: 169 DVCLS------YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1462 IPSISDLIKQ--NNITAKTDYPTT-------------STFPEVKYTNSPSDNGGRT--AT 1504
I I+ + Y + F + + T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----------NLSCKILLTT 272
Query: 1505 PDTSFTTKLTNL--------FNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPS 1556
T L+ + + E ++ + + Q P +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---- 328
Query: 1557 GGELSFEEKHSMAAKSKNETTPTIKT-------EMRKIISSSDYQGLEEEEEEEVMIIEI 1609
+ S+ A+S + T ++ II SS LE E ++
Sbjct: 329 --------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMF---- 375
Query: 1610 KEDLQQQQTVEPEQNKQAFPPH---PDQL------AQPGDDV---------TSLI--RPQ 1649
+ L +V FPP P L DV SL+ +P+
Sbjct: 376 -DRL----SV--------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1650 PGPVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSV-PYQQQQQYQYYYNQQQP--MY 1706
+ + + + A++ V Y + + Y
Sbjct: 423 ESTISIP----SIYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 1707 YPQQVAYPPPPYQQARHPQYSKPPHPILNASSQPVPPDTTEDLEERADSYL------AKL 1760
+ + + H L E + +L K+
Sbjct: 473 FYSHIGH-----------------H--LKNIEH------PERMTLFRMVFLDFRFLEQKI 507
Query: 1761 LRLTRAHNLGA--------------------PDYTFSMDASKLYV---ATVRICHPHSDI 1797
+ A N P Y ++A ++ IC ++D+
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 1798 V 1798
+
Sbjct: 568 L 568
Score = 46.0 bits (108), Expect = 1e-04
Identities = 70/515 (13%), Positives = 144/515 (27%), Gaps = 151/515 (29%)
Query: 1151 DTKFKLFDRVVNIRDCYTVPLGYRGTIIGIVQGETSYDAMYDVVFDKPFPHGVKIRCSES 1210
D D V+ DC V D ++ + H + + + S
Sbjct: 20 DILSVFEDAFVDNFDCKDVQ-----------------DMPKSILSKEEIDHIIMSKDAVS 62
Query: 1211 RGYRMPAQAMINLSYGERLCGN--SNPHVKNINVMQSRGERNTNYAQVTRQPQRTT--FY 1266
R+ LS E + N + S RQP T +
Sbjct: 63 GTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQPSMMTRMYI 113
Query: 1267 KENAPLVNSNLQVTSPYHVKVSRCNSQ-QSSVSQ-SPS-------------STMIS---- 1307
++ L N N QV + Y+V + + + ++ + P+ + +
Sbjct: 114 EQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 1308 ----QQSSPFNV---------KPTEKTEPPPPHKLNQVNTSSAPKEKPRTSEQNQIKSNG 1354
Q F + P E L ++ P R+ + IK
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 1355 NEQKVIINKEERCIFSNATYS------------------------IPTTQNSELFSTGGM 1390
+ I E R + + Y + TT+ ++
Sbjct: 228 HS----IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1391 SFFGYPNLLDIPENKNKLLTGEITANKMETKPEKATCPQDKEVEEITNGT-QTITM-NDL 1448
+ + +L + ++ +P+ P E+ + +++ +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--P-----REVLTTNPRRLSIIAES 336
Query: 1449 YQSANKRSEN--GFNIPSISDLIKQ--NNITA---KTDYPTTSTFPEVKYTNSPSDNGGR 1501
+ +N N ++ +I+ N + + + S FP
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------------- 383
Query: 1502 TATPDTSFTTK-LTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPSGGEL 1560
T L+ ++ +D ++ + + S L+EK + +T S +
Sbjct: 384 ----SAHIPTILLSLIWFDVIKSDVM------VVVNKLHKYS--LVEKQPKESTISIPSI 431
Query: 1561 SFEEKHSMAAKSKNETTPTIKTEM-RKIISSSDYQ 1594
E K K +NE + R I+ Y
Sbjct: 432 YLELK----VKLENE------YALHRSIVDH--YN 454
Score = 31.7 bits (71), Expect = 2.9
Identities = 47/355 (13%), Positives = 92/355 (25%), Gaps = 105/355 (29%)
Query: 1580 IKTEMRKIISSSDYQ---GLEEEEEEEVMIIEIKEDLQQQQTVEPEQNKQAFPPHPDQLA 1636
++ + I+S + ++ + + +Q++ V Q F
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMV------QKF-------- 82
Query: 1637 QPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQ 1696
V ++R N L + R PS+ + Y
Sbjct: 83 -----VEEVLRI---------NYKFLMSPIKTEQRQ------------PSMMTRM---YI 113
Query: 1697 YY----YNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPIL------------------ 1734
YN Q + V PY + R P +
Sbjct: 114 EQRDRLYNDNQV-FAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 1735 -NASSQPVPPDT----TEDLEERADSYLAKLLRLTRAHNLGAPDYTFSMDASK------- 1782
+ Q ++ L L +L + + P++T D S
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQID-PNWTSRSDHSSNIKLRIH 228
Query: 1783 -LYVATVRIC----HPHSDIVVRGKPCAKKAD--SVEICARRAFNELTQIYPTAPNTKSA 1835
+ R+ + + +V+ + + + AFN +I T K
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLL--------NVQNAKAW--NAFNLSCKILLTTRF-KQV 277
Query: 1836 SDVTRAETKTAVAAQPAPQNTEVDQTDKNTAAAAEKKEKKAPRIAAKFKTPLNLK 1890
+D A T T ++ D+ + + + PR P L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 2e-09
Identities = 105/674 (15%), Positives = 189/674 (28%), Gaps = 289/674 (42%)
Query: 918 FALSNPHYGSGGCVI----------STVKEENSFIKLSFKVQQEPDLSDLVHLQDDTVYN 967
LS +GS V+ S ++E+ F K P+ ++ D+
Sbjct: 9 LTLS---HGSLEHVLLVPTASFFIASQLQEQ--FNK------ILPEPTEGFAADDE---- 53
Query: 968 YLPSYTVASKLSISPL-LLSRFTGSIFIIDSTEEGAKRH-----NIGLNIKFSR---KNE 1018
P+ +P L+ +F G ++ E N+ L +F +
Sbjct: 54 --PT---------TPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLT-EFENCYLEGN 99
Query: 1019 EV----VGFTRRDETTKKWFYTEQVVTLIKNY-----MKQFPEVFGFLKDHSSD------ 1063
++ + ++TT + LIKNY M + P F K +S
Sbjct: 100 DIHALAAKLLQENDTT-----LVKTKELIKNYITARIMAKRP----FDKKSNSALFRAVG 150
Query: 1064 ----DIYLRDDVFPHQGEQRVAQIVSWLKE--------QPHAKAEVRPCGAAVVDAKVVS 1111
+ +F QG + +E V
Sbjct: 151 EGNAQLVA---IFGGQGN-----TDDYFEELRDLYQTYHVL----------------VGD 186
Query: 1112 LIEHAVDTCEKVEKQITLFVKPNKLYIPKPTLDKLCPDPDTKFKLFDRVVNIRD------ 1165
LI+ + +T L +L K+F + +NI +
Sbjct: 187 LIKFSAET-----------------------LSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 1166 ------------------------CYTV---PLGYR-GTIIGIVQGETSYDAMYDVV--- 1194
Y V LG+ G + ++G T + +V
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLVTAV 281
Query: 1195 ----------FDKPFPHGVKI------RCSESRGYRMPAQAMI--NLSYGERLCGNSNPH 1236
F + + RC E+ +++ +L E G +P
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE---GVPSP- 337
Query: 1237 VKNINVMQS-RGERNTNYAQVTRQPQRTTFYKENAPLVNSNLQVTSPYHVKVSRCNSQQS 1295
M S QV +T NS+L V++S N ++
Sbjct: 338 ------MLSISN---LTQEQVQDYVNKT----------NSHLPAGK--QVEISLVNGAKN 376
Query: 1296 SVSQSPSSTMISQQSSPFNVKPTEKTEPPPPHKLNQVNTSSAPKEKPRTSEQNQIKSNGN 1355
V +S PP L +N + + P +Q++I +
Sbjct: 377 LV--------VSG----------------PPQSLYGLNLTLRKAKAPSGLDQSRIP--FS 410
Query: 1356 EQKVIINKEERCIFSNATYSIPTTQ--NSELFSTGGMSFFGYPNLLDIPENKNKLLTGEI 1413
E+K+ + F +P +S L L+ + L+ ++
Sbjct: 411 ERKLKFSNR----F------LPVASPFHSHL-------------LVPASD----LINKDL 443
Query: 1414 TANKMETKPEKATCPQDKEVEEITNGTQTITMNDLYQSANKRSENGFNIPSISDLIKQNN 1473
N + + P V + +G+ DL R +G I D I
Sbjct: 444 VKNNVSFNAKDIQIP----VYDTFDGS------DL------RVLSGSISERIVDCI---- 483
Query: 1474 ITAKTDYPTTSTFP 1487
I + TT+ F
Sbjct: 484 IRLPVKWETTTQFK 497
Score = 57.4 bits (138), Expect = 5e-08
Identities = 76/492 (15%), Positives = 134/492 (27%), Gaps = 185/492 (37%)
Query: 120 ERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEK 179
K + I K + A R + ++ SA L + E
Sbjct: 112 NDTTLVKTKELI--------KNYITA------RIMAKRPFDKKSNSA-----LFRAVGEG 152
Query: 180 GERL--------PTEKRFD--------SNCITPGTPFMCRLHQQLRYFVKLKITTDKLWK 223
+L T+ F+ + + + + L ++ + +K++
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 224 DTLSLWVWKDVCVILSGHE-TPGEGEHKIMDYIRYMKSKP-------------------- 262
L++ W L TP + Y+ S P
Sbjct: 211 QGLNILEW------LENPSNTPDKD---------YLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 263 -DYNP-NMRHCLYGL---DADLIMLGLC----THEPYFSLLREEVK--FNTKSNKGG--S 309
+ P +R L G L+ + E +F +R+ + F G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-----GVRC 310
Query: 310 QIVTPEETKFFLLHLSLMRDYLELEFGKLKEPGVLSFP-FSIENIIDDWVLMGFLIG--N 366
P + L S++ D LE G P P SI N+ + V + N
Sbjct: 311 YEAYPNTS----LPPSILEDSLENNEG---VPS----PMLSISNLTQEQVQD--YVNKTN 357
Query: 367 DFIPNLPDLHI--INGALPLLYKVYQEVL--PTLDGYINEGGYLNLKRFEKFLTKL-ASF 421
+P + I +NGA L V+ P L L K A
Sbjct: 358 SHLPAGKQVEISLVNGAKNL-------VVSGPPQS----------LYGLNLTLRKAKAPS 400
Query: 422 DFEQFREKYADIQYLEGKMGKKFSDVF-------HKEKSKEMDPDLAALIKATDDDYDDG 474
+Q R ++ + KFS+ F H S + P A+D D
Sbjct: 401 GLDQSRIPFS-------ERKLKFSNRFLPVASPFH---SHLLVP-------ASDLINKD- 442
Query: 475 TEEVLNYANYEEYYYSDEDEEWRTN------FFSEFGQHKTDYYHYKLDYAKVTNEVLRD 528
+ + + + G D ++ +
Sbjct: 443 --------------LVKNNVSFNAKDIQIPVYDTFDGS----------DLRVLSGSISER 478
Query: 529 QAECYIR-AIQW 539
+C IR ++W
Sbjct: 479 IVDCIIRLPVKW 490
Score = 50.8 bits (121), Expect = 5e-06
Identities = 105/581 (18%), Positives = 162/581 (27%), Gaps = 240/581 (41%)
Query: 398 GYIN---EGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSK 454
GY++ E + +F++ L L +FE YLEG D+ H
Sbjct: 66 GYVSSLVEPS--KVGQFDQVL-NLCLTEFEN--------CYLEGN------DI-H----- 102
Query: 455 EMDPDLAALIKATDDDYDDGTEEVL-NYANYEEYYYSDED-------------EEWRTNF 500
LAA + +D T+E++ NY + E
Sbjct: 103 ----ALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 501 FSEF-GQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYNGCVSWSWYYPHHY 559
+ F GQ TD Y + E LRD Y Y
Sbjct: 157 VAIFGGQGNTDDY---FE------E-LRDL---------------YQ-----------TY 180
Query: 560 APYISDIKDFSHLNLK------------YEMGEPFLPFQQLL---AVLPAASKELLPEPY 604
+ D+ FS L + G L + L + P + Y
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LNILEWLENPSNTP-------DKDY 230
Query: 605 QNLMTLENSPI-------------------LEYYPEEFATDLNG---------------K 630
L + PI L + P E + L G +
Sbjct: 231 -----LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 631 KQDWEAVVLIPFIDEV-KLIKAM--------DAVEH------LLTDEERSRNRHG---PM 672
WE+ F V K I + +A + +L D N G PM
Sbjct: 286 TDSWES-----FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGVPSPM 338
Query: 673 LVYTYSNVNLGTALAPDYFPAINENHAVEKPLY------RDDIYV--HPNKLRKGLCQDV 724
L + NL DY N + K + ++ V P L GL
Sbjct: 339 LSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-GLNL-- 391
Query: 725 NLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESIIIVQDKVQVP--S--LKQVADQ 780
TL+ + ++ +++ F + R V P S L +D
Sbjct: 392 ----------TLRKAKAPSGLDQSRIP-FSE--RKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 781 ILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFE-RAAKDMQDAFQLSKKSITDG 839
I L++ V + KD +I PV++ D++ + I D
Sbjct: 439 INK--------DLVKNNV-SFNAKDIQI-------PVYDTFDGSDLRVLSGSISERIVD- 481
Query: 840 YYTKLGVD------IGNTEVLVYGQPVESRKYFFGPRGKVT 874
+L V T +L FGP G +
Sbjct: 482 CIIRLPVKWETTTQFKATHILD-----------FGP-GGAS 510
Score = 48.9 bits (116), Expect = 2e-05
Identities = 42/250 (16%), Positives = 73/250 (29%), Gaps = 84/250 (33%)
Query: 1439 GTQTITMN-DLYQS----------ANK--RSENGFNIPSISDLIKQNNITAKTDYPTTST 1485
G+Q M DLY++ A+ + GF SI D++ N P T
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF---SILDIVINN--------PVNLT 1673
Query: 1486 --FPEVK-------YT----NSPSDNGGRTATPDTSFTTKLTNL-FNRSSS--NDTEAEN 1529
F K Y+ + D +T T+ F + T +
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QF 1731
Query: 1530 TFKRAI----SAMVQQSPHLLEKNKELNTPS---G---GE----------LSFEE----- 1564
T + A+ A + L+ + + G GE +S E
Sbjct: 1732 T-QPALTLMEKAAFE----DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 1565 ----KHSMAAKSKNETTPTIKTEMRKIISSSDYQGLEEEEEEEVMIIEIKEDLQQQQTVE 1620
A ++E + M I +E + V + + + + VE
Sbjct: 1787 FYRGMTMQVAVPRDELGRS-NYGMIAINPGRVAASFSQEALQYV-VERVGK--RTGWLVE 1842
Query: 1621 P----EQNKQ 1626
+N+Q
Sbjct: 1843 IVNYNVENQQ 1852
Score = 47.0 bits (111), Expect = 7e-05
Identities = 93/545 (17%), Positives = 152/545 (27%), Gaps = 193/545 (35%)
Query: 1363 KEERCIFSNATYSIPT---------TQNSELFSTGGMSFFGYPNLLDIPENKN------K 1407
+E+ F+ PT T +EL F GY + L P
Sbjct: 34 QEQ---FN-KILPEPTEGFAADDEPTTPAELVG----KFLGYVSSLVEPSKVGQFDQVLN 85
Query: 1408 LLTGEITANKMETK---------PEKATCPQDKEVEEITNGTQTITMNDLYQSANKRSEN 1458
L E +E ++ K E I N Y +A ++
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN----------YITARIMAKR 135
Query: 1459 GFNIPSISDLIK---------------QNNITAKTDYPTTSTFPEVK--YTNSPSDNGGR 1501
F+ S S L + Q N DY F E++ Y G
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---DY-----FEELRDLYQTYHVLVG-- 185
Query: 1502 TATPDTSFTTKLTNLFNRSSSNDTEAENTFKRAISAMVQQSPHLLEKNKELNTPSGGEL- 1560
+ +AE F + ++ + LE N NTP L
Sbjct: 186 ------DLIKFSAETLSELIRTTLDAEKVFTQGLNIL-----EWLE-NPS-NTPDKDYLL 232
Query: 1561 ----SF------EEKHSMAAKSKNETTPTIKTEMRKIIS--SSDYQGL------------ 1596
S + H + TP E+R + + QGL
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 1597 EEEEEEEVMIIEIKEDL-------QQ---QQTVEPEQNKQAF-----PPHPDQLAQPGDD 1641
E I + L + ++ P + + P P L+
Sbjct: 290 ESFFVSVRKAITV---LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLS----- 340
Query: 1642 VTSLIRPQPGPVRGHTN-----SSDLSRS-TNAQPRGIPILGSQAAMYNPSVPYQQQQQY 1695
+++L + Q TN + S N + + + G ++Y ++ ++ +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKAK-- 397
Query: 1696 QYYYNQQQPMYYPQQVAYPPPPYQQARHPQYS--KP-----------P-H-PILNASSQP 1740
P Q+R P +S K P H +L P
Sbjct: 398 ------------------APSGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLL----VP 434
Query: 1741 VPPDTTEDLEERADSYLAKLLRLTRAHNLGAPDY-TFSMDASKLYVATVRICHPHSDIVV 1799
+DL + S+ A ++ P Y TF D S L V + I D ++
Sbjct: 435 ASDLINKDLVKNNVSF--------NAKDIQIPVYDTF--DGSDLRVLSGSISERIVDCII 484
Query: 1800 RGKPC 1804
R P
Sbjct: 485 R-LPV 488
Score = 45.4 bits (107), Expect = 2e-04
Identities = 95/610 (15%), Positives = 183/610 (30%), Gaps = 193/610 (31%)
Query: 570 SHLNLKYEMGEP---FLPFQQL----LAVLPAASKELLP--EPYQNLMTLENSPILEYYP 620
SH +L++ + P F QL +LP ++ EP +P E
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP--------TTPA-ELVG 62
Query: 621 E--EFATDL--NGKKQDWEAVVLIPFID-EVKLIKAMD---AVEHLLTDEERSRNRHGPM 672
+ + + L K ++ V+ + + E ++ D LL + + + + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 673 L-VYTYSNVNLGTALAPDY----FPAINENHAVEKPLY-------RDDIYVHPNKLRKGL 720
+ Y + + F A+ E +A L D Y +LR
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGNTDDYF--EELRD-- 175
Query: 721 CQDVNLKLYVTHFPTLKHVQFTHKIENAKVKVFQQPSRNESI------II--VQDKVQVP 772
LY T+ + ++ + E + I+ +++ P
Sbjct: 176 -------LYQTYHVLVG--DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 773 SLKQVADQILGKTIFINYPHLIEIRVQAVATKDSRISFDKNSGPVFERAAKDMQDAFQLS 832
+ +I I+ P LI + +Q + AK
Sbjct: 227 DKDYLL------SIPISCP-LIGV-IQLAH---------------YVVTAK--------- 254
Query: 833 KKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQRTFIRSTVTYAYQSAV 892
LG P E R Y +G + + + S
Sbjct: 255 ----------LLGFT-----------PGELRSYL---KGATGHSQGLVTAVAIAETDSWE 290
Query: 893 LNLQQARESLEYKTIDEIFYPGCQC---FALSNPHYGSGGCVISTVKEEN----SFIKLS 945
R+++ +F+ G +C + P+ ++ E N S + LS
Sbjct: 291 SFFVSVRKAITV-----LFFIGVRCYEAY----PNTSLPPSILEDSLENNEGVPSPM-LS 340
Query: 946 FKVQQEPDLSDLVHLQD--DTVYNYLPSYTVASKLSISPLLLSRFTGSIFIIDSTEEGAK 1003
+L+ +QD + ++LP+ ++ IS L+ ++ + G
Sbjct: 341 IS-----NLT-QEQVQDYVNKTNSHLPA---GKQVEIS-LVNGA---KNLVV--S--GPP 383
Query: 1004 RHNIGLNIKFSRKNEEVVG-------FTRRDETTKKWFYTEQVVTLIKNYMKQFPEVFG- 1055
+ GLN+ RK + G F+ R K F +F V
Sbjct: 384 QSLYGLNLTL-RKAKAPSGLDQSRIPFSER----KLKFSN------------RFLPVASP 426
Query: 1056 FLKDHSSDDIYLRDDVFPHQGEQRVAQIVSWLKEQ---P--HAK--AEVRPCGAAVVDAK 1108
F HS L + V VS+ + P +++R ++ +
Sbjct: 427 F---HSH---LLV-PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 1109 VVSLIEHAVD 1118
V +I V
Sbjct: 480 VDCIIRLPVK 489
Score = 39.6 bits (92), Expect = 0.012
Identities = 99/640 (15%), Positives = 173/640 (27%), Gaps = 231/640 (36%)
Query: 131 ITLKFCFPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKEKGERLPTE--KR 188
+ P FF+A +Q + +F + E E A + P E +
Sbjct: 16 LEHVLLVPTASFFIA----------SQLQ-EQF-NKILPEPTEGFAADDEPTTPAELVGK 63
Query: 189 F---DSNCITPGT--PFMCRLHQQLRYFVKLKITTDKLW-KDTLSLWVWKDVCVILSGHE 242
F S+ + P F L+ L F L D +L +L ++
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGNDIHAL-----AAKLLQEND 113
Query: 243 TPGEGEHKIM-DYI--RYMKSKPDYNPN----MRHCLYGLDADLIML----GLCTHEPYF 291
T +++ +YI R M +P + R G +A L+ + G + YF
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQG--NTDDYF 170
Query: 292 SLLREEVKFNTKSNKGGSQIVTPEETKFFLLHLSLMRDYLELEFGKLKE--PGVLSFPFS 349
LR+ + + L+ D ++ L E L
Sbjct: 171 EELRD----------------------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 350 IENIIDDWVLMGFLIGNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLK 409
++ ++ +L P+ L I + PL+ V Q L Y+
Sbjct: 209 FTQGLN---ILEWLENPSNTPDKDYLLSIPISCPLIG-VIQ-----LAHYVV-------- 251
Query: 410 RFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATD- 468
KL F + R YL+G G + A I TD
Sbjct: 252 -----TAKLLGFTPGELRS------YLKGATGHS-QGLV-----------TAVAIAETDS 288
Query: 469 -DDYDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQHKTDYY-HYKLDYAKVTNEV- 525
+ + + + FF G + Y + L + + + +
Sbjct: 289 WESFFVSVRKAITVL-----------------FFI--GVRCYEAYPNTSLPPSILEDSLE 329
Query: 526 ---------L------RDQAECYIRAIQWNL----HYY---YNGCVSWSWYYPHHY---- 559
L ++Q + Y+ +L NG +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--------AKNLVVSG 381
Query: 560 APYISDIKDFSHLNLKYE--MGEPFL-----PFQQLLAVLPAASKELLP--EPYQNLMTL 610
P + LNL L PF + S LP P+
Sbjct: 382 PP-----QSLYGLNLTLRKAKAPSGLDQSRIPFSERK---LKFSNRFLPVASPF------ 427
Query: 611 ENSPILEYYPEEFATDLNGKKQDWEAVVL-IPFIDEVKLIKAMDAVEHLLTDEERSRNRH 669
+S +L + DL + A + IP
Sbjct: 428 -HSHLLVPASDLINKDLVKNNVSFNAKDIQIP---------------------------- 458
Query: 670 GPMLVY-TYSNVNL---GTALAPDYFPAINENHAVEKPLY 705
VY T+ +L +++ I + P+
Sbjct: 459 ----VYDTFDGSDLRVLSGSISERIVDCI-----IRLPVK 489
Score = 39.3 bits (91), Expect = 0.018
Identities = 38/268 (14%), Positives = 78/268 (29%), Gaps = 104/268 (38%)
Query: 817 VFERAAKDMQDAFQLSKKSITDGYYTKLGVDIGNTEVLVYGQPVESRKYFFGPRGKVTQQ 876
V+ RA +D + S I D +V PV +F G +GK ++
Sbjct: 1645 VWNRADNHFKDTYGFS---ILD---------------IVINNPVNLTIHFGGEKGKRIRE 1686
Query: 877 R-----------------------TFIRSTVTYAYQSAVLNL---QQ----ARESLEYKT 906
++ T+ + +L+ Q E ++
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 907 I-DEIFYPGCQCFALSNPHYG-SGG-----CVISTVKEENSFIKLSFKVQQEPDLSDLVH 959
+ + P FA G S G ++ V +S + L ++V
Sbjct: 1747 LKSKGLIPADATFA------GHSLGEYAALASLADV--------MSIE-----SLVEVVF 1787
Query: 960 LQDDTVYNYLPSYTVA-SKLSISPLLLSRFTGSIFIIDSTEEGAKRHNIGLNIKFSRKNE 1018
+ T+ +P + S + + R + F ++ + +R ++
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRV-AASFSQEALQYVVER--------VGKRTG 1838
Query: 1019 EVVGFTRRDETTKKWFYTEQVVTLIKNY 1046
+V ++V NY
Sbjct: 1839 WLV----------------EIV----NY 1846
Score = 35.4 bits (81), Expect = 0.25
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 345 SFPFSIENIIDD-----WVLMGFLIGNDFIPNLPDL--HIINGALPLLYKVYQEVLPTLD 397
++ FSI +I+ + + G G N + I K+++E+
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 398 GYINEG--GYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEGKMGKKFSDVF--H 449
Y G L+ +F T+ A E A + L+ K F H
Sbjct: 1716 SYTFRSEKGLLSATQF----TQPALTLME-----KAAFEDLKSKGLIPADATFAGH 1762
Score = 30.8 bits (69), Expect = 6.6
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 23/95 (24%)
Query: 60 IFQDIF-----HYIEIL-FRMIQ-----PKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEA 108
QD++ H+ + F ++ P L G ++G+R R A
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGG---------EKGKRIRENYSA 1690
Query: 109 EVLEQKAKEKGERLPTEKRFDFITLKFCF--PKKL 141
+ E K + K + + + F K L
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 58.7 bits (141), Expect = 2e-08
Identities = 18/132 (13%), Positives = 31/132 (23%), Gaps = 2/132 (1%)
Query: 1623 QNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQAAM 1682
K+ +P Q Q + + P S P+G Q
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMS--YGQMGMPPQGAVPSMGQQQF 61
Query: 1683 YNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNASSQPVP 1742
P+ QQ Q + + + P Q Q P + P
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Query: 1743 PDTTEDLEERAD 1754
+ + +
Sbjct: 122 GQPSAAMGQNMR 133
Score = 48.3 bits (114), Expect = 2e-05
Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 12/136 (8%)
Query: 1614 QQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGI 1673
QQ P Q+ A Q+ P + + + + Q
Sbjct: 24 QQPAQFMPPQDPAAAGMSYGQMGMPP-------QGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 1674 PILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPI 1733
+ ++N + Q QQ P Y Q
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM- 135
Query: 1734 LNASSQPVPPDTTEDL 1749
+Q P D +L
Sbjct: 136 ----NQLYPIDLLTEL 147
Score = 44.4 bits (104), Expect = 4e-04
Identities = 27/146 (18%), Positives = 35/146 (23%), Gaps = 17/146 (11%)
Query: 1613 LQQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRG 1672
+ Q V +Q P +QL Q D T+ + N
Sbjct: 47 MPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH--------------NVPLVD 92
Query: 1673 IPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHP 1732
P QQQQQ QP Q P Q P
Sbjct: 93 PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ---NMRPMNQLYPIDLLTELPP 149
Query: 1733 ILNASSQPVPPDTTEDLEERADSYLA 1758
+ + P PP S L+
Sbjct: 150 PITDLTLPPPPLVIPPERMLVPSELS 175
Score = 42.1 bits (98), Expect = 0.002
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 5/134 (3%)
Query: 1614 QQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGI 1673
Q Q + P+ A + P V S+ + Q + ++T +
Sbjct: 25 QPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84
Query: 1674 PILGSQAAMYNPSVPYQQQQQYQY-YYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHP 1732
+ +P+ Q Q Q QQQ P + +P
Sbjct: 85 L---HNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN-QLYP 140
Query: 1733 ILNASSQPVPPDTT 1746
I + P P
Sbjct: 141 IDLLTELPPPITDL 154
Score = 33.6 bits (76), Expect = 0.85
Identities = 19/139 (13%), Positives = 32/139 (23%), Gaps = 8/139 (5%)
Query: 1614 QQQQTVEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGI 1673
Q+Q + P + P QP
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPL------VDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Query: 1674 PILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPP--PPYQQARHPQYSKPPH 1731
P G +A ++ Q + P + PP P ++ P
Sbjct: 119 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNAS 178
Query: 1732 PILNASSQPVPPDTTEDLE 1750
P S+ P + L+
Sbjct: 179 PDYIRSTLNAVPKNSSLLK 197
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A
{Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Length = 352
Score = 35.7 bits (82), Expect = 0.12
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 1 MGVPKFFRYISERYPCLSEVVREYQIPEFDN--LYLDMNGIIHNCSHPNDNDPHFRITEK 58
MG+ + E + ++ + +D +H +
Sbjct: 1 MGIQGL-------LQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTD 53
Query: 59 QIFQDIFHYIEILFRM-IQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAEVLEQKAKE 117
+ ++ +L I+P +F DG +K +R RR R + + ++
Sbjct: 54 RYVGFCMKFVNMLLSHGIKPILVF----DGCTLPSKKEVERSRRERR-QANLLKGKQLLR 108
Query: 118 KGER 121
+G+
Sbjct: 109 EGKV 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 32.4 bits (73), Expect = 0.99
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 1647 RPQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMY 1706
+ + + S + + + P GS A + + + + P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG- 207
Query: 1707 YPQQVAYPPPPYQQARHPQ 1725
P PPPP+ +
Sbjct: 208 -PAGPGGPPPPFPAGQTHH 225
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 1.2
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 26/97 (26%)
Query: 103 RSAKEAEVLEQKAKEKGERLPTEKRFDFITLKFCFPKKLFFMAIDGVAPRAK-MNQQRGR 161
R +E E + + +E+ +RL ++ D + + +++ +
Sbjct: 79 RLTQEPESIRKWREEQRKRL--QEL-------------------DAASKVMEQEWREKAK 117
Query: 162 RFRSAKEAEVLEQKAKEKGERLPTEKRF----DSNCI 194
+ EQ K K +K F D++ I
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 7.5
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 1581 KTEMRKIISSSDYQGLEEEEEEEVMIIEIKEDLQQ---QQTVEPEQNK-------QAFPP 1630
+ E RK + D + E+ + K+DL++ +Q+ + E+NK +AF
Sbjct: 91 REEQRKRLQELD---AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF-- 145
Query: 1631 HPDQLAQPGDDV 1642
QP D+
Sbjct: 146 ----YQQPDADI 153
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.4 bits (73), Expect = 1.8
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 1674 PILGSQAAMYNPSVPYQQQQQYQYY-----YNQQQPMYYPQQVAYPP-PPYQQARHPQYS 1727
P + Y+P+ P Y Y+ P Y P +Y P P P YS
Sbjct: 1596 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1655
Query: 1728 KPPHPILNASSQPVPP 1743
P P + +S P
Sbjct: 1656 -PTSPAYSPTSPSYSP 1670
Score = 32.4 bits (73), Expect = 2.2
Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
Query: 1650 PGPVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQ 1709
P S S ++ + P + Y+P+ P Y + P Y P
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPT 1622
Query: 1710 QVAY-PPPPYQQARHPQYSKPPHPILNASSQPVP 1742
+Y P P P YS S P
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656
Score = 31.2 bits (70), Expect = 5.1
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 14/103 (13%)
Query: 1658 NSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQYY-----YNQQQPMYYPQQVA 1712
S S ++ + P + Y+P+ P Y Y+ P Y P +
Sbjct: 1629 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1688
Query: 1713 YPPP--------PYQQARHPQYSKPPHPILNASSQPVPPDTTE 1747
Y P P P YS P P + + E
Sbjct: 1689 YSPTSPNYSPTSPSYSPTSPGYS-PGSPAYSPKQDEQKHNENE 1730
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation;
NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Length = 139
Score = 30.5 bits (69), Expect = 2.1
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 1697 YYYNQQQPMYYPQQVAYPPPPYQQARH----PQYSKPPHPILNASSQPVPPDTTEDLEER 1752
++++ P+ +A H Q S+ + + + T E E+
Sbjct: 5 HHHHHHSSGLVPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQ 64
Query: 1753 ADSYLAKLLR 1762
S ++
Sbjct: 65 LKSIREDIVS 74
>1u3m_A CHPRP, prion-like protein; prion protein, TSE, membrane protein; NMR
{Gallus gallus} SCOP: d.6.1.1
Length = 117
Score = 30.2 bits (67), Expect = 2.1
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 1681 AMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPP 1717
M + + + +Y+++ YP +V Y
Sbjct: 15 VMSGMNYHFDRPDEYRWWSENSA--RYPNRVYYRDYS 49
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 31.4 bits (70), Expect = 2.2
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 1621 PEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQA 1680
P P Q G +P H + + + G +
Sbjct: 65 PHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGY---MLGS 121
Query: 1681 AMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPP 1715
AM P + + + +YY + YP QV Y P
Sbjct: 122 AMSRPLIHFGSDYEDRYYR--ENMHRYPNQVYYRP 154
Score = 31.0 bits (69), Expect = 3.4
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 5/70 (7%)
Query: 1668 AQPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYY--PQQVAYPPPP---YQQAR 1722
G GS+ + Q + Q + P + P + Q
Sbjct: 7 KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 66
Query: 1723 HPQYSKPPHP 1732
+ +P
Sbjct: 67 GGGWGQPHGG 76
Score = 30.2 bits (67), Expect = 6.1
Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 7/103 (6%)
Query: 1648 PQPGPVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYY 1707
+ G N+ P G + Q + + Q +
Sbjct: 3 KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGW 62
Query: 1708 --PQQVAYPPPPY-----QQARHPQYSKPPHPILNASSQPVPP 1743
P + P Q H Q++KP P N
Sbjct: 63 GQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAA 105
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 30.6 bits (68), Expect = 2.5
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 1677 GSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNA 1736
G + + + QY+Y + PQQ P + + + P+ +
Sbjct: 1 GPLGSAAAATPAVRTVPQYKY----AAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 56
Query: 1737 SSQPVPPDT 1745
PP
Sbjct: 57 MLASAPPQE 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 2.5
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 682 LGTAL---APDYFPAINENHAVE 701
L +L A D PA+ +E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A
{Ovis aries} SCOP: d.6.1.1
Length = 121
Score = 30.1 bits (67), Expect = 2.5
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 1681 AMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPP 1717
AM P + + + +YY YP QV Y P
Sbjct: 23 AMSRPLIHFGNDYEDRYYRENMY--RYPNQVYYRPVD 57
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 31.2 bits (70), Expect = 2.8
Identities = 37/176 (21%), Positives = 53/176 (30%), Gaps = 20/176 (11%)
Query: 1583 EMRKIISSSDYQGLEEEEEEEVMIIEIKEDLQQQQTVE---PEQNKQAFPPHPDQLAQPG 1639
E RKI + Q EE+ +++ ++ + TVE P+ A P PG
Sbjct: 47 EFRKIKPKNSKQAEREEKRVLGLVL-LRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG 105
Query: 1640 DDV-------TSLIRPQP-----GPVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSV 1687
+ PQ GPVRG S P+G + + AA S+
Sbjct: 106 IGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS----QQVMTPQGRGTVAAAAAAATASI 161
Query: 1688 PYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNASSQPVPP 1743
Q PM P R P P + +PP
Sbjct: 162 AGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane
protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Length = 130
Score = 30.1 bits (67), Expect = 3.3
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 1652 PVRGHTNSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQV 1711
P + TN ++ A G +LG+ A+ S + + +YY + P +V
Sbjct: 10 PPKSKTNMKSVAIGAAAGAIGGYMLGN--AVGRMSYQFNNPMESRYYNDYYN--QMPNRV 65
Query: 1712 AYPPPPYQQ 1720
P ++
Sbjct: 66 YRPMYRGEE 74
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for
structural genomics of infectious diseases (csgid
national institute of allergy and infectious diseases;
HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A
4e8o_A
Length = 166
Score = 30.2 bits (68), Expect = 3.5
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 631 KQDWEAVVLIPFIDEVKLIKAMDAVEHLLTD-EERSRNRHGPMLVYTYSNVNLGTALAPD 689
+ + + +++ D+ L + + ++ L+ + + A
Sbjct: 29 EASLKDWL--ELRNKL----WSDSEASHLQEMHQLLAEKYALQLLAYSDHQAIAMLEASI 82
Query: 690 YFPAINENHAVEKPLYRDDIYVHPNKLRKGL 720
F +N + + IYV P R G+
Sbjct: 83 RFEYVNGTET-SPVGFLEGIYVLPAHRRSGV 112
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.0 bits (69), Expect = 3.7
Identities = 17/127 (13%), Positives = 25/127 (19%)
Query: 1619 VEPEQNKQAFPPHPDQLAQPGDDVTSLIRPQPGPVRGHTNSSDLSRSTNAQPRGIPILGS 1678
V E Q + A T ++ G S + A S
Sbjct: 217 VPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTS 276
Query: 1679 QAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNASS 1738
NP + P P +P +P
Sbjct: 277 SIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPG 336
Query: 1739 QPVPPDT 1745
+P P
Sbjct: 337 RPEPGSA 343
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase,
glycosidase, choline-binding protein; 1.61A
{Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Length = 468
Score = 31.2 bits (70), Expect = 3.8
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 484 YEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECY-------IRA 536
++ Y+ + N + + +Y K D E + + Y +
Sbjct: 143 WQGSYFLNGQGAMIQNEWLYDPAYSAYFY-LKSDGTYANQEWQKVGGKWYYFKKWGYMAR 201
Query: 537 IQWNLHYYY--NGCVSWSWYYPHHYAPY 562
+W +YY +G ++
Sbjct: 202 NEWQGNYYLTGSGAMATDEVIMDGARYI 229
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside
ribostamycin; HET: COA RIO; 2.00A {Salmonella
enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A*
2vbq_A*
Length = 165
Score = 30.1 bits (68), Expect = 4.6
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 630 KKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEERSRNRHGPMLVYTYSNVNLGTALAPD 689
K E + L HL EE + H + V +G A A
Sbjct: 27 NKTHLEHWR--GLRKQ--LWPGHPDDAHLADGEEILQADHLASFIAMADGVAIGFADASI 82
Query: 690 YFPAINENHAVEKPLYRDDIYVHPNKLRKGL 720
+ ++ + I+V P+ ++G+
Sbjct: 83 RHDYV-NGCDSSPVVFLEGIFVLPSFRQRGV 112
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 30.7 bits (69), Expect = 4.8
Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 1656 HTNSSDLSRSTNAQPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPP 1715
SSD + S +A + Q + Q P YP Q YPP
Sbjct: 356 AGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYA-------PPPQGYPPQ-GYPP 407
Query: 1716 PPYQQARHPQYSKPPHPILNASSQPVPPDT 1745
Y +P PP P A Q PP
Sbjct: 408 QGYPPQGYPPQGYPPPPQ-GAPPQGAPPAA 436
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo
sapiens}
Length = 207
Score = 30.1 bits (68), Expect = 5.4
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 20/96 (20%)
Query: 471 YDDGTEEV-LNYA-NYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRD 528
Y + + + + +E ++ D ++ EFG+ + L +
Sbjct: 28 YLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEA----------QGALAN 77
Query: 529 QAECYIRAIQWNLHYYYNGCVSWSWYYPHHYAPYIS 564
A NL ++ + P ++
Sbjct: 78 IAVDK-----ANLEIM---TKRSNYTPITNVPPEVT 105
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo
sapiens}
Length = 206
Score = 29.7 bits (66), Expect = 6.5
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 1275 SNLQVTSPYHVKVSRCNSQQSSVSQSPSSTMISQQSSPFNVKPTEKTEPPPPHKLNQVNT 1334
+ + S Y + + +S S S P V P +P PP + T
Sbjct: 74 QPIFLLSGYTMWIRINHSLGSL------------DSPPTCVLPDSVVKPLPPSSVKAEIT 121
Query: 1335 SSAP 1338
+
Sbjct: 122 INIG 125
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 30.5 bits (68), Expect = 6.7
Identities = 11/106 (10%), Positives = 23/106 (21%), Gaps = 13/106 (12%)
Query: 1232 NSNPHVKNINVMQSRGERNTNYAQVTRQPQRTTFYKENAPLVNSNLQVTSPYHVKVSRCN 1291
+ H N+ V + + +NL + VK+ N
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTEN---SHPQHTITNLSPYTNVSVKLILMN 443
Query: 1292 SQQSSVSQSPSSTMISQQSSPFNVKPTEKTEPPPPHKLNQVNTSSA 1337
+ +S + + + P P
Sbjct: 444 PEGR--KESQELIVQTDEDLP--------GAVPTESIQGSTFEEKI 479
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast
thylakoid lumen, plant protein; 2.50A {Arabidopsis
thaliana}
Length = 268
Score = 29.9 bits (67), Expect = 7.1
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 457 DPDLAALIKATDDDY---DDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEF 504
LA + D + A + + Y + +T++ +
Sbjct: 185 PRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDL 235
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 30.3 bits (67), Expect = 7.4
Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 6/131 (4%)
Query: 1232 NSNPHVKNINVMQSRGERNTNYAQVTRQPQRTTFYKENAPLVNSNLQVTSPYHVKVSRCN 1291
+ V + V S + + ++ ++TT +N+ ++ LQ Y V++
Sbjct: 297 EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVIL-EKLQPDCDYVVELQAIT 355
Query: 1292 SQ-QSSVSQSPSSTMISQQSSPFNVKPTEKTEPPPPHKLNQVNTSSAPKEKPRTSEQNQI 1350
Q+ + + S + + N + KT + R E
Sbjct: 356 YWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQ----TQLPFQRRRPTRPLEVGAP 411
Query: 1351 KSNGNEQKVII 1361
+ +V +
Sbjct: 412 FYQDGQLQVKV 422
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A
{Clostridium thermocellum}
Length = 811
Score = 30.5 bits (68), Expect = 7.7
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 604 YQNLMTLENSPILEYYPEEFATDLNGKKQDWEAVVLIPFIDEVKLIKAMDAVEHLLTDEE 663
+ + EE + Q + V+ +++ K +KA+D+V+ L
Sbjct: 562 FLRAYDDFGRKVGSKENEEGKIFIES--QGF-CVMAEIGLEDGKALKALDSVKKYLDTPY 618
Query: 664 RSRNRHGPMLVYTYSNVNLGTALAPDYFPAINENHAVEKPLYRDDIYVHPN 714
++ ++ + Y P EN I+ H N
Sbjct: 619 GLVLQNPA-----FTRYYIEYGEISTYPPGYKEN---------AGIFCHNN 655
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 30.0 bits (66), Expect = 9.5
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 1616 QQTVEPEQNKQAFPPHPDQLAQP-------GDDVTSLIRPQPGPVRGHTNSSDLSRSTNA 1668
VE + F P D L P D+ ++RP+ P +
Sbjct: 23 TGDVEDVLIPKRFRPAKDPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAAL----- 77
Query: 1669 QPRGIPILGSQAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPP 1716
PR ++ SVP Y YY +P + P
Sbjct: 78 -PRLRQMVEDGKLKDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFGAPD 124
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein,
barbed END regulation, carmil family conformational
change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A*
3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Length = 286
Score = 29.6 bits (66), Expect = 9.6
Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 483 NYEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLH 542
+ + ++WR S + D+Y + + I + Q+
Sbjct: 107 DPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPK 166
Query: 543 YYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKY 576
++NG W + P + + + + Y
Sbjct: 167 NFWNG--RWRSEWKFTITPPTAQVAAVLKIQVHY 198
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI
domain, protein/DNA complex; 1.90A {Archaeoglobus
fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Length = 427
Score = 29.7 bits (66), Expect = 9.6
Identities = 22/225 (9%), Positives = 56/225 (24%), Gaps = 32/225 (14%)
Query: 365 GNDFIPNLPDLHIINGALPLLYKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFE 424
++++ L I + K + G +K E + K + +
Sbjct: 219 SSEYLTYLKS--TIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELK 276
Query: 425 QFREKYADIQYLEGKMGKKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANY 484
+ D++Y + + + + P +K + Y
Sbjct: 277 KQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLL----------- 325
Query: 485 EEYYYSDEDEEWRTNFFSEFGQHKTDY----YHYKLDYAKVTNEVLRDQAECYIRAIQWN 540
+ + + ++ T+E + I +
Sbjct: 326 -----------TLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYL 374
Query: 541 LHYYYNGCVSWSW----YYPHHYAPYISDIKDFSHLNLKYEMGEP 581
+ G S + YP A I+++ + + E
Sbjct: 375 SKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRS 419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 28,808,202
Number of extensions: 1789542
Number of successful extensions: 4178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4066
Number of HSP's successfully gapped: 80
Length of query: 1891
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1783
Effective length of database: 3,686,325
Effective search space: 6572717475
Effective search space used: 6572717475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.0 bits)