Query psy14281
Match_columns 171
No_of_seqs 191 out of 1472
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 15:53:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohu_A Transcription regulator 100.0 1.2E-29 4.2E-34 177.2 11.0 118 49-166 6-124 (125)
2 1r29_A B-cell lymphoma 6 prote 100.0 1.8E-29 6.3E-34 176.7 11.3 119 52-170 6-126 (127)
3 2if5_A Zinc finger and BTB dom 100.0 1.4E-29 4.9E-34 175.6 10.3 115 53-167 3-119 (120)
4 3b84_A Zinc finger and BTB dom 100.0 7.7E-30 2.6E-34 177.0 8.8 116 53-170 2-117 (119)
5 2ihc_A Transcription regulator 100.0 2E-29 6.7E-34 176.1 10.1 119 49-167 3-122 (124)
6 3ga1_A Nucleus accumbens-assoc 100.0 2.5E-29 8.4E-34 176.7 10.4 122 47-170 5-127 (129)
7 2z8h_A Transcription regulator 100.0 5E-29 1.7E-33 177.1 11.7 121 49-169 10-131 (138)
8 2ppi_A Gigaxonin; BTB domain, 100.0 4.5E-29 1.5E-33 178.6 10.2 119 49-167 21-143 (144)
9 1buo_A POZ domain, protein (pr 100.0 7.4E-29 2.5E-33 172.4 9.6 116 51-169 4-119 (121)
10 2vpk_A Myoneurin; transcriptio 100.0 1.2E-28 4.1E-33 170.0 9.8 111 56-168 3-115 (116)
11 2yy9_A Zinc finger and BTB dom 100.0 1.5E-28 5.1E-33 174.1 10.0 113 55-169 5-117 (135)
12 2q81_A MIZ-1 protein; BTB/POZ 100.0 1.1E-28 3.7E-33 171.1 6.5 112 53-167 5-116 (119)
13 3fkc_A Transcriptional regulat 99.9 2.3E-27 7.8E-32 163.9 8.9 111 49-162 5-116 (116)
14 2vkp_A BTB/POZ domain-containi 99.9 1.7E-26 5.9E-31 157.3 8.2 100 69-169 2-107 (109)
15 3hve_A Gigaxonin; ubiquitin, c 99.9 2.8E-26 9.6E-31 178.0 9.7 118 51-168 7-128 (256)
16 3m5b_A Zinc finger and BTB dom 99.9 8.5E-26 2.9E-30 156.7 9.7 105 54-167 11-115 (119)
17 4eoz_A Speckle-type POZ protei 99.9 2.5E-26 8.4E-31 163.7 6.3 111 59-169 9-121 (145)
18 3i3n_A Kelch-like protein 11; 99.9 9E-26 3.1E-30 177.2 9.5 119 50-168 7-136 (279)
19 3htm_A Speckle-type POZ protei 99.9 7.7E-26 2.6E-30 165.4 7.8 113 57-169 16-130 (172)
20 3hqi_A Speckle-type POZ protei 99.9 2.3E-23 7.7E-28 165.8 8.8 111 59-169 158-270 (312)
21 2ast_A S-phase kinase-associat 99.5 6.4E-14 2.2E-18 101.3 6.4 89 78-167 3-122 (159)
22 4ajy_C Transcription elongatio 99.4 1.3E-12 4.6E-17 86.8 8.0 78 78-156 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.2 1.4E-11 4.8E-16 87.3 5.9 87 78-167 4-117 (141)
24 2p1m_A SKP1-like protein 1A; F 99.1 2.2E-11 7.4E-16 88.1 1.3 88 78-167 6-121 (160)
25 3drz_A BTB/POZ domain-containi 98.8 5.5E-08 1.9E-12 65.5 9.3 90 77-167 7-104 (107)
26 2fnj_C Transcription elongatio 98.8 1.9E-08 6.3E-13 66.5 6.8 78 78-156 3-96 (96)
27 1hv2_A Elongin C, ELC1; protei 98.8 1.7E-08 5.7E-13 67.1 6.4 78 78-156 6-99 (99)
28 3v7d_A Suppressor of kinetocho 98.6 8E-08 2.7E-12 69.8 6.6 88 77-165 8-127 (169)
29 1vcb_B Protein (elongin C); tu 98.3 8.9E-07 3.1E-11 60.0 5.7 79 77-156 18-112 (112)
30 3drx_A BTB/POZ domain-containi 98.1 1.1E-05 3.8E-10 59.8 7.6 89 78-167 14-110 (202)
31 1s1g_A Potassium voltage-gated 97.6 0.00044 1.5E-08 47.4 8.7 85 77-165 14-107 (124)
32 3kvt_A Potassium channel prote 97.6 0.00028 9.7E-09 47.8 7.3 82 78-160 7-93 (115)
33 2nz0_B Potassium voltage-gated 97.5 0.00056 1.9E-08 47.9 7.8 79 77-159 36-121 (140)
34 1t1d_A Protein (potassium chan 97.4 0.00044 1.5E-08 45.6 6.1 86 78-164 3-95 (100)
35 1nn7_A Potassium channel KV4.2 97.3 0.00043 1.5E-08 46.1 5.2 84 78-165 2-94 (105)
36 2r9r_B Paddle chimera voltage 94.3 0.12 4.2E-06 43.3 7.3 83 77-160 53-141 (514)
37 2eqx_A Kelch repeat and BTB do 81.2 1.1 3.8E-05 29.0 2.8 33 136-168 5-37 (105)
38 3htm_A Speckle-type POZ protei 59.8 5.3 0.00018 27.5 2.4 32 138-169 131-162 (172)
39 3hqi_A Speckle-type POZ protei 43.7 13 0.00044 28.4 2.4 31 138-168 271-301 (312)
40 3i3n_A Kelch-like protein 11; 32.5 25 0.00085 26.3 2.4 31 138-168 138-168 (279)
41 3hve_A Gigaxonin; ubiquitin, c 32.0 21 0.0007 26.4 1.8 30 138-167 130-159 (256)
42 4h63_H Mediator of RNA polymer 22.6 45 0.0015 24.2 2.1 14 123-136 186-199 (200)
No 1
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.96 E-value=1.2e-29 Score=177.18 Aligned_cols=118 Identities=24% Similarity=0.421 Sum_probs=111.1
Q ss_pred ceeEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCC-CCHHHHHH
Q psy14281 49 QQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKD-VPFKHLTD 127 (171)
Q Consensus 49 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~-v~~~~~~~ 127 (171)
....+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++......|.+++ +++++|+.
T Consensus 6 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~ 85 (125)
T 3ohu_A 6 PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGP 85 (125)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHH
T ss_pred cceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHH
Confidence 34458889999999999999999999999999999999999999999999999999999855578899998 99999999
Q ss_pred HHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhh
Q psy14281 128 ILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSS 166 (171)
Q Consensus 128 lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~ 166 (171)
+|+|+|||++.++.+++.+++.+|++|+++.|++.|+++
T Consensus 86 ~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 86 LLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp HHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred HHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999874
No 2
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.96 E-value=1.8e-29 Score=176.73 Aligned_cols=119 Identities=22% Similarity=0.431 Sum_probs=112.0
Q ss_pred EeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCC-CCCceEEe-CCCCHHHHHHHH
Q psy14281 52 YLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENP-SKHPIIIL-KDVPFKHLTDIL 129 (171)
Q Consensus 52 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~-~~~~~i~l-~~v~~~~~~~lL 129 (171)
.++++.|...+.+.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++. .....|.| +++++++|+.+|
T Consensus 6 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll 85 (127)
T 1r29_A 6 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILL 85 (127)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999882 26688999 899999999999
Q ss_pred HHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhccC
Q psy14281 130 EFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKRE 170 (171)
Q Consensus 130 ~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r~ 170 (171)
+|+|||++.++.+++.+++.+|++|+++.|++.|+.++.+.
T Consensus 86 ~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 86 DFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999977654
No 3
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.96 E-value=1.4e-29 Score=175.59 Aligned_cols=115 Identities=24% Similarity=0.462 Sum_probs=107.6
Q ss_pred eeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccC--CCCCceEEeCCCCHHHHHHHHH
Q psy14281 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIILKDVPFKHLTDILE 130 (171)
Q Consensus 53 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~--~~~~~~i~l~~v~~~~~~~lL~ 130 (171)
++++.|.+.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ++....|.++++++++|+.+|+
T Consensus 3 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~ 82 (120)
T 2if5_A 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMD 82 (120)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999987 5667899999999999999999
Q ss_pred HHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 131 FMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 131 ~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
|+|||++.++.+++.+++.+|++|+++.|++.|++++
T Consensus 83 ~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 83 FAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999854
No 4
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.96 E-value=7.7e-30 Score=176.97 Aligned_cols=116 Identities=22% Similarity=0.368 Sum_probs=107.7
Q ss_pred eeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHHHH
Q psy14281 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFM 132 (171)
Q Consensus 53 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~~i 132 (171)
++++.|...+++.|+++++++.+|||+|.++|++|+|||.||+++|+||++||.++. ...|.++++++++|+.+|+|+
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT--CCCEEECGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999998864 467999999999999999999
Q ss_pred hcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhccC
Q psy14281 133 YAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKRE 170 (171)
Q Consensus 133 Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r~ 170 (171)
|||++.++.+++.+++.+|++|+++.|++.|+.++.++
T Consensus 80 Ytg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 80 YTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999976653
No 5
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=176.10 Aligned_cols=119 Identities=24% Similarity=0.414 Sum_probs=109.9
Q ss_pred ceeEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeC-CCCHHHHHH
Q psy14281 49 QQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILK-DVPFKHLTD 127 (171)
Q Consensus 49 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~-~v~~~~~~~ 127 (171)
+.+.++++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++......|.++ ++++++|+.
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~ 82 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEP 82 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHH
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHH
Confidence 4566889999999999999999999999999999999999999999999999999999884445688995 899999999
Q ss_pred HHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 128 ILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 128 lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+++
T Consensus 83 lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 83 LIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp HHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999854
No 6
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=176.67 Aligned_cols=122 Identities=23% Similarity=0.425 Sum_probs=107.4
Q ss_pred CCceeEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeC-CCCHHHH
Q psy14281 47 EQQQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILK-DVPFKHL 125 (171)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~-~v~~~~~ 125 (171)
..+...++++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~--~~~~i~l~~~~~~~~f 82 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS--RSAVVELPAAVQPQSF 82 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC--CCSEEECCTTCCHHHH
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC--CCCEEEECCCCCHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999986 55789997 8999999
Q ss_pred HHHHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhccC
Q psy14281 126 TDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKRE 170 (171)
Q Consensus 126 ~~lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r~ 170 (171)
+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+++.+.
T Consensus 83 ~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 83 QQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999977653
No 7
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.96 E-value=5e-29 Score=177.05 Aligned_cols=121 Identities=23% Similarity=0.416 Sum_probs=112.3
Q ss_pred ceeEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeC-CCCHHHHHH
Q psy14281 49 QQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILK-DVPFKHLTD 127 (171)
Q Consensus 49 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~-~v~~~~~~~ 127 (171)
..+.+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++......|.++ ++++++|+.
T Consensus 10 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~ 89 (138)
T 2z8h_A 10 AVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEP 89 (138)
T ss_dssp CCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHH
T ss_pred CeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHH
Confidence 4456888999999999999999999999999999999999999999999999999999885445689995 899999999
Q ss_pred HHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 128 ILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 128 lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+++.+
T Consensus 90 lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 131 (138)
T 2z8h_A 90 LIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKF 131 (138)
T ss_dssp HHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTC
T ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997654
No 8
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=178.64 Aligned_cols=119 Identities=21% Similarity=0.408 Sum_probs=108.8
Q ss_pred ceeEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccC----CCCCceEEeCCCCHHH
Q psy14281 49 QQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN----PSKHPIIILKDVPFKH 124 (171)
Q Consensus 49 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~----~~~~~~i~l~~v~~~~ 124 (171)
+...+.++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ++....|.++++++++
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~ 100 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMV 100 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHH
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHH
Confidence 445588899999999999999999999999999999999999999999999999999886 2467789999999999
Q ss_pred HHHHHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 125 LTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 125 ~~~lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++++
T Consensus 101 f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999854
No 9
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.96 E-value=7.4e-29 Score=172.41 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=108.8
Q ss_pred eEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHH
Q psy14281 51 YYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILE 130 (171)
Q Consensus 51 ~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~ 130 (171)
..++++.|+..+.+.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ..+|.++++++++|+.+|+
T Consensus 4 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~---~~~i~l~~~~~~~f~~ll~ 80 (121)
T 1buo_A 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPKTFQQILE 80 (121)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHHHHH
T ss_pred eeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC---CcEEEeCCCCHHHHHHHHH
Confidence 3477789999999999999999999999999999999999999999999999999874 4679999999999999999
Q ss_pred HHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 131 FMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 131 ~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
|+|||++.++.+++.+++.+|++|+++.|++.|+.++.+
T Consensus 81 ~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 81 YAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986643
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=170.04 Aligned_cols=111 Identities=21% Similarity=0.367 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeC--CCCHHHHHHHHHHHh
Q psy14281 56 NDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILK--DVPFKHLTDILEFMY 133 (171)
Q Consensus 56 ~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~--~v~~~~~~~lL~~iY 133 (171)
+.|...+.+.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Y 80 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIY 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999886 34567777 999999999999999
Q ss_pred cCccccCCCCHHHHHHHhhhcCccchHhhhhhhhc
Q psy14281 134 AGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168 (171)
Q Consensus 134 tg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~ 168 (171)
||++.++.+++.+++.+|++|+++.|++.|++++.
T Consensus 81 t~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 81 TGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999998654
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.95 E-value=1.5e-28 Score=174.08 Aligned_cols=113 Identities=21% Similarity=0.346 Sum_probs=102.7
Q ss_pred ecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHHHHhc
Q psy14281 55 WNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFMYA 134 (171)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~~iYt 134 (171)
++.|...+++.|+++++++.+|||+|.++|++|+|||.||+++|+||++||.++. ...|.++++++++|+.+|+|+||
T Consensus 5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYt 82 (135)
T 2yy9_A 5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYT 82 (135)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC------CCEEECGGGHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999999999999999999998864 46799999999999999999999
Q ss_pred CccccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 135 GEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 135 g~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
|++.++.+++.+++.+|++|+|+.|++.|+.++.+
T Consensus 83 g~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~ 117 (135)
T 2yy9_A 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQ 117 (135)
T ss_dssp SCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC-
T ss_pred CCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986644
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.95 E-value=1.1e-28 Score=171.13 Aligned_cols=112 Identities=26% Similarity=0.441 Sum_probs=105.2
Q ss_pred eeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHHHH
Q psy14281 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFM 132 (171)
Q Consensus 53 ~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~~i 132 (171)
++++.|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ..+|.++++++++|+.+|+|+
T Consensus 5 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ---KDVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC---CSGGGGGGCCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHHHHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999874 346788899999999999999
Q ss_pred hcCccccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 133 YAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 133 Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
|||++.++.+++.+++.+|++|+++.|++.|++++
T Consensus 82 Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l 116 (119)
T 2q81_A 82 YTAKLSLSPENVDDVLAVATFLQMQDIITACHALK 116 (119)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999854
No 13
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.94 E-value=2.3e-27 Score=163.87 Aligned_cols=111 Identities=25% Similarity=0.420 Sum_probs=103.4
Q ss_pred ceeEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHH
Q psy14281 49 QQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDI 128 (171)
Q Consensus 49 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~l 128 (171)
+...+.+++|...+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||+++|.++ ...|.++++++++|+.+
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~---~~~i~l~~~~~~~f~~~ 81 (116)
T 3fkc_A 5 KLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA---GQVVELSFIRAEIFAEI 81 (116)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHHH
T ss_pred ceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHHHHHH
Confidence 344577889999999999999999999999999999999999999999999999999875 46899999999999999
Q ss_pred HHHHhcCcc-ccCCCCHHHHHHHhhhcCccchHhh
Q psy14281 129 LEFMYAGEV-NVSQDQLPSFLKTADRLKIKGLAEA 162 (171)
Q Consensus 129 L~~iYtg~~-~~~~~~~~~ll~~A~~~~i~~L~~~ 162 (171)
|+|+|||++ .++.+++.+++.+|++|+++.|+++
T Consensus 82 l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~l 116 (116)
T 3fkc_A 82 LNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116 (116)
T ss_dssp HHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHTC
T ss_pred HHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCcC
Confidence 999999999 7999999999999999999999864
No 14
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=157.26 Aligned_cols=100 Identities=25% Similarity=0.349 Sum_probs=91.2
Q ss_pred HhhCCCceeEEEEeCC----EEEEeehhhhcccChhHHhccccC--CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCC
Q psy14281 69 LRNDNSFTDVTLACEG----QTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQD 142 (171)
Q Consensus 69 ~~~~~~~~Dv~i~~~~----~~~~~Hk~iLaa~S~~F~~~f~~~--~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~ 142 (171)
+++++.+|||+|.+++ +.|+|||.||+++|+||++||.++ ++. ..|.++++++++|+.+|+|+|||++.++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 6788999999999988 899999999999999999999988 445 889999999999999999999999999999
Q ss_pred CHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 143 QLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 143 ~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
++.+++.+|++|+++.|++.|..++.+
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999999999999986643
No 15
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.93 E-value=2.8e-26 Score=178.01 Aligned_cols=118 Identities=20% Similarity=0.402 Sum_probs=101.9
Q ss_pred eEeeecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccC----CCCCceEEeCCCCHHHHH
Q psy14281 51 YYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN----PSKHPIIILKDVPFKHLT 126 (171)
Q Consensus 51 ~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~----~~~~~~i~l~~v~~~~~~ 126 (171)
..+.++.|+..+++.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ++....|.++++++.+|+
T Consensus 7 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~ 86 (256)
T 3hve_A 7 SAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 86 (256)
T ss_dssp ---CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHH
T ss_pred CccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHH
Confidence 4477789999999999999999999999999999999999999999999999999886 346678999999999999
Q ss_pred HHHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhc
Q psy14281 127 DILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168 (171)
Q Consensus 127 ~lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~ 168 (171)
.+|+|+|||++.++.+++.+++.+|++|+++.|++.|..++.
T Consensus 87 ~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~ 128 (256)
T 3hve_A 87 EILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 128 (256)
T ss_dssp HHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998664
No 16
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.93 E-value=8.5e-26 Score=156.72 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=95.5
Q ss_pred eecccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHHHHh
Q psy14281 54 KWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFMY 133 (171)
Q Consensus 54 ~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~~iY 133 (171)
..+.+...+++.|+ +.++.+|||+|.++|+.|+|||.||+++|+||++ ....|.++++++++|+.+|+|+|
T Consensus 11 ~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-------~~~~i~l~~v~~~~f~~ll~fiY 81 (119)
T 3m5b_A 11 PSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR-------RGQWALGEGISPSTFAQLLNFVY 81 (119)
T ss_dssp CCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC-------CEEEECCSSCCHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc-------CCCEEEeCCCCHHHHHHHHHHHc
Confidence 33556778888886 6789999999999999999999999999999985 23678999999999999999999
Q ss_pred cCccccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 134 AGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 134 tg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
||++.++.+++.+++.+|++|+++.|++.|++.+
T Consensus 82 tg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~ 115 (119)
T 3m5b_A 82 GESVELQPGELRPLQEAARALGVQSLEEACWRAR 115 (119)
T ss_dssp TCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999854
No 17
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=163.70 Aligned_cols=111 Identities=24% Similarity=0.418 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccC--CCCCceEEeCCCCHHHHHHHHHHHhcCc
Q psy14281 59 QSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIILKDVPFKHLTDILEFMYAGE 136 (171)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~--~~~~~~i~l~~v~~~~~~~lL~~iYtg~ 136 (171)
++.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ ++....|.++++++++|+.+|+|+|+|.
T Consensus 9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~ 88 (145)
T 4eoz_A 9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 88 (145)
T ss_dssp CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCc
Confidence 45788999999999999999999999999999999999999999999987 4556789999999999999999999999
Q ss_pred cccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 137 VNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 137 ~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
+.++.+++.+++.+|++|+++.|++.|+.++.+
T Consensus 89 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 121 (145)
T 4eoz_A 89 APNLDKMADDLLAAADKYALERLKVMCEDALCS 121 (145)
T ss_dssp CTTGGGTHHHHHHHHHHTTCHHHHHHHHCC---
T ss_pred cCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986653
No 18
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=9e-26 Score=177.24 Aligned_cols=119 Identities=25% Similarity=0.386 Sum_probs=106.7
Q ss_pred eeEeeecccHHHHHHHHHHHhhCCCceeEEEEeC---CEEEEeehhhhcccChhHHhccccC--CCCCceEEeC------
Q psy14281 50 QYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACE---GQTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIILK------ 118 (171)
Q Consensus 50 ~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~~~---~~~~~~Hk~iLaa~S~~F~~~f~~~--~~~~~~i~l~------ 118 (171)
...+.++.|+..+++.|+++++++.+|||+|.++ |+.|+|||.||+++|+||++||.++ ++....|.++
T Consensus 7 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~ 86 (279)
T 3i3n_A 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEP 86 (279)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTT
T ss_pred ccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccC
Confidence 4458889999999999999999999999999998 8999999999999999999999988 6667899998
Q ss_pred CCCHHHHHHHHHHHhcCccccCCCCHHHHHHHhhhcCccchHhhhhhhhc
Q psy14281 119 DVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168 (171)
Q Consensus 119 ~v~~~~~~~lL~~iYtg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~ 168 (171)
++++.+|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|..++.
T Consensus 87 ~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~ 136 (279)
T 3i3n_A 87 GPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLK 136 (279)
T ss_dssp CSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998654
No 19
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.92 E-value=7.7e-26 Score=165.41 Aligned_cols=113 Identities=24% Similarity=0.391 Sum_probs=105.4
Q ss_pred ccHHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccC--CCCCceEEeCCCCHHHHHHHHHHHhc
Q psy14281 57 DFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIILKDVPFKHLTDILEFMYA 134 (171)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~--~~~~~~i~l~~v~~~~~~~lL~~iYt 134 (171)
.+.+.+.+.|+++++++.+|||+|.++|+.|+|||.||+++|+||++||.++ +.....|.++++++++|+.+|+|+|+
T Consensus 16 ~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt 95 (172)
T 3htm_A 16 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 95 (172)
T ss_dssp CCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhC
Confidence 3456788999999999999999999999999999999999999999999987 66668999999999999999999999
Q ss_pred CccccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 135 GEVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 135 g~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
|++.++.+++.+++.+|++|+++.|++.|+..+.+
T Consensus 96 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 130 (172)
T 3htm_A 96 GKAPNLDKMADDLLAAADKYALERLKVMCEDALCS 130 (172)
T ss_dssp SCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986653
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.89 E-value=2.3e-23 Score=165.79 Aligned_cols=111 Identities=24% Similarity=0.418 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhhCCCceeEEEEeCCEEEEeehhhhcccChhHHhccccC--CCCCceEEeCCCCHHHHHHHHHHHhcCc
Q psy14281 59 QSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIILKDVPFKHLTDILEFMYAGE 136 (171)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~--~~~~~~i~l~~v~~~~~~~lL~~iYtg~ 136 (171)
...+.+.|.++++++.++||+|.++|++|+|||.|||++|+||++||.++ ++...+|.++++++++|+.+|+|+|+|.
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~ 237 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 237 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC
Confidence 35788999999999999999999999999999999999999999999987 6677899999999999999999999999
Q ss_pred cccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 137 VNVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 137 ~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
+.+..+++.+++.+|++|+++.|++.|+..+.+
T Consensus 238 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 270 (312)
T 3hqi_A 238 APNLDKMADDLLAAADKYALERLKVMCEDALCS 270 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHc
Confidence 998888999999999999999999999997654
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.47 E-value=6.4e-14 Score=101.33 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=75.7
Q ss_pred EEEEe-CCEEEEeehhhhcccChhHHhcccc-C---CCCCceEEeCCCCHHHHHHHHHHHhcCc----------------
Q psy14281 78 VTLAC-EGQTCKAHKMVLSACSPYFKTLLEE-N---PSKHPIIILKDVPFKHLTDILEFMYAGE---------------- 136 (171)
Q Consensus 78 v~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~-~---~~~~~~i~l~~v~~~~~~~lL~~iYtg~---------------- 136 (171)
|++.. +|..|.+|+.+ |+.|+||++||.+ + +.....|.|++|++.+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 66764 78999999999 8999999999987 3 3444689999999999999999999877
Q ss_pred ----------cccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 137 ----------VNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 137 ----------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
+.+..+++.+|+.+|++|+|..|.++|-..+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~v 122 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6677788999999999999999999998754
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.39 E-value=1.3e-12 Score=86.84 Aligned_cols=78 Identities=15% Similarity=0.262 Sum_probs=65.4
Q ss_pred EEEEe-CCEEEEeehhhhcccChhHHhccccC----CCCCceEEeCCCCHHHHHHHHHHHh-----c---Cccc---cCC
Q psy14281 78 VTLAC-EGQTCKAHKMVLSACSPYFKTLLEEN----PSKHPIIILKDVPFKHLTDILEFMY-----A---GEVN---VSQ 141 (171)
Q Consensus 78 v~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~~----~~~~~~i~l~~v~~~~~~~lL~~iY-----t---g~~~---~~~ 141 (171)
|+++. +|.+|.+||.+ |+.|++|++||.+. ++....|.|+++++.+++.+++|+| + +.+. ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 45554 78999999999 99999999999873 4456789999999999999999999 4 5666 888
Q ss_pred CCHHHHHHHhhhcCc
Q psy14281 142 DQLPSFLKTADRLKI 156 (171)
Q Consensus 142 ~~~~~ll~~A~~~~i 156 (171)
+++.+|+.||++|+.
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999873
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.22 E-value=1.4e-11 Score=87.30 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=74.8
Q ss_pred EEEEe-CCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHHHHhcCc--------------------
Q psy14281 78 VTLAC-EGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFMYAGE-------------------- 136 (171)
Q Consensus 78 v~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~~iYtg~-------------------- 136 (171)
|++.. +|..|.+|+.+ |..|.+++.|+.... ...|.+++|+..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~ 80 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIP 80 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhh
Confidence 66665 78999999998 889999999998642 4579999999999999999999754
Q ss_pred ------cccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 137 ------VNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 137 ------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
+.+..+.+.+|+.||++++|..|.++|-..+
T Consensus 81 ~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~v 117 (141)
T 1fs1_B 81 VWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 117 (141)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566678899999999999999999987643
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.07 E-value=2.2e-11 Score=88.08 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=47.0
Q ss_pred EEEEe-CCEEEEeehhhhcccChhHHhccccCCCCCceEEeCCCCHHHHHHHHHHHhcCc--------------------
Q psy14281 78 VTLAC-EGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDILEFMYAGE-------------------- 136 (171)
Q Consensus 78 v~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~~~~~~~~i~l~~v~~~~~~~lL~~iYtg~-------------------- 136 (171)
|++.. +|..|.+|+.+ |..|++|+.||.... ....|.|++|+..+++.|++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i 83 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC-VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDL 83 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC-------------CCTTSCHHHHHHHHHC-------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC-CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchh
Confidence 56664 78999999998 889999999998752 23579999999999999999999865
Q ss_pred -------cccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 137 -------VNVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 137 -------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
+.+..+.+.+|+.||++|+|..|.++|-..+
T Consensus 84 ~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~v 121 (160)
T 2p1m_A 84 KAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121 (160)
T ss_dssp -----------------CHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456678899999999999999999987643
No 25
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.77 E-value=5.5e-08 Score=65.48 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=73.9
Q ss_pred eEEEEeCCEEEEeehhhhcccC-hhHHhccccC------CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCCC-HHHHH
Q psy14281 77 DVTLACEGQTCKAHKMVLSACS-PYFKTLLEEN------PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQ-LPSFL 148 (171)
Q Consensus 77 Dv~i~~~~~~~~~Hk~iLaa~S-~~F~~~f~~~------~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~~-~~~ll 148 (171)
-|+|.|||+.|...+..|+... .+|..||.+. .....++-+ |-++..|+.+|+|+.+|++.++.+. ...++
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 3778899999999999999875 5778888754 112345655 6899999999999999999876543 57899
Q ss_pred HHhhhcCccchHhhhhhhh
Q psy14281 149 KTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 149 ~~A~~~~i~~L~~~c~~~~ 167 (171)
.-|++|+|+.|++.|+..+
T Consensus 86 ~Ea~fy~l~~L~~~l~~~i 104 (107)
T 3drz_A 86 EEAEFYNITSLIKLVKDKI 104 (107)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999843
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.77 E-value=1.9e-08 Score=66.52 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=63.4
Q ss_pred EEEEe-CCEEEEeehhhhcccChhHHhccccC----CCCCceEEeCCCCHHHHHHHHHHHhcCc-----------cccCC
Q psy14281 78 VTLAC-EGQTCKAHKMVLSACSPYFKTLLEEN----PSKHPIIILKDVPFKHLTDILEFMYAGE-----------VNVSQ 141 (171)
Q Consensus 78 v~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~~----~~~~~~i~l~~v~~~~~~~lL~~iYtg~-----------~~~~~ 141 (171)
|++.. +|..|.+++.+ |..|.+++.|+... +.....|.|++|+..+++.+++|+|... ..+..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 55655 88999999997 88999999999863 3334689999999999999999998532 35677
Q ss_pred CCHHHHHHHhhhcCc
Q psy14281 142 DQLPSFLKTADRLKI 156 (171)
Q Consensus 142 ~~~~~ll~~A~~~~i 156 (171)
+.+.+|+.||++++|
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 889999999999875
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.76 E-value=1.7e-08 Score=67.13 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=64.6
Q ss_pred EEEEe-CCEEEEeehhhhcccChhHHhccccC-CCCCceEEeCCCCHHHHHHHHHHHhcCc--------------cccCC
Q psy14281 78 VTLAC-EGQTCKAHKMVLSACSPYFKTLLEEN-PSKHPIIILKDVPFKHLTDILEFMYAGE--------------VNVSQ 141 (171)
Q Consensus 78 v~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~~-~~~~~~i~l~~v~~~~~~~lL~~iYtg~--------------~~~~~ 141 (171)
|++.. +|..|.+++.+ |..|..++.|+..+ +.....|.|++|+..+++.+++|+|... +.+..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~ 84 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPT 84 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCH
Confidence 66665 88999999997 88999999999875 3444689999999999999999998532 23455
Q ss_pred CCHHHHHHHhhhcCc
Q psy14281 142 DQLPSFLKTADRLKI 156 (171)
Q Consensus 142 ~~~~~ll~~A~~~~i 156 (171)
+.+.+|+.||++++|
T Consensus 85 ~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 85 EMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 678999999999875
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.61 E-value=8e-08 Score=69.83 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=69.2
Q ss_pred eEEEEe-CCEEEEeehhhhcccChhHHhccccCC------CCCceEEeCCCCHHHHHHHHHHHhcCc-------------
Q psy14281 77 DVTLAC-EGQTCKAHKMVLSACSPYFKTLLEENP------SKHPIIILKDVPFKHLTDILEFMYAGE------------- 136 (171)
Q Consensus 77 Dv~i~~-~~~~~~~Hk~iLaa~S~~F~~~f~~~~------~~~~~i~l~~v~~~~~~~lL~~iYtg~------------- 136 (171)
-|++.. +|..|.+++.+ |..|..++.|+.... .....|.|++|+..+++.|+.|++...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 466654 78899999998 778999999997642 223689999999999999999997532
Q ss_pred ------------cccCCCCHHHHHHHhhhcCccchHhhhhh
Q psy14281 137 ------------VNVSQDQLPSFLKTADRLKIKGLAEAPQS 165 (171)
Q Consensus 137 ------------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 165 (171)
+.+..+.+.+|+.||++|+|..|.++|-.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~ 127 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCK 127 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 12334567899999999999999998765
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.33 E-value=8.9e-07 Score=59.98 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=62.0
Q ss_pred eEEEE-eCCEEEEeehhhhcccChhHHhccccC----CCCCceEEeCCCCHHHHHHHHHHHhcCc-----------cccC
Q psy14281 77 DVTLA-CEGQTCKAHKMVLSACSPYFKTLLEEN----PSKHPIIILKDVPFKHLTDILEFMYAGE-----------VNVS 140 (171)
Q Consensus 77 Dv~i~-~~~~~~~~Hk~iLaa~S~~F~~~f~~~----~~~~~~i~l~~v~~~~~~~lL~~iYtg~-----------~~~~ 140 (171)
-|++. .+|..|.+.+.+ |..|..++.|+... +.....|.|++|+..+++.+++|++... +.+.
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 36666 488999999994 78899999999864 2334689999999999999999997532 2455
Q ss_pred CCCHHHHHHHhhhcCc
Q psy14281 141 QDQLPSFLKTADRLKI 156 (171)
Q Consensus 141 ~~~~~~ll~~A~~~~i 156 (171)
.+.+.+|+.||++++|
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 5678999999999875
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=98.09 E-value=1.1e-05 Score=59.80 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=71.8
Q ss_pred EEEEeCCEEEEeehhhhcccC-hhHHhccccC------CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCCC-HHHHHH
Q psy14281 78 VTLACEGQTCKAHKMVLSACS-PYFKTLLEEN------PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQ-LPSFLK 149 (171)
Q Consensus 78 v~i~~~~~~~~~Hk~iLaa~S-~~F~~~f~~~------~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~~-~~~ll~ 149 (171)
|+|.|||..|...+..|.... .+|..||.+. .....++-+ |-++..|+.||+|+-+|.+.++.+. ...++.
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~e 92 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLE 92 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHHH
Confidence 677899999999999999874 4778887654 112345555 5789999999999999999886553 577999
Q ss_pred HhhhcCccchHhhhhhhh
Q psy14281 150 TADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 150 ~A~~~~i~~L~~~c~~~~ 167 (171)
-|++|+|+.|++.|+..+
T Consensus 93 EA~FygL~~Lv~~l~~~i 110 (202)
T 3drx_A 93 EAEFYNITSLIKLVKDKI 110 (202)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHH
Confidence 999999999999998743
No 31
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=97.61 E-value=0.00044 Score=47.42 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=63.6
Q ss_pred eEEEEeCCEEEEeehhhhcccChhHHhccccC------CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCC-CHHHHHH
Q psy14281 77 DVTLACEGQTCKAHKMVLSACSPYFKTLLEEN------PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQD-QLPSFLK 149 (171)
Q Consensus 77 Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~------~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~-~~~~ll~ 149 (171)
=|+|.|||..|..-+..|+....- +|... .....++-+ |-++..|+.||+|+-+|++.++.+ .+..++.
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S---~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTS---STTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCc---eecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 378889999999999999865332 22221 123345555 569999999999999999987654 4788999
Q ss_pred HhhhcCccchH--hhhhh
Q psy14281 150 TADRLKIKGLA--EAPQS 165 (171)
Q Consensus 150 ~A~~~~i~~L~--~~c~~ 165 (171)
-|++|+|+.+. ..|..
T Consensus 90 Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 90 ELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp HHHHTTCCGGGBCHHHHH
T ss_pred HHHHcCCChHHHHHHHHH
Confidence 99999999884 44544
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=97.58 E-value=0.00028 Score=47.76 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=65.2
Q ss_pred EEEEeCCEEEEeehhhhcccC-hhHHhccccC---CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCC-CHHHHHHHhh
Q psy14281 78 VTLACEGQTCKAHKMVLSACS-PYFKTLLEEN---PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQD-QLPSFLKTAD 152 (171)
Q Consensus 78 v~i~~~~~~~~~Hk~iLaa~S-~~F~~~f~~~---~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~-~~~~ll~~A~ 152 (171)
|+|.|||..|...+..|+... ..+..|+... .....++-+ +-++..|+.+|+|+-+|++.++.+ ....++.-|+
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~ 85 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE 85 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHH
Confidence 788899999999999998774 3456666543 223456666 578999999999999999987764 4688999999
Q ss_pred hcCccchH
Q psy14281 153 RLKIKGLA 160 (171)
Q Consensus 153 ~~~i~~L~ 160 (171)
+|+|+...
T Consensus 86 fy~i~~~~ 93 (115)
T 3kvt_A 86 FWGLDSNQ 93 (115)
T ss_dssp HHTCCGGG
T ss_pred HhCCChHH
Confidence 99999875
No 33
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=97.46 E-value=0.00056 Score=47.89 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=61.1
Q ss_pred eEEEEeCCEEEEeehhhhcccChhHHhccccC------CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCC-CHHHHHH
Q psy14281 77 DVTLACEGQTCKAHKMVLSACSPYFKTLLEEN------PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQD-QLPSFLK 149 (171)
Q Consensus 77 Dv~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~------~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~-~~~~ll~ 149 (171)
=|+|.|||..|...+..|.....- +|... .....++-+ |-++..|+.||+|+-+|++.++.+ .+..+++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~S---~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTTS---TTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCCe---eecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 478889999999999999865332 22221 123355665 569999999999999999987654 4788999
Q ss_pred HhhhcCccch
Q psy14281 150 TADRLKIKGL 159 (171)
Q Consensus 150 ~A~~~~i~~L 159 (171)
-|++|+|+.+
T Consensus 112 Ea~fy~i~~l 121 (140)
T 2nz0_B 112 ELAFYGILPE 121 (140)
T ss_dssp HHHHHTCCGG
T ss_pred HHHHcCCChH
Confidence 9999999998
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=97.39 E-value=0.00044 Score=45.65 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=63.3
Q ss_pred EEEEeCCEEEEeehhhhcccC-hhHHhccccC---CCCCceEEeCCCCHHHHHHHHHHHhc-CccccCCC-CHHHHHHHh
Q psy14281 78 VTLACEGQTCKAHKMVLSACS-PYFKTLLEEN---PSKHPIIILKDVPFKHLTDILEFMYA-GEVNVSQD-QLPSFLKTA 151 (171)
Q Consensus 78 v~i~~~~~~~~~Hk~iLaa~S-~~F~~~f~~~---~~~~~~i~l~~v~~~~~~~lL~~iYt-g~~~~~~~-~~~~ll~~A 151 (171)
|+|.|||..|...+..|+..- ..+..++... .....++-+ |-++..|+.+|+|+-+ |++.++.+ .+..+++-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 678899999999999997653 2334444322 123456666 5689999999999998 89877654 478899999
Q ss_pred hhcCccchH-hhhh
Q psy14281 152 DRLKIKGLA-EAPQ 164 (171)
Q Consensus 152 ~~~~i~~L~-~~c~ 164 (171)
++|+|+.+. +.|.
T Consensus 82 ~fy~i~~~~~~~~~ 95 (100)
T 1t1d_A 82 KFYELGENAFERYR 95 (100)
T ss_dssp HHTTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 999998854 3443
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=97.28 E-value=0.00043 Score=46.05 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=62.6
Q ss_pred EEEEeCCEEEEeehhhhcccChhHHhccccC------CCCCceEEeCCCCHHHHHHHHHHHhcCccccCCC-CHHHHHHH
Q psy14281 78 VTLACEGQTCKAHKMVLSACSPYFKTLLEEN------PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQD-QLPSFLKT 150 (171)
Q Consensus 78 v~i~~~~~~~~~Hk~iLaa~S~~F~~~f~~~------~~~~~~i~l~~v~~~~~~~lL~~iYtg~~~~~~~-~~~~ll~~ 150 (171)
|++.|||+.|...+..|+....- +|... .....++-+ +-++..|+.+|+|+-+|++.++.+ .+..++.-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s---~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDT---LLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSS---STTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCc---cccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 68899999999999999865432 22221 123345655 568999999999999999887654 47889999
Q ss_pred hhhcCccchH--hhhhh
Q psy14281 151 ADRLKIKGLA--EAPQS 165 (171)
Q Consensus 151 A~~~~i~~L~--~~c~~ 165 (171)
|++|+|+.+. ..|..
T Consensus 78 a~fy~i~~l~~~~cc~~ 94 (105)
T 1nn7_A 78 LAFFGLIPEIIGDCCYE 94 (105)
T ss_dssp HHHHTCCSCCBCHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 9999999873 34544
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=94.28 E-value=0.12 Score=43.34 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=60.4
Q ss_pred eEEEEeCCEEEEeehhhhcccChhH-HhccccC---CCCCceEEeCCCCHHHHHHHHHHHhc-CccccCCC-CHHHHHHH
Q psy14281 77 DVTLACEGQTCKAHKMVLSACSPYF-KTLLEEN---PSKHPIIILKDVPFKHLTDILEFMYA-GEVNVSQD-QLPSFLKT 150 (171)
Q Consensus 77 Dv~i~~~~~~~~~Hk~iLaa~S~~F-~~~f~~~---~~~~~~i~l~~v~~~~~~~lL~~iYt-g~~~~~~~-~~~~ll~~ 150 (171)
-|++.|||..|...+..|+..-.-+ -.++... .....+.-+ |-++..|+.+|+|+.+ |++..+.+ ....+.+-
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E 131 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEE 131 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHH
Confidence 4777899999999999997653222 2222111 223355666 6799999999999999 99877655 35678999
Q ss_pred hhhcCccchH
Q psy14281 151 ADRLKIKGLA 160 (171)
Q Consensus 151 A~~~~i~~L~ 160 (171)
|++|++..+.
T Consensus 132 ~~f~~i~~~~ 141 (514)
T 2r9r_B 132 IRFYELGEEA 141 (514)
T ss_dssp HHHTTCCHHH
T ss_pred HHhcCCCHHH
Confidence 9999998765
No 37
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.21 E-value=1.1 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=28.6
Q ss_pred ccccCCCCHHHHHHHhhhcCccchHhhhhhhhc
Q psy14281 136 EVNVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168 (171)
Q Consensus 136 ~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~ 168 (171)
.-.++.+|+..++.+|+.|+++.|.+.|..++.
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~ 37 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAK 37 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345788999999999999999999999987654
No 38
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=59.83 E-value=5.3 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.8
Q ss_pred ccCCCCHHHHHHHhhhcCccchHhhhhhhhcc
Q psy14281 138 NVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169 (171)
Q Consensus 138 ~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~r 169 (171)
.++.+++..++..|+.|+++.|++.|..++.+
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~ 162 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINY 162 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45778999999999999999999999886643
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=43.70 E-value=13 Score=28.39 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=27.1
Q ss_pred ccCCCCHHHHHHHhhhcCccchHhhhhhhhc
Q psy14281 138 NVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168 (171)
Q Consensus 138 ~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~ 168 (171)
.++.+++..++.+|+.|+++.|++.|-.++.
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 301 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVDFIN 301 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3567899999999999999999999988654
No 40
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=32.50 E-value=25 Score=26.30 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=27.1
Q ss_pred ccCCCCHHHHHHHhhhcCccchHhhhhhhhc
Q psy14281 138 NVSQDQLPSFLKTADRLKIKGLAEAPQSSVK 168 (171)
Q Consensus 138 ~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~~ 168 (171)
.++.+++..++..|+.|+++.|.+.|..++.
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~ 168 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIR 168 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 4677899999999999999999999987553
No 41
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=32.03 E-value=21 Score=26.36 Aligned_cols=30 Identities=3% Similarity=-0.056 Sum_probs=26.4
Q ss_pred ccCCCCHHHHHHHhhhcCccchHhhhhhhh
Q psy14281 138 NVSQDQLPSFLKTADRLKIKGLAEAPQSSV 167 (171)
Q Consensus 138 ~~~~~~~~~ll~~A~~~~i~~L~~~c~~~~ 167 (171)
.+..+++..++..|+.|+++.|.+.|..++
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i 159 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYL 159 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 356789999999999999999999998754
No 42
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=22.58 E-value=45 Score=24.20 Aligned_cols=14 Identities=57% Similarity=0.897 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCc
Q psy14281 123 KHLTDILEFMYAGE 136 (171)
Q Consensus 123 ~~~~~lL~~iYtg~ 136 (171)
...+.+|+|||+|+
T Consensus 186 ~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 186 QMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCC
Confidence 34678999999985
Done!