BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14281
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKT-LLEENPSKHPIIILK 118
+N++ S R + DVT+ EGQ +AH+ VL+ACS YF + ++ + ++ + + +
Sbjct: 21 TNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPE 80
Query: 119 DVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+V K +++F Y ++ +S+D + + + L + + E+
Sbjct: 81 EVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKT-LLEENPSKHPIIILK 118
+N++ S R + DVT+ EGQ +AH+ VL+ACS YF + ++ + + I + +
Sbjct: 14 TNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPE 73
Query: 119 DVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+V K +++F Y ++ +S++ + K + L + + E+
Sbjct: 74 EVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPI----I 115
+ ++ + R ++ F D L +G+ K +L+A SPY +T L NP K I
Sbjct: 32 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKI 91
Query: 116 ILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTA 151
L+ + + +IL+++++G++ +++D + ++ A
Sbjct: 92 ELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAA 127
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 58 FQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIIL 117
+ +++ S R F DVT+ E + +AHK +LSA S YF L ++ L
Sbjct: 16 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF---SVAGQVVEL 72
Query: 118 KDVPFKHLTDILEFMYAGE-VNVSQDQLPSFLKTADRLKIKGLAE 161
+ + +IL ++Y+ + V V D L +K+ L +K +AE
Sbjct: 73 SFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAE 117
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKH 112
+++ S+++ + LR+ + TDV + + +AHK VL ACS F ++ + ++
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 66
Query: 113 PIIILKD--VPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168
+I D + + +L+FMY +N+ + + + + TA L+++ + + + +K
Sbjct: 67 LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENP--S 110
+ + D S++++ R DV + EG+ H+ VL+ACS YFK L
Sbjct: 13 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 72
Query: 111 KHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKRE 170
+ + + V + LT +++F Y + VS + L A L+I ++ + R+
Sbjct: 73 QQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLDRQ 132
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 70 RNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDIL 129
R D T +G KAHK VL+ACS YFK L + ++ L L +L
Sbjct: 20 RQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD---VVHLDISNAAGLGQVL 76
Query: 130 EFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQS 165
EFMY ++++S + + L A L+++ + A +
Sbjct: 77 EFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHA 112
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 70 RNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDIL 129
R D T +G KAHK VL+ACS YFK L + ++ L L +L
Sbjct: 22 RQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD---VVHLDISNAAGLGQVL 78
Query: 130 EFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQS 165
EFMY ++++S + + L A L+++ + A +
Sbjct: 79 EFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHA 114
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYF-KTLLEENPSKHPIIILK 118
+N++ R + DVTL E + +AH+ VL+ACS YF + L+ + + + + +
Sbjct: 17 TNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPE 76
Query: 119 DVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+V + +L+F Y ++ +S++ + ++ A+ L++ L ++
Sbjct: 77 EVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 46 GEQQQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLL 105
G Q ++ +F ++++ R + DV++ +G KAH+ VL+A S YF+ L
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF 63
Query: 106 EENPSKHPIIIL-KDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 161
N S+ ++ L V + IL F Y G ++++ + TA L+I+ + E
Sbjct: 64 --NNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIME 118
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPI----I 115
+ ++ + R ++ F D L +G+ K +L+A SPY +T L NP K I
Sbjct: 16 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKI 75
Query: 116 ILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTA 151
L+ + +IL+++++G++ +++D + ++ A
Sbjct: 76 ELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENP--S 110
+ + D S++++ R DV + EG+ H+ VL+ACS YFK L
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 62
Query: 111 KHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLA 160
+ + + V + LT +++F Y + VS + L A L+I ++
Sbjct: 63 QQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVS 112
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPI----I 115
+ ++ + R ++ F D L +G+ K +L+A SPY +T L NP K I
Sbjct: 16 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKI 75
Query: 116 ILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTA 151
L+ + +IL+++++G++ +++D + ++ A
Sbjct: 76 ELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAA 111
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 58 FQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIIL 117
+ +++ S R F DVT+ E + +AHK +LSA S YF L ++ L
Sbjct: 14 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF---SVAGQVVEL 70
Query: 118 KDVPFKHLTDILEFMYAGE-VNVSQDQLPSFLKTADRLKIKGLA 160
+ + +IL ++Y+ + V V D L +K+ L +K +A
Sbjct: 71 SFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIA 114
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKH 112
+++ S+++ + LR+ + TDV + + +AHK VL ACS F ++ + +
Sbjct: 10 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCN 69
Query: 113 PIIILKD--VPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168
+I D + + +L+FMY +N+ + + + + TA L+++ + + + +K
Sbjct: 70 LSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 127
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 69 LRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEE--NPSKHPIIILKDVPFKHLT 126
L ++ FTD L GQ +AHK +L+A SP F + E SK + + DV +
Sbjct: 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFK 227
Query: 127 DILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169
+++ F+Y G+ P+ K AD L LA A + +++R
Sbjct: 228 EMMCFIYTGKA-------PNLDKMADDL----LAAADKYALER 259
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 59 QSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEE--NPSKHPIII 116
+ + L ++ FTD L GQ +AHK +L+A SP F + E SK +
Sbjct: 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 68
Query: 117 LKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169
+ DV + +++ F+Y G+ P+ K AD L LA A + +++R
Sbjct: 69 INDVEPEVFKEMMCFIYTGKA-------PNLDKMADDL----LAAADKYALER 110
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 70 RNDNSFTDVTL---ACEGQTCKAHKMVLSACSPYFKTLLEE--NPSKHPIIILKDVPFK- 123
R F D+TL G+ +AH+ VL+A + YF LL + S+ + ++ +
Sbjct: 45 RRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEP 104
Query: 124 -----HLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 161
+ ++E+MY G + VS + L+ ADR + L E
Sbjct: 105 GPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKE 147
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 70 RNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDIL 129
R + D TL G KAH VL+ CS +F++L + ++ L +L
Sbjct: 19 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGFAEIFGL--LL 76
Query: 130 EFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQS 165
+F Y G + ++ L A L++ E QS
Sbjct: 77 DFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQS 112
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 70 RNDNSFTDVTL---ACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKH-- 124
R F D+TL G+ +AH+ VL+A + YF LL S+ ++ +
Sbjct: 27 RRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEP 86
Query: 125 ------LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAE 161
+ ++E+ Y G + VS + L+ ADR + L E
Sbjct: 87 GPEPDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKE 129
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 70 RNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDIL 129
R + D TL G KAH VL+ CS +F+ + + ++ L +L
Sbjct: 20 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGL--LL 77
Query: 130 EFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQS 165
+F Y G + ++ L A L++ E QS
Sbjct: 78 DFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQS 113
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 88 KAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSF 147
KAH+ VL++ S YF + + + V +LEF+Y G +N+ +
Sbjct: 35 KAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEI 94
Query: 148 LKTADRLKIK 157
+ AD LK++
Sbjct: 95 HQAADYLKVE 104
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 59 QSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEE--NPSKHPIII 116
+ + L ++ FTD L GQ +AHK +L+A SP F E SK +
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVE 77
Query: 117 LKDVPFKHLTDILEFMYAG 135
+ DV + + F+Y G
Sbjct: 78 INDVEPEVFKEXXCFIYTG 96
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 33 LPELPEISKTKMNGEQQQYYLKWND------FQSNMVTSFKHLRNDN 73
+P+ PEI + + YLKWND +SN++ K LR ++
Sbjct: 84 IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKES 130
>pdb|6EBX|A Chain A, Structure Determination Of A Dimeric Form Of Erabutoxin
B, Crystallized From Thiocyanate Solution
pdb|6EBX|B Chain B, Structure Determination Of A Dimeric Form Of Erabutoxin
B, Crystallized From Thiocyanate Solution
pdb|3EBX|A Chain A, Refinement At 1.4 Angstroms Resolution Of A Model Of
Erabutoxin B. Treatment Of Ordered Solvent And Discrete
Disorder
pdb|1ERA|A Chain A, Tertiary Structure Of Erabutoxin B In Aqueous Solution
Elucidated By Two-Dimensional Nuclear Magnetic
Resonance
pdb|1FRA|A Chain A, Tertiary Structure Of Erabutoxin B In Aqueous Solution
Elucidated By Two-Dimensional Nuclear Magnetic
Resonance
Length = 62
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 37 PEISKTKMNGEQQQYYLKWNDFQSNMV 63
P+ +KT GE Y+ +W+DF+ ++
Sbjct: 11 PQTTKTCSPGESSCYHKQWSDFRGTII 37
>pdb|1NXB|A Chain A, Structure And Function Of Snake Venom Curarimimetic
Neurotoxins
Length = 62
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 37 PEISKTKMNGEQQQYYLKWNDFQSNMV 63
P+ +KT GE Y+ +W+DF+ ++
Sbjct: 11 PQTTKTCSPGESSCYHKQWSDFRGTII 37
>pdb|3RWL|A Chain A, Structure Of P450pyr Hydroxylase
Length = 426
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 66 FKHLRNDNSFTDVTLACEG----QTCKAHKMVLSACSPYFKTLLEENPSKHP 113
F+ R ++DVT A G ++ K L C+ YF+ L E +K P
Sbjct: 182 FEERRKLTRWSDVTTAAPGGGVVESWDQRKTELLECAAYFQVLWNERVNKDP 233
>pdb|3DOA|A Chain A, The Crystal Structure Of The Fibrinogen Binding Protein
From Staphylococcus Aureus
Length = 288
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 29 SQRKLPELPEISKTKMNGEQQQYYLKWNDFQSNMVT 64
++ KLP P K G++ Y++K N F + VT
Sbjct: 230 AETKLPPTPIFHKNHETGKEDFYFIKLNQFNDDTVT 265
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 10 RQILSYYKQFSDPLENFRDSQRKLPEL 36
R+I YYKQ +P+ KLP+L
Sbjct: 14 REIARYYKQVVEPVNRLEAEVEKLPDL 40
>pdb|2I0Q|B Chain B, Crystal Structure Of A Telomere Single-Strand Dna-Protein
Complex From O. Nova With Full-Length Alpha And Beta
Telomere Proteins
Length = 385
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 101 FKTLLEE--NPSKHPIIILKDVPFKHLTDILEFMYA---GEVN--VSQDQLPSFLKTADR 153
FK L+E NP+++P+ + +D FK T I F + +N V D L K AD
Sbjct: 121 FKPNLQERLNPTRYPVNLFRDDEFK--TTIQHFRHTALQAAINKTVKGDNLVDISKVADA 178
Query: 154 LKIKGLAEA 162
KG +A
Sbjct: 179 AGKKGKVDA 187
>pdb|3AT7|A Chain A, Crystal Structure Of Bacterial Cell-Surface
Alginate-Binding Protein Algp7
pdb|3AT7|B Chain B, Crystal Structure Of Bacterial Cell-Surface
Alginate-Binding Protein Algp7
Length = 283
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 1 VAEKSPEDVRQILSYYKQFSDPLENFRDSQRKLPELPEISKTKMNGEQQQY-YLKWNDFQ 59
VA+K DV ++ + + P E L E E++ TK++GE+ +Y + DFQ
Sbjct: 134 VADKLMADVLELQKRIRGLTFPPEKVVGGAAVLME--EVAATKISGEEDRYSHTDLWDFQ 191
Query: 60 SN------MVTSFKHL--RNDNSFTD 77
+N +V F+ L +++ +F D
Sbjct: 192 ANFEGAKKIVDLFRPLVVKDNRAFAD 217
>pdb|3VI3|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|C Chain C, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|C Chain C, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 632
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 84 GQTCKAHKMVLSACSPYFKTLLEENPSKHPI 114
G T +AH + AC+P + E+ P P+
Sbjct: 102 GATVRAHGSSILACAPLYSWRTEKEPLSDPV 132
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 31 RKLPELPEISKTKMNGEQQQYYLKWND 57
+KLP P+ + NGEQQ YLK D
Sbjct: 103 KKLPRNPQREEIIGNGEQQYVYLKDGD 129
>pdb|4DXY|A Chain A, Crystal Structures Of Cyp101d2 Y96a Mutant
Length = 417
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 20 SDPLENFRDSQRKLPELPEISKTKMNGEQQQY---YLKWNDF 58
SDPL+ R ++ P +S+ +M + Q+Y +LK D
Sbjct: 283 SDPLKLMRGAEEMFRRFPVVSEARMVAKDQEYKGVFLKRGDM 324
>pdb|3NV5|A Chain A, Crystal Structure Of Cytochrome P450 Cyp101d2
pdb|3NV6|A Chain A, Crystal Structure Of Camphor-Bound Cyp101d2
Length = 452
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 20 SDPLENFRDSQRKLPELPEISKTKMNGEQQQY---YLKWNDF 58
SDPL+ R ++ P +S+ +M + Q+Y +LK D
Sbjct: 318 SDPLKLMRGAEEMFRRFPVVSEARMVAKDQEYKGVFLKRGDM 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,083,278
Number of Sequences: 62578
Number of extensions: 199769
Number of successful extensions: 467
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 48
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)