RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14280
(1891 letters)
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 34.4 bits (79), Expect = 0.092
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 386 YKVYQEVLPTLDGYINEGGYLNLKRFEKFLTKLASFDFEQFREKYADIQYLEG----KMG 441
++ +V+ L YI+ N+K + K +Q + +Q +G +
Sbjct: 124 FQSVADVMSKLQDYISAKDDKNMK-IDGGKIKAL---IQQVIDHLPTMQLPKGADIARWR 179
Query: 442 KKFSDVFHKEKSKEMDPDLAALIKATDDDYDDGTEEVLNYANYEEYY--YSDEDEEWRTN 499
K+ D S + + LIK D DGT + A Y+ + +S + + + +
Sbjct: 180 KELGDAVSISDSGVVTINPDKLIKMRDSLPPDGTV--WDTARYQAWNTAFSGQKDNIQND 237
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 144
Score = 31.5 bits (71), Expect = 0.41
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 1679 QAAMYNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNASS 1738
AA P+V Q +Y + PQQ P + + + P+ +
Sbjct: 5 SAAAATPAVRTVPQYKYA------AGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASML 58
Query: 1739 QPVPPD 1744
PP
Sbjct: 59 ASAPPQ 64
>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 108
Score = 29.0 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 1676 LGSQAAMYNPSVPYQQQQQYQYYYNQQQPMY-YPQQVAYPPPP 1717
LGS AM P + + + +YY M+ YP QV Y P
Sbjct: 12 LGS--AMSRPIIHFGSDYEDRYYREN---MHRYPNQVYYRPMD 49
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
papillomavirus type 18 [TaxId: 333761]}
Length = 194
Score = 29.2 bits (66), Expect = 3.2
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 471 YDDGTEEVLNYANYEEYYYSDEDEEWRTNFFSEFGQHKT----DYY--HYKLDYAKVTNE 524
+D + + Y ++ YY + W KT + +Y +
Sbjct: 126 FDGNKDNCMTYVAWDSVYYMTDAGTW----------DKTATCVSHRGLYYVKEGYNTFYI 175
Query: 525 VLRDQAECYIRAIQWNLHY 543
+ + E Y W +H+
Sbjct: 176 EFKSECEKYGNTGTWEVHF 194
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 29.9 bits (67), Expect = 3.3
Identities = 8/62 (12%), Positives = 13/62 (20%)
Query: 1683 YNPSVPYQQQQQYQYYYNQQQPMYYPQQVAYPPPPYQQARHPQYSKPPHPILNASSQPVP 1742
N Y + Q Y + + Y P + A +
Sbjct: 359 KNAVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRAD 418
Query: 1743 PD 1744
D
Sbjct: 419 DD 420
>d1t9ia_ d.95.2.1 (A:) DNA endonuclease I-CreI {Chlamydomonas
reinhardtii [TaxId: 3055]}
Length = 153
Score = 28.6 bits (64), Expect = 4.1
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 50 DPHFRITEKQIFQDIFHYIEILFRMIQPKKLFFMAIDGVAPRAKMNQQRGRRFRSAKEAE 109
P ++ +KQ + IE L + F V A +N + R+ S
Sbjct: 91 QPFLKLKQKQ-ANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRA 149
Query: 110 VLE 112
VL+
Sbjct: 150 VLD 152
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 29.2 bits (65), Expect = 5.0
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 496 WRTNFF--SEFGQHKTDYYHYKLDYAKVTNEVLRDQAECYIRAIQWNLHYYYN------G 547
W T+ +GQ+ HY +DYA N + + + W+ + N
Sbjct: 147 WLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEA 206
Query: 548 CVSWSWYYPHHYAPYIS 564
+ +Y H+ +S
Sbjct: 207 NSNNYQWYMHNNRLTVS 223
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 28.6 bits (64), Expect = 5.5
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 1773 DYTFSMDASKLYVATVRIC--------HPHSDIVVRGKPCAKKADSVEICARRAFN 1820
T+S +K++ + C P VR K++ + RR +
Sbjct: 28 TCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPH 83
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus),
equ c 1 [TaxId: 9796]}
Length = 159
Score = 27.5 bits (60), Expect = 9.3
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 6/120 (5%)
Query: 484 YEEYYYSDEDEEWRTNFFSEFGQHKTDYYHYKL-DYAKVTNEVLRDQAECYIRAIQWNLH 542
Y + SD E E G + + D + + E
Sbjct: 16 YSIFLASDVKE-----KIEENGSMRVFVDVIRALDNSSLYAEYQTKVNGECTEFPMVFDK 70
Query: 543 YYYNGCVSWSWYYPHHYAPYISDIKDFSHLNLKYEMGEPFLPFQQLLAVLPAASKELLPE 602
+G S ++ + + + + L L + + A P S E+ E
Sbjct: 71 TEEDGVYSLNYDGYNVFRISEFENDEHIILYLVNFDKDRPFQLFEFYAREPDVSPEIKEE 130
>d1lmea_ d.167.1.1 (A:) Peptide deformylase {Thermotoga maritima
[TaxId: 2336]}
Length = 154
Score = 27.4 bits (60), Expect = 9.9
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 1730 PHPILNASSQPVPPDTTEDLEERADSYLAKLLRLTRAHNLGAPDYTFSMDASKLYVATVR 1789
P+L ++PV E+L++ + + + L AP S + V
Sbjct: 17 GDPVLRKRAKPVTKF-DENLKKTIERMIETMYHYDGV-GLAAPQVGISQRFFVMDVGNGP 74
Query: 1790 ICHPHSDI 1797
+ + +I
Sbjct: 75 VAVINPEI 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,093,993
Number of extensions: 351802
Number of successful extensions: 905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 17
Length of query: 1891
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1792
Effective length of database: 1,048,326
Effective search space: 1878600192
Effective search space used: 1878600192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.5 bits)