RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14281
(171 letters)
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 94.7 bits (236), Expect = 1e-25
Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 39 ISKTKMNGEQQQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACS 98
+ N Q + + ++ + R ++ F D L +G+ K +L+A S
Sbjct: 11 VDLGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAAS 70
Query: 99 PYFKTL----LEENPSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRL 154
PY +T ++ I L+ + + +IL+++++G++ +++D + ++ AD L
Sbjct: 71 PYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLL 130
Query: 155 KIKGLAEA 162
+ L
Sbjct: 131 LLTDLKTL 138
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 93.4 bits (233), Expect = 2e-25
Identities = 22/107 (20%), Positives = 42/107 (39%)
Query: 56 NDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPII 115
+ +++ R D T+ KAH+ VL++ S YF + + +
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFL 62
Query: 116 ILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
V +LEF+Y G +N+ + + AD LK++ +
Sbjct: 63 DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 93.5 bits (233), Expect = 2e-25
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 46 GEQQQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLL 105
G Q ++ +F ++++ R + DV++ +G KAH+ VL+A S YF+ L
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF 63
Query: 106 EENPSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ S + + V + IL F Y G ++++ + TA L+I+ + E
Sbjct: 64 NNSRSAV-VELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 92.7 bits (231), Expect = 4e-25
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 56 NDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPII 115
+ ++ +R + DV + + Q AH+ VL+ S F+ L
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH---RNSQHY 65
Query: 116 ILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
L + K ILE+ Y + + L L A+ L+I+ L E
Sbjct: 66 TLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 92.3 bits (230), Expect = 5e-25
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 51 YYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLL-EENP 109
+ + + +N++ S R + DVT+ EGQ +AH+ VL+ACS YF + + +
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD 64
Query: 110 SKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ I + ++V K +++F Y ++ +S++ + K + L + + E+
Sbjct: 65 GELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 92.3 bits (230), Expect = 5e-25
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 57 DFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIII 116
+++ R D T +G KAHK VL+ACS YFK L + ++
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV---DQKDVVH 65
Query: 117 LKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
L L +LEFMY ++++S + + L A L+++ + A
Sbjct: 66 LDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 91.9 bits (229), Expect = 7e-25
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 53 LKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTL----LEEN 108
+ + D S++++ R DV + EG+ H+ VL+ACS YFK L
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV- 61
Query: 109 PSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ + + V + LT +++F Y + VS + L A L+I ++
Sbjct: 62 -DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 91.9 bits (229), Expect = 1e-24
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 47 EQQQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLL- 105
E + + + +N++ S R + DVT+ EGQ +AH+ VL+ACS YF + +
Sbjct: 8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIV 67
Query: 106 EENPSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ ++ + + ++V K +++F Y ++ +S+D + + + L + + E+
Sbjct: 68 GQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 91.5 bits (228), Expect = 1e-24
Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 49 QQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTL---- 104
Y + +N++ R + DVTL E + +AH+ VL+ACS YF
Sbjct: 6 PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQ 65
Query: 105 LEENPSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ + + ++V + +L+F Y ++ +S++ + ++ A+ L++ L ++
Sbjct: 66 TKNDLVV---SLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 90.7 bits (226), Expect = 3e-24
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 51 YYLKWNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTL----LE 106
+++ S+++ + LR+ + TDV + + +AHK VL ACS F ++ L+
Sbjct: 5 SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK 64
Query: 107 ENPSKHPIIILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ I + ++ + +L+FMY +N+ + + + + TA L+++ + +
Sbjct: 65 R--NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 90.4 bits (225), Expect = 3e-24
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 55 WNDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPI 114
+ ++ R + D TL G KAH VL+ CS +F++L +
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD--GSGGS 61
Query: 115 IILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
++L + +L+F Y G + ++ L A L++ E
Sbjct: 62 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 90.0 bits (224), Expect = 7e-24
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKD 119
++ R + D TL G KAH VL+ CS +F+ + + ++L
Sbjct: 10 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD--GTGGSVVLPA 67
Query: 120 VPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ +L+F Y G + ++ L A L++ E
Sbjct: 68 GFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVEL 110
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 89.2 bits (222), Expect = 3e-23
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 59 QSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLE----ENPSKHPI 114
+ + L ++ FTD L GQ +AHK +L+A SP F + E E SK
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE--SKKNR 75
Query: 115 IILKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGL 159
+ + DV + +++ F+Y G+ L AD+ ++ L
Sbjct: 76 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 88.4 bits (220), Expect = 4e-23
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 60 SNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEEN--PSKHPIIIL 117
+ L ++ FTD L GQ +AHK +L+A SP F + E SK + +
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI 69
Query: 118 KDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGL 159
DV + +++ F+Y G+ L AD+ ++ L
Sbjct: 70 NDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 86.6 bits (215), Expect = 7e-23
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 56 NDFQSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPII 115
+ +++ S R F DVT+ E + +AHK +LSA S YF L ++
Sbjct: 12 IQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFS---VAGQVV 68
Query: 116 ILKDVPFKHLTDILEFMYAGE-VNVSQDQLPSFLKTADRLKIKGLAE 161
L + + +IL ++Y+ + V V D L +K+ L +K +A
Sbjct: 69 ELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 84.2 bits (209), Expect = 8e-22
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 69 LRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTDI 128
R + D + Q AH +VL+ S + + + + +
Sbjct: 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLG-------RRGQWALGEGISPSTFAQL 76
Query: 129 LEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
L F+Y V + +L + A L ++ L EA
Sbjct: 77 LNFVYGESVELQPGELRPLQEAARALGVQSLEEA 110
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 87.3 bits (217), Expect = 1e-21
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 66 FKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTL----LEENPSKHPIIILKDVP 121
R ++ F D L +G+ K +L+A SPY +T ++ I L+ +
Sbjct: 22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS 81
Query: 122 FKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+ +IL+++++G++ +++D + ++ AD L + L
Sbjct: 82 VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 79.1 bits (196), Expect = 5e-20
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 69 LRNDNSFTDVTL----ACEGQTCKAHKMVLSACSPYFKTL----LEENPSKHPIIILKDV 120
+ N+ DV +T AHK VL+ S F + L E S+ I + DV
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSE---IHIPDV 58
Query: 121 PFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGLAEA 162
+L++MY+ E+++ D + + L A + + LA+A
Sbjct: 59 EPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 83.4 bits (206), Expect = 6e-20
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 59 QSNMVTSFKHLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENP--SKHPIII 116
+ + L ++ FTD L GQ +AHK +L+A SP F + E SK +
Sbjct: 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVE 217
Query: 117 LKDVPFKHLTDILEFMYAGEVNVSQDQLPSFLKTADRLKIKGL 159
+ DV + +++ F+Y G+ L AD+ ++ L
Sbjct: 218 INDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 80.4 bits (199), Expect = 5e-19
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 47 EQQQYYLKWNDFQSNMVTSFKHLRNDNSFTDVTLAC---EGQTCKAHKMVLSACSPYFKT 103
+ + + S + R F D+TL G+ +AH+ VL+A + YF
Sbjct: 4 SMEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTP 63
Query: 104 L----LEENPSKHPIIILKDVPFKHLTD------ILEFMYAGEVNVSQDQLPSFLKTADR 153
L E S+ + ++ + + ++E+MY G + VS + L+ ADR
Sbjct: 64 LLSGQFSE--SRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADR 121
Query: 154 LKIKGLAEA 162
+ L E
Sbjct: 122 FLLIRLKEF 130
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Length = 204
Score = 40.0 bits (94), Expect = 1e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 1 VAEKSPEDVRQILSYYKQFSDPLENFRDSQRK 32
+A + +DVR IL+ ++ + E F +K
Sbjct: 173 LATQQTKDVRPILNSFEDKKNLAEEFDHRVKK 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 2e-04
Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 45/203 (22%)
Query: 2 AEKSPEDVRQILSYYKQFSDPLENFRDSQRKLPELPEISKTKMNGEQQ-------QYYLK 54
+ DV +++ ++S + ++S +P + K K+ E Y +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 55 ----WNDF---------------------QSNMVTSFKHLRNDNSFTDVTLACEGQTCKA 89
+D +T F+ + D F + + + A
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 90 HKMVLSACSPYFKTLLE-ENPSKHPIIILKDVPFKH--LTDILEFMYAGEVNVSQDQLPS 146
+L+ TL + + + I + P + IL+F+ E N+ +
Sbjct: 517 SGSILN-------TLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 147 FLKTADRLKIKGLAEAPQSSVKR 169
L+ A + + + E V+R
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQR 589
Score = 29.8 bits (66), Expect = 0.53
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 41/111 (36%)
Query: 100 YFKTLLEENPSKHPIIILKDV-------PF------------KHLTDILEFMYAGEV--- 137
+ LL+ P ++ +++L +V F K +TD L +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 138 -------------------NVSQDQLPSFLKTADRLKIKGLAEAPQSSVKR 169
+ LP + T + ++ +AE+ + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 28.7 bits (65), Expect = 0.61
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S +P + D+ K KG
Sbjct: 60 SSKHVPPYKHNIDKFKAKG 78
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural
genomics, NEW YORK structura genomics research
consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 28.8 bits (65), Expect = 0.65
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S + LP +L+ D + +G
Sbjct: 73 SLNHLPGYLENRDAILARG 91
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 28.4 bits (64), Expect = 0.78
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S +P +++ A++L+ G
Sbjct: 64 SAQHVPGYVEHAEQLRAAG 82
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 28.5 bits (64), Expect = 0.89
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S LP + + A K G
Sbjct: 50 SSSHLPRYNELAPVFKKYG 68
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 28.3 bits (64), Expect = 0.89
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S +P F++ A LK KG
Sbjct: 52 SLKHVPGFIEKAGELKSKG 70
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine
proteinase, chymotrypsin-like proteinase, collapsed O
HOLE, transferase; 2.00A {Equine arteritis virus} SCOP:
b.47.1.3
Length = 198
Score = 28.3 bits (62), Expect = 1.0
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 68 HLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDV 120
H ++ S G+ A + LS+ S +F L P P I+ DV
Sbjct: 128 HTGSNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADV 180
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 28.4 bits (64), Expect = 1.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S+ LP F++ A+ LK KG
Sbjct: 60 SKTHLPGFVEQAEALKAKG 78
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 27.9 bits (63), Expect = 1.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S+ LP +++ A + KG
Sbjct: 48 SKTHLPGYVEQAAAIHGKG 66
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown
function, B-subunit binding, isomerase,
nucleotide-binding, topoisomerase; HET: DNA; 1.95A
{Myxococcus xanthus}
Length = 369
Score = 27.9 bits (63), Expect = 1.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 83 EGQTCK-------AHKMVLSACSPYFKTLLEENPSKHPIIILK 118
G T K + + P F LL E+P ++ +
Sbjct: 316 AGPT-KELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARR 357
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A
{Alvinella pompejana}
Length = 171
Score = 26.8 bits (60), Expect = 2.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 140 SQDQLPSFLKTADRLKIKG 158
S + +P +L D+ K +G
Sbjct: 58 SNNHIPEYLSLYDKFKEEG 76
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer CL
thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A
{Thermus thermophilus} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Length = 219
Score = 26.8 bits (59), Expect = 3.1
Identities = 11/62 (17%), Positives = 19/62 (30%)
Query: 68 HLRNDNSFTDVTLACEGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVPFKHLTD 127
LR + + C K L AC+ + + L P + L + + L
Sbjct: 101 DLRLYGVYLTAAVRCAPPKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLA 160
Query: 128 IL 129
Sbjct: 161 HF 162
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B
1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Length = 260
Score = 27.1 bits (59), Expect = 3.2
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 101 FKTLLEE--NPSKHPIIILKDVPFKHLTDILEFMYAG-----EVNVSQDQLPSFLKTADR 153
FK L+E NP+++P+ + +D FK T I F + V D L K AD
Sbjct: 121 FKPNLQERLNPTRYPVNLFRDDEFK--TTIQHFRHTALQAAINKTVKGDNLVDISKVADA 178
Query: 154 LKIKGLAEA 162
KG +A
Sbjct: 179 AGKKGKVDA 187
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of
allergy and infectious diseases, niaid, hydrolase,
struc genomics; 1.76A {Salmonella typhimurium LT2} PDB:
1mzg_A
Length = 141
Score = 25.3 bits (55), Expect = 8.6
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 5 SPEDVRQILSYYKQFSDPLENFR---DSQRKLPELPEISKTKMN 45
+ D ++L + + ++ E + + ++L EL + N
Sbjct: 6 ALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQN 49
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 25.7 bits (57), Expect = 9.1
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 5 SPEDVRQILSYYKQFSD 21
+ V + + ++F D
Sbjct: 315 NDHMVEDVERFIREFPD 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,460,289
Number of extensions: 129908
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 40
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)